F340654

General Info

Members Datasets Scaffolds Average Seq Length
228 169 202 955

Family's Representative Sequence

Representative Sequence 3300005338|Ga0068868_100012354|Ga0068868_1000123545
Length 993
Sequence MTETAAPKTASTNHRATLNLPETPFPMRGDLPKREPGWVKEWSDQGLYKRLRAARVGKPRFVLHDGPPYANGTLHVGHAANKILKDMIVKARQLAGFDAMYVPGWDCHGLPIENQIEKTFGRGLSRADVQARSRAFATEQIAQQMADFKRVGVLGDWEHPYLTMDFGNEAGEIRALKRIIERGFVYRGLKPVYWCFDCASSLAEFEIEYADRKSPTVDVAFMAADPGALAKAFGLPSIEKEAFAVIWTTTPWTLPANQALNLNPDLEYALVDTERGLLILASALVDKCLERYGLIGSVVATASGRGLDGLRFHHPLSALHPGYERTAPVYLADYATAEDGTGLVHSSPAYGVEDFNSCRAHGLKVEDVLNPVQGNGTYDSALPLFGGLDIWKANGAVIEALRNAGRLLATSTLVHSYPHCWRHKTPVIYRAAAQWFVRMDAPDASTAGVFAVDPSVRTLRDIALAAIEDTSFYPQNGKQRLHDMIANRPDWCISRQRNWGVPLPFFLHKDSGELHPDTLALIDRAAAIVAEGGVEAWSRLTAEEVLGAEGPHSAAHYTKVNDILDVWFDSGSTFFHVLRGSHPGTTDGAGERGQGPEADLYLEGHDQHRGWFHSSLLIACAMEGHAPYRGLLTHGFTVDGSGRKMSKSLGNFIALQDLTKKLGAEIIRLWCAATDYSGDLAIDDKILARVVDSYRRIRNTLRFVLANTSDFDPDVDAVPVGEMLELDRWALARTAALQVQIVGTFDAGRGVFHGDSESPPHYDVYEFHPVVAKLQLFCSEDLGAFYLDILKDRLYTTAPKSHGRHSAQTALWHIGHAMLRWMAPFLSFTAEEAWKVFAPGKPSIFTETYWALPDESALWAVDQRQPEQAQVRWASVIETRDRVLLDLEKARAAGLIGSSLQAEIVLRANATALAALAAFGEELKYLFIVSKVTLQQADGEATPDITVVASSASKCERCWHYRDDVGSDPSRPELCGRCTNDADLCGGETRRVA

Samples

Sample ID Description Type Environment
1 2511231002 Polaromonas sp. CF318 Isolate Rhizosphere
2 2585428057 Methylibium sp. YR605 Isolate Rhizosphere
3 2585428058 Methylibium sp. CF468 Isolate Rhizosphere
4 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
5 2588253510 Rhizobacter sp. OV335 Isolate Rhizosphere
6 2643221544 Pelomonas sp. Root1444 Isolate Unclassified
7 2643221585 Pelomonas sp. Root662 Isolate Unclassified
8 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
9 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
10 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
11 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
12 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
13 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
14 2643221656 Pelomonas sp. Root405 Isolate Unclassified
15 2643221660 Methylibium sp. Root1272 Isolate Unclassified
16 2721755523 Delftia sp. HK171 Isolate Unclassified
17 2738541337 Pelomonas sp. BT06 Isolate Unclassified
18 2738543012 Acidovorax sp. CF301 Isolate Unclassified
19 2816332133 Acidovorax radicis 2721A Isolate Unclassified
20 2831864461 Roseateles noduli HZ7 Isolate Nodule
21 2839138175 Delftia acidovorans B15 Isolate Rhizosphere
22 2886848708 Mitsuaria sp. TWR114 Isolate Rhizosphere
23 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
24 2904479285 Comamonas sediminis 4487 Isolate Rhizosphere
25 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
26 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
27 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
28 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
29 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
30 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
31 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
32 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
33 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
34 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
35 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
36 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
37 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
38 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
39 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
40 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
41 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
42 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
43 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
44 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
45 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
46 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
47 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
48 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
49 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
50 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
51 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
52 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
53 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
54 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
55 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
56 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
57 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
58 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
59 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
60 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
61 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
62 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
63 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
64 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
65 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
66 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
67 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
68 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
69 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
70 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
71 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
72 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
73 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
74 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
75 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
76 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
77 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
78 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
79 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
80 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
81 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
83 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
84 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
85 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
86 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
87 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
88 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
89 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
90 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
91 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
92 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
93 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
94 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
95 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
96 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
97 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
98 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
99 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
100 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
120 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
121 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
122 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
123 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
124 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
125 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
126 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
127 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
128 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
129 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
130 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
131 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
132 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
133 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
134 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
135 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
136 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
137 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
138 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
139 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
140 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
141 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
142 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
143 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
144 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
145 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
146 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
147 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
148 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
149 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
150 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
151 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
152 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
153 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
154 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
155 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
156 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
157 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
158 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
159 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
160 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
161 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
162 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
163 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
164 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
165 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
166 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
167 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
168 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
169 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.6
Metatranscriptomes 0
Isolates 11.4

