F345692

General Info

Members Datasets Scaffolds Average Seq Length
233 161 466 234

Family's Representative Sequence

Representative Sequence 3300003316|rootH1_10150250|rootH1_101502503
Length 274
Sequence VWLVDPRTFLNRIAHIEKASVDETIEHRETSATLHAVRGQSVFSMRSLPEGYASIVIGASGGIGSAIAEAIRQDPRAGEIVRLSRSDDGLEVEKEWTVKAHAATLGARTFHLIICATGALTIDGHGPEKAIRQIDHDIMAKQFSTNAIGPAIVLKHFIPLLPRKERSLFVVLSARVGSIGDNRLGGWISYRSAKAALNQIVKTTSIELSRTKPHAILVAIHPGTVATTLTEPFSGGHERQAPDRASRLILQTADGLTSAQNGGFFAYDGSAIAW

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
3 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
4 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
10 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
11 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
12 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
13 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
14 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
15 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
16 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
17 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
18 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
19 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
20 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
21 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
25 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
26 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
27 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
28 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
29 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
30 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
31 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
34 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
38 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
39 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
40 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
42 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
43 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
44 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
45 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
47 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
56 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
57 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
60 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
61 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
62 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
63 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
64 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
65 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
66 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
67 3300041501 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_7 MetaG Metagenome Unclassified
68 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
69 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
70 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
71 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
72 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
73 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
74 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
75 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
76 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
77 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
78 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
79 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
80 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
81 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
82 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
83 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
84 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
85 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
86 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
87 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
88 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
89 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
93 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
94 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
95 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
96 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
97 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
98 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
99 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
100 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
101 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
102 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
103 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
104 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
105 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
106 2510461069 Rhizobium sp. PDO1-076 Isolate Rhizosphere
107 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
108 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
109 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
110 2600254933 Rhizobium sp. NFR12 Isolate Rhizoplane
111 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
112 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
113 2643221558 Rhizobium sp. Root149 Isolate Unclassified
114 2643221607 Rhizobium sp. Root73 Isolate Unclassified
115 2643221637 Rhizobium sp. Root1212 Isolate Unclassified
116 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
117 2643221686 Rhizobium sp. Root1334 Isolate Unclassified
118 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
119 2643221693 Rhizobium sp. Root491 Isolate Unclassified
120 2643221718 Rhizobium sp. Root268 Isolate Unclassified
121 2643221719 Rhizobium sp. Root274 Isolate Unclassified
122 2738541293 Rhizobium sp. GV031 Isolate Unclassified
123 2738541317 Rhizobium halophytocola DSM 21600 Isolate Unclassified
124 2738541333 Rhizobium sophoriradicis CCBAU 03470 Isolate Unclassified
125 2791355267 Rhizobium sp. L18 Isolate Nodule
126 2802429633 Rhizobium anhuiense J3 Isolate Nodule
127 2802429637 Rhizobium anhuiense C15 Isolate Nodule
128 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
129 2818991272 Rhizobium sp. SLBN-4 Isolate Unclassified
130 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
131 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
132 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
133 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
134 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
135 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
136 2842217011 Rhizobium leguminosarum SEMIA 475 Isolate Nodule
137 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
138 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
139 2894817345 Aureimonas psammosilenae YIM DR1026 Isolate Unclassified
140 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
141 2913308742 Rhizobium halophytocola DSM 21600 Isolate Unclassified
142 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
143 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
144 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
145 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
146 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
147 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
148 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
149 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
150 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
151 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
152 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
153 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
154 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
155 639633055 Rhizobium leguminosarum bv. viciae 3841 Isolate Unclassified
156 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
157 8005246636 Rhizobium wuzhouense W44 Isolate Rhizosphere
158 8005658619 Rhizobium terrae CC-HIH110 Isolate Unclassified
159 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
160 8054460903 Agrobacterium vaccinii B7.6 Isolate Unclassified
161 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 75.11
Metatranscriptomes 0
Isolates 24.89

