F344520

General Info

Members Datasets Scaffolds Average Seq Length
231 193 214 338

Family's Representative Sequence

Representative Sequence 3300053090|Ga0500646_0000677|Ga0500646_0000677_4581_5750
Length 378
Sequence MKPSGNFADIVVEQRPALSTMSTRPIEGANMMQRTGRRAVSVLACDSSTNTANGDKKVAVSLITKTSTNPFFVAMQEGAKKAAEAEGVTLTLAAGKADGDEASQVTAIENAIARGDAGILITPNGPGVNPAIKKARDAGLYVIALDTPPDPADTVDITFATDNFKAGQLIGKWTAAQLGGKAATIALLDLFNDKIVSVDYNRDQGFLNGMGIDTLDKKKNGDEAPTGNYSGGTYQIVCNEPTNGAEDGGRTAMERCLTKNPGINVVYTINEPAAVGARTAMKAAGTKDVLVVSVDGGCNGVSQVKNGQINATSQQYPLKMAELGVKAIKQIATGGQKPSVTSGLDFFDTGVALVTDKAASGVQSIDSTEGAKLCWGTV

Samples

Sample ID Description Type Environment
1 2508501039 Frankia saprophytica CN3 Isolate Nodule
2 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
3 2643221549 Agromyces sp. Root1464 Isolate Unclassified
4 2643221572 Leifsonia sp. Root60 Isolate Unclassified
5 2643221649 Leifsonia sp. Root4 Isolate Unclassified
6 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
7 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
8 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
9 2687453737 Frankia sp. BMG5.36 Isolate Nodule
10 2808606372 Agromyces sp. 23-23 Isolate Unclassified
11 2808606700 Arthrobacter agilis UMCV2 Isolate Rhizosphere
12 2891373044 Shinella sp. AETb1-6 Isolate Rhizosphere
13 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
14 2902582711 Micromonospora sp. AP08 Isolate Unclassified
15 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
16 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
17 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
18 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
20 3300003575 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_25 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
21 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
22 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
23 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
24 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
25 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
26 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
27 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
28 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
29 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
30 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
31 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
32 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
33 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
34 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
35 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
36 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
37 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
38 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
39 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
40 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
41 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
42 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
43 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
44 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
45 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
46 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
47 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
48 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
49 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
50 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
51 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
52 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
53 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
54 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
55 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
56 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
57 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
58 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
59 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
60 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
61 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
62 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
63 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
64 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
65 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
66 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
67 3300012487 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510 Metagenome Rhizosphere
68 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
69 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
70 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
71 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
72 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
73 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
74 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
75 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
76 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
77 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
78 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
99 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
101 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
102 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
103 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
104 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
105 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
106 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
107 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
108 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
109 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
110 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
111 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
112 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
113 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
114 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
115 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
116 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
117 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
118 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
119 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
120 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
121 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
122 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
123 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
124 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
125 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
126 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
127 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
128 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
129 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
130 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
131 3300042126 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218F_E14_070516_87 Metagenome Rhizosphere
132 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
133 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
134 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
135 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
136 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
137 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
138 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
139 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
140 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
141 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
142 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
143 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
144 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
145 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
146 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
147 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
148 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
149 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
150 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
152 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
153 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
154 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
155 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
156 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
157 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
158 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
159 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
160 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
161 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
162 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
163 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
164 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
165 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
166 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
167 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
168 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
169 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
170 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
171 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
172 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
173 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
174 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
175 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
176 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
177 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
178 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
179 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
180 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
181 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
182 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
183 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
184 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
185 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
186 3300059493 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 19R_SW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
187 3300059510 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 55R_CD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
188 3300059605 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 71R_SD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
189 3300059630 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 165R_SD_T3_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
190 3300059641 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 9R_AW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
191 3300059645 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 18R_SW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
192 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
193 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 87.88
Metatranscriptomes 4.76
Isolates 7.36

