F344652

General Info

Members Datasets Scaffolds Average Seq Length
232 159 464 300

Family's Representative Sequence

Representative Sequence 3300003316|rootH1_10098470|rootH1_100984703
Length 332
Sequence MTSPSVPRIVVVGSVNTDLVLRVPHLPAAGETVAGSGLLTLAGGKGANQAVAAARQGAAVHFVGAVGSDDFGSRQRQNLSREGIDITHLATVDGLETGTAMIAIDAQGQNMILLSAGANGSVSSDQVEAARTAIESADILLCQLETPLPAVQRAIDIAHAKGVPVMLNPAPARPLEPALLSKVDFLLPNETEASLLTGLPVAPGHAEQANLAAQALRAAGARCVLVTLGAQGVLVAQGQATSLEPAMSVPVVDTTGAGDTFVGCLAVGIAQRRALADAVHEAQCAAALKVTRLGAQAAIPRRDEVRDFMEAASPRAASPPGAGSSGQDVRRP

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
8 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
9 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
10 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
11 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
12 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
13 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
14 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
15 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
16 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
17 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
18 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
19 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
20 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
21 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
22 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
23 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
24 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
25 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
26 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
27 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
28 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
29 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
30 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
31 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
32 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
33 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
34 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
35 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
36 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
37 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
38 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
39 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
40 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
41 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
42 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
43 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
44 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
45 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
47 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
48 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
49 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
50 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
51 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
52 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
53 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
54 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
55 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
56 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
57 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
58 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
59 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
60 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
61 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
62 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
63 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
64 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
65 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
66 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
67 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
70 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
72 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
76 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
78 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
105 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
107 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
108 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
109 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
110 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
111 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
112 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
113 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
114 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
115 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
116 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
117 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
118 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
119 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
120 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
121 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
122 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
123 3300042121 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515D_E14_082716_2398 Metagenome Rhizosphere
124 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
125 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
126 3300044660 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3E1 Metagenome Unclassified
127 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
128 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
129 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
130 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
131 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
132 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
133 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
134 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
135 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
136 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
137 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
138 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
139 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
140 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
141 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
142 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
143 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
144 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
145 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
146 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
147 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
148 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
149 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
150 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
151 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
152 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
153 2585428057 Methylibium sp. YR605 Isolate Rhizosphere
154 2585428058 Methylibium sp. CF468 Isolate Rhizosphere
155 2588253510 Rhizobacter sp. OV335 Isolate Rhizosphere
156 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
157 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
158 2643221644 Rhizobacter sp. Root1221 Isolate Unclassified
159 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.98
Metatranscriptomes 0
Isolates 3.02

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.52
Nodule 0.86
Rhizoplane 1.72
Rhizosphere 75.43
Stem 0
Stem Tuber 0
Unclassified 6.03