Biome Distribution

Category Percentage (%)
Aerial Root 1.72
Bulb 0
Endosphere 33.48
Nodule 6.44
Rhizoplane 3.86
Rhizosphere 19.31
Stem 0
Stem Tuber 0
Unclassified 0.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10150250 3300003316 Bacteria 2346
2 JGI25158J39367_1000002 3300002739 Bacteria 73701
3 JGI25152J39213_1000254 3300002773 Bacteria 35531
4 JGI25152J39213_1003529 3300002773 Bacteria 5296
5 JGI25159J45721_1000057 3300002987 Bacteria 53636
6 JGI25151J46595_10008600 3300003187 Bacteria 4893
7 JGI25153J46596_10000440 3300003215 Bacteria 26742
8 rootH2_10273541 3300003320 Bacteria 2402
9 rootL2_10364454 3300003322 Bacteria 1203
10 rootH1_10158016 3300003323 Bacteria 4097
11 JGI25160J50197_1000070 3300003354 Bacteria 110748
12 JGI25161J50226_1000026 3300003374 Bacteria 146134
13 Ga0055526_1013734 3300003771 Bacteria 3398
14 Ga0055524_1000837 3300003775 Bacteria 20200
15 Ga0055528_1000039 3300003790 Bacteria 112899
16 Ga0055528_1001643 3300003790 Bacteria 13158
17 Ga0055528_1001982 3300003790 Bacteria 11537
18 Ga0055540_1000626 3300003792 Bacteria 25158
19 Ga0055540_1002900 3300003792 Bacteria 8681
20 Ga0055543_1000085 3300004625 Bacteria 81274
21 Ga0065165_1001454 3300005262 Bacteria 25582
22 Ga0065165_1005545 3300005262 Bacteria 7028
23 Ga0065165_1009427 3300005262 Bacteria 4379
24 Ga0065704_10082808 3300005289 Bacteria 3549
25 Ga0070670_100000925 3300005331 Bacteria 23056
26 Ga0070668_100697192 3300005347 Bacteria 895
27 Ga0070663_100123933 3300005455 Bacteria 1955
28 Ga0068853_100259189 3300005539 Bacteria 1598
29 Ga0070665_100012173 3300005548 Bacteria 8674
30 Ga0070665_100086821 3300005548 Bacteria 3134
31 Ga0075368_10006286 3300006042 Bacteria 4143
32 Ga0075364_10053358 3300006051 Bacteria 2643
33 Ga0075367_10005948 3300006178 Bacteria 6123
34 Ga0075369_10002670 3300006186 Bacteria 6388
35 Ga0075366_10025537 3300006195 Bacteria 3452
36 Ga0075366_10032818 3300006195 Bacteria 3057
37 Ga0075370_10098077 3300006353 Bacteria 1695
38 Ga0099826_10000076 3300006948 Bacteria 51489
39 Ga0105244_10093818 3300009036 Bacteria 1474
40 Ga0105243_10278115 3300009148 Bacteria 1506
41 Ga0157373_10017173 3300013100 Bacteria 5268
42 Ga0157371_10000005 3300013102 Bacteria 416456
43 Ga0157371_10080269 3300013102 Bacteria 2310
44 Ga0157370_10002453 3300013104 Bacteria 22378
45 Ga0157370_10037404 3300013104 Bacteria 4705
46 Ga0157370_10050783 3300013104 Bacteria 3962
47 Ga0157369_10023054 3300013105 Bacteria 6939
48 Ga0209436_100016 3300025208 Bacteria 117496
49 Ga0207425_1001413 3300025245 Bacteria 10092
50 Ga0209129_1000092 3300025258 Bacteria 173874
51 Ga0209129_1000166 3300025258 Bacteria 97875
52 Ga0209673_1000161 3300025273 Bacteria 142073
53 Ga0209673_1000165 3300025273 Bacteria 138061
54 Ga0209673_1001595 3300025273 Bacteria 19981
55 Ga0209130_1000073 3300025284 Bacteria 174439
56 Ga0209130_1002741 3300025284 Bacteria 8335
57 Ga0209130_1026939 3300025284 Bacteria 1227
58 Ga0209025_1000336 3300025294 Bacteria 103514
59 Ga0209025_1002231 3300025294 Bacteria 21344
60 Ga0209564_1002104 3300025295 Bacteria 17004
61 Ga0209564_1014012 3300025295 Bacteria 3363
62 Ga0209758_1001073 3300025297 Bacteria 35582
63 Ga0209758_1018775 3300025297 Bacteria 3371