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.05
Nodule 1.75
Rhizoplane 0.88
Rhizosphere 55.26
Stem 0
Stem Tuber 0
Unclassified 21.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25155J39150_1000053 3300002704 Bacteria 74449
2 JGI25156J39149_1000045 3300002705 Bacteria 104173
3 JGI25154J39366_1000064 3300002738 Bacteria 104148
4 JGI25154J39366_1003150 3300002738 Bacteria 3662
5 JGI25157J39369_1000063 3300002741 Bacteria 104173
6 JGI25157J39369_1000114 3300002741 Bacteria 68725
7 JGI25157J39369_1000232 3300002741 Bacteria 43715
8 JGI25150J39212_1004170 3300002774 Bacteria 3257
9 JGI25160J50197_1000266 3300003354 Bacteria 39187
10 JGI25161J50226_1000081 3300003374 Bacteria 78703
11 Ga0055533_1000024 3300003756 Bacteria 338067
12 Ga0055535_1000156 3300003761 Bacteria 72919
13 Ga0055529_1000382 3300003763 Bacteria 48005
14 Ga0055537_1001597 3300003773 Bacteria 8550
15 Ga0055524_1000555 3300003775 Bacteria 28203
16 Ga0055524_1000688 3300003775 Bacteria 23706
17 Ga0055534_1002214 3300003784 Bacteria 6900
18 Ga0055530_10000317 3300003791 Bacteria 43667
19 Ga0055531_10000060 3300003794 Bacteria 120626
20 Ga0055531_10000493 3300003794 Bacteria 36200
21 Ga0055543_1001189 3300004625 Bacteria 10959
22 Ga0065165_1000166 3300005262 Bacteria 115866
23 Ga0070690_100020427 3300005330 Bacteria 4035
24 Ga0070670_100002818 3300005331 Bacteria 14375
25 Ga0070666_10007786 3300005335 Bacteria 6617
26 Ga0070666_10008222 3300005335 Bacteria 6467
27 Ga0070680_100005771 3300005336 Bacteria 9394
28 Ga0068868_100000620 3300005338 Bacteria 23878
29 Ga0068868_100012354 3300005338 Bacteria 6240
30 Ga0070669_100002119 3300005353 Bacteria 14347
31 Ga0070675_100000657 3300005354 Bacteria 23889
32 Ga0070675_100016279 3300005354 Bacteria 5898
33 Ga0070671_100003866 3300005355 Bacteria 11774
34 Ga0070667_100002006 3300005367 Bacteria 18030
35 Ga0070667_100002434 3300005367 Bacteria 16267
36 Ga0070678_100000860 3300005456 Bacteria 15490
37 Ga0068867_100000090 3300005459 Bacteria 57958
38 Ga0070679_100002349 3300005530 Bacteria 17131
39 Ga0070672_100001473 3300005543 Bacteria 14611
40 Ga0070672_100002244 3300005543 Bacteria 12185
41 Ga0068855_100001598 3300005563 Bacteria 28464
42 Ga0068857_100009698 3300005577 Bacteria 8366
43 Ga0068856_100002268 3300005614 Bacteria 19839
44 Ga0068856_100035671 3300005614 Bacteria 4874
45 Ga0068864_100000413 3300005618 Bacteria 37037
46 Ga0068864_100064475 3300005618 Bacteria 3177
47 Ga0068861_100001840 3300005719 Bacteria 13641
48 Ga0068863_100001085 3300005841 Bacteria 27245
49 Ga0068863_100002661 3300005841 Bacteria 17666
50 Ga0068863_100020645 3300005841 Bacteria 6293
51 Ga0068863_100058054 3300005841 Bacteria 3662
52 Ga0068858_100009756 3300005842 Bacteria 9145
53 Ga0068860_100002705 3300005843 Bacteria 18444
54 Ga0075365_10000764 3300006038 Bacteria 13078
55 Ga0097621_100007520 3300006237 Bacteria 7800
56 Ga0075370_10000264 3300006353 Bacteria 18889
57 Ga0068871_100029280 3300006358 Bacteria 4322
58 Ga0068871_100038359 3300006358 Bacteria 3826
59 Ga0079104_1000055 3300006946 Bacteria 166522
60 Ga0105240_10003282 3300009093 Bacteria 25301
61 Ga0105243_10015306 3300009148 Bacteria 5803
62 Ga0105242_10011522 3300009176 Bacteria 6799
63 Ga0105248_10043076 3300009177 Bacteria 5062
64 Ga0105237_10006644 3300009545 Bacteria 12782