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10098470 3300003316 Bacteria 2930
2 JGI25152J39213_1000787 3300002773 Bacteria 15889
3 JGI25153J46596_10001723 3300003215 Bacteria 12965
4 JGI25153J46596_10002668 3300003215 Bacteria 10190
5 rootH1_10077798 3300003316 Bacteria 3884
6 rootH2_10142524 3300003320 Bacteria 2080
7 rootL2_10003512 3300003322 Bacteria 14306
8 rootL2_10031797 3300003322 Bacteria 5598
9 rootL2_10052139 3300003322 Bacteria 2409
10 rootH1_10088515 3300003323 Bacteria 5029
11 Ga0055539_1000116 3300003752 Bacteria 88977
12 Ga0055533_1000016 3300003756 Bacteria 396179
13 Ga0055525_1001258 3300003759 Bacteria 5363
14 Ga0055526_1000042 3300003771 Bacteria 124886
15 Ga0055526_1002727 3300003771 Bacteria 11738
16 Ga0055524_1000084 3300003775 Bacteria 119107
17 Ga0055524_1000094 3300003775 Bacteria 110394
18 Ga0055530_10007319 3300003791 Bacteria 4679
19 Ga0055540_1000004 3300003792 Bacteria 395545
20 Ga0065165_1003049 3300005262 Bacteria 12570
21 Ga0070658_10040773 3300005327 Bacteria 3746
22 Ga0070683_100418307 3300005329 Bacteria 1278
23 Ga0070666_10235875 3300005335 Bacteria 1293
24 Ga0068868_100039453 3300005338 Unclassified 3669
25 Ga0070660_100073230 3300005339 Bacteria 2678
26 Ga0070660_100122071 3300005339 Bacteria 2080
27 Ga0070689_100037933 3300005340 Bacteria 3685
28 Ga0070689_100047773 3300005340 Bacteria 3300
29 Ga0070689_100362476 3300005340 Bacteria 1218
30 Ga0070661_100099556 3300005344 Bacteria 2160
31 Ga0070675_100241295 3300005354 Bacteria 1579
32 Ga0070673_100346184 3300005364 Bacteria 1318
33 Ga0070688_100171562 3300005365 Bacteria 1497
34 Ga0070667_100401168 3300005367 Bacteria 1248
35 Ga0070714_100218592 3300005435 Bacteria 1750
36 Ga0070713_100113448 3300005436 Bacteria 2366
37 Ga0070713_100694349 3300005436 Unclassified 971
38 Ga0070663_100214642 3300005455 Bacteria 1508
39 Ga0070662_100002472 3300005457 Bacteria 11382
40 Ga0070681_10012358 3300005458 Bacteria 8466
41 Ga0068867_100000223 3300005459 Bacteria 37387
42 Ga0070685_10007687 3300005466 Bacteria 5517
43 Ga0070679_100001866 3300005530 Bacteria 18950
44 Ga0070679_100162920 3300005530 Bacteria 2204
45 Ga0070679_100274309 3300005530 Bacteria 1640
46 Ga0070684_100045965 3300005535 Bacteria 3782
47 Ga0068853_100219581 3300005539 Bacteria 1736
48 Ga0070672_100010949 3300005543 Bacteria 6310
49 Ga0068855_100090787 3300005563 Bacteria 3524
50 Ga0068855_100144067 3300005563 Bacteria 2714
51 Ga0070664_100187726 3300005564 Bacteria 1840
52 Ga0068856_100009381 3300005614 Bacteria 9505
53 Ga0068856_100012076 3300005614 Bacteria 8365
54 Ga0068856_100511508 3300005614 Unclassified 1222
55 Ga0068863_100026814 3300005841 Bacteria 5495
56 Ga0068863_100088751 3300005841 Bacteria 2931
57 Ga0068858_100047177 3300005842 Bacteria 3994
58 Ga0068858_100151007 3300005842 Bacteria 2184
59 Ga0068858_100176156 3300005842 Bacteria 2018
60 Ga0081539_10001220 3300005985 Bacteria 45919
61 Ga0070717_10214771 3300006028 Unclassified 1689
62 Ga0075363_100244069 3300006048 Bacteria 1033
63 Ga0097621_100110316 3300006237 Bacteria 2324
64 Ga0075370_10139942 3300006353 Bacteria 1414
65 Ga0075428_100000289 3300006844 Bacteria 49296
66 Ga0075428_100069477 3300006844 Bacteria 3851
67 Ga0075430_100021464 3300006846 Bacteria 5489
68 Ga0075430_100328200 3300006846 Bacteria 1264