64 Ga0209256_1000144 3300025299 Bacteria 151157
65 Ga0209256_1003253 3300025299 Bacteria 11683
66 Ga0207426_1000140 3300025302 Bacteria 195664
67 Ga0209051_1000664 3300025303 Bacteria 38581
68 Ga0209051_1019972 3300025303 Bacteria 2906
69 Ga0209051_1030066 3300025303 Bacteria 2114
70 Ga0209051_1043124 3300025303 Bacteria 1586
71 Ga0209257_1006258 3300025304 Bacteria 7786
72 Ga0209257_1022812 3300025304 Bacteria 2220
73 Ga0207694_10737079 3300025924 Bacteria 831
74 Ga0207650_10015297 3300025925 Bacteria 5341
75 Ga0207709_10165151 3300025935 Bacteria 1548
76 Ga0207668_10460326 3300025972 Bacteria 1087
77 Ga0207668_10495340 3300025972 Bacteria 1050
78 Ga0207639_10202003 3300026041 Bacteria 1705
79 Ga0207678_10210770 3300026067 Bacteria 1662
80 Ga0209371_1000012 3300027312 Bacteria 748304
81 Ga0209282_1000039 3300027666 Bacteria 128517
82 Ga0209813_10005280 3300027866 Bacteria 3126
83 Ga0268266_10010083 3300028379 Bacteria 8285
84 Ga0268266_10012106 3300028379 Bacteria 7467
85 Ga0307515_10000017 3300028794 Bacteria 550465
86 Ga0268256_1000013 3300030500 Bacteria 752103
87 Ga0307513_10005235 3300031456 Bacteria 17180
88 Ga0307405_10143584 3300031731 Bacteria 1668
89 Ga0400483_091700 3300039062 Unclassified 1022
90 Ga0400483_236881 3300039062 Bacteria 5331
91 Ga0451802_0120499 3300041460 Bacteria 1038
92 Ga0451837_1654926 3300041494 Bacteria 3821
93 Ga0451841_0771765 3300041498 Bacteria 1393
94 Ga0451845_0426393 3300041501 Bacteria 3415
95 Ga0451849_0259573 3300041505 Bacteria 7990
96 Ga0451851_0308337 3300041507 Bacteria 2045
97 Ga0451843_0292514 3300041509 Bacteria 5859
98 Ga0451855_0342524 3300041511 Bacteria 9360
99 Ga0495606_0149383 3300046507 Bacteria 1373
100 Ga0495654_0001447 3300046530 Bacteria 16303
101 Ga0496100_0218318 3300048903 Bacteria 1398
102 Ga0496107_0021357 3300048910 Bacteria 4575
103 Ga0496111_0012797 3300048914 Bacteria 5692
104 Ga0496113_0056013 3300048916 Bacteria 2958
105 Ga0496116_0003434 3300048919 Bacteria 15658
106 Ga0496116_0039086 3300048919 Bacteria 3285
107 Ga0496116_0176282 3300048919 Bacteria 1151
108 Ga0496117_0000083 3300048920 Bacteria 218945
109 Ga0496117_0011171 3300048920 Bacteria 8068
110 Ga0496117_0066177 3300048920 Bacteria 2452
111 Ga0496118_0002038 3300048921 Bacteria 28553
112 Ga0496118_0069206 3300048921 Bacteria 2558
113 Ga0496118_0089810 3300048921 Bacteria 2120
114 Ga0496119_0006870 3300048922 Bacteria 10397
115 Ga0496119_0043848 3300048922 Bacteria 2822
116 Ga0496119_0046206 3300048922 Bacteria 2721
117 Ga0496120_0000030 3300048923 Bacteria 226066
118 Ga0496120_0163259 3300048923 Bacteria 1108
119 Ga0496121_0000174 3300048924 Bacteria 143186
120 Ga0496121_0000235 3300048924 Bacteria 118983
121 Ga0496121_0013423 3300048924 Bacteria 8802
122 Ga0496121_0102240 3300048924 Bacteria 2208
123 Ga0496122_0000367 3300048925 Bacteria 96866
124 Ga0496122_0004084 3300048925 Bacteria 18492
125 Ga0496122_0022635 3300048925 Bacteria 5578
126 Ga0496122_0022956 3300048925 Bacteria 5522
127 Ga0496122_0069034 3300048925 Bacteria 2533
128 Ga0496123_0000052 3300048926 Bacteria 236409
129 Ga0496123_0002905 3300048926 Bacteria 20054
130 Ga0496123_0008554 3300048926 Bacteria 9382
