F344007

General Info

Members Datasets Scaffolds Average Seq Length
231 153 215 330

Family's Representative Sequence

Representative Sequence 3300009177|Ga0105248_10119408|Ga0105248_101194082
Length 371
Sequence MRGRLGFGHRAIVVMIELANVPRCLRARHAWLLAECWFAPCFTPAPKMPVHPRSILLLAFPNVQLLDVCGPLQVFASANELAAKRGQPQPYAPRVIAAEAGLVTSSSGLALQADSLRSVKGPVDTFIVPGGSGVIAAAEDSRLIHWAQRQAPRSTRVASVCSGAFVLAEAGLLDGRRVATHWARCNELAQRYPQLCVEADPIFIRDGAIWTSAGVTAGIDLALALVEEDHGRAMALDVARELVVFLKRPGGQSQFSTMLSMQKADDRFDELHAWMTAHLASDLSVPMLARRVNMSERSFMRHYKAETGRTPARAVEQLRVEAAQRLLGETTWSIKRIATRCGFGSEETMRCSFIRLLRVAPQVYRERFAIS

Samples

Sample ID Description Type Environment
1 2510065045 Paraburkholderia sprentiae WSM5005 Isolate Nodule
2 2511231027 Phyllobacterium sp. YR531 Isolate Rhizosphere
3 2512047030 Paraburkholderia tuberum STM678 Isolate Nodule
4 2515154122 Paraburkholderia atlantica JPY251 Isolate Nodule
5 2600255067 Paraburkholderia kururiensis thiooxydans NBRC 107107 Isolate Unclassified
6 2643221556 Massilia sp. Root1485 Isolate Unclassified
7 2643221684 Massilia sp. Root133 Isolate Unclassified
8 2718217991 Paraburkholderia sprentiae WSM5005 Isolate Nodule
9 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
10 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
11 2839993093 Phyllobacterium endophyticum PEPV15 Isolate Unclassified
12 2885270888 Paraburkholderia sp. UYCPa14C Isolate Unclassified
13 2902682994 Paraburkholderia atlantica CNPSo 3155 Isolate Unclassified
14 3007419365 Pseudomonas vanderleydeniana RW8P3 Isolate Unclassified
15 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
16 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
17 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
18 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
19 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
20 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
21 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
22 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
23 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
24 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
31 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
35 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
40 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
45 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
46 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
47 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
49 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
50 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
51 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
62 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
63 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
64 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
65 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
66 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
67 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
68 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
69 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
70 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
71 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
72 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
73 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
74 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
75 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
76 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
77 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
78 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
79 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
80 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
81 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
82 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
83 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
84 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
85 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
86 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
87 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
88 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
89 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
90 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
91 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
92 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
93 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
94 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
95 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
96 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
97 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
98 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
99 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
100 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
101 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
102 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
103 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
104 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
105 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
106 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
107 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
108 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
109 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
110 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
111 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
112 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
113 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
114 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
115 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
116 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
117 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
118 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
119 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
120 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
121 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
122 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
123 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
124 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
125 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
126 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
127 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
128 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
129 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
130 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
131 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
132 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
133 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
134 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
135 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
136 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
137 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
138 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
139 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
140 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
141 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
142 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
144 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
145 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
146 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
147 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
148 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
149 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
150 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
151 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
152 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
153 8047673197 Telluria mixta LMG 11547 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.51
Metatranscriptomes 0
Isolates 6.49

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.49
Nodule 1.73
Rhizoplane 5.63
Rhizosphere 73.59
Stem 0
Stem Tuber 0
Unclassified 12.55

