F341879

General Info

Members Datasets Scaffolds Average Seq Length
229 182 458 470

Family's Representative Sequence

Representative Sequence 3300005985|Ga0081539_10022155|Ga0081539_100221553
Length 537
Sequence MPKTLAELIAAVPQQAVVTGDAAIEITAPVVESDAEVQPGGVFVARTGMSVDGHDFIPRAIERGAAAIVGEKPITDLPIPYVQFENAQEAVGFLAAAYHDFPSRKLIVIGVTGTDGKTTTSTLIHSILREASKGRAGLISTISADVGDQSLDTGLHVTTPGAPQIQALLAQMVANGLQYAVLEMTSHGLAQGRLNGVDLDVAVLTNVTHEHLDYHKTFENYRAAKGRMFEMLGKSDRKNGRLKLAVINGDDPNADYFIKIVNKAVSASGTSGGATTYGLHSGYWKPLDVRYEPNGTHIFMASMLPDTTELYDEPTEFFTPLIGEFNVMNALAAITTTSWLLRYSGIRAMQRGIEAVTAISGRMERIDEGQDFLSLVDFAHTPNALENVLKACRKMLSEGGRVIAVIGSAGLRDREKRRLMAEVAARLADFTVLTAEDPRTESLDAILETMAQASIAAGGVEGETFIRVPDRGEALYRACQMARKGDIVIACGKGHEQSMAFGTVEYPWDDREAMRAALRGEPLKTLPTASGDRPAEG

Samples

Sample ID Description Type Environment
1 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
4 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
5 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
7 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
8 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
14 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
15 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
16 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
17 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
18 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
19 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
20 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
21 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
22 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
23 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
24 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
25 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
26 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
29 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
30 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
31 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
32 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
33 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
34 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
49 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
51 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
52 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
53 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
54 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
55 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
56 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
57 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
58 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
59 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
60 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
61 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
62 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
63 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
64 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
65 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
66 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
67 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
68 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
69 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
70 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
71 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
72 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
73 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
74 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
75 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
76 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
77 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
78 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
79 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
80 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
81 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
82 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
83 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
84 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
85 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
86 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
87 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
88 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
89 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
90 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
91 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
92 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
93 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
94 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
95 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
96 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
97 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
98 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
99 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
100 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
101 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
102 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
103 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
104 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
105 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
106 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
107 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
108 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
109 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
110 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
111 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
112 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
113 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
114 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
115 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
116 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
117 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
118 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
119 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
120 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
121 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
122 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
123 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
124 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
126 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
127 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
128 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
129 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
130 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
131 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
132 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
133 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
134 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
135 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
136 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
137 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
138 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
139 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
140 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
141 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
142 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
143 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
144 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
145 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
146 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
147 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
148 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
149 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
150 2703719227 Bacillus mycoides GOE6 Isolate Rhizosphere
151 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
152 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
153 2738541358 Bacillus sp. OV752 Isolate Unclassified
154 2738543006 Bacillus sp. OK077 Isolate Unclassified
155 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
156 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
157 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
158 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
159 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
160 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
161 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
162 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
163 2881644220 Siminovitchia terrae LMG 29736 Isolate Rhizosphere
164 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
165 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
166 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
167 2916971899 Alkalihalobacillus miscanthi AK13 Isolate Rhizosphere
168 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
169 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
170 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
171 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
172 2965761152 Bacillus sp. COPE52 Isolate Unclassified
173 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
174 2979083700 Bacillus toyonensis SORGH_AS 407 Isolate Unclassified
175 3001267043 Bacillus sp. FJAT-49870 Isolate Rhizosphere
176 3001272096 Lederbergia citrisecunda FJAT-49732 Isolate Rhizosphere
177 3006969106 Bacillus sp. FJAT-50079 Isolate Rhizosphere
178 3006988479 Bacillus sp. FJAT-49711 Isolate Rhizosphere
179 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
180 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
181 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
182 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.53
Metatranscriptomes 0.44
Isolates 17.03

