F345515

General Info

Members Datasets Scaffolds Average Seq Length
232 175 207 314

Family's Representative Sequence

Representative Sequence 3300049586|Ga0501070_0180431|Ga0501070_0180431_497_1561
Length 354
Sequence VSPSDLPTTDPSYTAEISRVAALGGGLIGRSWTALFLAAGKSVSVYDPDPAAEARVRDGVEAAWPVLTSLGLANGSAPAAELTFCHDAREAVDGAQFVQESVPERVDLKHALYADIEPILDENAVVASSASGLTLSELQAGWTRPGRLVLGHPFNPPHLIPLVEVMGNHRTDAGVVDSARRFYESIGKVTIEVRREVPGHVANRLQAAMWREAIHLVEEGVATVHDVDVAVSSGPGLRWAVMGPTQLFHLGGDDGGIAAFCQRYADSFHRWWDDLGQPRLDGPTVDHLVEGMAQCVGSETPDDLAAKRDALLTAVVAATHPRQSRTPRSAATTPERPYLTPQSQDGQGPVAPLV

Samples

Sample ID Description Type Environment
1 2511231026 Herbaspirillum sp. YR522 Isolate Rhizosphere
2 2521172590 Herbaspirillum sp. GW103 Isolate Rhizosphere
3 2551306416 Herbaspirillum seropedicae Os34 Isolate Unclassified
4 2643221603 Noviherbaspirillum sp. Root189 Isolate Unclassified
5 2728368998 Bradyrhizobium macuxiense BR 10303 Isolate Nodule
6 2765235838 Herbaspirillum robiniae AA6 Isolate Unclassified
7 2808606386 Herbaspirillum sp. SJZ099 Isolate Rhizosphere
8 2808606415 Herbaspirillum sp. SJZ130 Isolate Rhizosphere
9 2808606419 Herbaspirillum sp. SJZ106 Isolate Rhizosphere
10 2818991449 Herbaspirillum huttiense 1147 Isolate Unclassified
11 2839094727 Herbaspirillum robiniae HZ10 Isolate Nodule
12 2852618963 Herbaspirillum sp. SJZ102 Isolate Rhizosphere
13 2854916844 Neorhizobium huautlense DSM 21817 Isolate Unclassified
14 2899803654 Agrobacterium sp. a22-2 Isolate Unclassified
15 2904439833 Herbaspirillum sp. 1589 Isolate Rhizosphere
16 2904530477 Herbaspirillum huttiense 611 Isolate Unclassified
17 2904584206 Herbaspirillum sp. 1050 Isolate Unclassified
18 2904589729 Herbaspirillum sp. 1130 Isolate Unclassified
19 2904601388 Herbaspirillum sp. 1273 Isolate Rhizosphere
20 2919046199 Herbaspirillum frisingense 596 Isolate Unclassified
21 2919079590 Herbaspirillum sp. 1173 Isolate Unclassified
22 2923510766 Herbaspirillum rubrisubalbicans SLBN-127 Isolate Rhizosphere
23 2928130867 Herbaspirillum seropedicae 1977 Isolate Unclassified
24 3007395558 Pseudomonas chlororaphis PCL1601 Isolate Rhizosphere
25 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
26 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
27 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
28 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
29 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
30 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
31 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
32 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
33 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
34 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
35 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
36 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
37 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
38 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
39 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
40 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
41 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
42 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
43 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
44 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
45 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
46 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
47 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
48 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
49 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
50 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
51 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
52 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
53 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
54 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
55 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
56 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
57 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
58 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
59 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
60 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
61 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
62 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
63 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
64 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
80 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
81 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
82 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
83 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
84 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
85 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
86 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
87 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
88 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
89 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
90 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
91 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
92 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
93 3300044666 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1E Metagenome Unclassified
94 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
95 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
96 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
97 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
98 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
99 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
100 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
101 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
102 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
103 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
104 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
105 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
106 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
107 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
108 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
109 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
110 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
111 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
112 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
113 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
114 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
115 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
116 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
117 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
118 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
119 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
120 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
121 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
122 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
123 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
124 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
125 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
126 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
127 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
128 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
129 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
130 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
131 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
132 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
133 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
134 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
135 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
136 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
137 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
138 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
142 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
145 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
150 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
151 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
152 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
153 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
154 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
155 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
156 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
157 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
158 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
159 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
160 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
161 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
162 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
163 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
164 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
165 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
166 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
167 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
168 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
169 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
170 3300053135 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 endosphere Metagenome Endosphere
171 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
172 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
173 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
174 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
175 8045864390 Aurantimonas endophytica KCTC 52296 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 88.36
Metatranscriptomes 0.86
Isolates 10.78

