F342268

General Info

Members Datasets Scaffolds Average Seq Length
229 95 458 563

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0032750|Ga0453684_0032750_4121_5941
Length 606
Sequence MIICILSGQVIPDLAKMRAVYFLKDTMQTTMVEKVQAVDQRTSVEIHLPDGRVYSGTRGLPVEAFLKALPEWQDPPVVGAVVNGELRELTYPISMDARVQPVTMADADGARMYRRSLIFLLETAFEDLFSPAELTVDHSVSSGGYFCQISGRAALNEADLQKLVRRMHELVAADLPLERNQVPLAEAVAYFEEKRQFDKVHLLKYRQKDHLVLYTLDGHRDYHHGYMVPSTGYLQVFGLRLENGDGFVLQYPRRHAPKELLPMPDYPQLLNNFRQYGNWLTRLGIENAGALDDAISSGRAREIILVSEALHERRISEIATQFVERSPYPRIILIAGPSSSGKTTFSKRLAVQLLALGVTPFALEMDNYFVDRNLTPRDEKGDYDFESLAALDCVRLADDLRRLLAGEEVQLPRYDFRTGCSEKGELVRLSKDQVVILEGIHGLNPNLLPDFPTAQTFRIYVSCLTQLNLDRYNRISTTDSRLIRRIVRDARERGYPAHITIQRWESVRRGEKRHIFPYQENADVMFNSALVYELAALKPLIEPLLRQVPFGTEEYIEAKRLLTFLEWFLPVDADLIPDNSILREFLGGSILKEFKLWQISLDHLAK

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
17 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
20 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
21 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
25 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
33 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
34 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
35 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
36 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
43 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
45 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
46 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
47 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
48 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
49 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
50 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
51 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
52 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
53 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
54 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
55 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
56 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
57 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
58 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
59 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
60 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
61 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
62 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
63 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
64 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
65 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
68 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
69 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
70 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
71 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
72 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
73 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
74 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
75 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
76 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
77 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
78 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