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.63
Nodule 1.3
Rhizoplane 4.33
Rhizosphere 82.25
Stem 0
Stem Tuber 0
Unclassified 6.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25150J39212_1000026 3300002774 Bacteria 107804
2 JGI25406J46586_10008174 3300003203 Bacteria 4750
3 JGI25407J50210_10001247 3300003373 Bacteria 5687
4 Ga0007409J51694_1024841 3300003575 Bacteria 1244
5 Ga0070683_100021034 3300005329 Bacteria 5819
6 Ga0068869_100004998 3300005334 Bacteria 8303
7 Ga0068869_100016852 3300005334 Bacteria 4938
8 Ga0070680_100380395 3300005336 Bacteria 1202
9 Ga0070682_100005801 3300005337 Bacteria 6896
10 Ga0070682_100030148 3300005337 Bacteria 3271
11 Ga0068868_100010459 3300005338 Bacteria 6719
12 Ga0068868_100170063 3300005338 Bacteria 1804
13 Ga0070661_100030211 3300005344 Bacteria 3914
14 Ga0070668_100058340 3300005347 Bacteria 2986
15 Ga0070675_100007030 3300005354 Bacteria 8653
16 Ga0070674_100014145 3300005356 Bacteria 4955
17 Ga0070659_100128353 3300005366 Bacteria 2058
18 Ga0070700_100037018 3300005441 Bacteria 2964
19 Ga0070663_100001111 3300005455 Bacteria 14785
20 Ga0070678_100046029 3300005456 Bacteria 3126
21 Ga0068867_100045294 3300005459 Bacteria 3225
22 Ga0070707_100327629 3300005468 Bacteria 1488
23 Ga0070698_100026399 3300005471 Bacteria 6045
24 Ga0070672_100398770 3300005543 Bacteria 1179
25 Ga0070664_100001559 3300005564 Bacteria 18311
26 Ga0068854_100091305 3300005578 Bacteria 2266
27 Ga0070702_100087334 3300005615 Bacteria 1883
28 Ga0068852_100005678 3300005616 Bacteria 8948
29 Ga0068852_100077924 3300005616 Bacteria 2931
30 Ga0068861_100259161 3300005719 Bacteria 1488
31 Ga0068863_100042867 3300005841 Bacteria 4299
32 Ga0068862_100090114 3300005844 Bacteria 2669
33 Ga0081455_10004660 3300005937 Bacteria 15267
34 Ga0081455_10018370 3300005937 Bacteria 6664
35 Ga0081455_10027308 3300005937 Bacteria 5232
36 Ga0081538_10000147 3300005981 Bacteria 73397
37 Ga0081539_10000194 3300005985 Bacteria 141263
38 Ga0075363_100008308 3300006048 Bacteria 4828
39 Ga0075363_100017996 3300006048 Bacteria 3513
40 Ga0075364_10031614 3300006051 Bacteria 3400
41 Ga0075364_10032406 3300006051 Bacteria 3359
42 Ga0075432_10000076 3300006058 Bacteria 19908
43 Ga0075367_10001032 3300006178 Bacteria 11484
44 Ga0075428_100003665 3300006844 Bacteria 16844
45 Ga0075431_100149584 3300006847 Bacteria 2405
46 Ga0075433_10001214 3300006852 Bacteria 18799
47 Ga0075434_100000624 3300006871 Bacteria 27304
48 Ga0075429_100013889 3300006880 Bacteria 6985
49 Ga0068865_100014248 3300006881 Bacteria 5049
50 Ga0075435_100002217 3300007076 Bacteria 12822
51 Ga0111539_10002723 3300009094 Bacteria 23442
52 Ga0111539_10009396 3300009094 Bacteria 12343
53 Ga0105245_10001764 3300009098 Bacteria 19712
54 Ga0105245_10009147 3300009098 Bacteria 8639
55 Ga0105245_10082303 3300009098 Bacteria 2944
56 Ga0114129_10010725 3300009147 Bacteria 13064
57 Ga0105243_10002777 3300009148 Bacteria 14549
58 Ga0105243_10027404 3300009148 Bacteria 4366
59 Ga0105243_10043699 3300009148 Bacteria 3512
60 Ga0105242_10004347 3300009176 Bacteria 11034
61 Ga0105248_10275638 3300009177 Bacteria 1894
62 Ga0105249_10027634 3300009553 Bacteria 5119
63 Ga0105249_10139844 3300009553 Bacteria 2320
64 Ga0105239_10301521 3300010375 Bacteria 1804
65 Ga0157321_1000379 3300012487 Bacteria 2025
66 Ga0157374_10107919 3300013296 Bacteria 2675
67 Ga0163162_10038643 3300013306 Bacteria 4763
68 Ga0157372_10008088 3300013307 Bacteria 11185
69 Ga0157372_10372105 3300013307 Bacteria 1665
