F340478

General Info

Members Datasets Scaffolds Average Seq Length
227 159 454 323

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2870801768|2870803723
Length 358
Sequence SAPSRAPRTVTVTGAAGNIGYALLFRIAAGGMLGPDTPVRLRLLEIPAALRAAEGTAMELADAAFPLLADVEVTDDPAVAFDGVQHAMLVGARPRTKGMERGDLLEANGGIFGPQGRAINDHAADDVRVVVVGNPANTNALIAAAHAPDVPAERFTALTRLDHNRAVAQLAARAGVAVTDVAGVTIWGNHSATQFPDLTHARVRVDGGWRPALEVVDPAWAAEEFVPRVAKRGAEIIEVRGASSAASAASAAVDHMRDWTLGTDAGADGTGTDAAQPGAGTDAGPRWTSAAVVSDGSYEVPEGLISSFPVTSDGGAAWRIVPGLAPDESLLPGTGGRLAATVAELEAERDAVRGLGLL

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
4 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
5 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
8 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
9 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
10 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
11 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
12 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
13 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
14 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
15 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
16 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
17 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
23 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
26 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
29 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
30 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
31 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
32 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
38 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
39 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
41 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
44 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
54 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
55 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
56 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
57 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
58 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
59 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
60 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
61 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
62 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
63 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
64 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
65 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
66 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
67 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
68 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
69 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
70 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
71 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
72 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
73 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
74 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
75 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
76 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
77 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
78 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
79 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
80 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
81 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
82 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
83 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
84 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
85 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
86 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
87 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