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.6
Nodule 0.86
Rhizoplane 3.88
Rhizosphere 76.72
Stem 0
Stem Tuber 0
Unclassified 12.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10105556 3300003322 Bacteria 1195
2 rootH1_10103496 3300003323 Unclassified 1310
3 Ga0055538_1000059 3300003751 Bacteria 112508
4 Ga0055539_1000089 3300003752 Bacteria 112508
5 Ga0055533_1000098 3300003756 Bacteria 112508
6 Ga0055525_1000130 3300003759 Bacteria 112508
7 Ga0055541_1000061 3300003841 Bacteria 112508
8 Ga0070683_100013883 3300005329 Bacteria 7035
9 Ga0070680_100049704 3300005336 Bacteria 3419
10 Ga0070660_100091084 3300005339 Bacteria 2405
11 Ga0070660_100232798 3300005339 Bacteria 1499
12 Ga0070659_100261096 3300005366 Bacteria 1437
13 Ga0070709_10210509 3300005434 Bacteria 1382
14 Ga0070714_100504911 3300005435 Unclassified 1154
15 Ga0070705_100076609 3300005440 Bacteria 2040
16 Ga0070679_100003198 3300005530 Bacteria 14961
17 Ga0070696_100024364 3300005546 Bacteria 4113
18 Ga0068855_100000366 3300005563 Bacteria 55965
19 Ga0068855_100012905 3300005563 Bacteria 10083
20 Ga0068854_100002985 3300005578 Bacteria 10491
21 Ga0068851_10015406 3300005834 Bacteria 3642
22 Ga0070715_10092120 3300006163 Unclassified 1397
23 Ga0070712_100342695 3300006175 Bacteria 1221
24 Ga0075428_100128337 3300006844 Bacteria 2759
25 Ga0075430_100020141 3300006846 Bacteria 5676
26 Ga0075431_100022478 3300006847 Bacteria 6447
27 Ga0075429_100044709 3300006880 Bacteria 3852
28 Ga0075429_100111853 3300006880 Bacteria 2387
29 Ga0105240_10158187 3300009093 Bacteria 2693
30 Ga0114129_10031292 3300009147 Bacteria 7525
31 Ga0105242_10131875 3300009176 Bacteria 2158
32 Ga0105237_10003526 3300009545 Bacteria 18545
33 Ga0105237_10040427 3300009545 Bacteria 4702
34 Ga0105237_10197049 3300009545 Bacteria 2014
35 Ga0105238_10000031 3300009551 Bacteria 179497
36 Ga0105239_10002893 3300010375 Bacteria 21450
37 Ga0157373_10000184 3300013100 Bacteria 51738
38 Ga0163162_10063866 3300013306 Bacteria 3726
39 Ga0157375_10184570 3300013308 Bacteria 2239
40 Ga0182006_1004509 3300015261 Bacteria 6856
41 Ga0206353_10225528 3300020082 Bacteria 2385
42 Ga0206353_11342136 3300020082 Bacteria 3408
43 Ga0213872_10012867 3300021361 Bacteria 3925
44 Ga0213875_10009622 3300021388 Bacteria 4886
45 Ga0213875_10062713 3300021388 Bacteria 1738
46 Ga0213871_10004122 3300021441 Bacteria 2878
47 Ga0209784_100018 3300025224 Bacteria 456816
48 Ga0209566_100016 3300025225 Bacteria 456824
49 Ga0209674_100030 3300025226 Bacteria 456824
50 Ga0209563_100034 3300025230 Bacteria 456824
51 Ga0209677_100019 3300025253 Bacteria 456824
52 Ga0207695_10007430 3300025913 Bacteria 13951
53 Ga0207671_10037602 3300025914 Bacteria 3588
54 Ga0207660_10236575 3300025917 Bacteria 1438
55 Ga0207652_10050774 3300025921 Bacteria 3554
56 Ga0207694_10001339 3300025924 Bacteria 21222
57 Ga0207664_10474448 3300025929 Unclassified 1119
58 Ga0207661_10017565 3300025944 Bacteria 5297
59 Ga0207667_10000044 3300025949 Bacteria 248251
60 Ga0207667_10014102 3300025949 Bacteria 9123
61 Ga0207640_10007802 3300025981 Bacteria 5912
62 Ga0207674_10193553 3300026116 Bacteria 1983
63 Ga0207428_10035528 3300027907 Bacteria 4073
64 Ga0307410_10029377 3300031852 Bacteria 3501
65 Ga0307412_10123448 3300031911 Bacteria 1868
66 Ga0373927_0292127 3300035695 Bacteria 1073
67 Ga0395900_0295362 3300037418 Bacteria 1608
68 Ga0395905_0002394 3300037471 Bacteria 20870
69 Ga0395905_0002868 3300037471 Bacteria 18825
70 Ga0395905_0067301 3300037471 Bacteria 3355
71 Ga0395905_0105527 3300037471 Bacteria 2646
72 Ga0436364_0051037 3300037853 Bacteria 1706
73 Ga0436364_0115113 3300037853 Bacteria 1597
74 Ga0436364_1334300 3300037853 Bacteria 3526
75 Ga0400483_068126 3300039062 Bacteria 5093
76 Ga0436365_1717956 3300039437 Bacteria 4685
77 Ga0436360_0822678 3300039438 Bacteria 4763
78 Ga0436361_0550198 3300039447 Bacteria 9793
79 Ga0436363_1028914 3300039450 Unclassified 1583
80 Ga0436362_0984714 3300039453 Bacteria 1716
81 Ga0439451_010499 3300042009 Bacteria 1866
82 Ga0466977_0000023 3300044666 Bacteria 23828
83 Ga0466966_0009938 3300044684 Bacteria 6310
84 Ga0466961_0019902 3300044693 Bacteria 4320
85 Ga0466961_0127503 3300044693 Bacteria 1596
86 Ga0466963_0016870 3300044694 Bacteria 4547
87 Ga0466963_0109207 3300044694 Bacteria 1898
88 Ga0466971_0045371 3300044719 Bacteria 1974
89 Ga0466968_0154670 3300044735 Bacteria 1056
90 Ga0466970_0140488 3300044765 Bacteria 1330
91 Ga0466959_0060996 3300045049 Bacteria 2743
92 Ga0495603_0054350 3300046455 Bacteria 2374
93 Ga0495653_0002966 3300046463 Bacteria 13592
94 Ga0495605_0026610 3300046474 Bacteria 3006
95 Ga0495664_0041762 3300046477 Bacteria 2714
96 Ga0495583_0000671 3300046506 Bacteria 44728
97 Ga0495583_0002280 3300046506 Bacteria 16795
98 Ga0495606_0008333 3300046507 Bacteria 9032
99 Ga0495606_0105368 3300046507 Bacteria 1709
100 Ga0495616_0000238 3300046513 Bacteria 44742
101 Ga0495628_0012988 3300046516 Bacteria 7015
102 Ga0495630_0013270 3300046517 Bacteria 5994