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.06
Nodule 1.75
Rhizoplane 10.04
Rhizosphere 69.43
Stem 0
Stem Tuber 0
Unclassified 0.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081539_10022155 3300005985 Bacteria 4213
2 SwRhRL2b_contig_1716529 2162886007 Bacteria 5732
3 JGI25159J45721_1001107 3300002987 Bacteria 11499
4 Ga0006562J51391_1007085 3300003578 Bacteria 16073
5 Ga0065714_10004506 3300005288 Bacteria 4823
6 Ga0065714_10067310 3300005288 Bacteria 5667
7 Ga0065714_10071229 3300005288 Bacteria 3632
8 Ga0065704_10072462 3300005289 Bacteria 8466
9 Ga0070677_10000080 3300005333 Bacteria 30587
10 Ga0070710_10078597 3300005437 Bacteria 1920
11 Ga0070700_100030167 3300005441 Bacteria 3238
12 Ga0070684_100000780 3300005535 Bacteria 22118
13 Ga0070672_100000025 3300005543 Bacteria 67313
14 Ga0070665_100000138 3300005548 Bacteria 136562
15 Ga0068857_100002096 3300005577 Bacteria 16204
16 Ga0068866_10006910 3300005718 Bacteria 4740
17 Ga0068863_100026262 3300005841 Bacteria 5557
18 Ga0068858_100000009 3300005842 Bacteria 237748
19 Ga0068858_100000284 3300005842 Bacteria 54715
20 Ga0099824_1000146 3300006942 Bacteria 63004
21 Ga0079104_1000126 3300006946 Bacteria 109126
22 Ga0099826_10000374 3300006948 Bacteria 20771
23 Ga0105244_10000508 3300009036 Bacteria 34770
24 Ga0105250_10001250 3300009092 Bacteria 14073
25 Ga0105243_10009674 3300009148 Bacteria 7339
26 Ga0105242_10000397 3300009176 Bacteria 34573
27 Ga0105246_10084863 3300011119 Bacteria 2267
28 Ga0157373_10000038 3300013100 Bacteria 121372
29 Ga0157370_10005833 3300013104 Bacteria 13761
30 Ga0157370_10006335 3300013104 Bacteria 13076
31 Ga0157370_10017853 3300013104 Bacteria 7150
32 Ga0157369_10002379 3300013105 Bacteria 22602
33 Ga0157375_10025347 3300013308 Bacteria 5508
34 Ga0182006_1004174 3300015261 Bacteria 7172
35 Ga0163161_10000083 3300017792 Bacteria 94571
36 Ga0213876_10004675 3300021384 Bacteria 7627
37 Ga0209130_1001603 3300025284 Bacteria 14088
38 Ga0209025_1000519 3300025294 Bacteria 73362
39 Ga0207655_1000045 3300025728 Bacteria 315397
40 Ga0207682_10000045 3300025893 Bacteria 51744
41 Ga0207642_10002571 3300025899 Bacteria 5653
42 Ga0207693_10129571 3300025915 Bacteria 1983
43 Ga0207646_10055207 3300025922 Bacteria 3552
44 Ga0207686_10000252 3300025934 Bacteria 40825
45 Ga0207709_10002134 3300025935 Bacteria 12691
46 Ga0207661_10020519 3300025944 Bacteria 4940
47 Ga0207679_10080834 3300025945 Bacteria 2483
48 Ga0207668_10017013 3300025972 Bacteria 4550
49 Ga0207703_10000018 3300026035 Bacteria 271377
50 Ga0207703_10000207 3300026035 Bacteria 68866
51 Ga0207708_10135483 3300026075 Bacteria 1928
52 Ga0207641_10008098 3300026088 Bacteria 8706
53 Ga0207674_10007140 3300026116 Bacteria 13048
54 Ga0209281_1000424 3300027111 Bacteria 63116
55 Ga0268266_10000047 3300028379 Bacteria 310996
56 Ga0307408_100000572 3300031548 Bacteria 31757
57 Ga0307408_100000822 3300031548 Bacteria 24653
58 Ga0307405_10000001 3300031731 Bacteria 1731270
59 Ga0307413_10000191 3300031824 Bacteria 17656
60 Ga0307410_10000085 3300031852 Bacteria 31342
61 Ga0307406_10000029 3300031901 Bacteria 87707
62 Ga0307406_10051272 3300031901 Bacteria 2619