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10002499 3300002067 Bacteria 6375
2 JGI25159J45721_1001364 3300002987 Bacteria 10195
3 rootH1_10059173 3300003316 Bacteria 8933
4 rootL2_10016611 3300003322 Bacteria 2957
5 rootH1_10233564 3300003323 Bacteria 2759
6 rootH1_10234667 3300003323 Bacteria 2807
7 Ga0055543_1002513 3300004625 Bacteria 5998
8 Ga0065165_1000099 3300005262 Bacteria 142245
9 Ga0065165_1001148 3300005262 Bacteria 30990
10 Ga0070660_100359635 3300005339 Bacteria 1200
11 Ga0070667_100022414 3300005367 Bacteria 5238
12 Ga0070663_100211056 3300005455 Bacteria 1520
13 Ga0068855_100189702 3300005563 Bacteria 2319
14 Ga0068856_100071446 3300005614 Bacteria 3436
15 Ga0081540_1003288 3300005983 Bacteria 12832
16 Ga0075428_100005656 3300006844 Bacteria 13894
17 Ga0075429_100006780 3300006880 Bacteria 9934
18 Ga0105251_10006930 3300009011 Bacteria 7099
19 Ga0105244_10002591 3300009036 Bacteria 13580
20 Ga0105240_10001007 3300009093 Bacteria 50237
21 Ga0111539_10004432 3300009094 Bacteria 18345
22 Ga0105243_10448200 3300009148 Bacteria 1210
23 Ga0105241_10067478 3300009174 Bacteria 2769
24 Ga0105248_10034949 3300009177 Bacteria 5624
25 Ga0105248_10051308 3300009177 Bacteria 4629
26 Ga0105248_10119408 3300009177 Bacteria 2974
27 Ga0105237_10033588 3300009545 Bacteria 5198
28 Ga0105239_10002601 3300010375 Bacteria 22839
29 Ga0157373_10004085 3300013100 Bacteria 10995
30 Ga0157370_10012552 3300013104 Bacteria 8783
31 Ga0157370_10066001 3300013104 Bacteria 3423
32 Ga0157374_10000219 3300013296 Bacteria 52748
33 Ga0157372_10007566 3300013307 Bacteria 11551
34 Ga0157375_10117888 3300013308 Bacteria 2761
35 Ga0157380_10002555 3300014326 Bacteria 12293
36 Ga0182006_1034361 3300015261 Bacteria 2028
37 Ga0209435_103188 3300025206 Bacteria 1881
38 Ga0209672_104441 3300025228 Bacteria 2603
39 Ga0209759_1004195 3300025256 Bacteria 5468
40 Ga0209130_1000067 3300025284 Bacteria 184277
41 Ga0209130_1000630 3300025284 Bacteria 33099
42 Ga0207426_1027258 3300025302 Bacteria 1905
43 Ga0207655_1000094 3300025728 Bacteria 196748
44 Ga0207647_10002375 3300025904 Bacteria 14283
45 Ga0207705_10013105 3300025909 Bacteria 5983
46 Ga0207654_10058196 3300025911 Bacteria 2249
47 Ga0207695_10028576 3300025913 Bacteria 6179
48 Ga0207657_10001359 3300025919 Bacteria 26061
49 Ga0207711_10022756 3300025941 Bacteria 5242
50 Ga0207711_10029503 3300025941 Bacteria 4628
51 Ga0207667_10009505 3300025949 Bacteria 11441
52 Ga0207667_10026258 3300025949 Bacteria 6364
53 Ga0207703_10190925 3300026035 Bacteria 1814
54 Ga0207678_10086934 3300026067 Bacteria 2671
55 Ga0395899_0059665 3300037312 Bacteria 2812
56 Ga0395899_0110721 3300037312 Bacteria 1975
57 Ga0395899_0130756 3300037312 Bacteria 1792
58 Ga0395900_0057459 3300037418 Bacteria 4005
59 Ga0395900_0357607 3300037418 Bacteria 1432
60 Ga0395900_0426137 3300037418 Bacteria 1287
61 Ga0395898_0057119 3300037466 Bacteria 3803
62 Ga0395898_0278347 3300037466 Bacteria 1596
63 Ga0395898_0422998 3300037466 Bacteria 1269
64 Ga0395905_0008194 3300037471 Bacteria 10320
65 Ga0395905_0103540 3300037471 Bacteria 2672
66 Ga0395905_0118393 3300037471 Bacteria 2489
67 Ga0395901_0005365 3300038443 Bacteria 12957
68 Ga0395901_0027087 3300038443 Bacteria 5887
69 Ga0395901_0027348 3300038443 Bacteria 5859
70 Ga0395901_0167828 3300038443 Bacteria 2304
71 Ga0436365_0774601 3300039437 Bacteria 4291
72 Ga0439448_0000064 3300042005 Bacteria 17783
73 Ga0439450_046310 3300042008 Bacteria 1023
74 Ga0466969_0002483 3300044656 Bacteria 9846
75 Ga0466972_0173321 3300044658 Bacteria 1012
76 Ga0466965_0000461 3300044683 Bacteria 14362
77 Ga0466965_0002510 3300044683 Bacteria 7816
78 Ga0466966_0007923 3300044684 Bacteria 7034
79 Ga0466966_0063663 3300044684 Bacteria 2323
80 Ga0466961_0000316 3300044693 Bacteria 31940
81 Ga0466964_0002429 3300044706 Bacteria 6619
82 Ga0466970_0020921 3300044765 Bacteria 3405
83 Ga0466957_0003832 3300044842 Bacteria 8315
84 Ga0466960_0050786 3300044901 Bacteria 2000
85 Ga0466959_0058338 3300045049 Bacteria 2811
86 Ga0451576_0093945 3300045051 Bacteria 3118
87 Ga0495590_0000129 3300046457 Bacteria 44482
88 Ga0495590_0000973 3300046457 Bacteria 12644
89 Ga0495629_0000061 3300046459 Bacteria 100620
90 Ga0495638_0014363 3300046460 Bacteria 5356
91 Ga0495650_0000374 3300046471 Bacteria 78199
92 Ga0495650_0002145 3300046471 Bacteria 16764
93 Ga0495650_0017672 3300046471 Bacteria 3568
94 Ga0495650_0035259 3300046471 Bacteria 2204
95 Ga0495580_0077422 3300046472 Bacteria 2319
96 Ga0495580_0100578 3300046472 Bacteria 2011
97 Ga0495580_0193349 3300046472 Bacteria 1403
98 Ga0495582_0008231 3300046473 Bacteria 5753
99 Ga0495605_0000117 3300046474 Bacteria 103262
100 Ga0495605_0001207 3300046474 Bacteria 17222
101 Ga0495605_0001848 3300046474 Bacteria 13541
102 Ga0495605_0006035 3300046474 Bacteria 7000
103 Ga0495605_0039590 3300046474 Bacteria 2360
104 Ga0495584_0000186 3300046491 Bacteria 43887
105 Ga0495584_0000791 3300046491 Bacteria 20848
106 Ga0495584_0009167 3300046491 Bacteria 5104
107 Ga0495584_0033239 3300046491 Bacteria 2609
108 Ga0495585_0017428 3300046492 Bacteria 4149