70 Ga0157380_10216184 3300014326 Bacteria 1712
71 Ga0157380_10417885 3300014326 Bacteria 1278
72 Ga0157377_10012159 3300014745 Bacteria 4321
73 Ga0163161_10037369 3300017792 Bacteria 3481
74 Ga0197907_10116935 3300020069 Bacteria 1923
75 Ga0206356_10915364 3300020070 Bacteria 1454
76 Ga0206350_10433884 3300020080 Bacteria 3191
77 Ga0206354_10888305 3300020081 Bacteria 1673
78 Ga0207688_10008640 3300025901 Bacteria 5545
79 Ga0207688_10053413 3300025901 Bacteria 2265
80 Ga0207643_10031195 3300025908 Bacteria 2969
81 Ga0207649_10091732 3300025920 Bacteria 1990
82 Ga0207646_10242942 3300025922 Bacteria 1627
83 Ga0207687_10127472 3300025927 Bacteria 1913
84 Ga0207706_10005166 3300025933 Bacteria 12180
85 Ga0207706_10008235 3300025933 Bacteria 9621
86 Ga0207686_10028652 3300025934 Bacteria 3276
87 Ga0207709_10006736 3300025935 Bacteria 6433
88 Ga0207669_10111227 3300025937 Bacteria 1836
89 Ga0207691_10199694 3300025940 Bacteria 1741
90 Ga0207691_10303017 3300025940 Bacteria 1372
91 Ga0207689_10068041 3300025942 Bacteria 2927
92 Ga0207679_10007149 3300025945 Bacteria 7070
93 Ga0207712_10048211 3300025961 Bacteria 2962
94 Ga0207712_10176046 3300025961 Bacteria 1676
95 Ga0207668_10006033 3300025972 Bacteria 7145
96 Ga0207640_10075857 3300025981 Bacteria 2280
97 Ga0207678_10001627 3300026067 Bacteria 20595
98 Ga0207648_10019717 3300026089 Bacteria 6085
99 Ga0207675_100070738 3300026118 Bacteria 3261
100 Ga0207675_100169942 3300026118 Bacteria 2084
101 Ga0207683_10021280 3300026121 Bacteria 5550
102 Ga0207683_10130838 3300026121 Bacteria 2257
103 Ga0207698_10030406 3300026142 Bacteria 3883
104 Ga0207698_10058392 3300026142 Bacteria 2990
105 Ga0207428_10000246 3300027907 Bacteria 73697
106 Ga0268266_10203748 3300028379 Bacteria 1812
107 Ga0307512_10135116 3300030522 Bacteria 1531
108 Ga0307513_10001948 3300031456 Bacteria 29204
109 Ga0307408_100080143 3300031548 Bacteria 2438
110 Ga0307514_10002953 3300031649 Bacteria 16894
111 Ga0316575_10028963 3300031665 Bacteria 2160
112 Ga0316576_10073312 3300031727 Bacteria 2529
113 Ga0316578_10077140 3300031728 Bacteria 1978
114 Ga0307405_10034456 3300031731 Bacteria 3013
115 Ga0307410_10002643 3300031852 Bacteria 8735
116 Ga0307410_10019209 3300031852 Bacteria 4151
117 Ga0307406_10000033 3300031901 Bacteria 83943
118 Ga0307406_10012406 3300031901 Bacteria 4860
119 Ga0307407_10001751 3300031903 Bacteria 8100
120 Ga0307407_10010285 3300031903 Bacteria 4406
121 Ga0307412_10063103 3300031911 Bacteria 2498
122 Ga0307409_100000041 3300031995 Bacteria 44759
123 Ga0307409_100020526 3300031995 Bacteria 4505
124 Ga0307409_100160046 3300031995 Bacteria 1968
125 Ga0307416_100030465 3300032002 Bacteria 4048
126 Ga0307416_100054956 3300032002 Bacteria 3203
127 Ga0307414_10015378 3300032004 Bacteria 4617
128 Ga0307411_10012072 3300032005 Bacteria 4693
129 Ga0307415_100001840 3300032126 Bacteria 10403
130 Ga0307415_100019072 3300032126 Bacteria 4157
131 Ga0307415_100019247 3300032126 Bacteria 4141
132 Ga0307415_100030297 3300032126 Bacteria 3471
133 Ga0316583_10014053 3300032133 Bacteria 2888
134 Ga0316574_0039207 3300035398 Bacteria 2911
135 Ga0316582_0015613 3300036647 Bacteria 4349
136 Ga0316584_0001530 3300036712 Bacteria 13964
137 Ga0395900_0040475 3300037418 Bacteria 4803
138 Ga0395898_0031402 3300037466 Bacteria 5307
139 Ga0395905_0016925 3300037471 Bacteria 6925
140 Ga0395901_0020542 3300038443 Bacteria 6759
141 Ga0451789_0629953 3300041443 Bacteria 3449