88 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
89 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
90 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
91 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
92 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
93 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
94 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
95 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
96 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
97 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
98 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
99 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
100 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
101 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
113 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
115 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
116 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
117 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
118 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
119 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
120 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
121 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
122 2643221553 Microbacterium sp. Root553 Isolate Unclassified
123 2643221566 Microbacterium sp. Root166 Isolate Unclassified
124 2643221597 Microbacterium sp. Root180 Isolate Unclassified
125 2643221616 Leifsonia sp. Root227 Isolate Unclassified
126 2643221630 Microbacterium sp. Root322 Isolate Unclassified
127 2643221687 Mycobacterium sp. Root135 Isolate Unclassified
128 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
129 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
130 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
131 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
132 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
133 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
134 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
135 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
136 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
137 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
138 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
139 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
140 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
141 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
142 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
143 2902837492 Mycolicibacterium sp. P1-18 Isolate Unclassified
144 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
145 2919395869 Microbacterium resistens 2980 Isolate Unclassified
146 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
147 2928153084 Leifsonia sp. 563 Isolate Unclassified
148 2939582691 Mycolicibacterium sp. 624 Isolate Rhizosphere
149 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
150 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
151 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
152 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
153 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
154 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
155 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
156 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
157 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
158 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
159 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.62
Metatranscriptomes 1.76
Isolates 17.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.1
Nodule 0
Rhizoplane 11.45
Rhizosphere 51.98
Stem 0
Stem Tuber 0.44
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10023348 3300001979 Bacteria 2114
2 JGI24735J21928_10000910 3300002067 Bacteria 10554
3 JGI25164J39214_1000818 3300002772 Bacteria 10906