109 Ga0495607_0001435 3300046501 Bacteria 21243
110 Ga0495607_0003214 3300046501 Bacteria 12625
111 Ga0495607_0006399 3300046501 Bacteria 8294
112 Ga0495583_0012022 3300046506 Bacteria 4930
113 Ga0495583_0013716 3300046506 Bacteria 4501
114 Ga0495583_0048601 3300046506 Bacteria 1946
115 Ga0495606_0005459 3300046507 Bacteria 12169
116 Ga0495606_0013576 3300046507 Bacteria 6426
117 Ga0495606_0026417 3300046507 Bacteria 4139
118 Ga0495616_0000050 3300046513 Bacteria 108049
119 Ga0495616_0006804 3300046513 Bacteria 6890
120 Ga0495616_0040832 3300046513 Bacteria 2369
121 Ga0495616_0081344 3300046513 Bacteria 1549
122 Ga0495628_0137602 3300046516 Bacteria 1865
123 Ga0495631_0007785 3300046518 Bacteria 5434
124 Ga0495632_0000155 3300046519 Bacteria 70814
125 Ga0495632_0021310 3300046519 Bacteria 3494
126 Ga0495643_0000263 3300046522 Bacteria 76248
127 Ga0495643_0038168 3300046522 Bacteria 2631
128 Ga0495648_0011062 3300046524 Bacteria 6834
129 Ga0495648_0015087 3300046524 Bacteria 5625
130 Ga0495648_0020428 3300046524 Bacteria 4619
131 Ga0495642_0000136 3300046528 Bacteria 42707
132 Ga0495642_0012701 3300046528 Bacteria 3249
133 Ga0495654_0003006 3300046530 Bacteria 10532
134 Ga0495609_0001046 3300046538 Bacteria 19408
135 Ga0495609_0007518 3300046538 Bacteria 5431
136 Ga0495597_0000037 3300046542 Bacteria 113832
137 Ga0495645_0000406 3300046543 Bacteria 29641
138 Ga0495622_0000017 3300046557 Bacteria 176313
139 Ga0495656_0036484 3300046615 Bacteria 2025
140 Ga0495611_0101460 3300046648 Bacteria 1336
141 Ga0495659_0000420 3300046664 Bacteria 16165
142 Ga0495588_0000089 3300046674 Bacteria 191894
143 Ga0495669_0000518 3300046684 Bacteria 17541
144 Ga0495669_0000539 3300046684 Bacteria 17061
145 Ga0495669_0007352 3300046684 Bacteria 4615
146 Ga0495613_0033371 3300046689 Bacteria 3826
147 Ga0495649_0027872 3300046694 Bacteria 3132
148 Ga0495649_0131969 3300046694 Bacteria 1318
149 Ga0495589_0000974 3300046794 Bacteria 17471
150 Ga0495589_0022451 3300046794 Bacteria 3219
151 Ga0495589_0023698 3300046794 Bacteria 3125
152 Ga0495660_0000054 3300046810 Bacteria 135325
153 Ga0495660_0001986 3300046810 Bacteria 13323
154 Ga0495660_0089780 3300046810 Bacteria 1599
155 Ga0495581_0005012 3300047315 Bacteria 7674
156 Ga0495636_0001183 3300047318 Bacteria 9845
157 Ga0495672_0000388 3300047320 Bacteria 54085
158 Ga0495672_0004983 3300047320 Bacteria 10650
159 Ga0495672_0008312 3300047320 Bacteria 7684
160 Ga0495687_000023 3300047443 Bacteria 317750
161 Ga0495687_001704 3300047443 Bacteria 19530
162 Ga0495687_024218 3300047443 Bacteria 2888
163 Ga0495677_0003092 3300047445 Bacteria 6480
164 Ga0495677_0006224 3300047445 Bacteria 4507
165 Ga0495677_0008398 3300047445 Bacteria 3835
166 Ga0495679_029345 3300047446 Bacteria 1795
167 Ga0495685_000813 3300047447 Bacteria 9553
168 Ga0495685_030564 3300047447 Bacteria 1852
169 Ga0495673_0000008 3300047469 Bacteria 752462
170 Ga0495681_0010078 3300047470 Bacteria 5752
171 Ga0495686_0000075 3300047472 Bacteria 208031
172 Ga0495686_0022382 3300047472 Bacteria 4183
173 Ga0495593_0052486 3300047673 Bacteria 2155
174 Ga0495614_0035587 3300048089 Bacteria 2139
175 Ga0495626_0000800 3300048091 Bacteria 28478
176 Ga0495626_0012038 3300048091 Bacteria 4551
177 Ga0495626_0052601 3300048091 Bacteria 1877
178 Ga0496100_0239751 3300048903 Bacteria 1337
179 Ga0496101_0018530 3300048904 Bacteria 4736
180 Ga0496101_0100072 3300048904 Bacteria 2168
181 Ga0496102_0050160 3300048905 Bacteria 3799
182 Ga0496102_0419195 3300048905 Bacteria 1258
183 Ga0496104_0002398 3300048907 Bacteria 16146
184 Ga0496104_0040296 3300048907 Bacteria 4378
185 Ga0496105_0039858 3300048908 Bacteria 3872
186 Ga0496106_0000007 3300048909 Bacteria 248548
187 Ga0496106_0049338 3300048909 Bacteria 3171
188 Ga0496106_0391982 3300048909 Bacteria 1116
189 Ga0496107_0090653 3300048910 Bacteria 2233
190 Ga0496114_0005727 3300048917 Bacteria 9750
191 Ga0496117_0102099 3300048920 Bacteria 1811
192 Ga0496118_0010082 3300048921 Bacteria 9400
193 Ga0496118_0179168 3300048921 Bacteria 1283
194 Ga0496121_0000672 3300048924 Bacteria 63750
195 Ga0496121_0009676 3300048924 Bacteria 11040
196 Ga0496122_0019441 3300048925 Bacteria 6202
197 Ga0496122_0069858 3300048925 Bacteria 2513
198 Ga0496123_0004249 3300048926 Bacteria 15252
199 Ga0496124_0029367 3300048927 Bacteria 4901
200 Ga0496124_0033281 3300048927 Bacteria 4535
201 Ga0496124_0108543 3300048927 Bacteria 2238
202 Ga0496126_0000065 3300048929 Bacteria 252549
203 Ga0496126_0011309 3300048929 Bacteria 9257
204 Ga0501036_0334446 3300049572 Bacteria 1265
205 Ga0501047_0206950 3300049581 Bacteria 1821
206 Ga0501083_0025689 3300049744 Bacteria 4077
207 nmdc:mga09592_5620_c1 3300050508 Bacteria 10218
208 nmdc:mga08y16_22727_c1 3300050511 Bacteria 6621
209 Ga0500644_0049202 3300053088 Bacteria 1438
210 Ga0500646_0000707 3300053090 Bacteria 9486
211 Ga0500650_0007011 3300053098 Bacteria 4352
212 Ga0500594_0006349 3300053118 Bacteria 2652
213 Ga0500603_001646 3300053150 Bacteria 5035
214 Ga0500604_0000154 3300053151 Bacteria 20178
215 Ga0500636_0007409 3300053177 Bacteria 6349