65 Ga0105249_10004145 3300009553 Bacteria 12516
66 Ga0105239_10033413 3300010375 Bacteria 5649
67 Ga0105239_10037009 3300010375 Bacteria 5353
68 Ga0157369_10014689 3300013105 Bacteria 8836
69 Ga0157374_10008973 3300013296 Bacteria 8572
70 Ga0157379_10003293 3300014968 Bacteria 13668
71 Ga0209435_100003 3300025206 Bacteria 669534
72 Ga0209674_100007 3300025226 Bacteria 1077082
73 Ga0209563_100060 3300025230 Bacteria 284876
74 Ga0207427_101772 3300025231 Bacteria 7007
75 Ga0207425_1004119 3300025245 Bacteria 4444
76 Ga0209646_1000008 3300025246 Bacteria 669534
77 Ga0209646_1000056 3300025246 Bacteria 269860
78 Ga0209026_1000007 3300025250 Bacteria 669534
79 Ga0209026_1000009 3300025250 Bacteria 531812
80 Ga0209677_100088 3300025253 Bacteria 108817
81 Ga0209677_100112 3300025253 Bacteria 85460
82 Ga0209759_1000019 3300025256 Bacteria 357908
83 Ga0209759_1000035 3300025256 Bacteria 264254
84 Ga0209565_1000043 3300025263 Bacteria 235332
85 Ga0209455_1000108 3300025272 Bacteria 193021
86 Ga0209673_1000008 3300025273 Bacteria 626013
87 Ga0209673_1005828 3300025273 Bacteria 6106
88 Ga0209130_1000110 3300025284 Bacteria 133258
89 Ga0209675_1000170 3300025291 Bacteria 78095
90 Ga0209675_1006801 3300025291 Bacteria 4512
91 Ga0209564_1000931 3300025295 Bacteria 37971
92 Ga0209050_1000268 3300025298 Bacteria 111281
93 Ga0209050_1002927 3300025298 Bacteria 13380
94 Ga0209050_1008996 3300025298 Bacteria 5203
95 Ga0209256_1000001 3300025299 Bacteria 2166974
96 Ga0207426_1000117 3300025302 Bacteria 224652
97 Ga0209051_1000173 3300025303 Bacteria 117170
98 Ga0209257_1000096 3300025304 Bacteria 259390
99 Ga0209257_1000103 3300025304 Bacteria 245859
100 Ga0207656_10007079 3300025321 Bacteria 4073
101 Ga0207680_10013328 3300025903 Bacteria 4220
102 Ga0207707_10020935 3300025912 Bacteria 5714
103 Ga0207671_10009766 3300025914 Bacteria 7987
104 Ga0207650_10003478 3300025925 Bacteria 10820
105 Ga0207659_10000687 3300025926 Bacteria 20128
106 Ga0207659_10004785 3300025926 Bacteria 8207
107 Ga0207659_10024414 3300025926 Bacteria 4050
108 Ga0207644_10006520 3300025931 Bacteria 7611
109 Ga0207709_10000273 3300025935 Bacteria 60743
110 Ga0207691_10002948 3300025940 Bacteria 16608
111 Ga0207691_10016883 3300025940 Bacteria 6926
112 Ga0207691_10038429 3300025940 Bacteria 4429
113 Ga0207689_10000381 3300025942 Bacteria 41638
114 Ga0207689_10003395 3300025942 Bacteria 14545
115 Ga0207667_10003369 3300025949 Bacteria 19715
116 Ga0207667_10008091 3300025949 Bacteria 12535
117 Ga0207651_10002880 3300025960 Bacteria 8300
118 Ga0207658_10001465 3300025986 Bacteria 18398
119 Ga0207658_10002209 3300025986 Bacteria 14447
120 Ga0207658_10012250 3300025986 Bacteria 5853
121 Ga0207677_10002228 3300026023 Bacteria 10182
122 Ga0207703_10001315 3300026035 Bacteria 22873
123 Ga0207703_10012714 3300026035 Bacteria 6563
124 Ga0207678_10011869 3300026067 Bacteria 7650
125 Ga0207702_10000501 3300026078 Bacteria 44092
126 Ga0207641_10001191 3300026088 Bacteria 26088
127 Ga0207641_10001734 3300026088 Bacteria 21053
128 Ga0207648_10000056 3300026089 Bacteria 105754
129 Ga0207676_10000453 3300026095 Bacteria 34510
130 Ga0207675_100005451 3300026118 Bacteria 12189
131 Ga0207675_100005477 3300026118 Bacteria 12159
132 Ga0207683_10003950 3300026121 Bacteria 12866
133 Ga0209281_1000007 3300027111 Bacteria 938265