142 Ga0451793_0407050 3300041452 Bacteria 2495
143 Ga0451793_0518084 3300041452 Bacteria 2014
144 Ga0451797_0058614 3300041453 Bacteria 1695
145 Ga0451797_0403560 3300041453 Bacteria 1301
146 Ga0451800_0088613 3300041459 Bacteria 2445
147 Ga0451833_1208534 3300041491 Bacteria 1311
148 Ga0451853_1134849 3300041512 Bacteria 4331
149 Ga0451853_3261180 3300041512 Bacteria 2241
150 Ga0450888_001129 3300042126 Bacteria 2542
151 Ga0450907_005949 3300042146 Bacteria 2047
152 Ga0439464_0000820 3300042439 Bacteria 6854
153 Ga0439460_0006826 3300042461 Bacteria 2842
154 Ga0466965_0007799 3300044683 Bacteria 4931
155 Ga0495638_0062146 3300046460 Bacteria 2306
156 Ga0495664_0109510 3300046477 Bacteria 1667
157 Ga0495608_0243212 3300046511 Bacteria 1124
158 Ga0495631_0028647 3300046518 Bacteria 2540
159 Ga0495609_0052007 3300046538 Bacteria 1823
160 Ga0495645_0045799 3300046543 Bacteria 3191
161 Ga0495635_0118002 3300046663 Bacteria 1811
162 Ga0495671_0036911 3300046692 Bacteria 2474
163 Ga0495674_0139794 3300047319 Bacteria 2036
164 Ga0495676_0143559 3300047321 Bacteria 1708
165 Ga0496104_0083698 3300048907 Bacteria 3043
166 Ga0496108_0361947 3300048911 Bacteria 1266
167 Ga0496114_0004761 3300048917 Bacteria 10564
168 Ga0496114_0333307 3300048917 Bacteria 1341
169 Ga0496126_0046754 3300048929 Bacteria 3966
170 Ga0501031_0041328 3300049568 Bacteria 3011
171 Ga0501032_0006089 3300049569 Bacteria 8885
172 Ga0501033_0025989 3300049570 Bacteria 4406
173 Ga0501034_0046126 3300049571 Bacteria 4403
174 Ga0501036_0064154 3300049572 Bacteria 3109
175 Ga0501038_0001456 3300049574 Bacteria 21753
176 Ga0501039_0033041 3300049575 Bacteria 3991
177 Ga0501043_0017631 3300049579 Bacteria 5599
178 Ga0501046_0009615 3300049580 Bacteria 8338
179 Ga0501047_0017612 3300049581 Bacteria 6845
180 Ga0501048_0025412 3300049582 Bacteria 4316
181 Ga0501068_0022843 3300049584 Bacteria 3662
182 Ga0501069_0000186 3300049585 Bacteria 27883
183 Ga0501070_0009024 3300049586 Bacteria 8436
184 Ga0501073_0017595 3300049589 Bacteria 5176
185 Ga0501074_0002793 3300049590 Bacteria 12217
186 Ga0501080_0001486 3300049742 Bacteria 19779
187 Ga0501083_0010321 3300049744 Bacteria 6578
188 Ga0501035_0019378 3300049822 Bacteria 6258
189 Ga0501044_0045876 3300049823 Bacteria 4526
190 nmdc:mga00v17_27258_c1 3300050491 Bacteria 3335
191 nmdc:mga06z11_174160_c1 3300050494 Bacteria 1237
192 nmdc:mga06z11_22947_c1 3300050494 Bacteria 2924
193 nmdc:mga07m45_21081_c1 3300050496 Bacteria 3545
194 nmdc:mga05p37_13917_c1 3300050507 Bacteria 9642
195 nmdc:mga09592_12256_c1 3300050508 Bacteria 6325
196 nmdc:mga09592_154961_c1 3300050508 Bacteria 1977
197 nmdc:mga0qj67_230698_c1 3300050509 Bacteria 1502
198 nmdc:mga06r32_80506_c1 3300050510 Bacteria 3170
199 nmdc:mga08y16_5370_c1 3300050511 Bacteria 13400
200 nmdc:mga0n895_2134_c1 3300050512 Bacteria 15278
201 nmdc:mga0rr50_5124_c1 3300050513 Bacteria 7780
202 nmdc:mga08x19_33313_c1 3300050514 Bacteria 3251
203 Ga0495595_0116303 3300053084 Bacteria 1300
204 Ga0495619_0168989 3300053085 Bacteria 1512
205 Ga0500646_0000677 3300053090 Bacteria 9751
206 Ga0500583_0009829 3300053092 Bacteria 3519
207 Ga0500616_0006375 3300053153 Bacteria 7738
208 Ga0587077_005301 3300059493 Bacteria 1757
209 Ga0587090_002586 3300059510 Bacteria 2007
210 Ga0587106_002069 3300059605 Bacteria 1913
211 Ga0587128_006674 3300059630 Bacteria 1431
212 Ga0587068_008433 3300059641 Bacteria 1493
213 Ga0587076_009413 3300059645 Bacteria 1388
214 Ga0501082_0029827 3300060353 Bacteria 4698