69 Ga0075431_100107256 3300006847 Bacteria 2882
70 Ga0075431_100389756 3300006847 Bacteria 1396
71 Ga0075431_100390891 3300006847 Bacteria 1393
72 Ga0075429_100020736 3300006880 Bacteria 5705
73 Ga0075429_100036118 3300006880 Bacteria 4297
74 Ga0079104_1000013 3300006946 Bacteria 349477
75 Ga0105240_10029413 3300009093 Bacteria 7158
76 Ga0105245_10073946 3300009098 Bacteria 3100
77 Ga0114129_10047428 3300009147 Bacteria 6036
78 Ga0114129_10131249 3300009147 Bacteria 3440
79 Ga0114129_10739492 3300009147 Unclassified 1260
80 Ga0105243_10018586 3300009148 Bacteria 5267
81 Ga0105243_10048028 3300009148 Bacteria 3363
82 Ga0105237_10079445 3300009545 Bacteria 3270
83 Ga0105238_10005351 3300009551 Bacteria 12681
84 Ga0105239_10342116 3300010375 Bacteria 1688
85 Ga0157373_10031830 3300013100 Bacteria 3798
86 Ga0157371_10021312 3300013102 Bacteria 4759
87 Ga0157370_10082134 3300013104 Bacteria 3031
88 Ga0163162_10736978 3300013306 Bacteria 1105
89 Ga0163162_10810819 3300013306 Bacteria 1053
90 Ga0157372_10013529 3300013307 Bacteria 8719
91 Ga0157372_10184958 3300013307 Bacteria 2413
92 Ga0157375_10095316 3300013308 Bacteria 3046
93 Ga0157375_10153131 3300013308 Bacteria 2443
94 Ga0157375_10977221 3300013308 Bacteria 987
95 Ga0157377_10000029 3300014745 Bacteria 134270
96 Ga0157377_10011698 3300014745 Bacteria 4388
97 Ga0163161_10031827 3300017792 Bacteria 3762
98 Ga0209674_100041 3300025226 Bacteria 396231
99 Ga0209563_100043 3300025230 Bacteria 397271
100 Ga0207425_1000463 3300025245 Bacteria 25992
101 Ga0209677_100077 3300025253 Bacteria 126245
102 Ga0209129_1000122 3300025258 Bacteria 135306
103 Ga0209565_1006092 3300025263 Bacteria 3424
104 Ga0209565_1016557 3300025263 Bacteria 1637
105 Ga0209673_1010209 3300025273 Bacteria 3978
106 Ga0209564_1000032 3300025295 Bacteria 464041
107 Ga0209564_1002119 3300025295 Bacteria 16835
108 Ga0209758_1000091 3300025297 Bacteria 242583
109 Ga0209758_1000350 3300025297 Bacteria 84141
110 Ga0209050_1000507 3300025298 Bacteria 66169
111 Ga0209050_1000966 3300025298 Bacteria 37051
112 Ga0209256_1000071 3300025299 Bacteria 242618
113 Ga0209051_1000016 3300025303 Bacteria 541891
114 Ga0209257_1000115 3300025304 Bacteria 230858
115 Ga0207643_10011654 3300025908 Bacteria 4748
116 Ga0207705_10015425 3300025909 Bacteria 5483
117 Ga0207660_10005684 3300025917 Bacteria 8090
118 Ga0207657_10012752 3300025919 Bacteria 8277
119 Ga0207657_10023759 3300025919 Bacteria 5700
120 Ga0207652_10001057 3300025921 Bacteria 25055
121 Ga0207694_10012505 3300025924 Bacteria 6400
122 Ga0207659_10057444 3300025926 Bacteria 2790
123 Ga0207664_10368415 3300025929 Bacteria 1274
124 Ga0207644_10141707 3300025931 Bacteria 1852
125 Ga0207706_10092009 3300025933 Bacteria 2666
126 Ga0207709_10004807 3300025935 Bacteria 7740
127 Ga0207670_10001978 3300025936 Bacteria 10738
128 Ga0207670_10078203 3300025936 Bacteria 2307
129 Ga0207704_10172220 3300025938 Bacteria 1554
130 Ga0207704_10208663 3300025938 Bacteria 1436
131 Ga0207711_10057707 3300025941 Bacteria 3337
132 Ga0207689_10148939 3300025942 Bacteria 1929
133 Ga0207689_10165628 3300025942 Bacteria 1821
134 Ga0207667_10000256 3300025949 Bacteria 74992
135 Ga0207667_10391356 3300025949 Bacteria 1415
136 Ga0207677_10067027 3300026023 Bacteria 2513
137 Ga0207703_10016520 3300026035 Bacteria 5755