103 Ga0495637_0033602 3300046520 Bacteria 2251
104 Ga0495643_0000121 3300046522 Bacteria 125932
105 Ga0495643_0009700 3300046522 Bacteria 5957
106 Ga0495644_0019469 3300046523 Bacteria 2592
107 Ga0495642_0053346 3300046528 Bacteria 1666
108 Ga0495652_0012899 3300046529 Bacteria 7531
109 Ga0495665_0000074 3300046531 Bacteria 42760
110 Ga0495597_0004720 3300046542 Bacteria 7386
111 Ga0495645_0018992 3300046543 Bacteria 4946
112 Ga0495635_0089852 3300046663 Bacteria 2102
113 Ga0495661_0003466 3300046665 Bacteria 11644
114 Ga0495661_0037072 3300046665 Bacteria 3046
115 Ga0495661_0049789 3300046665 Bacteria 2539
116 Ga0495623_0009862 3300046679 Bacteria 6188
117 Ga0495646_0015450 3300046680 Bacteria 4845
118 Ga0495624_0002342 3300046690 Bacteria 14377
119 Ga0495670_0018487 3300046691 Bacteria 3431
120 Ga0495604_0013543 3300047317 Bacteria 6503
121 Ga0495680_0000747 3300047322 Bacteria 36401
122 Ga0495593_0003659 3300047673 Bacteria 9183
123 Ga0495602_0028611 3300048088 Bacteria 5328
124 Ga0495626_0001550 3300048091 Bacteria 18037
125 Ga0495626_0027093 3300048091 Bacteria 2788
126 Ga0495626_0097416 3300048091 Bacteria 1286
127 Ga0496102_0116012 3300048905 Bacteria 2499
128 Ga0496104_0059776 3300048907 Bacteria 3609
129 Ga0496104_0134385 3300048907 Bacteria 2376
130 Ga0496104_0150386 3300048907 Bacteria 2235
131 Ga0496105_0067899 3300048908 Bacteria 2944
132 Ga0496106_0051454 3300048909 Bacteria 3106
133 Ga0496110_0236275 3300048913 Bacteria 1663
134 Ga0496110_0594299 3300048913 Bacteria 1004
135 Ga0496115_0251187 3300048918 Unclassified 1456
136 Ga0496116_0112071 3300048919 Bacteria 1600
137 Ga0496121_0013989 3300048924 Bacteria 8570
138 Ga0496121_0053264 3300048924 Bacteria 3391
139 Ga0496126_0091988 3300048929 Bacteria 2666
140 Ga0496126_0129104 3300048929 Bacteria 2186
141 Ga0496126_0161266 3300048929 Bacteria 1916
142 Ga0501031_0004711 3300049568 Bacteria 8846
143 Ga0501031_0077963 3300049568 Bacteria 2158
144 Ga0501031_0082814 3300049568 Bacteria 2091
145 Ga0501032_0023626 3300049569 Bacteria 4244
146 Ga0501034_0000353 3300049571 Bacteria 79342
147 Ga0501034_0041192 3300049571 Bacteria 4673
148 Ga0501036_0007679 3300049572 Bacteria 8807
149 Ga0501036_0049266 3300049572 Bacteria 3567
150 Ga0501037_0016330 3300049573 Bacteria 5463
151 Ga0501037_0032835 3300049573 Bacteria 3835
152 Ga0501038_0037375 3300049574 Bacteria 4257
153 Ga0501038_0257522 3300049574 Bacteria 1380
154 Ga0501039_0010251 3300049575 Bacteria 7143
155 Ga0501039_0161919 3300049575 Bacteria 1759
156 Ga0501040_0023989 3300049576 Bacteria 4092
157 Ga0501040_0029954 3300049576 Bacteria 3673
158 Ga0501041_0011557 3300049577 Bacteria 5221
159 Ga0501042_0002931 3300049578 Bacteria 10592
160 Ga0501042_0065135 3300049578 Bacteria 2604
161 Ga0501042_0238047 3300049578 Bacteria 1313
162 Ga0501043_0022561 3300049579 Bacteria 4936
163 Ga0501048_0015902 3300049582 Bacteria 5551
164 Ga0501048_0102554 3300049582 Bacteria 2019
165 Ga0501067_0025464 3300049583 Bacteria 3279
166 Ga0501068_0084725 3300049584 Bacteria 1950
167 Ga0501069_0025347 3300049585 Bacteria 3240
168 Ga0501069_0060246 3300049585 Bacteria 2119
169 Ga0501069_0069428 3300049585 Bacteria 1973
170 Ga0501070_0020170 3300049586 Bacteria 5592
171 Ga0501070_0020414 3300049586 Bacteria 5557
172 Ga0501070_0047752 3300049586 Bacteria 3557
173 Ga0501070_0146813 3300049586 Bacteria 1947
174 Ga0501070_0180431 3300049586 Bacteria 1738
175 Ga0501071_0036549 3300049587 Bacteria 3503
176 Ga0501072_0027260 3300049588 Bacteria 4457
177 Ga0501072_0037213 3300049588 Bacteria 3816
178 Ga0501074_0010770 3300049590 Bacteria 6641
179 Ga0501074_0030020 3300049590 Bacteria 3940
180 Ga0501074_0238891 3300049590 Bacteria 1292
181 Ga0501075_0014497 3300049591 Bacteria 5649
182 Ga0501075_0048048 3300049591 Bacteria 3207
183 Ga0501076_0093534 3300049592 Bacteria 2419
184 Ga0501077_0009007 3300049593 Bacteria 6196
185 Ga0501077_0011926 3300049593 Bacteria 5437
186 Ga0501079_0005298 3300049741 Bacteria 9594
187 Ga0501079_0011604 3300049741 Bacteria 6728
188 Ga0501080_0075663 3300049742 Bacteria 3131
189 Ga0501080_0215579 3300049742 Bacteria 1758
190 Ga0501081_0007578 3300049743 Bacteria 7036
191 Ga0501035_0127888 3300049822 Bacteria 2217
192 Ga0501045_0014013 3300049824 Bacteria 5675
193 Ga0501045_0087193 3300049824 Bacteria 2304
194 Ga0501045_0422240 3300049824 Bacteria 992
195 nmdc:mga05p37_34534_c1 3300050507 Bacteria 6194
196 nmdc:mga09592_675_c1 3300050508 Bacteria 26098
197 nmdc:mga0qj67_8255_c1 3300050509 Bacteria 7720
198 nmdc:mga06r32_135621_c1 3300050510 Bacteria 2436
199 Ga0500618_000077 3300053125 Bacteria 80520
200 Ga0500618_003941 3300053125 Bacteria 4920
201 Ga0500659_0003480 3300053135 Bacteria 9199
202 Ga0501084_0056854 3300054114 Bacteria 3273
203 Ga0501082_0011291 3300060353 Bacteria 7678
204 Ga0501082_0018661 3300060353 Bacteria 5977
205 Ga0501082_0069716 3300060353 Bacteria 3028
206 Ga0466962_0063776 3300061719 Bacteria 1759
207 Ga0530510_0017141 3300061734 Bacteria 5130