134 Ga0268264_10002109 3300028381 Bacteria 17727
135 Ga0268264_10010525 3300028381 Bacteria 7647
136 Ga0307517_10003395 3300028786 Bacteria 24788
137 Ga0307515_10001016 3300028794 Bacteria 64080
138 Ga0307515_10001259 3300028794 Bacteria 57802
139 Ga0307515_10003304 3300028794 Bacteria 34085
140 Ga0307515_10011684 3300028794 Bacteria 16627
141 Ga0307515_10025016 3300028794 Bacteria 10358
142 Ga0307515_10041708 3300028794 Bacteria 7204
143 Ga0265332_10000020 3300031238 Bacteria 219119
144 Ga0307513_10000129 3300031456 Bacteria 106759
145 Ga0307509_10001694 3300031507 Bacteria 36817
146 Ga0307408_100018532 3300031548 Bacteria 4674
147 Ga0307508_10000098 3300031616 Bacteria 103295
148 Ga0307508_10008650 3300031616 Bacteria 9396
149 Ga0307514_10009535 3300031649 Bacteria 8154
150 Ga0265314_10003400 3300031711 Bacteria 15415
151 Ga0307516_10000054 3300031730 Bacteria 126288
152 Ga0307516_10001663 3300031730 Bacteria 30602
153 Ga0307516_10002945 3300031730 Bacteria 22297
154 Ga0307516_10003686 3300031730 Bacteria 19470
155 Ga0307516_10004904 3300031730 Bacteria 16277
156 Ga0307406_10016583 3300031901 Bacteria 4284
157 Ga0307409_100009857 3300031995 Bacteria 5896
158 Ga0307416_100003945 3300032002 Bacteria 8835
159 Ga0307411_10001658 3300032005 Bacteria 9302
160 Ga0307510_10003809 3300033180 Bacteria 17665
161 Ga0395899_0008613 3300037312 Bacteria 7847
162 Ga0395900_0057609 3300037418 Bacteria 4000
163 Ga0395898_0006253 3300037466 Bacteria 12742
164 Ga0395905_0000025 3300037471 Bacteria 317571
165 Ga0395905_0001157 3300037471 Bacteria 33035
166 Ga0395905_0005563 3300037471 Bacteria 12847
167 Ga0395905_0006782 3300037471 Bacteria 11475
168 Ga0395905_0030307 3300037471 Bacteria 5098
169 Ga0395905_0045807 3300037471 Bacteria 4102
170 Ga0395901_0007797 3300038443 Bacteria 10801
171 Ga0395901_0008919 3300038443 Bacteria 10160
172 Ga0395901_0014071 3300038443 Bacteria 8146
173 Ga0451577_0001391 3300042876 Bacteria 32378
174 Ga0453683_0003786 3300044673 Bacteria 11023
175 Ga0453684_0028384 3300044712 Bacteria 7985
176 Ga0495592_0009651 3300046454 Bacteria 7263
177 Ga0495583_0000200 3300046506 Bacteria 100827
178 Ga0495606_0002589 3300046507 Bacteria 20694
179 Ga0495632_0007209 3300046519 Bacteria 7020
180 Ga0495625_0013651 3300046660 Bacteria 6515
181 Ga0495649_0036364 3300046694 Bacteria 2705
182 Ga0495687_000915 3300047443 Bacteria 30729
183 Ga0496106_0006777 3300048909 Bacteria 8481
184 Ga0496114_0090380 3300048917 Bacteria 2599
185 Ga0496121_0012233 3300048924 Bacteria 9398
186 Ga0496124_0000786 3300048927 Bacteria 51804
187 Ga0501034_0065696 3300049571 Bacteria 3640
188 Ga0501043_0000002 3300049579 Bacteria 351081
189 Ga0501043_0022743 3300049579 Bacteria 4916
190 Ga0501046_0000008 3300049580 Bacteria 351167
191 Ga0501047_0000003 3300049581 Bacteria 508375
192 Ga0501047_0005092 3300049581 Bacteria 12331
193 Ga0501048_0033688 3300049582 Bacteria 3699
194 nmdc:mga07m45_149_c1 3300050496 Bacteria 28005
195 nmdc:mga07m45_1825_c1 3300050496 Bacteria 9823
196 Ga0500635_0000185 3300053080 Bacteria 32054
197 Ga0500578_0000011 3300053086 Bacteria 217243
198 Ga0500652_000660 3300053131 Bacteria 11742
199 Ga0500559_0000014 3300053136 Bacteria 160139
200 Ga0500619_000073 3300053154 Bacteria 28363
201 Ga0500622_0000097 3300053156 Bacteria 89802
202 Ga0500622_0002300 3300053156 Bacteria 13996