79 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
80 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
81 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
82 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
83 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
84 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
85 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
86 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
87 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
88 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
89 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
90 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
91 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
92 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
93 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
94 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
95 8007375930 Clostridium sp. YIM B02565 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.56
Metatranscriptomes 0
Isolates 0.44

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 1.31
Rhizoplane 4.37
Rhizosphere 89.08
Stem 0
Stem Tuber 0
Unclassified 13.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0032750 3300044712 Bacteria 7263
2 SwRhRL2b_contig_3613834 2162886007 Bacteria 8534
3 Ga0065704_10070672 3300005289 Bacteria 17902
4 Ga0065712_10074671 3300005290 Unclassified 4037
5 Ga0065715_10002818 3300005293 Bacteria 5003
6 Ga0065707_10083099 3300005295 Bacteria 10504
7 Ga0065707_10083889 3300005295 Bacteria 8036
8 Ga0065707_10093963 3300005295 Bacteria 3557
9 Ga0065707_10096337 3300005295 Bacteria 3279
10 Ga0065707_10115946 3300005295 Bacteria 2252
11 Ga0070670_100009545 3300005331 Bacteria 8280
12 Ga0070689_100028603 3300005340 Unclassified 4214
13 Ga0070705_100038465 3300005440 Bacteria 2707
14 Ga0070706_100058012 3300005467 Unclassified 3573
15 Ga0070706_100066698 3300005467 Bacteria 3329
16 Ga0070707_100116867 3300005468 Bacteria 2589
17 Ga0070698_100024202 3300005471 Bacteria 6336
18 Ga0070698_100031442 3300005471 Bacteria 5503
19 Ga0070699_100006932 3300005518 Bacteria 9852
20 Ga0070704_100009604 3300005549 Bacteria 5857
21 Ga0068859_100094587 3300005617 Bacteria 3040
22 Ga0068864_100063529 3300005618 Bacteria 3199
23 Ga0068862_100070527 3300005844 Bacteria 3017
24 Ga0081539_10003318 3300005985 Bacteria 20084
25 Ga0075427_10003428 3300006194 Unclassified 2184
26 Ga0097621_100049548 3300006237 Bacteria 3412
27 Ga0068871_100030186 3300006358 Bacteria 4266
28 Ga0075428_100115488 3300006844 Bacteria 2924
29 Ga0075431_100034223 3300006847 Bacteria 5234
30 Ga0075429_100006544 3300006880 Bacteria 10085
31 Ga0075429_100008358 3300006880 Bacteria 9008
32 Ga0097620_100094584 3300006931 Bacteria 3040
33 Ga0079104_1000517 3300006946 Bacteria 41298
34 Ga0111539_10010841 3300009094 Bacteria 11473
35 Ga0114129_10000734 3300009147 Bacteria 41734
36 Ga0114129_10064535 3300009147 Bacteria 5111
37 Ga0105243_10008394 3300009148 Bacteria 7927
38 Ga0105243_10013529 3300009148 Bacteria 6172
39 Ga0105243_10101389 3300009148 Unclassified 2390
40 Ga0105248_10041350 3300009177 Bacteria 5168
41 Ga0105249_10035688 3300009553 Unclassified 4509