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300005435 Ga0070714_100504911 Ga0070714_1005049112 236
2 3300035695 Ga0373927_0292127 Ga0373927_0292127_231_1016 257
3 3300021388 Ga0213875_10062713 Ga0213875_100627132 274
4 3300037853 Ga0436364_0051037 Ga0436364_0051037_412_1338 274
5 3300049585 Ga0501069_0069428 Ga0501069_0069428_106_1122 285
6 3300049586 Ga0501070_0020414 Ga0501070_0020414_3245_4297 285
7 3300049590 Ga0501074_0030020 Ga0501074_0030020_765_1781 285
8 3300025929 Ga0207664_10474448 Ga0207664_104744482 288
9 3300048907 Ga0496104_0134385 Ga0496104_0134385_762_1682 289
10 3300048909 Ga0496106_0051454 Ga0496106_0051454_2024_2944 289
11 3300048913 Ga0496110_0236275 Ga0496110_0236275_346_1266 289
12 3300049585 Ga0501069_0060246 Ga0501069_0060246_1169_2047 289
13 3300049583 Ga0501067_0025464 Ga0501067_0025464_1548_2432 291
14 3300049585 Ga0501069_0025347 Ga0501069_0025347_1016_1900 291
15 3300044693 Ga0466961_0127503 Ga0466961_0127503_362_1267 294
16 3300042009 Ga0439451_010499 Ga0439451_010499_378_1325 298
17 3300048919 Ga0496116_0112071 Ga0496116_0112071_148_1119 298
18 3300037471 Ga0395905_0002868 Ga0395905_0002868_3268_4218 299
19 3300049824 Ga0501045_0422240 Ga0501045_0422240_67_975 299
20 3300044666 Ga0466977_0000023 Ga0466977_0000023_14709_15635 300
21 3300046691 Ga0495670_0018487 Ga0495670_0018487_2288_3244 300
22 iso_pu_bacteria 2521172590 2521560450 300
23 3300039447 Ga0436361_0550198 Ga0436361_0550198_4660_5571 301
24 3300046455 Ga0495603_0054350 Ga0495603_0054350_726_1664 302
25 3300003323 rootH1_10103496 rootH1_101034961 303
26 3300049586 Ga0501070_0047752 Ga0501070_0047752_1826_2770 303
27 3300049586 Ga0501070_0146813 Ga0501070_0146813_983_1903 303
28 3300060353 Ga0501082_0011291 Ga0501082_0011291_6329_7273 303
29 3300037471 Ga0395905_0105527 Ga0395905_0105527_256_1176 304
30 3300039437 Ga0436365_1717956 Ga0436365_1717956_1799_2728 304
31 3300039450 Ga0436363_1028914 Ga0436363_1028914_541_1470 304
32 3300049568 Ga0501031_0004711 Ga0501031_0004711_7151_8080 305
33 3300049571 Ga0501034_0000353 Ga0501034_0000353_21706_22638 305
34 3300049572 Ga0501036_0007679 Ga0501036_0007679_894_1823 305
35 3300049573 Ga0501037_0032835 Ga0501037_0032835_183_1112 305
36 3300049574 Ga0501038_0037375 Ga0501038_0037375_1668_2597 305
37 3300049575 Ga0501039_0010251 Ga0501039_0010251_5647_6576 305
38 3300049576 Ga0501040_0023989 Ga0501040_0023989_2947_3876 305
39 3300049577 Ga0501041_0011557 Ga0501041_0011557_3814_4743 305
40 3300049578 Ga0501042_0065135 Ga0501042_0065135_485_1414 305
41 3300049582 Ga0501048_0015902 Ga0501048_0015902_651_1580 305
42 3300049584 Ga0501068_0084725 Ga0501068_0084725_563_1489 305
43 3300049587 Ga0501071_0036549 Ga0501071_0036549_1189_2118 305
44 3300049588 Ga0501072_0027260 Ga0501072_0027260_1381_2310 305
45 3300049590 Ga0501074_0010770 Ga0501074_0010770_4777_5706 305
46 3300049591 Ga0501075_0014497 Ga0501075_0014497_2453_3382 305
47 3300049592 Ga0501076_0093534 Ga0501076_0093534_1277_2206 305
48 3300049593 Ga0501077_0009007 Ga0501077_0009007_4895_5824 305
49 3300049741 Ga0501079_0011604 Ga0501079_0011604_3535_4464 305
50 3300049742 Ga0501080_0075663 Ga0501080_0075663_32_964 305
51 3300049742 Ga0501080_0215579 Ga0501080_0215579_588_1517 305
52 3300049822 Ga0501035_0127888 Ga0501035_0127888_1004_1933 305
53 3300049824 Ga0501045_0014013 Ga0501045_0014013_2633_3562 305
54 3300053135 Ga0500659_0003480 Ga0500659_0003480_3714_4646 305
55 3300060353 Ga0501082_0069716 Ga0501082_0069716_1521_2450 305
56 iso_pu_bacteria 3007395558 3007401354 305