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049582 Ga0501048_0033688 Ga0501048_0033688_1279_3657 755
2 3300049579 Ga0501043_0022743 Ga0501043_0022743_15_2384 774
3 3300048909 Ga0496106_0006777 Ga0496106_0006777_6012_8468 784
4 3300048917 Ga0496114_0090380 Ga0496114_0090380_130_2586 784
5 3300049571 Ga0501034_0065696 Ga0501034_0065696_11_2434 792
6 iso_pu_bacteria 2886848708 2886850188 811
7 3300038443 Ga0395901_0007797 Ga0395901_0007797_8181_10790 859
8 3300046694 Ga0495649_0036364 Ga0495649_0036364_47_2695 874
9 3300003794 Ga0055531_10000060 Ga0055531_1000006065 911
10 3300025298 Ga0209050_1008996 Ga0209050_10089962 911
11 3300025304 Ga0209257_1000103 Ga0209257_1000103133 911
12 3300005262 Ga0065165_1000166 Ga0065165_100016648 912
13 3300049579 Ga0501043_0000002 Ga0501043_0000002_19658_22546 912
14 3300049580 Ga0501046_0000008 Ga0501046_0000008_19741_22629 912
15 3300049581 Ga0501047_0000003 Ga0501047_0000003_42923_45811 912
16 3300032005 Ga0307411_10001658 Ga0307411_100016588 914
17 3300005459 Ga0068867_100000090 Ga0068867_10000009030 918
18 3300010375 Ga0105239_10033413 Ga0105239_100334133 918
19 3300026089 Ga0207648_10000056 Ga0207648_1000005669 918
20 3300006353 Ga0075370_10000264 Ga0075370_1000026410 926
21 3300050496 nmdc:mga07m45_149_c1 nmdc:mga07m45_149_c1_15267_18173 926
22 3300028786 Ga0307517_10003395 Ga0307517_100033956 928
23 3300009093 Ga0105240_10003282 Ga0105240_100032822 931
24 3300049581 Ga0501047_0005092 Ga0501047_0005092_2339_5197 931
25 iso_pu_bacteria 2643221544 2643746852 931
26 iso_pu_bacteria 2643221585 2643935608 931
27 iso_pu_bacteria 2643221639 2644221072 931
28 iso_pu_bacteria 2643221646 2644259914 931
29 iso_pu_bacteria 2643221656 2644317391 931
30 iso_pu_bacteria 2643221660 2644338754 931
31 iso_pu_bacteria 2738541337 2739057574 931
32 iso_pu_bacteria 2585428062 2587755685 932
33 iso_pu_bacteria 2585428057 2587727917 933
34 iso_pu_bacteria 2585428058 2587733778 933
35 iso_pu_bacteria 2588253510 2588291692 933
36 iso_pu_bacteria 2643221592 2643972479 933
37 iso_pu_bacteria 2643221625 2644138513 933
38 iso_pu_bacteria 2643221648 2644272987 933
39 iso_pu_bacteria 2721755523 2722882084 933
40 iso_pu_bacteria 2831864461 2831868431 933
41 iso_pu_bacteria 2839138175 2839142596 933
42 iso_pu_bacteria 2904479285 2904483204 933
43 3300025273 Ga0209673_1005828 Ga0209673_10058282 934
44 3300025298 Ga0209050_1000268 Ga0209050_100026865 934
45 3300053086 Ga0500578_0000011 Ga0500578_0000011_40366_43224 934
46 3300053156 Ga0500622_0000097 Ga0500622_0000097_9320_12178 934
47 3300028794 Ga0307515_10011684 Ga0307515_100116845 935
48 3300031507 Ga0307509_10001694 Ga0307509_1000169437 935
49 3300031548 Ga0307408_100018532 Ga0307408_1000185322 935
50 3300031616 Ga0307508_10008650 Ga0307508_100086504 935
51 3300031649 Ga0307514_10009535 Ga0307514_100095353 935
52 3300031901 Ga0307406_10016583 Ga0307406_100165832 935
53 3300031995 Ga0307409_100009857 Ga0307409_1000098572 935
54 3300032002 Ga0307416_100003945 Ga0307416_1000039457 935
55 3300042876 Ga0451577_0001391 Ga0451577_0001391_28589_31567 935
56 3300044712 Ga0453684_0028384 Ga0453684_0028384_2812_5790 935
57 3300046454 Ga0495592_0009651 Ga0495592_0009651_2152_5010 935
58 3300053136 Ga0500559_0000014 Ga0500559_0000014_67265_70111 935
59 3300053156 Ga0500622_0002300 Ga0500622_0002300_2524_5370 935
60 3300005563 Ga0068855_100001598 Ga0068855_10000159818 936
61 3300005841 Ga0068863_100058054 Ga0068863_1000580541 936
62 3300025949 Ga0207667_10003369 Ga0207667_100033699 936
63 3300028794 Ga0307515_10001259 Ga0307515_1000125949 936
64 3300031238 Ga0265332_10000020 Ga0265332_1000002021 936
65 3300031616 Ga0307508_10000098 Ga0307508_1000009846 936
66 3300031711 Ga0265314_10003400 Ga0265314_100034002 936
67 3300031730 Ga0307516_10001663 Ga0307516_100016638 936
68 3300037312 Ga0395899_0008613 Ga0395899_0008613_4836_7691 936
69 3300037418 Ga0395900_0057609 Ga0395900_0057609_206_3061 936
70 3300037466 Ga0395898_0006253 Ga0395898_0006253_8242_11097 936
71 3300037471 Ga0395905_0000025 Ga0395905_0000025_232456_235311 936
72 3300037471 Ga0395905_0001157 Ga0395905_0001157_16217_19075 936
73 3300037471 Ga0395905_0006782 Ga0395905_0006782_5982_8837 936
74 3300037471 Ga0395905_0045807 Ga0395905_0045807_249_3089 936
75 3300038443 Ga0395901_0008919 Ga0395901_0008919_3071_5926 936
76 3300048924 Ga0496121_0012233 Ga0496121_0012233_3615_6455 936
77 iso_pu_bacteria 2928115317 2928120789 936