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300053177 Ga0500636_0007409 Ga0500636_0007409_5485_6309 274
2 3300048909 Ga0496106_0391982 Ga0496106_0391982_11_838 275
3 3300025256 Ga0209759_1004195 Ga0209759_10041955 305
4 3300005339 Ga0070660_100359635 Ga0070660_1003596351 307
5 3300013104 Ga0157370_10066001 Ga0157370_100660015 307
6 3300025909 Ga0207705_10013105 Ga0207705_100131052 307
7 3300025949 Ga0207667_10009505 Ga0207667_1000950512 307
8 3300044658 Ga0466972_0173321 Ga0466972_0173321_31_972 308
9 3300048925 Ga0496122_0019441 Ga0496122_0019441_596_1534 308
10 3300048926 Ga0496123_0004249 Ga0496123_0004249_5271_6209 308
11 3300044901 Ga0466960_0050786 Ga0466960_0050786_399_1370 309
12 3300046472 Ga0495580_0193349 Ga0495580_0193349_265_1242 311
13 3300006844 Ga0075428_100005656 Ga0075428_1000056566 313
14 3300006880 Ga0075429_100006780 Ga0075429_1000067808 313
15 3300009094 Ga0111539_10004432 Ga0111539_1000443215 313
16 3300050508 nmdc:mga09592_5620_c1 nmdc:mga09592_5620_c1_7834_8784 313
17 3300050511 nmdc:mga08y16_22727_c1 nmdc:mga08y16_22727_c1_1376_2326 313
18 3300048905 Ga0496102_0419195 Ga0496102_0419195_123_1160 314
19 3300009148 Ga0105243_10448200 Ga0105243_104482002 315
20 3300045051 Ga0451576_0093945 Ga0451576_0093945_107_1069 315
21 3300046674 Ga0495588_0000089 Ga0495588_0000089_119410_120393 316
22 3300046810 Ga0495660_0001986 Ga0495660_0001986_8306_9268 316
23 3300048925 Ga0496122_0069858 Ga0496122_0069858_191_1153 316
24 iso_pu_bacteria 2839993093 2839996605 316
25 3300046474 Ga0495605_0039590 Ga0495605_0039590_82_1059 317
26 iso_pu_bacteria 2511231027 2511388970 317
27 3300003322 rootL2_10016611 rootL2_100166115 318
28 3300003323 rootH1_10234667 rootH1_102346672 318
29 3300014326 Ga0157380_10002555 Ga0157380_100025555 318
30 3300037312 Ga0395899_0059665 Ga0395899_0059665_1616_2605 318
31 3300037312 Ga0395899_0130756 Ga0395899_0130756_336_1325 318
32 3300037418 Ga0395900_0057459 Ga0395900_0057459_439_1437 318
33 3300037418 Ga0395900_0426137 Ga0395900_0426137_35_1033 318
34 3300037466 Ga0395898_0422998 Ga0395898_0422998_61_1050 318
35 3300037471 Ga0395905_0103540 Ga0395905_0103540_1395_2414 318
36 3300037471 Ga0395905_0118393 Ga0395905_0118393_1060_2058 318
37 3300038443 Ga0395901_0005365 Ga0395901_0005365_4806_5825 318
38 3300038443 Ga0395901_0027348 Ga0395901_0027348_4423_5421 318
39 3300042008 Ga0439450_046310 Ga0439450_046310_21_1010 318
40 3300044683 Ga0466965_0000461 Ga0466965_0000461_10078_11067 318
41 3300044706 Ga0466964_0002429 Ga0466964_0002429_4835_5824 318
42 3300044765 Ga0466970_0020921 Ga0466970_0020921_1668_2657 318
43 3300044842 Ga0466957_0003832 Ga0466957_0003832_3674_4663 318
44 3300046457 Ga0495590_0000129 Ga0495590_0000129_23778_24773 318
45 3300046457 Ga0495590_0000129 Ga0495590_0000129_28141_29139 318
46 3300046457 Ga0495590_0000973 Ga0495590_0000973_1778_2776 318
47 3300046471 Ga0495650_0017672 Ga0495650_0017672_2184_3161 318
48 3300046474 Ga0495605_0000117 Ga0495605_0000117_42109_43098 318
49 3300046474 Ga0495605_0006035 Ga0495605_0006035_491_1507 318
50 3300046491 Ga0495584_0000186 Ga0495584_0000186_4068_5222 318
51 3300046491 Ga0495584_0000791 Ga0495584_0000791_6265_7281 318
52 3300046501 Ga0495607_0003214 Ga0495607_0003214_9220_10209 318
53 3300046501 Ga0495607_0006399 Ga0495607_0006399_5764_6753 318
54 3300046506 Ga0495583_0012022 Ga0495583_0012022_1263_2279 318
55 3300046507 Ga0495606_0005459 Ga0495606_0005459_2990_4006 318
56 3300046507 Ga0495606_0013576 Ga0495606_0013576_2268_3422 318
57 3300046507 Ga0495606_0026417 Ga0495606_0026417_3022_4020 318