57 3300013100 Ga0157373_10000184 Ga0157373_100001846 306
58 3300013308 Ga0157375_10184570 Ga0157375_101845702 306
59 3300027907 Ga0207428_10035528 Ga0207428_100355282 306
60 3300037471 Ga0395905_0067301 Ga0395905_0067301_683_1618 306
61 3300039062 Ga0400483_068126 Ga0400483_068126_109_1044 306
62 3300049571 Ga0501034_0041192 Ga0501034_0041192_3469_4404 306
63 3300049579 Ga0501043_0022561 Ga0501043_0022561_3050_3976 306
64 3300061734 Ga0530510_0017141 Ga0530510_0017141_374_1351 306
65 iso_pu_bacteria 8045864390 8045867089 306
66 3300005440 Ga0070705_100076609 Ga0070705_1000766092 307
67 3300005546 Ga0070696_100024364 Ga0070696_1000243642 307
68 iso_pu_bacteria 2728368998 2728754081 307
69 iso_pu_bacteria 2854916844 2854920442 307
70 iso_pu_bacteria 2899803654 2899806307 307
71 3300006175 Ga0070712_100342695 Ga0070712_1003426951 308
72 3300006844 Ga0075428_100128337 Ga0075428_1001283372 308
73 3300006847 Ga0075431_100022478 Ga0075431_1000224785 308
74 3300006880 Ga0075429_100111853 Ga0075429_1001118532 308
75 3300009147 Ga0114129_10031292 Ga0114129_100312924 308
76 3300044684 Ga0466966_0009938 Ga0466966_0009938_3623_4570 308
77 3300044693 Ga0466961_0019902 Ga0466961_0019902_3223_4170 308
78 3300044694 Ga0466963_0016870 Ga0466963_0016870_493_1440 308
79 3300044719 Ga0466971_0045371 Ga0466971_0045371_441_1388 308
80 3300045049 Ga0466959_0060996 Ga0466959_0060996_925_1872 308
81 3300046474 Ga0495605_0026610 Ga0495605_0026610_1153_2091 308
82 3300046513 Ga0495616_0000238 Ga0495616_0000238_1966_2904 308
83 3300046522 Ga0495643_0000121 Ga0495643_0000121_50600_51538 308
84 3300050507 nmdc:mga05p37_34534_c1 nmdc:mga05p37_34534_c1_4700_5635 308
85 3300050510 nmdc:mga06r32_135621_c1 nmdc:mga06r32_135621_c1_204_1139 308
86 3300061719 Ga0466962_0063776 Ga0466962_0063776_549_1496 308
87 3300037853 Ga0436364_1334300 Ga0436364_1334300_2154_3092 309
88 3300046665 Ga0495661_0049789 Ga0495661_0049789_283_1218 309
89 iso_pu_bacteria 2643221603 2644031674 309
90 iso_pu_bacteria 2765235838 2765571675 309
91 iso_pu_bacteria 2839094727 2839098635 309
92 3300005336 Ga0070680_100049704 Ga0070680_1000497042 310
93 3300005339 Ga0070660_100091084 Ga0070660_1000910842 310
94 3300005366 Ga0070659_100261096 Ga0070659_1002610962 310
95 3300005434 Ga0070709_10210509 Ga0070709_102105091 310
96 3300005530 Ga0070679_100003198 Ga0070679_10000319815 310
97 3300006163 Ga0070715_10092120 Ga0070715_100921201 310
98 3300009176 Ga0105242_10131875 Ga0105242_101318752 310
99 3300013306 Ga0163162_10063866 Ga0163162_100638663 310
100 3300020082 Ga0206353_10225528 Ga0206353_102255282 310
101 3300020082 Ga0206353_11342136 Ga0206353_113421363 310
102 3300025917 Ga0207660_10236575 Ga0207660_102365752 310
103 3300025921 Ga0207652_10050774 Ga0207652_100507742 310
104 3300046463 Ga0495653_0002966 Ga0495653_0002966_10190_11149 310
105 3300046477 Ga0495664_0041762 Ga0495664_0041762_991_1932 310
106 3300046507 Ga0495606_0105368 Ga0495606_0105368_377_1318 310
107 3300046516 Ga0495628_0012988 Ga0495628_0012988_2327_3286 310
108 3300046517 Ga0495630_0013270 Ga0495630_0013270_3352_4311 310
109 3300046529 Ga0495652_0012899 Ga0495652_0012899_2234_3193 310
110 3300046531 Ga0495665_0000074 Ga0495665_0000074_31849_32808 310
111 3300046543 Ga0495645_0018992 Ga0495645_0018992_2537_3496 310
112 3300046663 Ga0495635_0089852 Ga0495635_0089852_247_1206 310
113 3300046679 Ga0495623_0009862 Ga0495623_0009862_2511_3470 310
114 3300046680 Ga0495646_0015450 Ga0495646_0015450_3408_4367 310