78 3300002738 JGI25154J39366_1003150 JGI25154J39366_10031502 937
79 3300002741 JGI25157J39369_1000114 JGI25157J39369_100011416 937
80 3300002741 JGI25157J39369_1000232 JGI25157J39369_100023217 937
81 3300003756 Ga0055533_1000024 Ga0055533_1000024138 937
82 3300003761 Ga0055535_1000156 Ga0055535_100015626 937
83 3300003763 Ga0055529_1000382 Ga0055529_100038243 937
84 3300003791 Ga0055530_10000317 Ga0055530_1000031739 937
85 3300003794 Ga0055531_10000493 Ga0055531_1000049332 937
86 3300005338 Ga0068868_100012354 Ga0068868_1000123545 937
87 3300005354 Ga0070675_100016279 Ga0070675_1000162793 937
88 3300005614 Ga0068856_100002268 Ga0068856_10000226810 937
89 3300006038 Ga0075365_10000764 Ga0075365_100007648 937
90 3300006358 Ga0068871_100038359 Ga0068871_1000383592 937
91 3300006946 Ga0079104_1000055 Ga0079104_1000055139 937
92 3300009148 Ga0105243_10015306 Ga0105243_100153063 937
93 3300009545 Ga0105237_10006644 Ga0105237_100066448 937
94 3300010375 Ga0105239_10037009 Ga0105239_100370094 937
95 3300025226 Ga0209674_100007 Ga0209674_100007182 937
96 3300025230 Ga0209563_100060 Ga0209563_10006086 937
97 3300025231 Ga0207427_101772 Ga0207427_1017722 937
98 3300025246 Ga0209646_1000056 Ga0209646_100005639 937
99 3300025250 Ga0209026_1000009 Ga0209026_1000009239 937
100 3300025253 Ga0209677_100088 Ga0209677_10008870 937
101 3300025253 Ga0209677_100112 Ga0209677_10011236 937
102 3300025256 Ga0209759_1000035 Ga0209759_1000035224 937
103 3300025272 Ga0209455_1000108 Ga0209455_1000108131 937
104 3300025303 Ga0209051_1000173 Ga0209051_100017356 937
105 3300025304 Ga0209257_1000096 Ga0209257_100009665 937
106 3300025914 Ga0207671_10009766 Ga0207671_100097664 937
107 3300025925 Ga0207650_10003478 Ga0207650_100034788 937
108 3300025926 Ga0207659_10000687 Ga0207659_100006879 937
109 3300025935 Ga0207709_10000273 Ga0207709_1000027343 937
110 3300025940 Ga0207691_10016883 Ga0207691_100168833 937
111 3300025949 Ga0207667_10008091 Ga0207667_100080917 937
112 3300026067 Ga0207678_10011869 Ga0207678_100118696 937
113 3300026078 Ga0207702_10000501 Ga0207702_1000050112 937
114 3300026118 Ga0207675_100005477 Ga0207675_1000054776 937
115 3300027111 Ga0209281_1000007 Ga0209281_1000007690 937
116 3300028794 Ga0307515_10003304 Ga0307515_1000330424 937
117 3300031456 Ga0307513_10000129 Ga0307513_1000012937 937
118 3300031730 Ga0307516_10000054 Ga0307516_1000005428 937
119 3300031730 Ga0307516_10002945 Ga0307516_1000294514 937
120 3300031730 Ga0307516_10003686 Ga0307516_100036868 937
121 3300031730 Ga0307516_10004904 Ga0307516_1000490411 937
122 3300033180 Ga0307510_10003809 Ga0307510_100038097 937
123 3300037471 Ga0395905_0005563 Ga0395905_0005563_4382_7255 937
124 3300037471 Ga0395905_0030307 Ga0395905_0030307_67_2928 937
125 3300038443 Ga0395901_0014071 Ga0395901_0014071_1124_3988 937
126 3300044673 Ga0453683_0003786 Ga0453683_0003786_1602_4493 937
127 3300046506 Ga0495583_0000200 Ga0495583_0000200_85310_88186 937
128 3300046507 Ga0495606_0002589 Ga0495606_0002589_6011_8887 937
129 3300046660 Ga0495625_0013651 Ga0495625_0013651_84_2960 937
130 3300048927 Ga0496124_0000786 Ga0496124_0000786_31153_34086 937
131 3300050496 nmdc:mga07m45_1825_c1 nmdc:mga07m45_1825_c1_4387_7236 937
132 3300053080 Ga0500635_0000185 Ga0500635_0000185_26536_29487 937
133 3300053131 Ga0500652_000660 Ga0500652_000660_1615_4473 937
134 3300053154 Ga0500619_000073 Ga0500619_000073_16995_19841 937
135 iso_pu_bacteria 2738543012 2739241121 937
136 iso_pu_bacteria 2816332133 2816471801 937
137 iso_pu_bacteria 2894023352 2894024184 937
138 iso_pu_bacteria 2932422444 2932426562 937
139 iso_pu_bacteria 2511231002 2511242968 938
140 3300028794 Ga0307515_10025016 Ga0307515_100250168 940
141 iso_pu_bacteria 2643221654 2644302512 940
142 3300002774 JGI25150J39212_1004170 JGI25150J39212_10041701 941
143 3300005330 Ga0070690_100020427 Ga0070690_1000204272 941
144 3300005331 Ga0070670_100002818 Ga0070670_10000281813 941
145 3300005335 Ga0070666_10007786 Ga0070666_100077863 941
146 3300005335 Ga0070666_10008222 Ga0070666_100082224 941
147 3300005336 Ga0070680_100005771 Ga0070680_1000057718 941
148 3300005338 Ga0068868_100000620 Ga0068868_10000062012 941
149 3300005353 Ga0070669_100002119 Ga0070669_1000021199 941
150 3300005354 Ga0070675_100000657 Ga0070675_10000065714 941
151 3300005355 Ga0070671_100003866 Ga0070671_1000038667 941
152 3300005367 Ga0070667_100002006 Ga0070667_1000020064 941
153 3300005367 Ga0070667_100002434 Ga0070667_1000024349 941