4 JGI25406J46586_10015190 3300003203 Bacteria 3252
5 JGI25165J46597_1000055 3300003214 Bacteria 224187
6 rootH2_10009211 3300003320 Bacteria 15403
7 JGI25407J50210_10007783 3300003373 Bacteria 2691
8 Ga0006562J51391_1058126 3300003578 Bacteria 12450
9 Ga0006562J51391_1058127 3300003578 Bacteria 12505
10 Ga0055539_1000019 3300003752 Bacteria 341727
11 Ga0055533_1000023 3300003756 Bacteria 341727
12 Ga0055525_1000088 3300003759 Bacteria 143732
13 Ga0055527_1000025 3300003760 Bacteria 195817
14 Ga0055542_1000048 3300003762 Bacteria 195800
15 Ga0055529_1000057 3300003763 Bacteria 195807
16 Ga0055540_1002339 3300003792 Bacteria 10142
17 Ga0055540_1002798 3300003792 Bacteria 8923
18 Ga0055540_1004377 3300003792 Bacteria 6401
19 Ga0070660_100034221 3300005339 Bacteria 3837
20 Ga0070668_100154096 3300005347 Bacteria 1861
21 Ga0070663_100077139 3300005455 Bacteria 2438
22 Ga0070684_100246241 3300005535 Bacteria 1633
23 Ga0068855_100108316 3300005563 Bacteria 3191
24 Ga0068857_100042951 3300005577 Bacteria 4010
25 Ga0081538_10003827 3300005981 Bacteria 14052
26 Ga0081539_10004169 3300005985 Bacteria 16405
27 Ga0081539_10070731 3300005985 Bacteria 1872
28 Ga0075430_100000840 3300006846 Bacteria 24062
29 Ga0105243_10704346 3300009148 Bacteria 985
30 Ga0105249_10000013 3300009553 Bacteria 283609
31 Ga0157369_10584368 3300013105 Bacteria 1153
32 Ga0157369_10644729 3300013105 Bacteria 1092
33 Ga0157372_10438826 3300013307 Bacteria 1522
34 Ga0157372_10447942 3300013307 Bacteria 1505
35 Ga0157379_10015671 3300014968 Bacteria 6660
36 Ga0206351_10965500 3300020077 Bacteria 1154
37 Ga0154015_1264013 3300020610 Bacteria 1529
38 Ga0209566_100031 3300025225 Bacteria 341555
39 Ga0209674_100001 3300025226 Bacteria 4013750
40 Ga0209672_100011 3300025228 Bacteria 856297
41 Ga0209147_103115 3300025229 Bacteria 3457
42 Ga0209563_100001 3300025230 Bacteria 4013775
43 Ga0209563_100155 3300025230 Bacteria 64311
44 Ga0207427_100028 3300025231 Bacteria 388949
45 Ga0209437_100698 3300025233 Bacteria 17557
46 Ga0209258_102337 3300025242 Bacteria 5013
47 Ga0209646_1000041 3300025246 Bacteria 346024
48 Ga0209677_100001 3300025253 Bacteria 4013787
49 Ga0209148_1000023 3300025254 Bacteria 680511
50 Ga0209233_1000001 3300025261 Bacteria 2992747
51 Ga0209455_1000023 3300025272 Bacteria 680449
52 Ga0209673_1038991 3300025273 Bacteria 1376
53 Ga0209051_1000630 3300025303 Bacteria 40553
54 Ga0209051_1009122 3300025303 Bacteria 5149
55 Ga0209051_1014771 3300025303 Bacteria 3626
56 Ga0209051_1027861 3300025303 Bacteria 2243
57 Ga0207647_10009043 3300025904 Bacteria 7091
58 Ga0207671_10007113 3300025914 Bacteria 9775
59 Ga0207661_10096050 3300025944 Bacteria 2479
60 Ga0207712_10000018 3300025961 Bacteria 317921
61 Ga0207678_10063739 3300026067 Bacteria 3167
62 Ga0207674_10495514 3300026116 Bacteria 1180
63 Ga0307408_100214966 3300031548 Bacteria 1565
64 Ga0307405_10092460 3300031731 Bacteria 2007
65 Ga0307406_10005223 3300031901 Bacteria 7095
66 Ga0307406_10015470 3300031901 Bacteria 4416
67 Ga0307406_10055534 3300031901 Bacteria 2532
68 Ga0307407_10191133 3300031903 Bacteria 1365
69 Ga0307416_100134079 3300032002 Bacteria 2236
70 Ga0307414_10048597 3300032004 Bacteria 2928
71 Ga0307414_10121717 3300032004 Bacteria 2007
72 Ga0307414_10163018 3300032004 Bacteria 1773
73 Ga0307414_10185382 3300032004 Bacteria 1678
74 Ga0307414_10222268 3300032004 Bacteria 1551
75 Ga0373925_0000008 3300037068 Bacteria 249158
76 Ga0395899_0073534 3300037312 Bacteria 2499
77 Ga0395900_0019597 3300037418 Bacteria 6898
78 Ga0395898_0000100 3300037466 Bacteria 226446
79 Ga0395898_0408712 3300037466 Bacteria 1294
80 Ga0395901_0494283 3300038443 Bacteria 1246
81 Ga0451793_0165128 3300041452 Bacteria 1181
82 Ga0451839_0772621 3300041496 Bacteria 1151
83 Ga0439462_0046145 3300042015 Bacteria 1167