63 Ga0307407_10004763 3300031903 Bacteria 5806
64 Ga0307409_100019846 3300031995 Bacteria 4564
65 Ga0307416_100026507 3300032002 Bacteria 4272
66 Ga0307416_100061405 3300032002 Bacteria 3067
67 Ga0307414_10000005 3300032004 Bacteria 452161
68 Ga0307414_10001209 3300032004 Bacteria 13311
69 Ga0307411_10000002 3300032005 Bacteria 534807
70 Ga0307510_10014167 3300033180 Bacteria 9441
71 Ga0373944_0002742 3300035089 Bacteria 4500
72 Ga0373936_0002887 3300035113 Bacteria 6415
73 Ga0373943_0001192 3300035170 Bacteria 11613
74 Ga0373943_0002076 3300035170 Bacteria 9095
75 Ga0373935_0013263 3300035692 Bacteria 4971
76 Ga0373947_0019614 3300035725 Bacteria 3899
77 Ga0373947_0046153 3300035725 Bacteria 2608
78 Ga0373925_0005621 3300037068 Bacteria 9327
79 Ga0373925_0010051 3300037068 Bacteria 6874
80 Ga0395900_0133727 3300037418 Bacteria 2541
81 Ga0436365_1577912 3300039437 Bacteria 3333
82 Ga0436365_1611971 3300039437 Bacteria 6620
83 Ga0436363_0123694 3300039450 Bacteria 1814
84 Ga0436363_1613861 3300039450 Bacteria 1524
85 Ga0439447_000057 3300041407 Bacteria 38460
86 Ga0451577_0035879 3300042876 Bacteria 4466
87 Ga0453683_0012716 3300044673 Bacteria 5511
88 Ga0453683_0021859 3300044673 Unclassified 4080
89 Ga0453683_0078475 3300044673 Bacteria 2068
90 Ga0466963_0054751 3300044694 Bacteria 2652
91 Ga0466958_0061503 3300045836 Bacteria 2288
92 Ga0466967_0065000 3300045976 Bacteria 3246
93 Ga0466967_0155392 3300045976 Bacteria 2142
94 Ga0495592_0041745 3300046454 Bacteria 3437
95 Ga0495629_0000593 3300046459 Bacteria 29449
96 Ga0495641_0001017 3300046461 Bacteria 24111
97 Ga0495641_0014016 3300046461 Bacteria 4363
98 Ga0495641_0016868 3300046461 Bacteria 3829
99 Ga0495651_0036294 3300046462 Bacteria 3837
100 Ga0495582_0000056 3300046473 Bacteria 57084
101 Ga0495639_0002894 3300046475 Bacteria 7474
102 Ga0495608_0004777 3300046511 Bacteria 9688
103 Ga0495608_0058145 3300046511 Bacteria 2550
104 Ga0495628_0113517 3300046516 Bacteria 2082
105 Ga0495630_0009353 3300046517 Bacteria 7045
106 Ga0495630_0079832 3300046517 Unclassified 2468
107 Ga0495666_0021081 3300046526 Bacteria 3226
108 Ga0495652_0047075 3300046529 Bacteria 3700
109 Ga0495652_0060952 3300046529 Bacteria 3186
110 Ga0495665_0000364 3300046531 Bacteria 22881
111 Ga0495640_0063287 3300046533 Bacteria 2506
112 Ga0495587_0053954 3300046536 Bacteria 2369
113 Ga0495667_0000047 3300046559 Bacteria 117718
114 Ga0495656_0000210 3300046615 Bacteria 20852
115 Ga0495634_0036830 3300046642 Bacteria 3344
116 Ga0495635_0014808 3300046663 Bacteria 5455
117 Ga0495635_0051672 3300046663 Bacteria 2831
118 Ga0495599_0083018 3300046678 Bacteria 2001
119 Ga0495647_0029159 3300046681 Bacteria 2039
120 Ga0495658_0023014 3300046683 Bacteria 3303
121 Ga0495613_0000401 3300046689 Bacteria 37127
122 Ga0495670_0022303 3300046691 Bacteria 3126
123 Ga0495674_0061582 3300047319 Bacteria 3270
124 Ga0495676_0086495 3300047321 Bacteria 2358
125 Ga0495680_0000447 3300047322 Bacteria 46180
126 Ga0495680_0004249 3300047322 Bacteria 13751
127 Ga0495680_0004314 3300047322 Bacteria 13633
128 Ga0495680_0010742 3300047322 Bacteria 8158
129 Ga0495684_0011366 3300047471 Bacteria 6874