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300047319 Ga0495674_0139794 Ga0495674_0139794_1101_2024 292
2 3300031995 Ga0307409_100160046 Ga0307409_1001600462 294
3 3300032126 Ga0307415_100019072 Ga0307415_1000190723 294
4 3300026118 Ga0207675_100169942 Ga0207675_1001699422 298
5 3300006048 Ga0075363_100017996 Ga0075363_1000179962 300
6 3300006051 Ga0075364_10031614 Ga0075364_100316143 300
7 3300025940 Ga0207691_10199694 Ga0207691_101996941 300
8 3300050496 nmdc:mga07m45_21081_c1 nmdc:mga07m45_21081_c1_2287_3360 300
9 3300005338 Ga0068868_100170063 Ga0068868_1001700631 302
10 3300005366 Ga0070659_100128353 Ga0070659_1001283532 302
11 3300005719 Ga0068861_100259161 Ga0068861_1002591611 302
12 3300006058 Ga0075432_10000076 Ga0075432_100000768 302
13 3300006844 Ga0075428_100003665 Ga0075428_1000036658 302
14 3300006847 Ga0075431_100149584 Ga0075431_1001495842 302
15 3300006852 Ga0075433_10001214 Ga0075433_100012148 302
16 3300006871 Ga0075434_100000624 Ga0075434_1000006247 302
17 3300006880 Ga0075429_100013889 Ga0075429_1000138892 302
18 3300007076 Ga0075435_100002217 Ga0075435_1000022175 302
19 3300009094 Ga0111539_10009396 Ga0111539_100093965 302
20 3300009147 Ga0114129_10010725 Ga0114129_100107255 302
21 3300009148 Ga0105243_10027404 Ga0105243_100274042 302
22 3300009553 Ga0105249_10139844 Ga0105249_101398442 302
23 3300020069 Ga0197907_10116935 Ga0197907_101169352 302
24 3300020070 Ga0206356_10915364 Ga0206356_109153641 302
25 3300020080 Ga0206350_10433884 Ga0206350_104338843 302
26 3300025927 Ga0207687_10127472 Ga0207687_101274722 302
27 3300027907 Ga0207428_10000246 Ga0207428_1000024645 302
28 3300046538 Ga0495609_0052007 Ga0495609_0052007_507_1583 302
29 3300046692 Ga0495671_0036911 Ga0495671_0036911_1328_2404 302
30 3300050507 nmdc:mga05p37_13917_c1 nmdc:mga05p37_13917_c1_4914_5987 302
31 3300050508 nmdc:mga09592_12256_c1 nmdc:mga09592_12256_c1_4504_5577 302
32 3300050509 nmdc:mga0qj67_230698_c1 nmdc:mga0qj67_230698_c1_144_1217 302
33 3300050510 nmdc:mga06r32_80506_c1 nmdc:mga06r32_80506_c1_1464_2537 302
34 3300050512 nmdc:mga0n895_2134_c1 nmdc:mga0n895_2134_c1_1962_3035 302
35 3300050513 nmdc:mga0rr50_5124_c1 nmdc:mga0rr50_5124_c1_5003_6076 302
36 3300050514 nmdc:mga08x19_33313_c1 nmdc:mga08x19_33313_c1_1311_2384 302
37 3300014326 Ga0157380_10417885 Ga0157380_104178851 306
38 3300046511 Ga0495608_0243212 Ga0495608_0243212_11_1096 307
39 3300025940 Ga0207691_10303017 Ga0207691_103030171 309
40 3300042439 Ga0439464_0000820 Ga0439464_0000820_602_1681 311
41 3300046477 Ga0495664_0109510 Ga0495664_0109510_97_1206 311
42 3300046518 Ga0495631_0028647 Ga0495631_0028647_1277_2350 311
43 3300046543 Ga0495645_0045799 Ga0495645_0045799_1915_3033 311
44 3300046663 Ga0495635_0118002 Ga0495635_0118002_231_1349 311
45 3300047321 Ga0495676_0143559 Ga0495676_0143559_228_1337 311
46 3300053085 Ga0495619_0168989 Ga0495619_0168989_180_1289 311
47 3300059493 Ga0587077_005301 Ga0587077_005301_50_1162 311
48 3300059510 Ga0587090_002586 Ga0587090_002586_845_1957 311
49 3300059645 Ga0587076_009413 Ga0587076_009413_53_1165 311
50 3300005329 Ga0070683_100021034 Ga0070683_1000210342 312
51 3300005334 Ga0068869_100004998 Ga0068869_1000049986 312
52 3300005338 Ga0068868_100010459 Ga0068868_1000104597 312
53 3300005344 Ga0070661_100030211 Ga0070661_1000302113 312
54 3300005354 Ga0070675_100007030 Ga0070675_1000070304 312
55 3300005455 Ga0070663_100001111 Ga0070663_1000011119 312
56 3300005564 Ga0070664_100001559 Ga0070664_10000155914 312
57 3300005578 Ga0068854_100091305 Ga0068854_1000913051 312
58 3300005616 Ga0068852_100005678 Ga0068852_1000056782 312
59 3300005937 Ga0081455_10004660 Ga0081455_1000466011 312
60 3300006048 Ga0075363_100008308 Ga0075363_1000083084 312
61 3300006178 Ga0075367_10001032 Ga0075367_100010325 312
62 3300009177 Ga0105248_10275638 Ga0105248_102756382 312
63 3300014326 Ga0157380_10216184 Ga0157380_102161841 312
64 3300025908 Ga0207643_10031195 Ga0207643_100311953 312
65 3300025920 Ga0207649_10091732 Ga0207649_100917322 312
66 3300025933 Ga0207706_10008235 Ga0207706_100082353 312
67 3300025937 Ga0207669_10111227 Ga0207669_101112271 312
68 3300025945 Ga0207679_10007149 Ga0207679_100071493 312
69 3300025961 Ga0207712_10176046 Ga0207712_101760462 312
70 3300026067 Ga0207678_10001627 Ga0207678_1000162718 312
71 3300026121 Ga0207683_10130838 Ga0207683_101308382 312
72 3300026142 Ga0207698_10030406 Ga0207698_100304063 312
73 3300041453 Ga0451797_0058614 Ga0451797_0058614_31_1008 312
74 3300041459 Ga0451800_0088613 Ga0451800_0088613_99_1076 312
75 3300041491 Ga0451833_1208534 Ga0451833_1208534_264_1241 312
76 3300050494 nmdc:mga06z11_22947_c1 nmdc:mga06z11_22947_c1_454_1527 312