154 3300005456 Ga0070678_100000860 Ga0070678_1000008608 941
155 3300005530 Ga0070679_100002349 Ga0070679_1000023496 941
156 3300005543 Ga0070672_100001473 Ga0070672_1000014737 941
157 3300005543 Ga0070672_100002244 Ga0070672_1000022445 941
158 3300005577 Ga0068857_100009698 Ga0068857_1000096985 941
159 3300005614 Ga0068856_100035671 Ga0068856_1000356712 941
160 3300005618 Ga0068864_100000413 Ga0068864_10000041328 941
161 3300005618 Ga0068864_100064475 Ga0068864_1000644752 941
162 3300005719 Ga0068861_100001840 Ga0068861_1000018405 941
163 3300005841 Ga0068863_100001085 Ga0068863_1000010853 941
164 3300005841 Ga0068863_100002661 Ga0068863_1000026619 941
165 3300005841 Ga0068863_100020645 Ga0068863_1000206452 941
166 3300005842 Ga0068858_100009756 Ga0068858_1000097566 941
167 3300005843 Ga0068860_100002705 Ga0068860_10000270510 941
168 3300006237 Ga0097621_100007520 Ga0097621_1000075203 941
169 3300006358 Ga0068871_100029280 Ga0068871_1000292802 941
170 3300009176 Ga0105242_10011522 Ga0105242_100115222 941
171 3300009177 Ga0105248_10043076 Ga0105248_100430763 941
172 3300009553 Ga0105249_10004145 Ga0105249_100041454 941
173 3300013105 Ga0157369_10014689 Ga0157369_100146897 941
174 3300013296 Ga0157374_10008973 Ga0157374_100089734 941
175 3300014968 Ga0157379_10003293 Ga0157379_100032938 941
176 3300025245 Ga0207425_1004119 Ga0207425_10041193 941
177 3300025291 Ga0209675_1006801 Ga0209675_10068013 941
178 3300025321 Ga0207656_10007079 Ga0207656_100070792 941
179 3300025903 Ga0207680_10013328 Ga0207680_100133282 941
180 3300025912 Ga0207707_10020935 Ga0207707_100209353 941
181 3300025926 Ga0207659_10004785 Ga0207659_100047853 941
182 3300025926 Ga0207659_10024414 Ga0207659_100244142 941
183 3300025931 Ga0207644_10006520 Ga0207644_100065204 941
184 3300025940 Ga0207691_10002948 Ga0207691_100029486 941
185 3300025940 Ga0207691_10038429 Ga0207691_100384292 941
186 3300025942 Ga0207689_10000381 Ga0207689_100003817 941
187 3300025942 Ga0207689_10003395 Ga0207689_100033957 941
188 3300025960 Ga0207651_10002880 Ga0207651_100028805 941
189 3300025986 Ga0207658_10001465 Ga0207658_1000146510 941
190 3300025986 Ga0207658_10002209 Ga0207658_100022097 941
191 3300025986 Ga0207658_10012250 Ga0207658_100122503 941
192 3300026023 Ga0207677_10002228 Ga0207677_100022282 941
193 3300026035 Ga0207703_10001315 Ga0207703_1000131514 941
194 3300026035 Ga0207703_10012714 Ga0207703_100127142 941
195 3300026088 Ga0207641_10001191 Ga0207641_1000119117 941
196 3300026088 Ga0207641_10001734 Ga0207641_1000173412 941
197 3300026095 Ga0207676_10000453 Ga0207676_1000045329 941
198 3300026118 Ga0207675_100005451 Ga0207675_1000054514 941
199 3300026121 Ga0207683_10003950 Ga0207683_100039504 941
200 3300028381 Ga0268264_10002109 Ga0268264_100021098 941
201 3300028381 Ga0268264_10010525 Ga0268264_100105254 941
202 3300028794 Ga0307515_10001016 Ga0307515_1000101612 941
203 3300028794 Ga0307515_10041708 Ga0307515_100417085 941
204 3300046519 Ga0495632_0007209 Ga0495632_0007209_3443_6304 941
205 3300047443 Ga0495687_000915 Ga0495687_000915_22213_25083 941
206 3300003354 JGI25160J50197_1000266 JGI25160J50197_10002665 942
207 3300003374 JGI25161J50226_1000081 JGI25161J50226_100008161 942
208 3300003773 Ga0055537_1001597 Ga0055537_10015972 942
209 3300003775 Ga0055524_1000555 Ga0055524_100055523 942
210 3300003775 Ga0055524_1000688 Ga0055524_100068818 942
211 3300003784 Ga0055534_1002214 Ga0055534_10022146 942
212 3300004625 Ga0055543_1001189 Ga0055543_10011895 942
213 3300025263 Ga0209565_1000043 Ga0209565_100004386 942
214 3300025273 Ga0209673_1000008 Ga0209673_1000008313 942
215 3300025284 Ga0209130_1000110 Ga0209130_100011097 942
216 3300025291 Ga0209675_1000170 Ga0209675_100017029 942
217 3300025295 Ga0209564_1000931 Ga0209564_10009312 942
218 3300025298 Ga0209050_1002927 Ga0209050_10029275 942
219 3300025299 Ga0209256_1000001 Ga0209256_10000011588 942
220 3300025302 Ga0207426_1000117 Ga0207426_1000117175 942
221 3300002704 JGI25155J39150_1000053 JGI25155J39150_100005364 953
222 3300002705 JGI25156J39149_1000045 JGI25156J39149_10000455 953
223 3300002738 JGI25154J39366_1000064 JGI25154J39366_100006494 953
224 3300002741 JGI25157J39369_1000063 JGI25157J39369_100006394 953
225 3300025206 Ga0209435_100003 Ga0209435_100003518 953
226 3300025246 Ga0209646_1000008 Ga0209646_1000008518 953
227 3300025250 Ga0209026_1000007 Ga0209026_1000007518 953
228 3300025256 Ga0209759_1000019 Ga0209759_1000019239 953