58 3300046513 Ga0495616_0000050 Ga0495616_0000050_7965_8963 318
59 3300046513 Ga0495616_0040832 Ga0495616_0040832_670_1659 318
60 3300046513 Ga0495616_0081344 Ga0495616_0081344_368_1384 318
61 3300046518 Ga0495631_0007785 Ga0495631_0007785_2133_3131 318
62 3300046519 Ga0495632_0000155 Ga0495632_0000155_46047_47045 318
63 3300046519 Ga0495632_0021310 Ga0495632_0021310_1402_2418 318
64 3300046522 Ga0495643_0000263 Ga0495643_0000263_74788_75777 318
65 3300046522 Ga0495643_0038168 Ga0495643_0038168_1604_2593 318
66 3300046524 Ga0495648_0011062 Ga0495648_0011062_2622_3638 318
67 3300046524 Ga0495648_0015087 Ga0495648_0015087_2689_3678 318
68 3300046528 Ga0495642_0000136 Ga0495642_0000136_16454_17452 318
69 3300046530 Ga0495654_0003006 Ga0495654_0003006_7406_8404 318
70 3300046538 Ga0495609_0007518 Ga0495609_0007518_2274_3272 318
71 3300046615 Ga0495656_0036484 Ga0495656_0036484_179_1168 318
72 3300046648 Ga0495611_0101460 Ga0495611_0101460_143_1159 318
73 3300046684 Ga0495669_0000539 Ga0495669_0000539_2365_3363 318
74 3300046684 Ga0495669_0007352 Ga0495669_0007352_2498_3514 318
75 3300046694 Ga0495649_0131969 Ga0495649_0131969_30_1133 318
76 3300046794 Ga0495589_0000974 Ga0495589_0000974_15914_16903 318
77 3300046794 Ga0495589_0022451 Ga0495589_0022451_1948_2964 318
78 3300046810 Ga0495660_0000054 Ga0495660_0000054_472_1461 318
79 3300046810 Ga0495660_0089780 Ga0495660_0089780_140_1129 318
80 3300047320 Ga0495672_0000388 Ga0495672_0000388_38668_39684 318
81 3300047320 Ga0495672_0004983 Ga0495672_0004983_7925_8941 318
82 3300047320 Ga0495672_0008312 Ga0495672_0008312_2065_3054 318
83 3300047443 Ga0495687_000023 Ga0495687_000023_311250_312404 318
84 3300047443 Ga0495687_001704 Ga0495687_001704_16065_17054 318
85 3300047443 Ga0495687_024218 Ga0495687_024218_1262_2293 318
86 3300047445 Ga0495677_0003092 Ga0495677_0003092_3324_4313 318
87 3300047445 Ga0495677_0006224 Ga0495677_0006224_1183_2187 318
88 3300047447 Ga0495685_000813 Ga0495685_000813_3447_4463 318
89 3300048091 Ga0495626_0000800 Ga0495626_0000800_21151_22140 318
90 3300048091 Ga0495626_0012038 Ga0495626_0012038_1382_2398 318
91 3300048903 Ga0496100_0239751 Ga0496100_0239751_248_1237 318
92 3300048907 Ga0496104_0002398 Ga0496104_0002398_9954_10943 318
93 3300048909 Ga0496106_0000007 Ga0496106_0000007_60512_61480 318
94 3300048920 Ga0496117_0102099 Ga0496117_0102099_431_1399 318
95 3300048921 Ga0496118_0010082 Ga0496118_0010082_4079_5047 318
96 3300048924 Ga0496121_0009676 Ga0496121_0009676_7587_8555 318
97 3300048927 Ga0496124_0033281 Ga0496124_0033281_2397_3365 318
98 3300048927 Ga0496124_0108543 Ga0496124_0108543_1183_2199 318
99 3300048929 Ga0496126_0000065 Ga0496126_0000065_123852_124820 318
100 3300049572 Ga0501036_0334446 Ga0501036_0334446_42_1031 318
101 iso_pu_bacteria 2643221556 2643798626 318
102 iso_pu_bacteria 2643221684 2644472587 318
103 iso_pu_bacteria 8047673197 8047675650 318
104 3300002987 JGI25159J45721_1001364 JGI25159J45721_10013644 319
105 3300004625 Ga0055543_1002513 Ga0055543_10025135 319
106 3300005262 Ga0065165_1000099 Ga0065165_100009965 319
107 3300005262 Ga0065165_1001148 Ga0065165_10011484 319
108 3300005983 Ga0081540_1003288 Ga0081540_100328814 319
109 3300025206 Ga0209435_103188 Ga0209435_1031881 319
110 3300025228 Ga0209672_104441 Ga0209672_1044414 319
111 3300025284 Ga0209130_1000067 Ga0209130_100006753 319
112 3300025284 Ga0209130_1000630 Ga0209130_10006303 319
113 3300025302 Ga0207426_1027258 Ga0207426_10272581 319
114 3300026035 Ga0207703_10190925 Ga0207703_101909252 319
115 3300037312 Ga0395899_0110721 Ga0395899_0110721_756_1745 319