138 Ga0207703_10066763 3300026035 Bacteria 2960
139 Ga0207678_10334411 3300026067 Bacteria 1304
140 Ga0207708_10007764 3300026075 Bacteria 7944
141 Ga0207702_10039345 3300026078 Bacteria 3961
142 Ga0207702_10110984 3300026078 Bacteria 2438
143 Ga0207702_10162283 3300026078 Bacteria 2042
144 Ga0207702_10537351 3300026078 Unclassified 1142
145 Ga0207648_10000704 3300026089 Bacteria 37513
146 Ga0207648_10034118 3300026089 Bacteria 4487
147 Ga0207674_10032264 3300026116 Bacteria 5496
148 Ga0207683_10094244 3300026121 Bacteria 2668
149 Ga0207683_10145264 3300026121 Bacteria 2139
150 Ga0209281_1000196 3300027111 Bacteria 137908
151 Ga0268265_10371865 3300028380 Unclassified 1312
152 Ga0265336_10010572 3300028666 Bacteria 3160
153 Ga0307515_10012294 3300028794 Bacteria 16112
154 Ga0265338_10001927 3300028800 Bacteria 32375
155 Ga0265338_10005469 3300028800 Bacteria 16579
156 Ga0265338_10005996 3300028800 Bacteria 15633
157 Ga0265338_10060749 3300028800 Bacteria 3317
158 Ga0265330_10000907 3300031235 Bacteria 18284
159 Ga0265330_10090387 3300031235 Unclassified 1315
160 Ga0265328_10015767 3300031239 Bacteria 2955
161 Ga0265320_10025445 3300031240 Bacteria 3110
162 Ga0265325_10000123 3300031241 Bacteria 53074
163 Ga0265325_10000189 3300031241 Bacteria 43738
164 Ga0265325_10019938 3300031241 Unclassified 3700
165 Ga0265329_10010834 3300031242 Unclassified 3334
166 Ga0265340_10008303 3300031247 Bacteria 5612
167 Ga0265340_10030014 3300031247 Unclassified 2727
168 Ga0265339_10000040 3300031249 Bacteria 120556
169 Ga0265339_10000214 3300031249 Bacteria 47430
170 Ga0265339_10000409 3300031249 Bacteria 33837
171 Ga0265339_10005224 3300031249 Bacteria 8687
172 Ga0265339_10038352 3300031249 Plasmid 2674
173 Ga0265316_10006303 3300031344 Bacteria 11357
174 Ga0265316_10018893 3300031344 Bacteria 5916
175 Ga0265316_10019943 3300031344 Bacteria 5719
176 Ga0265316_10020360 3300031344 Bacteria 5648
177 Ga0265316_10027688 3300031344 Bacteria 4687
178 Ga0307513_10310083 3300031456 Bacteria 1341
179 Ga0265313_10001854 3300031595 Bacteria 19251
180 Ga0265313_10005995 3300031595 Bacteria 8783
181 Ga0265313_10045449 3300031595 Unclassified 2138
182 Ga0265313_10103059 3300031595 Unclassified 1264
183 Ga0265314_10000036 3300031711 Bacteria 234928
184 Ga0265314_10019909 3300031711 Bacteria 5189
185 Ga0265314_10026750 3300031711 Bacteria 4330
186 Ga0265342_10000974 3300031712 Bacteria 28418
187 Ga0265342_10000979 3300031712 Bacteria 28284
188 Ga0265342_10006533 3300031712 Bacteria 8677
189 Ga0265342_10052626 3300031712 Bacteria 2426
190 Ga0265342_10064540 3300031712 Bacteria 2148
191 Ga0395901_0782131 3300038443 Bacteria 945
192 Ga0436363_1596906 3300039450 Bacteria 2158
193 Ga0450919_001872 3300042121 Bacteria 2732
194 Ga0450918_011823 3300042531 Bacteria 1520
195 Ga0466972_0000106 3300044658 Bacteria 72246
196 Ga0466974_0023275 3300044660 Eukaryota 3954
197 Ga0451576_0606840 3300045051 Bacteria 1150
198 Ga0495592_0136555 3300046454 Eukaryota 1710
199 Ga0495629_0129294 3300046459 Bacteria 1759
200 Ga0495651_0013532 3300046462 Eukaryota 6310
201 Ga0495610_0019294 3300046512 Bacteria 3822
202 Ga0495632_0000979 3300046519 Bacteria 24960
203 Ga0495652_0155226 3300046529 Eukaryota 1783
204 Ga0495587_0024820 3300046536 Bacteria 3670
205 Ga0495645_0071909 3300046543 Bacteria 2493