77 3300003373 JGI25407J50210_10001247 JGI25407J50210_100012476 313
78 3300005337 Ga0070682_100005801 Ga0070682_1000058015 313
79 3300005347 Ga0070668_100058340 Ga0070668_1000583403 313
80 3300005356 Ga0070674_100014145 Ga0070674_1000141452 313
81 3300005441 Ga0070700_100037018 Ga0070700_1000370182 313
82 3300005459 Ga0068867_100045294 Ga0068867_1000452942 313
83 3300005615 Ga0070702_100087334 Ga0070702_1000873342 313
84 3300005616 Ga0068852_100077924 Ga0068852_1000779242 313
85 3300005981 Ga0081538_10000147 Ga0081538_1000014720 313
86 3300006881 Ga0068865_100014248 Ga0068865_1000142482 313
87 3300009094 Ga0111539_10002723 Ga0111539_1000272319 313
88 3300009098 Ga0105245_10001764 Ga0105245_1000176413 313
89 3300009098 Ga0105245_10009147 Ga0105245_100091477 313
90 3300009148 Ga0105243_10002777 Ga0105243_100027773 313
91 3300009148 Ga0105243_10043699 Ga0105243_100436992 313
92 3300009176 Ga0105242_10004347 Ga0105242_100043479 313
93 3300009553 Ga0105249_10027634 Ga0105249_100276342 313
94 3300010375 Ga0105239_10301521 Ga0105239_103015212 313
95 3300012487 Ga0157321_1000379 Ga0157321_10003792 313
96 3300013306 Ga0163162_10038643 Ga0163162_100386432 313
97 3300013307 Ga0157372_10008088 Ga0157372_100080885 313
98 3300014745 Ga0157377_10012159 Ga0157377_100121594 313
99 3300025901 Ga0207688_10008640 Ga0207688_100086404 313
100 3300025933 Ga0207706_10005166 Ga0207706_100051667 313
101 3300025934 Ga0207686_10028652 Ga0207686_100286521 313
102 3300025935 Ga0207709_10006736 Ga0207709_100067365 313
103 3300025961 Ga0207712_10048211 Ga0207712_100482111 313
104 3300025972 Ga0207668_10006033 Ga0207668_100060335 313
105 3300025981 Ga0207640_10075857 Ga0207640_100758572 313
106 3300026089 Ga0207648_10019717 Ga0207648_100197175 313
107 3300026142 Ga0207698_10058392 Ga0207698_100583922 313
108 3300050511 nmdc:mga08y16_5370_c1 nmdc:mga08y16_5370_c1_7395_8441 313
109 3300031852 Ga0307410_10002643 Ga0307410_1000264310 314
110 3300031901 Ga0307406_10000033 Ga0307406_1000003355 314
111 3300031903 Ga0307407_10001751 Ga0307407_100017513 314
112 3300031995 Ga0307409_100000041 Ga0307409_10000004113 314
113 3300032002 Ga0307416_100030465 Ga0307416_1000304654 314
114 3300032126 Ga0307415_100001840 Ga0307415_1000018407 314
115 3300041453 Ga0451797_0403560 Ga0451797_0403560_147_1184 314
116 3300048907 Ga0496104_0083698 Ga0496104_0083698_610_1620 315
117 3300005543 Ga0070672_100398770 Ga0070672_1003987701 316
118 3300005844 Ga0068862_100090114 Ga0068862_1000901141 317
119 3300006051 Ga0075364_10032406 Ga0075364_100324063 317
120 3300017792 Ga0163161_10037369 Ga0163161_100373692 317
121 3300020081 Ga0206354_10888305 Ga0206354_108883051 317
122 3300026118 Ga0207675_100070738 Ga0207675_1000707382 317
123 3300031548 Ga0307408_100080143 Ga0307408_1000801432 317
124 3300031731 Ga0307405_10034456 Ga0307405_100344562 317
125 3300031852 Ga0307410_10019209 Ga0307410_100192092 317
126 3300031901 Ga0307406_10012406 Ga0307406_100124063 317
127 3300031903 Ga0307407_10010285 Ga0307407_100102852 317
128 3300031911 Ga0307412_10063103 Ga0307412_100631032 317
129 3300031995 Ga0307409_100020526 Ga0307409_1000205262 317
130 3300032002 Ga0307416_100054956 Ga0307416_1000549562 317
131 3300032004 Ga0307414_10015378 Ga0307414_100153785 317
132 3300032005 Ga0307411_10012072 Ga0307411_100120722 317
133 3300032126 Ga0307415_100019247 Ga0307415_1000192474 317
134 3300042461 Ga0439460_0006826 Ga0439460_0006826_847_1977 317
135 3300050491 nmdc:mga00v17_27258_c1 nmdc:mga00v17_27258_c1_1499_2572 317
136 3300050494 nmdc:mga06z11_174160_c1 nmdc:mga06z11_174160_c1_87_1160 317
137 3300053153 Ga0500616_0006375 Ga0500616_0006375_2120_3199 317
138 3300005334 Ga0068869_100016852 Ga0068869_1000168523 318
139 3300005937 Ga0081455_10018370 Ga0081455_100183706 318
140 3300025942 Ga0207689_10068041 Ga0207689_100680413 318
141 3300028379 Ga0268266_10203748 Ga0268266_102037481 318
142 3300031456 Ga0307513_10001948 Ga0307513_100019483 318
143 3300053092 Ga0500583_0009829 Ga0500583_0009829_641_1720 318
144 3300059630 Ga0587128_006674 Ga0587128_006674_285_1376 318
145 3300005841 Ga0068863_100042867 Ga0068863_1000428674 319
146 3300003575 Ga0007409J51694_1024841 Ga0007409J51694_10248411 320
147 3300005336 Ga0070680_100380395 Ga0070680_1003803951 320
148 3300009098 Ga0105245_10082303 Ga0105245_100823032 320
149 3300013307 Ga0157372_10372105 Ga0157372_103721052 320
150 3300041443 Ga0451789_0629953 Ga0451789_0629953_1769_2962 320
151 3300048911 Ga0496108_0361947 Ga0496108_0361947_46_1215 320
152 3300048917 Ga0496114_0333307 Ga0496114_0333307_24_1193 320
153 3300053084 Ga0495595_0116303 Ga0495595_0116303_100_1218 320