116 3300037418 Ga0395900_0357607 Ga0395900_0357607_390_1379 319
117 3300037466 Ga0395898_0057119 Ga0395898_0057119_684_1643 319
118 3300037466 Ga0395898_0278347 Ga0395898_0278347_119_1108 319
119 3300037471 Ga0395905_0008194 Ga0395905_0008194_5743_6729 319
120 3300038443 Ga0395901_0027087 Ga0395901_0027087_2411_3400 319
121 3300039437 Ga0436365_0774601 Ga0436365_0774601_1502_2497 319
122 3300044656 Ga0466969_0002483 Ga0466969_0002483_1807_2778 319
123 3300044684 Ga0466966_0007923 Ga0466966_0007923_2450_3421 319
124 3300044684 Ga0466966_0063663 Ga0466966_0063663_478_1581 319
125 3300044693 Ga0466961_0000316 Ga0466961_0000316_9491_10462 319
126 3300045049 Ga0466959_0058338 Ga0466959_0058338_1517_2488 319
127 3300046474 Ga0495605_0001207 Ga0495605_0001207_8071_9054 319
128 3300046491 Ga0495584_0009167 Ga0495584_0009167_3562_4578 319
129 3300046501 Ga0495607_0001435 Ga0495607_0001435_9595_10611 319
130 3300046506 Ga0495583_0048601 Ga0495583_0048601_783_1799 319
131 3300046513 Ga0495616_0006804 Ga0495616_0006804_2313_3329 319
132 3300046524 Ga0495648_0020428 Ga0495648_0020428_3101_4105 319
133 3300046538 Ga0495609_0001046 Ga0495609_0001046_15841_16857 319
134 3300046542 Ga0495597_0000037 Ga0495597_0000037_47955_48938 319
135 3300046664 Ga0495659_0000420 Ga0495659_0000420_8397_9413 319
136 3300046684 Ga0495669_0000518 Ga0495669_0000518_4792_5808 319
137 3300046694 Ga0495649_0027872 Ga0495649_0027872_625_1641 319
138 3300047318 Ga0495636_0001183 Ga0495636_0001183_8053_9069 319
139 3300047445 Ga0495677_0008398 Ga0495677_0008398_527_1543 319
140 3300047469 Ga0495673_0000008 Ga0495673_0000008_548227_549228 319
141 3300047470 Ga0495681_0010078 Ga0495681_0010078_4058_5074 319
142 3300048907 Ga0496104_0040296 Ga0496104_0040296_2283_3362 319
143 3300048924 Ga0496121_0000672 Ga0496121_0000672_795_1766 319
144 3300048927 Ga0496124_0029367 Ga0496124_0029367_3616_4644 319
145 3300048929 Ga0496126_0011309 Ga0496126_0011309_7214_8185 319
146 3300049581 Ga0501047_0206950 Ga0501047_0206950_794_1783 319
147 3300049744 Ga0501083_0025689 Ga0501083_0025689_2348_3337 319
148 3300053088 Ga0500644_0049202 Ga0500644_0049202_90_1145 319
149 3300053090 Ga0500646_0000707 Ga0500646_0000707_2735_3790 319
150 3300053098 Ga0500650_0007011 Ga0500650_0007011_1679_2734 319
151 3300053118 Ga0500594_0006349 Ga0500594_0006349_1183_2187 319
152 3300053150 Ga0500603_001646 Ga0500603_001646_2661_3653 319
153 3300053151 Ga0500604_0000154 Ga0500604_0000154_10911_11966 319
154 iso_pu_bacteria 2600255067 2600815499 319
155 iso_pu_bacteria 2738541281 2738745116 319
156 iso_pu_bacteria 2738543032 2739354346 319
157 iso_pu_bacteria 3007419365 3007423735 319
158 3300002067 JGI24735J21928_10002499 JGI24735J21928_100024995 320
159 3300003316 rootH1_10059173 rootH1_100591736 320
160 3300003323 rootH1_10233564 rootH1_102335642 320
161 3300005367 Ga0070667_100022414 Ga0070667_1000224142 320
162 3300005455 Ga0070663_100211056 Ga0070663_1002110562 320
163 3300005563 Ga0068855_100189702 Ga0068855_1001897022 320
164 3300005614 Ga0068856_100071446 Ga0068856_1000714463 320
165 3300009011 Ga0105251_10006930 Ga0105251_100069303 320
166 3300009036 Ga0105244_10002591 Ga0105244_100025915 320
167 3300009093 Ga0105240_10001007 Ga0105240_1000100739 320
168 3300009174 Ga0105241_10067478 Ga0105241_100674782 320
169 3300009177 Ga0105248_10034949 Ga0105248_100349494 320
170 3300009177 Ga0105248_10051308 Ga0105248_100513082 320
171 3300009177 Ga0105248_10119408 Ga0105248_101194082 320
172 3300009545 Ga0105237_10033588 Ga0105237_100335884 320
173 3300010375 Ga0105239_10002601 Ga0105239_1000260121 320