206 Ga0495661_0008202 3300046665 Eukaryota 7235
207 Ga0495600_0190228 3300046809 Eukaryota 1320
208 Ga0495581_0274322 3300047315 Bacteria 986
209 Ga0495674_0063276 3300047319 Bacteria 3219
210 Ga0495687_000258 3300047443 Bacteria 71365
211 Ga0495684_0201946 3300047471 Bacteria 1465
212 Ga0496104_0030556 3300048907 Bacteria 5007
213 Ga0496104_0579284 3300048907 Unclassified 1033
214 Ga0496107_0005352 3300048910 Eukaryota 8779
215 Ga0496114_0013346 3300048917 Bacteria 6586
216 nmdc:mga07m45_54566_c1 3300050496 Bacteria 2258
217 nmdc:mga05p37_107467_c1 3300050507 Bacteria 3433
218 nmdc:mga09592_400749_c1 3300050508 Bacteria 1186
219 nmdc:mga0qj67_27741_c1 3300050509 Bacteria 4391
220 nmdc:mga06r32_162628_c1 3300050510 Bacteria 2214
221 nmdc:mga06r32_239093_c1 3300050510 Bacteria 1804
222 nmdc:mga06r32_535658_c1 3300050510 Bacteria 1146
223 Ga0500578_0000013 3300053086 Bacteria 185921
224 Ga0500568_0009496 3300053139 Bacteria 4613
225 Ga0500600_0032500 3300053149 Eukaryota 3057
226 2587729700 2585428057 Bacteria 6737412
227 2587734150 2585428058 Bacteria 6853932
228 2588293421 2588253510 Bacteria 6901809
229 2643970149 2643221592 Bacteria 6608788
230 2644141184 2643221625 Bacteria 6512927
231 2644246190 2643221644 Bacteria 6865017
232 2644274203 2643221648 Bacteria 6521465
233 rootH1_10098470
234 JGI25152J39213_1000787
235 JGI25153J46596_10001723
236 JGI25153J46596_10002668
237 rootH1_10077798
238 rootH2_10142524
239 rootL2_10003512
240 rootL2_10031797
241 rootL2_10052139
242 rootH1_10088515
243 Ga0055539_1000116
244 Ga0055533_1000016
245 Ga0055525_1001258
246 Ga0055526_1000042
247 Ga0055526_1002727
248 Ga0055524_1000084
249 Ga0055524_1000094
250 Ga0055530_10007319
251 Ga0055540_1000004
252 Ga0065165_1003049
253 Ga0070658_10040773
254 Ga0070683_100418307
255 Ga0070666_10235875
256 Ga0068868_100039453
257 Ga0070660_100073230
258 Ga0070660_100122071
259 Ga0070689_100037933
260 Ga0070689_100047773
261 Ga0070689_100362476
262 Ga0070661_100099556
263 Ga0070675_100241295
264 Ga0070673_100346184
265 Ga0070688_100171562
266 Ga0070667_100401168
267 Ga0070714_100218592
268 Ga0070713_100113448
269 Ga0070713_100694349
270 Ga0070663_100214642
271 Ga0070662_100002472
272 Ga0070681_10012358
273 Ga0068867_100000223
274 Ga0070685_10007687
275 Ga0070679_100001866
276 Ga0070679_100162920
277 Ga0070679_100274309
278 Ga0070684_100045965
279 Ga0068853_100219581
280 Ga0070672_100010949
281 Ga0068855_100090787
282 Ga0068855_100144067
283 Ga0070664_100187726
284 Ga0068856_100009381
285 Ga0068856_100012076
286 Ga0068856_100511508
287 Ga0068863_100026814
288 Ga0068863_100088751
289 Ga0068858_100047177
290 Ga0068858_100151007
291 Ga0068858_100176156
292 Ga0081539_10001220
293 Ga0070717_10214771
294 Ga0075363_100244069
295 Ga0097621_100110316
296 Ga0075370_10139942
297 Ga0075428_100000289
298 Ga0075428_100069477
299 Ga0075430_100021464
300 Ga0075430_100328200
301 Ga0075431_100107256
302 Ga0075431_100389756
303 Ga0075431_100390891
304 Ga0075429_100020736
305 Ga0075429_100036118
306 Ga0079104_1000013
307 Ga0105240_10029413
308 Ga0105245_10073946
309 Ga0114129_10047428
310 Ga0114129_10131249
311 Ga0114129_10739492
312 Ga0105243_10018586
313 Ga0105243_10048028
314 Ga0105237_10079445
315 Ga0105238_10005351
316 Ga0105239_10342116
317 Ga0157373_10031830
318 Ga0157371_10021312