115 3300046690 Ga0495624_0002342 Ga0495624_0002342_3506_4465 310
116 3300047317 Ga0495604_0013543 Ga0495604_0013543_3605_4564 310
117 3300047322 Ga0495680_0000747 Ga0495680_0000747_6688_7647 310
118 3300047673 Ga0495593_0003659 Ga0495593_0003659_4680_5639 310
119 3300048088 Ga0495602_0028611 Ga0495602_0028611_719_1678 310
120 3300048905 Ga0496102_0116012 Ga0496102_0116012_1207_2166 310
121 3300048907 Ga0496104_0150386 Ga0496104_0150386_1094_2035 310
122 3300048908 Ga0496105_0067899 Ga0496105_0067899_1185_2126 310
123 3300048918 Ga0496115_0251187 Ga0496115_0251187_286_1224 310
124 3300048924 Ga0496121_0053264 Ga0496121_0053264_1568_2506 310
125 3300048929 Ga0496126_0091988 Ga0496126_0091988_891_1832 310
126 3300049568 Ga0501031_0077963 Ga0501031_0077963_59_1033 310
127 3300049569 Ga0501032_0023626 Ga0501032_0023626_110_1084 310
128 3300049572 Ga0501036_0049266 Ga0501036_0049266_482_1456 310
129 3300049573 Ga0501037_0016330 Ga0501037_0016330_638_1612 310
130 3300049576 Ga0501040_0029954 Ga0501040_0029954_417_1391 310
131 3300049578 Ga0501042_0002931 Ga0501042_0002931_2171_3145 310
132 3300049582 Ga0501048_0102554 Ga0501048_0102554_993_1967 310
133 3300049586 Ga0501070_0020170 Ga0501070_0020170_1980_2927 310
134 3300049588 Ga0501072_0037213 Ga0501072_0037213_2471_3445 310
135 3300049590 Ga0501074_0238891 Ga0501074_0238891_262_1236 310
136 3300049591 Ga0501075_0048048 Ga0501075_0048048_980_1954 310
137 3300049593 Ga0501077_0011926 Ga0501077_0011926_1678_2652 310
138 3300049741 Ga0501079_0005298 Ga0501079_0005298_1240_2214 310
139 3300049743 Ga0501081_0007578 Ga0501081_0007578_5811_6785 310
140 3300049824 Ga0501045_0087193 Ga0501045_0087193_24_998 310
141 3300054114 Ga0501084_0056854 Ga0501084_0056854_1846_2820 310
142 3300060353 Ga0501082_0018661 Ga0501082_0018661_3188_4162 310
143 3300005329 Ga0070683_100013883 Ga0070683_1000138834 311
144 3300005339 Ga0070660_100232798 Ga0070660_1002327982 311
145 3300009093 Ga0105240_10158187 Ga0105240_101581872 311
146 3300009545 Ga0105237_10197049 Ga0105237_101970493 311
147 3300025944 Ga0207661_10017565 Ga0207661_100175654 311
148 3300031852 Ga0307410_10029377 Ga0307410_100293773 311
149 3300044694 Ga0466963_0109207 Ga0466963_0109207_346_1302 311
150 3300044735 Ga0466968_0154670 Ga0466968_0154670_67_1008 311
151 3300046520 Ga0495637_0033602 Ga0495637_0033602_60_1022 311
152 3300046523 Ga0495644_0019469 Ga0495644_0019469_551_1495 311
153 3300048091 Ga0495626_0001550 Ga0495626_0001550_3342_4289 311
154 3300048091 Ga0495626_0027093 Ga0495626_0027093_894_1844 311
155 3300048091 Ga0495626_0097416 Ga0495626_0097416_24_980 311
156 3300048907 Ga0496104_0059776 Ga0496104_0059776_1897_2844 311
157 3300048913 Ga0496110_0594299 Ga0496110_0594299_16_963 311
158 3300003751 Ga0055538_1000059 Ga0055538_100005983 312
159 3300003752 Ga0055539_1000089 Ga0055539_100008983 312
160 3300003756 Ga0055533_1000098 Ga0055533_100009883 312
161 3300003759 Ga0055525_1000130 Ga0055525_100013083 312
162 3300003841 Ga0055541_1000061 Ga0055541_100006183 312
163 3300005563 Ga0068855_100000366 Ga0068855_10000036620 312
164 3300005563 Ga0068855_100012905 Ga0068855_10001290512 312
165 3300005578 Ga0068854_100002985 Ga0068854_1000029857 312
166 3300005834 Ga0068851_10015406 Ga0068851_100154064 312
167 3300006846 Ga0075430_100020141 Ga0075430_1000201417 312
168 3300006880 Ga0075429_100044709 Ga0075429_1000447092 312
169 3300009545 Ga0105237_10003526 Ga0105237_1000352614 312
170 3300009545 Ga0105237_10040427 Ga0105237_100404275 312
171 3300009551 Ga0105238_10000031 Ga0105238_10000031137 312