84 Ga0466972_0098733 3300044658 Bacteria 1382
85 Ga0466965_0000455 3300044683 Bacteria 14384
86 Ga0466965_0029511 3300044683 Bacteria 2669
87 Ga0466961_0182241 3300044693 Bacteria 1303
88 Ga0466961_0185837 3300044693 Bacteria 1289
89 Ga0466970_0000403 3300044765 Bacteria 21038
90 Ga0466970_0016924 3300044765 Bacteria 3763
91 Ga0466970_0026167 3300044765 Bacteria 3058
92 Ga0466970_0133495 3300044765 Bacteria 1364
93 Ga0466970_0215102 3300044765 Bacteria 1071
94 Ga0466957_0276713 3300044842 Bacteria 1122
95 Ga0466960_0034826 3300044901 Bacteria 2349
96 Ga0466960_0178667 3300044901 Bacteria 1149
97 Ga0466958_0162276 3300045836 Bacteria 1412
98 Ga0466967_0215918 3300045976 Bacteria 1821
99 Ga0466967_0235308 3300045976 Bacteria 1745
100 Ga0466967_0409008 3300045976 Bacteria 1321
101 Ga0466967_0425130 3300045976 Bacteria 1295
102 Ga0495606_0012313 3300046507 Bacteria 6877
103 Ga0495656_0029313 3300046615 Bacteria 2215
104 Ga0495671_0230971 3300046692 Bacteria 895
105 Ga0496100_0000495 3300048903 Bacteria 19031
106 Ga0496100_0399489 3300048903 Bacteria 1046
107 Ga0496101_0000008 3300048904 Bacteria 309720
108 Ga0496101_0172306 3300048904 Bacteria 1664
109 Ga0496102_0000005 3300048905 Bacteria 481937
110 Ga0496102_0132324 3300048905 Bacteria 2336
111 Ga0496102_0239760 3300048905 Bacteria 1710
112 Ga0496103_0000002 3300048906 Bacteria 605387
113 Ga0496103_0096123 3300048906 Bacteria 1872
114 Ga0496104_0038611 3300048907 Bacteria 4468
115 Ga0496105_0044519 3300048908 Bacteria 3661
116 Ga0496105_0054922 3300048908 Bacteria 3288
117 Ga0496105_0170678 3300048908 Bacteria 1783
118 Ga0496106_0099849 3300048909 Bacteria 2250
119 Ga0496107_0003489 3300048910 Bacteria 10518
120 Ga0496107_0014066 3300048910 Bacteria 5602
121 Ga0496108_0093304 3300048911 Bacteria 2560
122 Ga0496109_0018703 3300048912 Bacteria 6091
123 Ga0496109_0059758 3300048912 Bacteria 3483
124 Ga0496112_0366180 3300048915 Bacteria 1383
125 Ga0496113_0043731 3300048916 Bacteria 3316
126 Ga0496115_0018378 3300048918 Bacteria 5366
127 Ga0496115_0027940 3300048918 Bacteria 4416
128 Ga0496115_0069526 3300048918 Bacteria 2852
129 Ga0496115_0089527 3300048918 Bacteria 2513
130 Ga0496116_0000034 3300048919 Bacteria 409567
131 Ga0496117_0000003 3300048920 Bacteria 1881097
132 Ga0496117_0009172 3300048920 Bacteria 9270
133 Ga0496117_0041942 3300048920 Bacteria 3345
134 Ga0496117_0143552 3300048920 Bacteria 1425
135 Ga0496118_0000001 3300048921 Bacteria 1881100
136 Ga0496118_0020977 3300048921 Bacteria 5771
137 Ga0496118_0030338 3300048921 Bacteria 4515
138 Ga0496119_0000127 3300048922 Bacteria 107730
139 Ga0496119_0050482 3300048922 Bacteria 2564
140 Ga0496120_0002389 3300048923 Bacteria 19126
141 Ga0496121_0000120 3300048924 Bacteria 174571
142 Ga0496121_0008003 3300048924 Bacteria 12619
143 Ga0496122_0084713 3300048925 Bacteria 2191
144 Ga0496122_0091261 3300048925 Bacteria 2075
145 Ga0496124_0004485 3300048927 Bacteria 16290
146 Ga0496125_0052686 3300048928 Bacteria 3344
147 Ga0496125_0173487 3300048928 Bacteria 1446
148 Ga0496126_0000417 3300048929 Bacteria 86182
149 Ga0496126_0004489 3300048929 Bacteria 16645
150 Ga0496126_0004570 3300048929 Bacteria 16426
151 Ga0496126_0076229 3300048929 Bacteria 2975
152 Ga0496126_0175658 3300048929 Bacteria 1822
153 Ga0501032_0035668 3300049569 Bacteria 3398
154 Ga0501032_0095918 3300049569 Bacteria 1966
155 Ga0501033_0022424 3300049570 Bacteria 4763
156 Ga0501033_0052162 3300049570 Bacteria 3031
157 Ga0501033_0080132 3300049570 Bacteria 2396
158 Ga0501034_0000382 3300049571 Bacteria 75673
159 Ga0501034_0026638 3300049571 Bacteria 5884
160 Ga0501034_0036148 3300049571 Bacteria 5005
161 Ga0501034_0091839 3300049571 Bacteria 3033
162 Ga0501034_0159606 3300049571 Bacteria 2227
163 Ga0501034_0171382 3300049571 Bacteria 2137
164 Ga0501034_0339116 3300049571 Bacteria 1433