319 Ga0157370_10082134
320 Ga0163162_10736978
321 Ga0163162_10810819
322 Ga0157372_10013529
323 Ga0157372_10184958
324 Ga0157375_10095316
325 Ga0157375_10153131
326 Ga0157375_10977221
327 Ga0157377_10000029
328 Ga0157377_10011698
329 Ga0163161_10031827
330 Ga0209674_100041
331 Ga0209563_100043
332 Ga0207425_1000463
333 Ga0209677_100077
334 Ga0209129_1000122
335 Ga0209565_1006092
336 Ga0209565_1016557
337 Ga0209673_1010209
338 Ga0209564_1000032
339 Ga0209564_1002119
340 Ga0209758_1000091
341 Ga0209758_1000350
342 Ga0209050_1000507
343 Ga0209050_1000966
344 Ga0209256_1000071
345 Ga0209051_1000016
346 Ga0209257_1000115
347 Ga0207643_10011654
348 Ga0207705_10015425
349 Ga0207660_10005684
350 Ga0207657_10012752
351 Ga0207657_10023759
352 Ga0207652_10001057
353 Ga0207694_10012505
354 Ga0207659_10057444
355 Ga0207664_10368415
356 Ga0207644_10141707
357 Ga0207706_10092009
358 Ga0207709_10004807
359 Ga0207670_10001978
360 Ga0207670_10078203
361 Ga0207704_10172220
362 Ga0207704_10208663
363 Ga0207711_10057707
364 Ga0207689_10148939
365 Ga0207689_10165628
366 Ga0207667_10000256
367 Ga0207667_10391356
368 Ga0207677_10067027
369 Ga0207703_10016520
370 Ga0207703_10066763
371 Ga0207678_10334411
372 Ga0207708_10007764
373 Ga0207702_10039345
374 Ga0207702_10110984
375 Ga0207702_10162283
376 Ga0207702_10537351
377 Ga0207648_10000704
378 Ga0207648_10034118
379 Ga0207674_10032264
380 Ga0207683_10094244
381 Ga0207683_10145264
382 Ga0209281_1000196
383 Ga0268265_10371865
384 Ga0265336_10010572
385 Ga0307515_10012294
386 Ga0265338_10001927
387 Ga0265338_10005469
388 Ga0265338_10005996
389 Ga0265338_10060749
390 Ga0265330_10000907
391 Ga0265330_10090387
392 Ga0265328_10015767
393 Ga0265320_10025445
394 Ga0265325_10000123
395 Ga0265325_10000189
396 Ga0265325_10019938
397 Ga0265329_10010834
398 Ga0265340_10008303
399 Ga0265340_10030014
400 Ga0265339_10000040
401 Ga0265339_10000214
402 Ga0265339_10000409
403 Ga0265339_10005224
404 Ga0265339_10038352
405 Ga0265316_10006303
406 Ga0265316_10018893
407 Ga0265316_10019943
408 Ga0265316_10020360
409 Ga0265316_10027688
410 Ga0307513_10310083
411 Ga0265313_10001854
412 Ga0265313_10005995
413 Ga0265313_10045449
414 Ga0265313_10103059
415 Ga0265314_10000036
416 Ga0265314_10019909
417 Ga0265314_10026750
418 Ga0265342_10000974
419 Ga0265342_10000979
420 Ga0265342_10006533
421 Ga0265342_10052626
422 Ga0265342_10064540
423 Ga0395901_0782131
424 Ga0436363_1596906
425 Ga0450919_001872
426 Ga0450918_011823
427 Ga0466972_0000106
428 Ga0466974_0023275
429 Ga0451576_0606840
430 Ga0495592_0136555
431 Ga0495629_0129294
432 Ga0495651_0013532
433 Ga0495610_0019294
434 Ga0495632_0000979
435 Ga0495652_0155226
436 Ga0495587_0024820
437 Ga0495645_0071909
438 Ga0495661_0008202
439 Ga0495600_0190228
440 Ga0495581_0274322
441 Ga0495674_0063276
442 Ga0495687_000258
443 Ga0495684_0201946
444 Ga0496104_0030556
445 Ga0496104_0579284
446 Ga0496107_0005352
447 Ga0496114_0013346
448 nmdc:mga07m45_54566_c1
449 nmdc:mga05p37_107467_c1
450 nmdc:mga09592_400749_c1
451 nmdc:mga0qj67_27741_c1
452 nmdc:mga06r32_162628_c1
453 nmdc:mga06r32_239093_c1
454 nmdc:mga06r32_535658_c1
455 Ga0500578_0000013
456 Ga0500568_0009496
457 Ga0500600_0032500
458 2587729700
459 2587734150
460 2588293421
461 2643970149
462 2644141184
463 2644246190
464 2644274203