131 Ga0496123_0015770 3300048926 Bacteria 6175
132 Ga0496123_0105661 3300048926 Bacteria 1624
133 Ga0496124_0004202 3300048927 Bacteria 16954
134 Ga0496124_0007476 3300048927 Bacteria 11605
135 Ga0496124_0007956 3300048927 Bacteria 11158
136 Ga0496124_0071464 3300048927 Bacteria 2876
137 Ga0496124_0075727 3300048927 Bacteria 2779
138 Ga0496124_0148988 3300048927 Bacteria 1838
139 Ga0496124_0173652 3300048927 Bacteria 1666
140 Ga0496125_0013451 3300048928 Bacteria 8040
141 Ga0496125_0021702 3300048928 Bacteria 5978
142 Ga0496125_0069653 3300048928 Bacteria 2758
143 Ga0496126_0014134 3300048929 Bacteria 8081
144 Ga0496126_0117641 3300048929 Bacteria 2308
145 Ga0501032_0034394 3300049569 Bacteria 3470
146 Ga0501033_0000351 3300049570 Bacteria 43920
147 Ga0501034_0019886 3300049571 Bacteria 6860
148 Ga0501280_000644 3300049776 Bacteria 7856
149 Ga0501035_0000263 3300049822 Bacteria 62255
150 nmdc:mga03n38_26544_c1 3300050490 Bacteria 2393
151 nmdc:mga03n38_678_c1 3300050490 Bacteria 8855
152 nmdc:mga00v17_22_c1 3300050491 Bacteria 108510
153 nmdc:mga00v17_35896_c1 3300050491 Bacteria 2953
154 nmdc:mga00v17_68_c1 3300050491 Bacteria 62705
155 nmdc:mga0yw44_29295_c1 3300050492 Bacteria 3177
156 nmdc:mga0yw44_307728_c1 3300050492 Bacteria 1063
157 nmdc:mga0yw44_447207_c1 3300050492 Bacteria 876
158 nmdc:mga0k408_23486_c1 3300050493 Bacteria 3479
159 nmdc:mga0k408_50130_c1 3300050493 Bacteria 2417
160 nmdc:mga06z11_11302_c1 3300050494 Bacteria 3846
161 nmdc:mga06z11_2367_c1 3300050494 Bacteria 7176
162 nmdc:mga07m45_17523_c1 3300050496 Bacteria 3848
163 nmdc:mga07m45_201890_c1 3300050496 Bacteria 1157
164 nmdc:mga07m45_27648_c1 3300050496 Bacteria 3127
165 nmdc:mga07m45_370925_c1 3300050496 Bacteria 831
166 nmdc:mga07m45_85240_c1 3300050496 Bacteria 1807
167 nmdc:mga0sz30_13044_c1 3300050516 Bacteria 3246
168 nmdc:mga0sz30_728_c1 3300050516 Bacteria 12087
169 Ga0500618_000402 3300053125 Bacteria 29508
170 Ga0500658_0000280 3300053134 Bacteria 23185
171 Ga0500559_0002900 3300053136 Bacteria 8634
172 Ga0500559_0067144 3300053136 Bacteria 1610
173 Ga0500561_0000041 3300053137 Bacteria 26065
174 Ga0500573_0000633 3300053140 Bacteria 15485
175 Ga0500573_0017702 3300053140 Bacteria 4058
176 2510839119 2510461069 Bacteria 5505000
177 2554244278 2554235003 Bacteria 5877155
178 2559297917 2558860242 Bacteria 5568029
179 2561467821 2558860983 Bacteria 4133860
180 2600373873 2600254933 Bacteria 4750527
181 2601612944 2600255279 Bacteria 5605316
182 2601748490 2600255308 Bacteria 5611129
183 2643811110 2643221558 Bacteria 5460675
184 2644049704 2643221607 Bacteria 6314006
185 2644207990 2643221637 Bacteria 5345260
186 2644299872 2643221653 Bacteria 4569637
187 2644481985 2643221686 Bacteria 6310811
188 2644497716 2643221689 Bacteria 6042950
189 2644522454 2643221693 Bacteria 5513853
190 2644651392 2643221718 Bacteria 5345506
191 2644658099 2643221719 Bacteria 4568197
192 2738805765 2738541293 Bacteria 7065685
193 2738947948 2738541317 Bacteria 5340176
194 2739034511 2738541333 Bacteria 7106503
195 2793365029 2791355267 Bacteria 7222458
196 2806049040 2802429633 Bacteria 7341974
197 2806078063 2802429637 Bacteria 7067217
198 2808989719 2808606387 Bacteria 5697198