165 Ga0501036_0376337 3300049572 Bacteria 1185
166 Ga0501037_0076102 3300049573 Bacteria 2437
167 Ga0501037_0091607 3300049573 Bacteria 2198
168 Ga0501038_0055912 3300049574 Bacteria 3389
169 Ga0501038_0198272 3300049574 Bacteria 1612
170 Ga0501039_0053371 3300049575 Bacteria 3128
171 Ga0501043_0054490 3300049579 Bacteria 3140
172 Ga0501046_0016201 3300049580 Bacteria 6248
173 Ga0501047_0037740 3300049581 Bacteria 4672
174 Ga0501047_0102857 3300049581 Bacteria 2736
175 Ga0501048_0136449 3300049582 Bacteria 1734
176 Ga0501070_0000065 3300049586 Bacteria 88506
177 Ga0501070_0001032 3300049586 Bacteria 25035
178 Ga0501035_0059167 3300049822 Bacteria 3412
179 Ga0501044_0054359 3300049823 Bacteria 4116
180 Ga0501044_0085256 3300049823 Bacteria 3192
181 Ga0501044_0133269 3300049823 Bacteria 2478
182 Ga0501044_0203184 3300049823 Bacteria 1939
183 nmdc:mga00v17_43792_c1 3300050491 Bacteria 2697
184 nmdc:mga0qj67_13104_c1 3300050509 Bacteria 6262
185 Ga0500635_0000002 3300053080 Bacteria 265613
186 Ga0500568_0004201 3300053139 Bacteria 7766
187 Ga0466962_0145525 3300061719 Bacteria 1149
188 2870803723 2870801768 Bacteria 2710986
189 2643734519 2643221542 Bacteria 3563959
190 2643783967 2643221553 Bacteria 3544260
191 2643847515 2643221566 Bacteria 3460379
192 2643997519 2643221597 Bacteria 3347721
193 2644097977 2643221616 Bacteria 4066575
194 2644172645 2643221630 Bacteria 3601215
195 2644489684 2643221687 Bacteria 6500351
196 2644678878 2643221724 Bacteria 3593515
197 2730228386 2728369380 Bacteria 3620317
198 2747955456 2747842429 Bacteria 3914386
199 2774401079 2773857763 Bacteria 4180068
200 2812325360 2811994872 Bacteria 4121241
201 2833713202 2833709550 Bacteria 4008291
202 2844843579 2844841374 Bacteria 3917147
203 2852648243 2852646457 Bacteria 3408613
204 2852666598 2852663356 Bacteria 4090475
205 2857480820 2857479173 Bacteria 2469263
206 2857633430 2857632687 Bacteria 2448521
207 2857726751 2857723135 Bacteria 4217853
208 2870628423 2870628048 Bacteria 3696012
209 2870805677 2870804320 Bacteria 2552467
210 2884766746 2884763398 Bacteria 4091164
211 2902842468 2902837492 Bacteria 6697721
212 2919055566 2919055335 Bacteria 3875751
213 2919396997 2919395869 Bacteria 3704152
214 2919525702 2919523602 Bacteria 3788128
215 2928153712 2928153084 Bacteria 4020257
216 2939587912 2939582691 Bacteria 7088898
217 2939661688 2939660829 Bacteria 3784848
218 2945970298 2945968032 Bacteria 4111363
219 2946035184 2946033335 Bacteria 3835514
220 2946042677 2946041624 Bacteria 4191385
221 2946082455 2946080515 Bacteria 4310960
222 2966923468 2966921586 Bacteria 3092803
223 2995727630 2995726249 Bacteria 3470435
224 8004183229 8004182704 Bacteria 3391155
225 8045830590 8045830549 Bacteria 4444727
226 8055036401 8055034563 Bacteria 3562128
227 8055038127 8055037949 Bacteria 3337834
228 JGI24740J21852_10023348
229 JGI24735J21928_10000910
230 JGI25164J39214_1000818
231 JGI25406J46586_10015190
232 JGI25165J46597_1000055
233 rootH2_10009211
234 JGI25407J50210_10007783
235 Ga0006562J51391_1058126
236 Ga0006562J51391_1058127
237 Ga0055539_1000019
238 Ga0055533_1000023
239 Ga0055525_1000088
240 Ga0055527_1000025
241 Ga0055542_1000048
242 Ga0055529_1000057
243 Ga0055540_1002339
244 Ga0055540_1002798
245 Ga0055540_1004377
246 Ga0070660_100034221
247 Ga0070668_100154096
248 Ga0070663_100077139
249 Ga0070684_100246241
250 Ga0068855_100108316
251 Ga0068857_100042951
252 Ga0081538_10003827
253 Ga0081539_10004169
254 Ga0081539_10070731
255 Ga0075430_100000840
256 Ga0105243_10704346
257 Ga0105249_10000013
258 Ga0157369_10584368
259 Ga0157369_10644729
260 Ga0157372_10438826
261 Ga0157372_10447942
262 Ga0157379_10015671
263 Ga0206351_10965500
264 Ga0154015_1264013
265 Ga0209566_100031
266 Ga0209674_100001
267 Ga0209672_100011
268 Ga0209147_103115
269 Ga0209563_100001