130 Ga0495684_0076043 3300047471 Bacteria 2550
131 Ga0495593_0010801 3300047673 Bacteria 5263
132 Ga0495614_0000769 3300048089 Bacteria 13583
133 Ga0496100_0028085 3300048903 Bacteria 3467
134 Ga0496102_0000572 3300048905 Bacteria 39087
135 Ga0496102_0083964 3300048905 Bacteria 2939
136 Ga0496103_0000008 3300048906 Bacteria 340474
137 Ga0496104_0004295 3300048907 Bacteria 12387
138 Ga0496104_0015295 3300048907 Bacteria 6947
139 Ga0496104_0039387 3300048907 Bacteria 4426
140 Ga0496104_0080195 3300048907 Bacteria 3112
141 Ga0496104_0264521 3300048907 Bacteria 1632
142 Ga0496105_0002091 3300048908 Bacteria 14436
143 Ga0496105_0011797 3300048908 Bacteria 6919
144 Ga0496105_0021766 3300048908 Bacteria 5190
145 Ga0496105_0184178 3300048908 Bacteria 1709
146 Ga0496109_0065443 3300048912 Bacteria 3328
147 Ga0496109_0088387 3300048912 Bacteria 2864
148 Ga0496110_0045938 3300048913 Bacteria 3819
149 Ga0496111_0069001 3300048914 Bacteria 2570
150 Ga0496112_0072695 3300048915 Bacteria 3400
151 Ga0496113_0127492 3300048916 Bacteria 1994
152 Ga0496114_0000074 3300048917 Bacteria 71312
153 Ga0496114_0014099 3300048917 Bacteria 6408
154 Ga0496115_0000367 3300048918 Bacteria 37531
155 Ga0496115_0001237 3300048918 Bacteria 18328
156 Ga0496116_0000212 3300048919 Bacteria 109276
157 Ga0496119_0011579 3300048922 Bacteria 7278
158 Ga0496121_0011045 3300048924 Bacteria 10080
159 Ga0496121_0017049 3300048924 Bacteria 7450
160 Ga0496124_0110378 3300048927 Bacteria 2214
161 Ga0496125_0000062 3300048928 Bacteria 259277
162 Ga0496125_0074853 3300048928 Bacteria 2623
163 Ga0496125_0094568 3300048928 Bacteria 2226
164 Ga0496126_0005976 3300048929 Bacteria 13686
165 Ga0501042_0069060 3300049578 Bacteria 2527
166 Ga0501042_0128876 3300049578 Bacteria 1823
167 Ga0501047_0054347 3300049581 Bacteria 3873
168 Ga0501075_0105481 3300049591 Bacteria 2142
169 Ga0501223_001183 3300049663 Bacteria 6152
170 Ga0501238_000153 3300049671 Bacteria 10601
171 Ga0501249_000005 3300049679 Bacteria 225972
172 Ga0501079_0026297 3300049741 Bacteria 4462
173 Ga0501241_008084 3300049758 Bacteria 1925
174 Ga0501266_000021 3300049763 Bacteria 96901
175 Ga0501269_002600 3300049766 Bacteria 2210
176 Ga0501280_000448 3300049776 Bacteria 9855
177 Ga0495601_0050738 3300053077 Bacteria 2617
178 Ga0495601_0144682 3300053077 Bacteria 1551
179 Ga0495612_0010020 3300053078 Bacteria 3836
180 Ga0495612_0042144 3300053078 Bacteria 1863
181 Ga0495655_0000001 3300053083 Bacteria 419518
182 Ga0495595_0019426 3300053084 Bacteria 2947
183 Ga0495619_0000008 3300053085 Bacteria 305999
184 Ga0495619_0000860 3300053085 Bacteria 19904
185 Ga0500641_0000041 3300053096 Bacteria 67704
186 Ga0500641_0000691 3300053096 Bacteria 12203
187 Ga0500628_000073 3300053129 Bacteria 26096
188 Ga0500658_0000311 3300053134 Bacteria 21774
189 Ga0501082_0024913 3300060353 Bacteria 5155
190 Ga0530510_0191568 3300061734 Bacteria 1518
191 2513235849 2513020052 Bacteria 5120511
192 2520881259 2519899754 Bacteria 5336938
193 2644010824 2643221600 Bacteria 5530138
194 2644373696 2643221667 Bacteria 5627472
195 2644643358 2643221716 Bacteria 4986332
196 2644684104 2643221725 Bacteria 5087956