42 Ga0105249_10057393 3300009553 Bacteria 3566
43 Ga0105246_10034549 3300011119 Bacteria 3371
44 Ga0163162_10029795 3300013306 Bacteria 5403
45 Ga0157375_10071696 3300013308 Unclassified 3479
46 Ga0163163_10066903 3300014325 Bacteria 3570
47 Ga0207684_10158841 3300025910 Unclassified 1946
48 Ga0207650_10019565 3300025925 Bacteria 4760
49 Ga0207706_10038963 3300025933 Bacteria 4215
50 Ga0207669_10000803 3300025937 Bacteria 13453
51 Ga0207712_10063675 3300025961 Bacteria 2626
52 Ga0207676_10052172 3300026095 Bacteria 3196
53 Ga0209281_1000280 3300027111 Bacteria 96704
54 Ga0209281_1001290 3300027111 Bacteria 16077
55 Ga0268265_10066048 3300028380 Unclassified 2795
56 Ga0268265_10116663 3300028380 Bacteria 2191
57 Ga0265334_10010038 3300028573 Bacteria 4001
58 Ga0265323_10000161 3300028653 Bacteria 40039
59 Ga0265323_10001822 3300028653 Bacteria 10114
60 Ga0265323_10008913 3300028653 Bacteria 4121
61 Ga0265323_10012280 3300028653 Bacteria 3438
62 Ga0265322_10000465 3300028654 Bacteria 16233
63 Ga0265322_10000487 3300028654 Bacteria 15580
64 Ga0265338_10022468 3300028800 Bacteria 6530
65 Ga0265330_10010772 3300031235 Bacteria 4302
66 Ga0265330_10017639 3300031235 Bacteria 3285
67 Ga0265330_10028908 3300031235 Bacteria 2495
68 Ga0265329_10024145 3300031242 Bacteria 2019
69 Ga0265327_10000091 3300031251 Bacteria 196369
70 Ga0265327_10016989 3300031251 Bacteria 4589
71 Ga0265327_10020139 3300031251 Bacteria 4076
72 Ga0265316_10002299 3300031344 Bacteria 19965
73 Ga0265316_10006444 3300031344 Bacteria 11213
74 Ga0265316_10055738 3300031344 Bacteria 3090
75 Ga0265316_10068671 3300031344 Bacteria 2737
76 Ga0265316_10114063 3300031344 Bacteria 2044
77 Ga0316575_10012787 3300031665 Bacteria 3128
78 Ga0316575_10019775 3300031665 Bacteria 2578
79 Ga0316579_10000230 3300031691 Bacteria 16993
80 Ga0316579_10012567 3300031691 Bacteria 3626
81 Ga0316579_10015111 3300031691 Bacteria 3347
82 Ga0316579_10019387 3300031691 Unclassified 3005
83 Ga0265342_10020155 3300031712 Bacteria 4284
84 Ga0316576_10000102 3300031727 Bacteria 31248
85 Ga0316576_10003676 3300031727 Bacteria 9051
86 Ga0316576_10004520 3300031727 Bacteria 8359
87 Ga0316576_10102382 3300031727 Unclassified 2141
88 Ga0316578_10000679 3300031728 Bacteria 12175
89 Ga0316578_10004540 3300031728 Bacteria 6574
90 Ga0316578_10009795 3300031728 Bacteria 4944
91 Ga0316578_10077431 3300031728 Bacteria 1975
92 Ga0316577_10011344 3300031733 Bacteria 4825
93 Ga0316577_10011716 3300031733 Bacteria 4757
94 Ga0316577_10014649 3300031733 Bacteria 4306
95 Ga0307409_100096741 3300031995 Unclassified 2437
96 Ga0316583_10001276 3300032133 Bacteria 8312
97 Ga0316585_10001400 3300032137 Bacteria 6357
98 Ga0316585_10007900 3300032137 Bacteria 3076
99 Ga0316580_10000099 3300032139 Bacteria 15532
100 Ga0316580_10002479 3300032139 Bacteria 5083
101 Ga0316580_10010216 3300032139 Unclassified 2831
102 Ga0316574_0000374 3300035398 Bacteria 17395
103 Ga0316574_0002616 3300035398 Bacteria 9077
104 Ga0316574_0010640 3300035398 Bacteria 5204
105 Ga0373937_0274995 3300036401 Bacteria 1590
106 Ga0316582_0000795 3300036647 Bacteria 12774
107 Ga0316582_0012503 3300036647 Bacteria 4741
108 Ga0316582_0015368 3300036647 Bacteria 4375