199 2819244658 2818991272 Bacteria 4622173
200 2819560476 2818991439 Bacteria 6907412
201 2819689116 2818991461 Bacteria 7026071
202 2838035410 2838029111 Bacteria 6603031
203 2838740181 2838736955 Bacteria 5760694
204 2841843694 2841840854 Bacteria 5761912
205 2841846481 2841840854 Bacteria 5761912
206 2842143414 2842140634 Bacteria 5759631
207 2842146264 2842140634 Bacteria 5759631
208 2842219615 2842217011 Bacteria 7497767
209 2842480142 2842475841 Bacteria 6603183
210 2842508022 2842502639 Bacteria 6604161
211 2894821881 2894817345 Bacteria 4892941
212 2899847988 2899845264 Bacteria 5672268
213 2913312843 2913308742 Bacteria 5350706
214 2926764873 2926760298 Bacteria 5505990
215 2929143762 2929138655 Bacteria 5810547
216 2933596914 2933594066 Bacteria 5594265
217 2979090018 2979089926 Bacteria 5670289
218 2979095555 2979095461 Bacteria 5669583
219 2979101573 2979100975 Bacteria 5423623
220 2984510476 2984509177 Bacteria 5274802
221 2984518818 2984518228 Bacteria 5277463
222 2984538827 2984537506 Bacteria 5277481
223 2984605522 2984601300 Bacteria 5455244
224 2989351168 2989349275 Bacteria 6349068
225 2989773285 2989771324 Bacteria 5605128
226 2989780087 2989776772 Bacteria 4843317
227 639645329 639633055 Bacteria 7751309
228 650842356 650716007 Bacteria 5573770
229 8005249228 8005246636 Bacteria 4933972
230 8005662542 8005658619 Bacteria 4500593
231 8018154109 8018150411 Bacteria 5549903
232 8054464387 8054460903 Bacteria 4872905
233 8056875869 8056875544 Bacteria 4355797
234 rootH1_10150250
235 JGI25158J39367_1000002
236 JGI25152J39213_1000254
237 JGI25152J39213_1003529
238 JGI25159J45721_1000057
239 JGI25151J46595_10008600
240 JGI25153J46596_10000440
241 rootH2_10273541
242 rootL2_10364454
243 rootH1_10158016
244 JGI25160J50197_1000070
245 JGI25161J50226_1000026
246 Ga0055526_1013734
247 Ga0055524_1000837
248 Ga0055528_1000039
249 Ga0055528_1001643
250 Ga0055528_1001982
251 Ga0055540_1000626
252 Ga0055540_1002900
253 Ga0055543_1000085
254 Ga0065165_1001454
255 Ga0065165_1005545
256 Ga0065165_1009427
257 Ga0065704_10082808
258 Ga0070670_100000925
259 Ga0070668_100697192
260 Ga0070663_100123933
261 Ga0068853_100259189
262 Ga0070665_100012173
263 Ga0070665_100086821
264 Ga0075368_10006286
265 Ga0075364_10053358
266 Ga0075367_10005948
267 Ga0075369_10002670
268 Ga0075366_10025537
269 Ga0075366_10032818
270 Ga0075370_10098077
271 Ga0099826_10000076
272 Ga0105244_10093818
273 Ga0105243_10278115
274 Ga0157373_10017173
275 Ga0157371_10000005
276 Ga0157371_10080269
277 Ga0157370_10002453
278 Ga0157370_10037404
279 Ga0157370_10050783
280 Ga0157369_10023054
281 Ga0209436_100016
282 Ga0207425_1001413
283 Ga0209129_1000092
284 Ga0209129_1000166
285 Ga0209673_1000161
286 Ga0209673_1000165
287 Ga0209673_1001595
288 Ga0209130_1000073
289 Ga0209130_1002741
290 Ga0209130_1026939
291 Ga0209025_1000336
292 Ga0209025_1002231
293 Ga0209564_1002104
294 Ga0209564_1014012
295 Ga0209758_1001073
296 Ga0209758_1018775
297 Ga0209256_1000144
298 Ga0209256_1003253
299 Ga0207426_1000140
300 Ga0209051_1000664
301 Ga0209051_1019972
302 Ga0209051_1030066
303 Ga0209051_1043124
304 Ga0209257_1006258
305 Ga0209257_1022812
306 Ga0207694_10737079
307 Ga0207650_10015297