197 2705995825 2703719227 Bacteria 5631989
198 2738734832 2738541279 Bacteria 6149495
199 2738767591 2738541285 Bacteria 6150075
200 2739154918 2738541358 Bacteria 5932299
201 2739207710 2738543006 Bacteria 5904091
202 2739216414 2738543007 Bacteria 6149845
203 2739999602 2739367857 Bacteria 5433684
204 2740004418 2739367858 Bacteria 5432813
205 2802652000 2802428842 Bacteria 4926114
206 2817414875 2816332280 Bacteria 5109718
207 2857615152 2857613821 Bacteria 4917088
208 2857621054 2857618242 Bacteria 5635925
209 2881361995 2881359912 Bacteria 4935907
210 2881647701 2881644220 Bacteria 5302661
211 2903895959 2903895155 Bacteria 5258610
212 2904422011 2904419702 Bacteria 5166287
213 2904559644 2904555929 Bacteria 5218588
214 2916974664 2916971899 Bacteria 4250608
215 2919196262 2919191525 Bacteria 5765973
216 2919684938 2919683626 Bacteria 5534354
217 2929152018 2929150217 Bacteria 5462483
218 2958460315 2958458903 Bacteria 5301041
219 2965765158 2965761152 Bacteria 5806513
220 2977268750 2977268062 Bacteria 5243061
221 2979087553 2979083700 Bacteria 5894929
222 3001267518 3001267043 Bacteria 4823521
223 3001272990 3001272096 Bacteria 4729684
224 3006970737 3006969106 Bacteria 4739423
225 3006989716 3006988479 Bacteria 4767936
226 8054312230 8054307821 Bacteria 5212224
227 8055419331 8055419101 Bacteria 5289643
228 8055592690 8055592153 Bacteria 5961247
229 8056442699 8056440228 Bacteria 4946504
230 Ga0081539_10022155
231 SwRhRL2b_contig_1716529
232 JGI25159J45721_1001107
233 Ga0006562J51391_1007085
234 Ga0065714_10004506
235 Ga0065714_10067310
236 Ga0065714_10071229
237 Ga0065704_10072462
238 Ga0070677_10000080
239 Ga0070710_10078597
240 Ga0070700_100030167
241 Ga0070684_100000780
242 Ga0070672_100000025
243 Ga0070665_100000138
244 Ga0068857_100002096
245 Ga0068866_10006910
246 Ga0068863_100026262
247 Ga0068858_100000009
248 Ga0068858_100000284
249 Ga0099824_1000146
250 Ga0079104_1000126
251 Ga0099826_10000374
252 Ga0105244_10000508
253 Ga0105250_10001250
254 Ga0105243_10009674
255 Ga0105242_10000397
256 Ga0105246_10084863
257 Ga0157373_10000038
258 Ga0157370_10005833
259 Ga0157370_10006335
260 Ga0157370_10017853
261 Ga0157369_10002379
262 Ga0157375_10025347
263 Ga0182006_1004174
264 Ga0163161_10000083
265 Ga0213876_10004675
266 Ga0209130_1001603
267 Ga0209025_1000519
268 Ga0207655_1000045
269 Ga0207682_10000045
270 Ga0207642_10002571
271 Ga0207693_10129571
272 Ga0207646_10055207
273 Ga0207686_10000252
274 Ga0207709_10002134
275 Ga0207661_10020519
276 Ga0207679_10080834
277 Ga0207668_10017013
278 Ga0207703_10000018
279 Ga0207703_10000207
280 Ga0207708_10135483
281 Ga0207641_10008098
282 Ga0207674_10007140
283 Ga0209281_1000424
284 Ga0268266_10000047
285 Ga0307408_100000572
286 Ga0307408_100000822
287 Ga0307405_10000001
288 Ga0307413_10000191
289 Ga0307410_10000085
290 Ga0307406_10000029
291 Ga0307406_10051272
292 Ga0307407_10004763
293 Ga0307409_100019846
294 Ga0307416_100026507
295 Ga0307416_100061405
296 Ga0307414_10000005
297 Ga0307414_10001209
298 Ga0307411_10000002
299 Ga0307510_10014167
300 Ga0373944_0002742
301 Ga0373936_0002887
302 Ga0373943_0001192