172 3300010375 Ga0105239_10002893 Ga0105239_1000289316 312
173 3300015261 Ga0182006_1004509 Ga0182006_10045095 312
174 3300021361 Ga0213872_10012867 Ga0213872_100128671 312
175 3300021388 Ga0213875_10009622 Ga0213875_100096223 312
176 3300021441 Ga0213871_10004122 Ga0213871_100041223 312
177 3300025224 Ga0209784_100018 Ga0209784_100018251 312
178 3300025225 Ga0209566_100016 Ga0209566_100016251 312
179 3300025226 Ga0209674_100030 Ga0209674_100030251 312
180 3300025230 Ga0209563_100034 Ga0209563_100034251 312
181 3300025253 Ga0209677_100019 Ga0209677_100019251 312
182 3300025913 Ga0207695_10007430 Ga0207695_1000743012 312
183 3300025914 Ga0207671_10037602 Ga0207671_100376024 312
184 3300025924 Ga0207694_10001339 Ga0207694_100013397 312
185 3300025949 Ga0207667_10000044 Ga0207667_10000044194 312
186 3300025949 Ga0207667_10014102 Ga0207667_100141025 312
187 3300025981 Ga0207640_10007802 Ga0207640_100078024 312
188 3300026116 Ga0207674_10193553 Ga0207674_101935532 312
189 3300037853 Ga0436364_0115113 Ga0436364_0115113_119_1069 312
190 3300039438 Ga0436360_0822678 Ga0436360_0822678_765_1715 312
191 3300039453 Ga0436362_0984714 Ga0436362_0984714_665_1615 312
192 3300044765 Ga0466970_0140488 Ga0466970_0140488_11_988 312
193 3300046506 Ga0495583_0000671 Ga0495583_0000671_2207_3151 312
194 3300046506 Ga0495583_0002280 Ga0495583_0002280_11642_12601 312
195 3300046507 Ga0495606_0008333 Ga0495606_0008333_7988_8935 312
196 3300046522 Ga0495643_0009700 Ga0495643_0009700_1872_2819 312
197 3300046528 Ga0495642_0053346 Ga0495642_0053346_440_1387 312
198 3300046542 Ga0495597_0004720 Ga0495597_0004720_6180_7127 312
199 3300046665 Ga0495661_0003466 Ga0495661_0003466_2611_3576 312
200 3300046665 Ga0495661_0037072 Ga0495661_0037072_490_1437 312
201 3300048924 Ga0496121_0013989 Ga0496121_0013989_1449_2390 312
202 3300048929 Ga0496126_0161266 Ga0496126_0161266_337_1305 312
203 3300049578 Ga0501042_0238047 Ga0501042_0238047_56_1012 312
204 3300050508 nmdc:mga09592_675_c1 nmdc:mga09592_675_c1_2399_3361 312
205 3300050509 nmdc:mga0qj67_8255_c1 nmdc:mga0qj67_8255_c1_6561_7523 312
206 3300053125 Ga0500618_000077 Ga0500618_000077_2057_3016 312
207 3300053125 Ga0500618_003941 Ga0500618_003941_692_1693 312
208 iso_pu_bacteria 2511231026 2511387967 312
209 iso_pu_bacteria 2551306416 2553005480 312
210 iso_pu_bacteria 2808606386 2808982257 312
211 iso_pu_bacteria 2808606415 2809129943 312
212 iso_pu_bacteria 2808606419 2809149002 312
213 iso_pu_bacteria 2818991449 2819617121 312
214 iso_pu_bacteria 2852618963 2852619141 312
215 iso_pu_bacteria 2904439833 2904442749 312
216 iso_pu_bacteria 2904530477 2904535038 312
217 iso_pu_bacteria 2904584206 2904588624 312
218 iso_pu_bacteria 2904589729 2904594302 312
219 iso_pu_bacteria 2904601388 2904604856 312
220 iso_pu_bacteria 2919046199 2919048721 312
221 iso_pu_bacteria 2919079590 2919083094 312
222 iso_pu_bacteria 2923510766 2923514140 312
223 iso_pu_bacteria 2928130867 2928132952 312
224 3300031911 Ga0307412_10123448 Ga0307412_101234482 313
225 3300037418 Ga0395900_0295362 Ga0395900_0295362_130_1095 313
226 3300037471 Ga0395905_0002394 Ga0395905_0002394_8660_9625 313
227 3300049568 Ga0501031_0082814 Ga0501031_0082814_370_1320 313
228 3300049574 Ga0501038_0257522 Ga0501038_0257522_147_1097 313
229 3300049575 Ga0501039_0161919 Ga0501039_0161919_268_1218 313
230 3300049586 Ga0501070_0180431 Ga0501070_0180431_497_1561 313
231 3300003322 rootL2_10105556 rootL2_101055561 316
232 3300048929 Ga0496126_0129104 Ga0496126_0129104_1198_2148 316