174 3300013100 Ga0157373_10004085 Ga0157373_100040854 320
175 3300013104 Ga0157370_10012552 Ga0157370_1001255211 320
176 3300013296 Ga0157374_10000219 Ga0157374_1000021941 320
177 3300013307 Ga0157372_10007566 Ga0157372_1000756612 320
178 3300013308 Ga0157375_10117888 Ga0157375_101178882 320
179 3300015261 Ga0182006_1034361 Ga0182006_10343612 320
180 3300025728 Ga0207655_1000094 Ga0207655_1000094100 320
181 3300025904 Ga0207647_10002375 Ga0207647_100023753 320
182 3300025911 Ga0207654_10058196 Ga0207654_100581962 320
183 3300025913 Ga0207695_10028576 Ga0207695_100285767 320
184 3300025919 Ga0207657_10001359 Ga0207657_100013595 320
185 3300025941 Ga0207711_10022756 Ga0207711_100227564 320
186 3300025941 Ga0207711_10029503 Ga0207711_100295033 320
187 3300025949 Ga0207667_10026258 Ga0207667_100262587 320
188 3300026067 Ga0207678_10086934 Ga0207678_100869344 320
189 3300038443 Ga0395901_0167828 Ga0395901_0167828_908_1870 320
190 3300042005 Ga0439448_0000064 Ga0439448_0000064_14116_15078 320
191 3300044683 Ga0466965_0002510 Ga0466965_0002510_5462_6445 320
192 3300046459 Ga0495629_0000061 Ga0495629_0000061_83391_84377 320
193 3300046460 Ga0495638_0014363 Ga0495638_0014363_690_1670 320
194 3300046471 Ga0495650_0000374 Ga0495650_0000374_61169_62155 320
195 3300046471 Ga0495650_0002145 Ga0495650_0002145_12505_13479 320
196 3300046471 Ga0495650_0035259 Ga0495650_0035259_353_1333 320
197 3300046472 Ga0495580_0077422 Ga0495580_0077422_1228_2214 320
198 3300046472 Ga0495580_0100578 Ga0495580_0100578_296_1270 320
199 3300046473 Ga0495582_0008231 Ga0495582_0008231_3854_4840 320
200 3300046474 Ga0495605_0001848 Ga0495605_0001848_6061_7041 320
201 3300046491 Ga0495584_0033239 Ga0495584_0033239_199_1179 320
202 3300046492 Ga0495585_0017428 Ga0495585_0017428_2386_3366 320
203 3300046506 Ga0495583_0013716 Ga0495583_0013716_784_1770 320
204 3300046516 Ga0495628_0137602 Ga0495628_0137602_785_1789 320
205 3300046528 Ga0495642_0012701 Ga0495642_0012701_935_1921 320
206 3300046543 Ga0495645_0000406 Ga0495645_0000406_13862_14848 320
207 3300046557 Ga0495622_0000017 Ga0495622_0000017_21869_22960 320
208 3300046689 Ga0495613_0033371 Ga0495613_0033371_718_1704 320
209 3300046794 Ga0495589_0023698 Ga0495589_0023698_815_1795 320
210 3300047315 Ga0495581_0005012 Ga0495581_0005012_5403_6389 320
211 3300047446 Ga0495679_029345 Ga0495679_029345_458_1444 320
212 3300047447 Ga0495685_030564 Ga0495685_030564_140_1120 320
213 3300047472 Ga0495686_0000075 Ga0495686_0000075_65610_66614 320
214 3300047472 Ga0495686_0022382 Ga0495686_0022382_1747_2721 320
215 3300047673 Ga0495593_0052486 Ga0495593_0052486_1091_2077 320
216 3300048089 Ga0495614_0035587 Ga0495614_0035587_70_1056 320
217 3300048091 Ga0495626_0052601 Ga0495626_0052601_528_1508 320
218 3300048904 Ga0496101_0018530 Ga0496101_0018530_422_1408 320
219 3300048904 Ga0496101_0100072 Ga0496101_0100072_1059_2039 320
220 3300048905 Ga0496102_0050160 Ga0496102_0050160_1098_2078 320
221 3300048908 Ga0496105_0039858 Ga0496105_0039858_641_1627 320
222 3300048909 Ga0496106_0049338 Ga0496106_0049338_977_1957 320
223 3300048910 Ga0496107_0090653 Ga0496107_0090653_207_1187 320
224 3300048917 Ga0496114_0005727 Ga0496114_0005727_8206_9192 320
225 3300048921 Ga0496118_0179168 Ga0496118_0179168_120_1100 320
226 iso_pu_bacteria 2510065045 2510247850 320
227 iso_pu_bacteria 2512047030 2512350179 320
228 iso_pu_bacteria 2515154122 2515682201 320
229 iso_pu_bacteria 2718217991 2719643717 320
230 iso_pu_bacteria 2885270888 2885274366 320
231 iso_pu_bacteria 2902682994 2902690823 320