303 Ga0373943_0002076
304 Ga0373935_0013263
305 Ga0373947_0019614
306 Ga0373947_0046153
307 Ga0373925_0005621
308 Ga0373925_0010051
309 Ga0395900_0133727
310 Ga0436365_1577912
311 Ga0436365_1611971
312 Ga0436363_0123694
313 Ga0436363_1613861
314 Ga0439447_000057
315 Ga0451577_0035879
316 Ga0453683_0012716
317 Ga0453683_0021859
318 Ga0453683_0078475
319 Ga0466963_0054751
320 Ga0466958_0061503
321 Ga0466967_0065000
322 Ga0466967_0155392
323 Ga0495592_0041745
324 Ga0495629_0000593
325 Ga0495641_0001017
326 Ga0495641_0014016
327 Ga0495641_0016868
328 Ga0495651_0036294
329 Ga0495582_0000056
330 Ga0495639_0002894
331 Ga0495608_0004777
332 Ga0495608_0058145
333 Ga0495628_0113517
334 Ga0495630_0009353
335 Ga0495630_0079832
336 Ga0495666_0021081
337 Ga0495652_0047075
338 Ga0495652_0060952
339 Ga0495665_0000364
340 Ga0495640_0063287
341 Ga0495587_0053954
342 Ga0495667_0000047
343 Ga0495656_0000210
344 Ga0495634_0036830
345 Ga0495635_0014808
346 Ga0495635_0051672
347 Ga0495599_0083018
348 Ga0495647_0029159
349 Ga0495658_0023014
350 Ga0495613_0000401
351 Ga0495670_0022303
352 Ga0495674_0061582
353 Ga0495676_0086495
354 Ga0495680_0000447
355 Ga0495680_0004249
356 Ga0495680_0004314
357 Ga0495680_0010742
358 Ga0495684_0011366
359 Ga0495684_0076043
360 Ga0495593_0010801
361 Ga0495614_0000769
362 Ga0496100_0028085
363 Ga0496102_0000572
364 Ga0496102_0083964
365 Ga0496103_0000008
366 Ga0496104_0004295
367 Ga0496104_0015295
368 Ga0496104_0039387
369 Ga0496104_0080195
370 Ga0496104_0264521
371 Ga0496105_0002091
372 Ga0496105_0011797
373 Ga0496105_0021766
374 Ga0496105_0184178
375 Ga0496109_0065443
376 Ga0496109_0088387
377 Ga0496110_0045938
378 Ga0496111_0069001
379 Ga0496112_0072695
380 Ga0496113_0127492
381 Ga0496114_0000074
382 Ga0496114_0014099
383 Ga0496115_0000367
384 Ga0496115_0001237
385 Ga0496116_0000212
386 Ga0496119_0011579
387 Ga0496121_0011045
388 Ga0496121_0017049
389 Ga0496124_0110378
390 Ga0496125_0000062
391 Ga0496125_0074853
392 Ga0496125_0094568
393 Ga0496126_0005976
394 Ga0501042_0069060
395 Ga0501042_0128876
396 Ga0501047_0054347
397 Ga0501075_0105481
398 Ga0501223_001183
399 Ga0501238_000153
400 Ga0501249_000005
401 Ga0501079_0026297
402 Ga0501241_008084
403 Ga0501266_000021
404 Ga0501269_002600
405 Ga0501280_000448
406 Ga0495601_0050738
407 Ga0495601_0144682
408 Ga0495612_0010020
409 Ga0495612_0042144
410 Ga0495655_0000001
411 Ga0495595_0019426
412 Ga0495619_0000008
413 Ga0495619_0000860
414 Ga0500641_0000041
415 Ga0500641_0000691
416 Ga0500628_000073
417 Ga0500658_0000311
418 Ga0501082_0024913
419 Ga0530510_0191568
420 2513235849
421 2520881259
422 2644010824
423 2644373696
424 2644643358
425 2644684104
426 2705995825
427 2738734832
428 2738767591
429 2739154918
430 2739207710
431 2739216414
432 2739999602
433 2740004418
434 2802652000
435 2817414875
436 2857615152
437 2857621054
438 2881361995
439 2881647701
440 2903895959
441 2904422011
442 2904559644
443 2916974664
444 2919196262
445 2919684938
446 2929152018
447 2958460315
448 2965765158
449 2977268750
450 2979087553
451 3001267518
452 3001272990
453 3006970737
454 3006989716
455 8054312230
456 8055419331
457 8055592690
458 8056442699