109 Ga0316582_0045022 3300036647 Unclassified 2777
110 Ga0316582_0089994 3300036647 Bacteria 2019
111 Ga0316582_0141853 3300036647 Unclassified 1620
112 Ga0316584_0002793 3300036712 Bacteria 11179
113 Ga0316584_0004177 3300036712 Bacteria 9537
114 Ga0316584_0004186 3300036712 Bacteria 9526
115 Ga0316584_0005404 3300036712 Bacteria 8571
116 Ga0316584_0018965 3300036712 Bacteria 4970
117 Ga0316584_0020216 3300036712 Bacteria 4824
118 Ga0316584_0024882 3300036712 Bacteria 4386
119 Ga0316584_0033747 3300036712 Bacteria 3792
120 Ga0316584_0040712 3300036712 Bacteria 3462
121 Ga0316584_0054866 3300036712 Bacteria 2984
122 Ga0316584_0067444 3300036712 Bacteria 2682
123 Ga0316584_0076376 3300036712 Unclassified 2510
124 Ga0395901_0206953 3300038443 Bacteria 2055
125 Ga0400484_45198 3300038725 Bacteria 4401
126 Ga0400488_30413 3300038741 Unclassified 3025
127 Ga0400483_123761 3300039062 Bacteria 63490
128 Ga0400483_187436 3300039062 Bacteria 4245
129 Ga0400483_228756 3300039062 Bacteria 22799
130 Ga0400489_08863 3300039093 Archaea 10683
131 Ga0400489_11313 3300039093 Unclassified 4827
132 Ga0451855_0310664 3300041511 Bacteria 1954
133 Ga0451855_0523799 3300041511 Bacteria 3897
134 Ga0451855_1875730 3300041511 Bacteria 3077
135 Ga0450923_007290 3300042125 Unclassified 1865
136 Ga0451577_0000043 3300042876 Bacteria 329533
137 Ga0451577_0005038 3300042876 Bacteria 13646
138 Ga0451577_0005181 3300042876 Bacteria 13411
139 Ga0451577_0032626 3300042876 Bacteria 4691
140 Ga0451577_0043369 3300042876 Unclassified 4029
141 Ga0451577_0073144 3300042876 Bacteria 3059
142 Ga0451577_0123399 3300042876 Bacteria 2320
143 Ga0451577_0148895 3300042876 Bacteria 2105
144 Ga0451577_0162197 3300042876 Bacteria 2013
145 Ga0453683_0000016 3300044673 Bacteria 310845
146 Ga0453683_0000133 3300044673 Bacteria 108537
147 Ga0453683_0001308 3300044673 Bacteria 21964
148 Ga0453683_0001400 3300044673 Bacteria 20958
149 Ga0453683_0007124 3300044673 Bacteria 7618
150 Ga0453683_0017531 3300044673 Bacteria 4611
151 Ga0453683_0042656 3300044673 Bacteria 2848
152 Ga0453684_0000003 3300044712 Bacteria 1481694
153 Ga0453684_0000021 3300044712 Bacteria 873490
154 Ga0453684_0000128 3300044712 Bacteria 335864
155 Ga0453684_0000133 3300044712 Bacteria 329529
156 Ga0453684_0000840 3300044712 Bacteria 103623
157 Ga0453684_0002547 3300044712 Bacteria 43836
158 Ga0453684_0002770 3300044712 Bacteria 41493
159 Ga0453684_0003439 3300044712 Bacteria 35680
160 Ga0453684_0004299 3300044712 Bacteria 30359
161 Ga0453684_0004331 3300044712 Bacteria 30193
162 Ga0453684_0005366 3300044712 Bacteria 25487
163 Ga0453684_0012497 3300044712 Bacteria 13985
164 Ga0453684_0013246 3300044712 Bacteria 13434
165 Ga0453684_0013679 3300044712 Bacteria 13147
166 Ga0453684_0014380 3300044712 Bacteria 12668
167 Ga0453684_0016033 3300044712 Bacteria 11765
168 Ga0453684_0016171 3300044712 Bacteria 11698
169 Ga0453684_0021552 3300044712 Bacteria 9620
170 Ga0453684_0023238 3300044712 Bacteria 9146
171 Ga0453684_0027462 3300044712 Bacteria 8163
172 Ga0453684_0028587 3300044712 Bacteria 7949
173 Ga0453684_0029996 3300044712 Bacteria 7699
174 Ga0453684_0031303 3300044712 Bacteria 7483
175 Ga0453684_0043382 3300044712 Bacteria 6045