308 Ga0207709_10165151
309 Ga0207668_10460326
310 Ga0207668_10495340
311 Ga0207639_10202003
312 Ga0207678_10210770
313 Ga0209371_1000012
314 Ga0209282_1000039
315 Ga0209813_10005280
316 Ga0268266_10010083
317 Ga0268266_10012106
318 Ga0307515_10000017
319 Ga0268256_1000013
320 Ga0307513_10005235
321 Ga0307405_10143584
322 Ga0400483_091700
323 Ga0400483_236881
324 Ga0451802_0120499
325 Ga0451837_1654926
326 Ga0451841_0771765
327 Ga0451845_0426393
328 Ga0451849_0259573
329 Ga0451851_0308337
330 Ga0451843_0292514
331 Ga0451855_0342524
332 Ga0495606_0149383
333 Ga0495654_0001447
334 Ga0496100_0218318
335 Ga0496107_0021357
336 Ga0496111_0012797
337 Ga0496113_0056013
338 Ga0496116_0003434
339 Ga0496116_0039086
340 Ga0496116_0176282
341 Ga0496117_0000083
342 Ga0496117_0011171
343 Ga0496117_0066177
344 Ga0496118_0002038
345 Ga0496118_0069206
346 Ga0496118_0089810
347 Ga0496119_0006870
348 Ga0496119_0043848
349 Ga0496119_0046206
350 Ga0496120_0000030
351 Ga0496120_0163259
352 Ga0496121_0000174
353 Ga0496121_0000235
354 Ga0496121_0013423
355 Ga0496121_0102240
356 Ga0496122_0000367
357 Ga0496122_0004084
358 Ga0496122_0022635
359 Ga0496122_0022956
360 Ga0496122_0069034
361 Ga0496123_0000052
362 Ga0496123_0002905
363 Ga0496123_0008554
364 Ga0496123_0015770
365 Ga0496123_0105661
366 Ga0496124_0004202
367 Ga0496124_0007476
368 Ga0496124_0007956
369 Ga0496124_0071464
370 Ga0496124_0075727
371 Ga0496124_0148988
372 Ga0496124_0173652
373 Ga0496125_0013451
374 Ga0496125_0021702
375 Ga0496125_0069653
376 Ga0496126_0014134
377 Ga0496126_0117641
378 Ga0501032_0034394
379 Ga0501033_0000351
380 Ga0501034_0019886
381 Ga0501280_000644
382 Ga0501035_0000263
383 nmdc:mga03n38_26544_c1
384 nmdc:mga03n38_678_c1
385 nmdc:mga00v17_22_c1
386 nmdc:mga00v17_35896_c1
387 nmdc:mga00v17_68_c1
388 nmdc:mga0yw44_29295_c1
389 nmdc:mga0yw44_307728_c1
390 nmdc:mga0yw44_447207_c1
391 nmdc:mga0k408_23486_c1
392 nmdc:mga0k408_50130_c1
393 nmdc:mga06z11_11302_c1
394 nmdc:mga06z11_2367_c1
395 nmdc:mga07m45_17523_c1
396 nmdc:mga07m45_201890_c1
397 nmdc:mga07m45_27648_c1
398 nmdc:mga07m45_370925_c1
399 nmdc:mga07m45_85240_c1
400 nmdc:mga0sz30_13044_c1
401 nmdc:mga0sz30_728_c1
402 Ga0500618_000402
403 Ga0500658_0000280
404 Ga0500559_0002900
405 Ga0500559_0067144
406 Ga0500561_0000041
407 Ga0500573_0000633
408 Ga0500573_0017702
409 2510839119
410 2554244278
411 2559297917
412 2561467821
413 2600373873
414 2601612944
415 2601748490
416 2643811110
417 2644049704
418 2644207990
419 2644299872
420 2644481985
421 2644497716
422 2644522454
423 2644651392
424 2644658099
425 2738805765
426 2738947948
427 2739034511
428 2793365029
429 2806049040
430 2806078063
431 2808989719
432 2819244658
433 2819560476
434 2819689116
435 2838035410
436 2838740181
437 2841843694
438 2841846481
439 2842143414
440 2842146264
441 2842219615
442 2842480142
443 2842508022
444 2894821881
445 2899847988
446 2913312843
447 2926764873
448 2929143762
449 2933596914
450 2979090018
451 2979095555
452 2979101573
453 2984510476
454 2984518818
455 2984538827
456 2984605522
457 2989351168
458 2989773285
459 2989780087
460 639645329
461 650842356
462 8005249228
463 8005662542
464 8018154109
465 8054464387
466 8056875869