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02875

Mur_ligase_C

Mur ligase, glutamate ligase domain

361

494

0.94

PF08245

Mur_ligase_M

Mur ligase middle domain

111

337

0.89

PF01225

Mur_ligase

Mur ligase family, catalytic domain

35

99

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
7waf-assembly1.cif.gz_B trichodesmium erythraeum cyanophycin synthetase 1 (tecpha1) with atpgammas and 4x(beta-asp-arg) 0.8156 73 413
4c12-assembly1.cif.gz_A x-ray crystal structure of staphylococcus aureus mure with udp-murnac- ala-glu-lys and adp 0.8037 4 443
7lgj-assembly1.cif.gz_A cyanophycin synthetase 1 from synechocystis sp. utex2470 with adpcp and 8x(asp-arg)-nh2 0.7963 73 445
7lg5-assembly1.cif.gz_A synechocystis sp. utex2470 cyanophycin synthetase 1 with atp 0.7939 73 445
4c12-assembly1.cif.gz_A x-ray crystal structure of staphylococcus aureus mure with udp-murnac- ala-glu-lys and adp 0.7914 4 443
ID Description Score Start End Superfamily
3zl8A01 Alpha Beta;3-Layer(aba) Sandwich;Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1;MurE/MurF, N-terminal domain 0.9647 26 69 3.40.1390.10
4c13A02 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.958 73 288 3.40.1190.10
2wtzD03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9498 300 439 3.90.190.20
1e8cB03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9483 290 434 3.90.190.20
4bubB03 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9473 298 443 3.90.190.20
ID Description Score Start End GO Terms
AF-A0A3B9CLL8-F1-model_v4 deleted 0.991 73 352
AF-K1UK52-F1-model_v4 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9875 195 405 GO:0005524
GO:0009058
GO:0016881
AF-A0A353UFM6-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 0.9818 2 69 GO:0009058
GO:0016881
AF-A0A3B9CLL8-F1-model_v4 deleted 0.9805 73 352
AF-A0A699RD99-F1-model_v4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE homolog, chloroplastic 0.9799 302 391 GO:0009058
GO:0016881

Map