176 Ga0453684_0045058 3300044712 Bacteria 5889
177 Ga0453684_0053649 3300044712 Bacteria 5260
178 Ga0453684_0058457 3300044712 Unclassified 4981
179 Ga0453684_0058669 3300044712 Unclassified 4970
180 Ga0453684_0058978 3300044712 Unclassified 4954
181 Ga0453684_0059398 3300044712 Unclassified 4930
182 Ga0453684_0066381 3300044712 Bacteria 4595
183 Ga0453684_0077162 3300044712 Bacteria 4179
184 Ga0453684_0107664 3300044712 Unclassified 3393
185 Ga0453684_0120876 3300044712 Bacteria 3162
186 Ga0453684_0187100 3300044712 Unclassified 2425
187 Ga0453684_0196556 3300044712 Unclassified 2355
188 Ga0453684_0242409 3300044712 Bacteria 2074
189 Ga0453684_0373119 3300044712 Unclassified 1603
190 Ga0451576_0000011 3300045051 Bacteria 676436
191 Ga0451576_0000046 3300045051 Bacteria 334064
192 Ga0451576_0000097 3300045051 Bacteria 220569
193 Ga0451576_0000109 3300045051 Bacteria 210549
194 Ga0451576_0008214 3300045051 Bacteria 12284
195 Ga0451576_0012040 3300045051 Bacteria 9765
196 Ga0451576_0012106 3300045051 Bacteria 9730
197 Ga0451576_0027559 3300045051 Bacteria 6100
198 Ga0451576_0035094 3300045051 Bacteria 5323
199 Ga0451576_0144235 3300045051 Bacteria 2483
200 Ga0451576_0366740 3300045051 Unclassified 1508
201 Ga0495654_0027371 3300046530 Bacteria 2924
202 Ga0495672_0003140 3300047320 Bacteria 14379
203 Ga0495672_0027540 3300047320 Bacteria 3610
204 Ga0496104_0008786 3300048907 Bacteria 8981
205 Ga0496104_0035351 3300048907 Bacteria 4665
206 Ga0496108_0113463 3300048911 Bacteria 2319
207 Ga0496109_0133730 3300048912 Bacteria 2316
208 Ga0496110_0056346 3300048913 Bacteria 3459
209 Ga0496110_0079183 3300048913 Unclassified 2925
210 Ga0496112_0004640 3300048915 Bacteria 11687
211 Ga0496114_0009141 3300048917 Bacteria 7855
212 Ga0496114_0031733 3300048917 Bacteria 4346
213 Ga0496115_0009976 3300048918 Bacteria 7076
214 Ga0496126_0002999 3300048929 Bacteria 21924
215 Ga0501076_0033719 3300049592 Bacteria 3998
216 Ga0501081_0031256 3300049743 Bacteria 3608
217 Ga0501083_0001784 3300049744 Bacteria 14705
218 nmdc:mga05p37_105823_c1 3300050507 Bacteria 3461
219 nmdc:mga05p37_11100_c1 3300050507 Bacteria 10704
220 nmdc:mga05p37_115437_c1 3300050507 Bacteria 3301
221 nmdc:mga05p37_2019_c1 3300050507 Bacteria 23678
222 nmdc:mga05p37_65790_c1 3300050507 Unclassified 4460
223 nmdc:mga09592_493_c1 3300050508 Bacteria 29628
224 nmdc:mga0a205_210005_c1 3300050515 Bacteria 1835
225 nmdc:mga0a205_9005_c1 3300050515 Bacteria 9098
226 Ga0495601_0011566 3300053077 Bacteria 5287
227 Ga0495619_0113946 3300053085 Bacteria 1849
228 Ga0501084_0052272 3300054114 Bacteria 3419
229 8007379726 8007375930 Bacteria 4080554
230 Ga0453684_0032750
231 SwRhRL2b_contig_3613834
232 Ga0065704_10070672
233 Ga0065712_10074671
234 Ga0065715_10002818
235 Ga0065707_10083099
236 Ga0065707_10083889
237 Ga0065707_10093963
238 Ga0065707_10096337
239 Ga0065707_10115946
240 Ga0070670_100009545
241 Ga0070689_100028603
242 Ga0070705_100038465
243 Ga0070706_100058012
244 Ga0070706_100066698
245 Ga0070707_100116867
246 Ga0070698_100024202
247 Ga0070698_100031442
248 Ga0070699_100006932
249 Ga0070704_100009604
250 Ga0068859_100094587
251 Ga0068864_100063529
252 Ga0068862_100070527