270 Ga0209563_100155
271 Ga0207427_100028
272 Ga0209437_100698
273 Ga0209258_102337
274 Ga0209646_1000041
275 Ga0209677_100001
276 Ga0209148_1000023
277 Ga0209233_1000001
278 Ga0209455_1000023
279 Ga0209673_1038991
280 Ga0209051_1000630
281 Ga0209051_1009122
282 Ga0209051_1014771
283 Ga0209051_1027861
284 Ga0207647_10009043
285 Ga0207671_10007113
286 Ga0207661_10096050
287 Ga0207712_10000018
288 Ga0207678_10063739
289 Ga0207674_10495514
290 Ga0307408_100214966
291 Ga0307405_10092460
292 Ga0307406_10005223
293 Ga0307406_10015470
294 Ga0307406_10055534
295 Ga0307407_10191133
296 Ga0307416_100134079
297 Ga0307414_10048597
298 Ga0307414_10121717
299 Ga0307414_10163018
300 Ga0307414_10185382
301 Ga0307414_10222268
302 Ga0373925_0000008
303 Ga0395899_0073534
304 Ga0395900_0019597
305 Ga0395898_0000100
306 Ga0395898_0408712
307 Ga0395901_0494283
308 Ga0451793_0165128
309 Ga0451839_0772621
310 Ga0439462_0046145
311 Ga0466972_0098733
312 Ga0466965_0000455
313 Ga0466965_0029511
314 Ga0466961_0182241
315 Ga0466961_0185837
316 Ga0466970_0000403
317 Ga0466970_0016924
318 Ga0466970_0026167
319 Ga0466970_0133495
320 Ga0466970_0215102
321 Ga0466957_0276713
322 Ga0466960_0034826
323 Ga0466960_0178667
324 Ga0466958_0162276
325 Ga0466967_0215918
326 Ga0466967_0235308
327 Ga0466967_0409008
328 Ga0466967_0425130
329 Ga0495606_0012313
330 Ga0495656_0029313
331 Ga0495671_0230971
332 Ga0496100_0000495
333 Ga0496100_0399489
334 Ga0496101_0000008
335 Ga0496101_0172306
336 Ga0496102_0000005
337 Ga0496102_0132324
338 Ga0496102_0239760
339 Ga0496103_0000002
340 Ga0496103_0096123
341 Ga0496104_0038611
342 Ga0496105_0044519
343 Ga0496105_0054922
344 Ga0496105_0170678
345 Ga0496106_0099849
346 Ga0496107_0003489
347 Ga0496107_0014066
348 Ga0496108_0093304
349 Ga0496109_0018703
350 Ga0496109_0059758
351 Ga0496112_0366180
352 Ga0496113_0043731
353 Ga0496115_0018378
354 Ga0496115_0027940
355 Ga0496115_0069526
356 Ga0496115_0089527
357 Ga0496116_0000034
358 Ga0496117_0000003
359 Ga0496117_0009172
360 Ga0496117_0041942
361 Ga0496117_0143552
362 Ga0496118_0000001
363 Ga0496118_0020977
364 Ga0496118_0030338
365 Ga0496119_0000127
366 Ga0496119_0050482
367 Ga0496120_0002389
368 Ga0496121_0000120
369 Ga0496121_0008003
370 Ga0496122_0084713
371 Ga0496122_0091261
372 Ga0496124_0004485
373 Ga0496125_0052686
374 Ga0496125_0173487
375 Ga0496126_0000417
376 Ga0496126_0004489
377 Ga0496126_0004570
378 Ga0496126_0076229
379 Ga0496126_0175658
380 Ga0501032_0035668
381 Ga0501032_0095918
382 Ga0501033_0022424
383 Ga0501033_0052162
384 Ga0501033_0080132
385 Ga0501034_0000382
386 Ga0501034_0026638
387 Ga0501034_0036148
388 Ga0501034_0091839
389 Ga0501034_0159606
390 Ga0501034_0171382
391 Ga0501034_0339116
392 Ga0501036_0376337
393 Ga0501037_0076102
394 Ga0501037_0091607
395 Ga0501038_0055912
396 Ga0501038_0198272
397 Ga0501039_0053371
398 Ga0501043_0054490
399 Ga0501046_0016201
400 Ga0501047_0037740
401 Ga0501047_0102857
402 Ga0501048_0136449
403 Ga0501070_0000065
404 Ga0501070_0001032
405 Ga0501035_0059167
406 Ga0501044_0054359
407 Ga0501044_0085256
408 Ga0501044_0133269
409 Ga0501044_0203184
410 nmdc:mga00v17_43792_c1
411 nmdc:mga0qj67_13104_c1
412 Ga0500635_0000002
413 Ga0500568_0004201
414 Ga0466962_0145525
415 2870803723
416 2643734519
417 2643783967
418 2643847515
419 2643997519
420 2644097977
421 2644172645
422 2644489684
423 2644678878
424 2730228386
425 2747955456
426 2774401079
427 2812325360
428 2833713202
429 2844843579
430 2852648243
431 2852666598
432 2857480820
433 2857633430
434 2857726751
435 2870628423
436 2870805677
437 2884766746
438 2902842468
439 2919055566
440 2919396997
441 2919525702
442 2928153712
443 2939587912
444 2939661688
445 2945970298
446 2946035184
447 2946042677
448 2946082455
449 2966923468
450 2995727630
451 8004183229
452 8045830590
453 8055036401
454 8055038127