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00133

tRNA-synt_1

tRNA synthetases class I (I, L, M and V)

37

683

0.97

PF06827

zf-FPG_IleRS

Zinc finger found in FPG and IleRS

952

980

0.95

PF13603

tRNA-synt_1_2

Leucyl-tRNA synthetase, editing domain

285

386

0.9

PF08264

Anticodon_1

Anticodon-binding domain of tRNA ligase

757

906

0.87

PF09334

tRNA-synt_1g

tRNA synthetases class I (M)

62

215

0.69

Structural Annotation

Top 5 Hits

ID Description Score Start End
1udz-assembly2.cif.gz_B isoleucyl-trna synthetase editing domain 0.9298 210 405
1wny-assembly1.cif.gz_A isoleucyl-trna synthetase editing domain 0.9285 210 405
1ue0-assembly2.cif.gz_B isoleucyl-trna synthetase editing domain complexed with l-valine 0.9247 209 405
1udz-assembly2.cif.gz_B isoleucyl-trna synthetase editing domain 0.9148 210 405
1ue0-assembly2.cif.gz_B isoleucyl-trna synthetase editing domain complexed with l-valine 0.9099 209 405
ID Description Score Start End Superfamily
1qu3A04 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.9721 666 808 1.10.730.10
af_P00956_215_378_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9481 217 385 3.90.740.10
1ileA02 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9359 202 415 3.90.740.10
af_P00956_215_378_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9313 217 385 3.90.740.10
1ileA02 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9312 202 415 3.90.740.10
ID Description Score Start End GO Terms
AF-A0A258SP92-F1-model_v4 Isoleucine--tRNA ligase 0.9648 668 953 GO:0000049
GO:0004822
GO:0005524
GO:0005829
GO:0006428
AF-A0A520C863-F1-model_v4 Isoleucine--tRNA ligase 0.9605 769 953 GO:0004822
GO:0005524
GO:0005829
GO:0006428
AF-A0A7R9NFL4-F1-model_v4 deleted 0.9586 577 893
AF-A0A258SP92-F1-model_v4 Isoleucine--tRNA ligase 0.9581 668 953 GO:0000049
GO:0004822
GO:0005524
GO:0005829
GO:0006428
AF-K2G2U8-F1-model_v4 Isoleucine--tRNA ligase 0.958 467 953 GO:0000049
GO:0004822
GO:0005524
GO:0005829
GO:0006428

Feature Viewer

pLDDT pTM Quality
83.12 0.72 High
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Predicted Structure (AlphaFold2)

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