154 3300003203 JGI25406J46586_10008174 JGI25406J46586_100081742 321
155 3300005337 Ga0070682_100030148 Ga0070682_1000301482 321
156 3300005456 Ga0070678_100046029 Ga0070678_1000460291 321
157 3300005985 Ga0081539_10000194 Ga0081539_100001949 321
158 3300013296 Ga0157374_10107919 Ga0157374_101079192 321
159 3300025901 Ga0207688_10053413 Ga0207688_100534132 321
160 3300026121 Ga0207683_10021280 Ga0207683_100212804 321
161 3300041452 Ga0451793_0407050 Ga0451793_0407050_798_1991 321
162 3300041452 Ga0451793_0518084 Ga0451793_0518084_345_1451 321
163 3300041512 Ga0451853_1134849 Ga0451853_1134849_2449_3642 321
164 3300031649 Ga0307514_10002953 Ga0307514_1000295317 322
165 3300046460 Ga0495638_0062146 Ga0495638_0062146_1117_2217 323
166 3300059605 Ga0587106_002069 Ga0587106_002069_752_1864 323
167 3300059641 Ga0587068_008433 Ga0587068_008433_339_1451 323
168 3300053090 Ga0500646_0000677 Ga0500646_0000677_4581_5750 325
169 3300042146 Ga0450907_005949 Ga0450907_005949_150_1226 326
170 3300041512 Ga0451853_3261180 Ga0451853_3261180_1119_2231 329
171 3300048917 Ga0496114_0004761 Ga0496114_0004761_8227_9426 330
172 3300032126 Ga0307415_100030297 Ga0307415_1000302973 331
173 3300042126 Ga0450888_001129 Ga0450888_001129_339_1463 331
174 3300030522 Ga0307512_10135116 Ga0307512_101351162 332
175 3300037418 Ga0395900_0040475 Ga0395900_0040475_1629_2747 332
176 3300037466 Ga0395898_0031402 Ga0395898_0031402_449_1567 332
177 3300037471 Ga0395905_0016925 Ga0395905_0016925_141_1220 332
178 3300038443 Ga0395901_0020542 Ga0395901_0020542_2535_3653 332
179 iso_pu_bacteria 2508501039 2508672416 332
180 iso_pu_bacteria 2687453737 2689959552 332
181 3300005937 Ga0081455_10027308 Ga0081455_100273083 333
182 3300005468 Ga0070707_100327629 Ga0070707_1003276291 335
183 3300005471 Ga0070698_100026399 Ga0070698_1000263992 335
184 3300025922 Ga0207646_10242942 Ga0207646_102429421 335
185 3300031665 Ga0316575_10028963 Ga0316575_100289631 335
186 3300031727 Ga0316576_10073312 Ga0316576_100733121 335
187 3300031728 Ga0316578_10077140 Ga0316578_100771402 335
188 3300032133 Ga0316583_10014053 Ga0316583_100140532 335
189 3300035398 Ga0316574_0039207 Ga0316574_0039207_1249_2364 335
190 3300036647 Ga0316582_0015613 Ga0316582_0015613_250_1365 335
191 3300036712 Ga0316584_0001530 Ga0316584_0001530_8488_9603 335
192 3300044683 Ga0466965_0007799 Ga0466965_0007799_157_1257 335
193 iso_pu_bacteria 2643221549 2643767044 335
194 iso_pu_bacteria 2643221649 2644279494 335
195 iso_pu_bacteria 2643221961 2645720325 335
196 iso_pu_bacteria 2643221962 2645723265 335
197 iso_pu_bacteria 2808606700 2810364998 335
198 iso_pu_bacteria 2905926851 2905930506 335
199 iso_pu_bacteria 8055412473 8055417202 335
200 iso_pu_bacteria 2582581316 2585336378 336
201 iso_pu_bacteria 2643221572 2643877476 336
202 iso_pu_bacteria 2643221669 2644384531 336
203 iso_pu_bacteria 2808606372 2808899778 336
204 iso_pu_bacteria 2895660088 2895661708 336
205 iso_pu_bacteria 2902582711 2902583091 336
206 iso_pu_bacteria 2966921586 2966921612 336
207 iso_pu_bacteria 2891373044 2891375425 337
208 3300002774 JGI25150J39212_1000026 JGI25150J39212_100002652 340
209 3300048929 Ga0496126_0046754 Ga0496126_0046754_2838_3860 340
210 3300049568 Ga0501031_0041328 Ga0501031_0041328_1924_2949 340
211 3300049569 Ga0501032_0006089 Ga0501032_0006089_2818_3843 340
212 3300049570 Ga0501033_0025989 Ga0501033_0025989_3029_4054 340
213 3300049571 Ga0501034_0046126 Ga0501034_0046126_778_1803 340
214 3300049572 Ga0501036_0064154 Ga0501036_0064154_451_1476 340
215 3300049574 Ga0501038_0001456 Ga0501038_0001456_14671_15696 340
216 3300049575 Ga0501039_0033041 Ga0501039_0033041_17_1042 340
217 3300049579 Ga0501043_0017631 Ga0501043_0017631_2378_3403 340
218 3300049580 Ga0501046_0009615 Ga0501046_0009615_977_2002 340
219 3300049581 Ga0501047_0017612 Ga0501047_0017612_5043_6068 340
220 3300049582 Ga0501048_0025412 Ga0501048_0025412_1187_2212 340
221 3300049584 Ga0501068_0022843 Ga0501068_0022843_1009_2034 340
222 3300049585 Ga0501069_0000186 Ga0501069_0000186_26062_27087 340
223 3300049586 Ga0501070_0009024 Ga0501070_0009024_6037_7062 340
224 3300049589 Ga0501073_0017595 Ga0501073_0017595_261_1286 340
225 3300049590 Ga0501074_0002793 Ga0501074_0002793_6037_7062 340
226 3300049742 Ga0501080_0001486 Ga0501080_0001486_1440_2465 340
227 3300049744 Ga0501083_0010321 Ga0501083_0010321_696_1721 340
228 3300049822 Ga0501035_0019378 Ga0501035_0019378_4128_5153 340
229 3300049823 Ga0501044_0045876 Ga0501044_0045876_1158_2183 340
230 3300050508 nmdc:mga09592_154961_c1 nmdc:mga09592_154961_c1_269_1396 340
231 3300060353 Ga0501082_0029827 Ga0501082_0029827_1773_2798 340