253 Ga0081539_10003318
254 Ga0075427_10003428
255 Ga0097621_100049548
256 Ga0068871_100030186
257 Ga0075428_100115488
258 Ga0075431_100034223
259 Ga0075429_100006544
260 Ga0075429_100008358
261 Ga0097620_100094584
262 Ga0079104_1000517
263 Ga0111539_10010841
264 Ga0114129_10000734
265 Ga0114129_10064535
266 Ga0105243_10008394
267 Ga0105243_10013529
268 Ga0105243_10101389
269 Ga0105248_10041350
270 Ga0105249_10035688
271 Ga0105249_10057393
272 Ga0105246_10034549
273 Ga0163162_10029795
274 Ga0157375_10071696
275 Ga0163163_10066903
276 Ga0207684_10158841
277 Ga0207650_10019565
278 Ga0207706_10038963
279 Ga0207669_10000803
280 Ga0207712_10063675
281 Ga0207676_10052172
282 Ga0209281_1000280
283 Ga0209281_1001290
284 Ga0268265_10066048
285 Ga0268265_10116663
286 Ga0265334_10010038
287 Ga0265323_10000161
288 Ga0265323_10001822
289 Ga0265323_10008913
290 Ga0265323_10012280
291 Ga0265322_10000465
292 Ga0265322_10000487
293 Ga0265338_10022468
294 Ga0265330_10010772
295 Ga0265330_10017639
296 Ga0265330_10028908
297 Ga0265329_10024145
298 Ga0265327_10000091
299 Ga0265327_10016989
300 Ga0265327_10020139
301 Ga0265316_10002299
302 Ga0265316_10006444
303 Ga0265316_10055738
304 Ga0265316_10068671
305 Ga0265316_10114063
306 Ga0316575_10012787
307 Ga0316575_10019775
308 Ga0316579_10000230
309 Ga0316579_10012567
310 Ga0316579_10015111
311 Ga0316579_10019387
312 Ga0265342_10020155
313 Ga0316576_10000102
314 Ga0316576_10003676
315 Ga0316576_10004520
316 Ga0316576_10102382
317 Ga0316578_10000679
318 Ga0316578_10004540
319 Ga0316578_10009795
320 Ga0316578_10077431
321 Ga0316577_10011344
322 Ga0316577_10011716
323 Ga0316577_10014649
324 Ga0307409_100096741
325 Ga0316583_10001276
326 Ga0316585_10001400
327 Ga0316585_10007900
328 Ga0316580_10000099
329 Ga0316580_10002479
330 Ga0316580_10010216
331 Ga0316574_0000374
332 Ga0316574_0002616
333 Ga0316574_0010640
334 Ga0373937_0274995
335 Ga0316582_0000795
336 Ga0316582_0012503
337 Ga0316582_0015368
338 Ga0316582_0045022
339 Ga0316582_0089994
340 Ga0316582_0141853
341 Ga0316584_0002793
342 Ga0316584_0004177
343 Ga0316584_0004186
344 Ga0316584_0005404
345 Ga0316584_0018965
346 Ga0316584_0020216
347 Ga0316584_0024882
348 Ga0316584_0033747
349 Ga0316584_0040712
350 Ga0316584_0054866
351 Ga0316584_0067444
352 Ga0316584_0076376
353 Ga0395901_0206953
354 Ga0400484_45198
355 Ga0400488_30413
356 Ga0400483_123761
357 Ga0400483_187436
358 Ga0400483_228756
359 Ga0400489_08863
360 Ga0400489_11313
361 Ga0451855_0310664
362 Ga0451855_0523799
363 Ga0451855_1875730
364 Ga0450923_007290
365 Ga0451577_0000043
366 Ga0451577_0005038
367 Ga0451577_0005181
368 Ga0451577_0032626
369 Ga0451577_0043369
370 Ga0451577_0073144
371 Ga0451577_0123399
372 Ga0451577_0148895
373 Ga0451577_0162197
374 Ga0453683_0000016
375 Ga0453683_0000133
376 Ga0453683_0001308
377 Ga0453683_0001400
378 Ga0453683_0007124
379 Ga0453683_0017531
380 Ga0453683_0042656
381 Ga0453684_0000003
382 Ga0453684_0000021
383 Ga0453684_0000128
384 Ga0453684_0000133
385 Ga0453684_0000840
386 Ga0453684_0002547
387 Ga0453684_0002770
388 Ga0453684_0003439
389 Ga0453684_0004299
390 Ga0453684_0004331
391 Ga0453684_0005366
392 Ga0453684_0012497
393 Ga0453684_0013246
394 Ga0453684_0013679