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00056

Ldh_1_N

lactate/malate dehydrogenase, NAD binding domain

8

156

0.94

PF02866

Ldh_1_C

lactate/malate dehydrogenase, alpha/beta C-terminal domain

159

351

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wzi-assembly1.cif.gz_A structural basis for alteration of cofactor specificity of malate dehydrogenase from thermus flavus 0.968 5 321
1bmd-assembly1.cif.gz_B determinants of protein thermostability observed in the 1.9 angstroms crystal structure of malate dehydrogenase from the thermophilic bacterium thermus flavus 0.9659 5 321
2cvq-assembly1.cif.gz_B crystal structure of nad(h)-dependent malate dehydrogenase complexed with nadph 0.9655 5 321
1bdm-assembly1.cif.gz_B the structure at 1.8 angstroms resolution of a single site mutant (t189i) of malate dehydrogenase from thermus flavus with increased enzymatic activity 0.9652 5 321
3d5t-assembly2.cif.gz_C crystal structure of malate dehydrogenase from burkholderia pseudomallei 0.9652 5 317
ID Description Score Start End Superfamily
4uuoA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9824 6 151 3.40.50.720
af_Q4D123_7_158_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9813 8 151 3.40.50.720
7mdhC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9765 5 154 3.40.50.720
7mdhC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9516 5 154 3.40.50.720
af_A0A1D6HWW8_53_199_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9514 14 155 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A3C1DL03-F1-model_v4 Malate dehydrogenase (EC 1.1.1.37) 1.002 4 85 GO:0006108
GO:0030060
AF-A0A6M1ZFR5-F1-model_v4 Malate dehydrogenase (EC 1.1.1.37) 0.9951 6 87 GO:0006108
GO:0030060
AF-A0A382N203-F1-model_v4 Lactate/malate dehydrogenase N-terminal domain-containing protein 0.9942 6 91 GO:0006108
GO:0016615
AF-A0A7V9HCJ0-F1-model_v4 Malate dehydrogenase (EC 1.1.1.37) 0.9936 4 96 GO:0006108
GO:0016020
GO:0030060
AF-A0A7K2EB87-F1-model_v4 Malate dehydrogenase (EC 1.1.1.37) 0.9931 2 83 GO:0006108
GO:0030060

Map