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13407

Peripla_BP_4

Periplasmic binding protein domain

60

337

0.88

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

57

211

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
7pu4-assembly2.cif.gz_C crystal structure of the dimer rbp-n and rbp-trunc from thermotoga maritima ribose binding protein 0.9383 28 148
7qsq-assembly2.cif.gz_B permutated n-terminal lobe of the ribose binding protein from thermotoga maritima 0.9307 26 117
7pu4-assembly2.cif.gz_C crystal structure of the dimer rbp-n and rbp-trunc from thermotoga maritima ribose binding protein 0.9024 28 148
2fn9-assembly2.cif.gz_B thermotoga maritima ribose binding protein unliganded form 0.89 28 321
4zjp-assembly1.cif.gz_A structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose 0.8841 26 320
ID Description Score Start End Superfamily
af_P76142_29_128_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9532 29 128 3.40.50.2300
5ibqA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9444 26 131 3.40.50.2300
af_P37387_24_127_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9414 25 130 3.40.50.2300
af_P02925_28_128_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9381 29 116 3.40.50.2300
2qvcB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.935 27 131 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A357X3J4-F1-model_v4 deleted 0.936 210 340
AF-A0A536UNS8-F1-model_v4 Sugar ABC transporter substrate-binding protein 0.9319 81 340 GO:0030246
GO:0030313
AF-A0A1H8ALF0-F1-model_v4 deleted 0.9283 182 340
AF-A0A6N8Z8P2-F1-model_v4 Sugar ABC transporter substrate-binding protein 0.9265 217 340 GO:0030246
GO:0030313
AF-A0A357X3J4-F1-model_v4 deleted 0.9226 210 340

Feature Viewer

pLDDT pTM Quality
89.6 0.85 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map