395 Ga0453684_0014380
396 Ga0453684_0016033
397 Ga0453684_0016171
398 Ga0453684_0021552
399 Ga0453684_0023238
400 Ga0453684_0027462
401 Ga0453684_0028587
402 Ga0453684_0029996
403 Ga0453684_0031303
404 Ga0453684_0043382
405 Ga0453684_0045058
406 Ga0453684_0053649
407 Ga0453684_0058457
408 Ga0453684_0058669
409 Ga0453684_0058978
410 Ga0453684_0059398
411 Ga0453684_0066381
412 Ga0453684_0077162
413 Ga0453684_0107664
414 Ga0453684_0120876
415 Ga0453684_0187100
416 Ga0453684_0196556
417 Ga0453684_0242409
418 Ga0453684_0373119
419 Ga0451576_0000011
420 Ga0451576_0000046
421 Ga0451576_0000097
422 Ga0451576_0000109
423 Ga0451576_0008214
424 Ga0451576_0012040
425 Ga0451576_0012106
426 Ga0451576_0027559
427 Ga0451576_0035094
428 Ga0451576_0144235
429 Ga0451576_0366740
430 Ga0495654_0027371
431 Ga0495672_0003140
432 Ga0495672_0027540
433 Ga0496104_0008786
434 Ga0496104_0035351
435 Ga0496108_0113463
436 Ga0496109_0133730
437 Ga0496110_0056346
438 Ga0496110_0079183
439 Ga0496112_0004640
440 Ga0496114_0009141
441 Ga0496114_0031733
442 Ga0496115_0009976
443 Ga0496126_0002999
444 Ga0501076_0033719
445 Ga0501081_0031256
446 Ga0501083_0001784
447 nmdc:mga05p37_105823_c1
448 nmdc:mga05p37_11100_c1
449 nmdc:mga05p37_115437_c1
450 nmdc:mga05p37_2019_c1
451 nmdc:mga05p37_65790_c1
452 nmdc:mga09592_493_c1
453 nmdc:mga0a205_210005_c1
454 nmdc:mga0a205_9005_c1
455 Ga0495601_0011566
456 Ga0495619_0113946
457 Ga0501084_0052272
458 8007379726

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00485

PRK

Phosphoribulokinase / Uridine kinase family

331

535

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
5l3p-assembly1.cif.gz_z cryo-em structure of stringent response factor rela bound to ermcl-stalled ribosome complex 0.8325 11 71
2ql6-assembly13.cif.gz_M human nicotinamide riboside kinase (nrk1) 0.8266 298 428
2kmm-assembly1.cif.gz_A solution nmr structure of the tgs domain of pg1808 from porphyromonas gingivalis. northeast structural genomics consortium target pgr122a (418-481) 0.814 13 75
5iqr-assembly1.cif.gz_8 error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.7826 13 75
6gve-assembly1.cif.gz_J gapdh-cp12-prk complex 0.7612 298 492
ID Description Score Start End Superfamily
af_Q8GZ45_41_103_3.10.20.30 Alpha Beta;Roll;Ubiquitin-like (UB roll);Beta-grasp domain 0.8804 13 70 3.10.20.30
1nyrA01 Alpha Beta;Roll;Ubiquitin-like (UB roll);Beta-grasp domain 0.8664 14 71 3.10.20.30
af_Q54R62_51_230_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8598 298 494 3.40.50.300
1tjeA01 Alpha Beta;Roll;Ubiquitin-like (UB roll);Beta-grasp domain 0.8521 15 74 3.10.20.30
af_A0A1D6K2J3_567_643_3.10.20.30 Alpha Beta;Roll;Ubiquitin-like (UB roll);Beta-grasp domain 0.8321 12 71 3.10.20.30
ID Description Score Start End GO Terms
AF-A0A7Y4VS81-F1-model_v4 Nucleoside kinase 0.9948 4 272 GO:0000166
GO:0004829
GO:0006435
GO:0016301
AF-A0A7C5R220-F1-model_v4 Nucleoside kinase 0.9873 4 563 GO:0005524
GO:0016301
GO:0016887
AF-A0A7C7S003-F1-model_v4 Nucleoside kinase 0.9836 2 561 GO:0005524
GO:0016301
AF-A0A832CL19-F1-model_v4 Nucleoside kinase 0.9835 305 563 GO:0005524
GO:0016301
AF-A0A3M1QLJ1-F1-model_v4 Nucleoside kinase 0.9809 1 561 GO:0005524
GO:0016301
GO:0016887

Map