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00294

PfkB

pfkB family carbohydrate kinase

6

302

0.96

PF08543

Phos_pyr_kin

Phosphomethylpyrimidine kinase

156

295

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
1rk2-assembly2.cif.gz_C e. coli ribokinase complexed with ribose and adp, solved in space group p212121 0.9755 5 294
4xda-assembly1.cif.gz_A vibrio cholerae o395 ribokinase complexed with ribose, adp and sodium ion. 0.9715 1 294
6znx-assembly1.cif.gz_A ribokinase from thermus species 0.9518 5 294
4xda-assembly1.cif.gz_A vibrio cholerae o395 ribokinase complexed with ribose, adp and sodium ion. 0.9492 1 294
1rk2-assembly2.cif.gz_C e. coli ribokinase complexed with ribose and adp, solved in space group p212121 0.9404 5 294
ID Description Score Start End Superfamily
af_Q19133_1_311_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9276 2 292 3.40.1190.20
af_Q9H477_1_322_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.927 5 295 3.40.1190.20
af_Q9VK96_1_314_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9244 5 293 3.40.1190.20
4x8fD00 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9199 4 294 3.40.1190.20
af_O60116_1_317_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.917 4 294 3.40.1190.20
ID Description Score Start End GO Terms
AF-A0A800K789-F1-model_v4 Ribokinase (EC 2.7.1.15) 0.973 198 293 GO:0004747
GO:0005829
AF-A0A3E2CIP9-F1-model_v4 deleted 0.9706 59 294
AF-A0A6P0WMR4-F1-model_v4 Ribokinase 0.9692 5 88 GO:0006796
GO:0016301
AF-A0A523AR12-F1-model_v4 Carbohydrate kinase PfkB domain-containing protein 0.9671 98 294 GO:0006796
GO:0016301
AF-A0A2W6VSC4-F1-model_v4 deleted 0.9625 159 291

Map