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

92

237

0.85

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

89

257

0.72

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ucf-assembly1.cif.gz_A crystal structure of a small-chain dehydrogenase 0.8394 13 230
3d7l-assembly4.cif.gz_B the crystal structure of the protein lin1944 from listeria innocua . 0.8345 13 227
1sny-assembly1.cif.gz_A-2 carbonyl reductase sniffer of d. melanogaster 0.8316 13 235
3ucf-assembly1.cif.gz_D crystal structure of a small-chain dehydrogenase 0.8301 13 230
3wxb-assembly1.cif.gz_A crystal structure of nadph bound carbonyl reductase from chicken fatty liver 0.8265 6 235
ID Description Score Start End Superfamily
af_F1R2C9_2_262_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8843 13 235 3.40.50.720
af_I1MG92_30_291_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8635 7 235 3.40.50.720
af_Q7Z9I3_1_253_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8509 11 235 3.40.50.720
af_A5WW49_23_278_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8506 14 235 3.40.50.720
3d7lD00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8415 13 227 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A0Q7NZ68-F1-model_v4 C factor 0.9648 6 235 GO:0005737
GO:0016491
AF-A0A1X6ZFN1-F1-model_v4 C-factor 0.9627 13 235 GO:0005737
GO:0016491
AF-A0A1X6Y6E2-F1-model_v4 C-factor 0.9622 13 235 GO:0005737
GO:0016491
AF-A0A4U0RD69-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9622 13 235 GO:0005737
GO:0016491
AF-A0A839XCS3-F1-model_v4 deleted 0.9602 1 153

Map