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02737

3HCDH_N

3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

19

197

0.97

PF00725

3HCDH

3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

199

281

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
7exs-assembly1.cif.gz_A thermomicrobium roseum sarcosine oxidase mutant - s320r 0.9982 7 37
7kpt-assembly1.cif.gz_A crystal structure of ctde in complex with fad and substrate 4 0.991 7 39
5nmw-assembly2.cif.gz_D crystal structure of the pyrrolizidine alkaloid n-oxygenase from zonocerus variegatus in complex with fad 0.9895 6 37
5bul-assembly1.cif.gz_A structure of flavin-dependent brominase bmp2 triple mutant y302s f306v a345w 0.9888 9 38
5nmw-assembly1.cif.gz_A-2 crystal structure of the pyrrolizidine alkaloid n-oxygenase from zonocerus variegatus in complex with fad 0.984 6 39
ID Description Score Start End Superfamily
af_P9WNY9_4_366_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9918 9 37 3.50.50.60
af_Q5VQP1_29_415_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9834 9 39 3.50.50.60
af_Q8VYV2_23_370_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.98 10 37 3.50.50.60
af_Q8H191_31_475_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9771 10 39 3.50.50.60
af_B0G160_35_582_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9749 9 37 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A0E4BQU7-F1-model_v4 3-hydroxyacyl-CoA dehydrogenase NAD binding domain-containing protein 0.9827 68 174 GO:0006631
GO:0016491
GO:0070403
AF-A0A5C8SS31-F1-model_v4 3-hydroxyacyl-CoA dehydrogenase 0.9773 10 248 GO:0006631
GO:0009056
GO:0016616
GO:0070403
AF-A0A529HNL7-F1-model_v4 L-carnitine dehydrogenase 0.9722 88 255 GO:0006631
GO:0009056
GO:0016616
GO:0070403
AF-A0A5B7DM71-F1-model_v4 Lambda-crystallin 0.9626 71 236 GO:0006631
GO:0050104
GO:0070403
AF-A0A7S2HKU4-F1-model_v4 3-hydroxyacyl-CoA dehydrogenase NAD binding domain-containing protein 0.9622 89 193 GO:0006635
GO:0016829
GO:0016853
GO:0070403

Feature Viewer

pLDDT pTM Quality
92.09 0.87 High
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Predicted Structure (AlphaFold2)

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