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12833

HTH_18

Helix-turn-helix domain

288

367

0.98

PF01965

DJ-1_PfpI

DJ-1/PfpI family

53

228

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
3w6v-assembly1.cif.gz_A crystal structure of the dna-binding domain of adpa, the global transcriptional factor, in complex with a target dna 0.9464 216 317
3mgk-assembly1.cif.gz_A crystal structure of probable protease/amidase from clostridium acetobutylicum atcc 824 0.9323 1 196
6swi-assembly1.cif.gz_A the c-terminal domain of arat, a response regulator from geobacillus stearothermophilus 0.9298 216 320
3lsg-assembly1.cif.gz_A the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.9191 219 314
3mkl-assembly2.cif.gz_B crystal structure of dna-binding transcriptional dual regulator from escherichia coli k-12 0.9089 216 316
ID Description Score Start End Superfamily
af_P77379_178_282_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9667 222 317 1.10.10.60
af_P32677_219_275_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9659 268 317 1.10.10.60
1d5yD02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9524 268 315 1.10.10.60
3lsgA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9504 270 314 1.10.10.60
3w6vA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9464 216 317 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A0T6XF10-F1-model_v4 HTH araC/xylS-type domain-containing protein 0.9558 221 319 GO:0003700
GO:0043565
AF-A0A6P0ZL01-F1-model_v4 deleted 0.9555 216 315
AF-A0A6V8JZR6-F1-model_v4 HTH araC/xylS-type domain-containing protein 0.955 221 316 GO:0003700
GO:0043565
AF-A0A644U0M6-F1-model_v4 DNA gyrase inhibitor 0.9443 222 315 GO:0003700
GO:0043565
AF-A0A349URB2-F1-model_v4 AraC family transcriptional regulator 0.942 220 314 GO:0003700
GO:0043565

Feature Viewer

pLDDT pTM Quality
88.69 0.67 Medium
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Predicted Structure (AlphaFold2)

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