F347155

General Info

Members Datasets Scaffolds Average Seq Length
234 159 468 283

Family's Representative Sequence

Representative Sequence 3300025297|Ga0209758_1017100|Ga0209758_10171004
Length 318
Sequence MRSPRFPLAVPRRKPGPRVSLLHRLRPWAPAFAGERIVFALPLLALGGAALWASAPAPTTPPATKPRRIVSLNLCADQLVLALADRDQIAGVTRNATDTEMSGEAAKARGLPVLKNSAEQILAIDPDLVVGMPASRSAPMRALKGHHFNLLDLESADTVDQIYASVRQTAVAVGHPERGAALVARMQAALARLGKPGGGKVAAYYQRRGFMTGTGTLIDDLMQRMGLVNLAAKLDKPPLSQLSLEEMVAAQPDYLIVESATDKIADQGTEMLHHPALAGIPRISIPQAWTVCGSPAYVQAAEGMAQQLARFQDRTHAR

Samples

Sample ID Description Type Environment
1 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
2 3300001976 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7 Metagenome Rhizosphere
3 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
4 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
8 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
9 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
10 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
11 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
12 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
13 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
14 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
15 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
16 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
17 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
18 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
19 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
20 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
21 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
22 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
23 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
24 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
33 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
34 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
35 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
36 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
37 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
38 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
41 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
43 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
47 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
48 3300009982 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_189 metaG Metagenome Rhizosphere
49 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
50 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
52 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
53 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
57 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
77 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
78 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
79 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
82 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
83 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
84 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
85 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
86 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
87 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
88 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
89 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
90 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
91 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
92 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
93 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
94 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
95 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
96 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
97 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
98 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
99 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
100 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
101 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
102 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
103 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
104 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
105 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
106 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
107 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
108 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
109 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
110 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
111 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
112 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
113 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
114 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
115 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
124 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
125 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
127 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
128 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
129 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
130 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
131 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
132 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
133 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
134 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
135 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
136 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
137 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
138 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
139 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
140 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
141 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
142 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
143 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
144 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
145 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
146 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
147 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
148 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
149 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
150 2512564014 Sphingobium sp. AP49 Isolate Rhizosphere
151 2599185354 Sphingomonas sp. NFR15 Isolate Rhizoplane
152 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
153 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
154 2751185897 Sphingomonas panacis DCY99 Isolate Unclassified
155 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified
156 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
157 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere
158 2919709256 Sphingobium xenophagum 4256 Isolate Unclassified
159 8057101203 Sphingomonas lycopersici MMSM20 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.3
Metatranscriptomes 0
Isolates 4.7

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 34.19
Nodule 1.28
Rhizoplane 0.85
Rhizosphere 55.98
Stem 0
Stem Tuber 0
Unclassified 0.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0209758_1017100 3300025297 Bacteria 3636
2 JGI24752J21851_1000124 3300001976 Bacteria 10538
3 JGI25152J39213_1015716 3300002773 Bacteria 1483
4 JGI25150J39212_1000288 3300002774 Bacteria 26051
5 JGI25153J46596_10000028 3300003215 Bacteria 209842
6 rootH2_10061522 3300003320 Bacteria 1801
7 Ga0055526_1004603 3300003771 Bacteria 8224
8 Ga0055537_1009210 3300003773 Bacteria 2200
9 Ga0055536_1000122 3300003781 Bacteria 66977
10 Ga0055536_1004222 3300003781 Bacteria 7419
11 Ga0055536_1013310 3300003781 Bacteria 2982
12 Ga0055534_1012402 3300003784 Bacteria 1686
13 Ga0055530_10000137 3300003791 Bacteria 64770
14 Ga0055530_10003629 3300003791 Bacteria 8661
15 Ga0055540_1004355 3300003792 Bacteria 6423
16 Ga0055531_10001890 3300003794 Bacteria 14669
17 Ga0055531_10004584 3300003794 Bacteria 8338
18 Ga0055531_10035692 3300003794 Bacteria 1550
19 Ga0055531_10035706 3300003794 Bacteria 1550
20 Ga0065165_1000840 3300005262 Bacteria 40310
21 Ga0065707_10098659 3300005295 Bacteria 3068
22 Ga0070670_100000014 3300005331 Bacteria 234648
23 Ga0070670_100103854 3300005331 Bacteria 2448
24 Ga0070680_100235602 3300005336 Bacteria 1546
25 Ga0070660_100068899 3300005339 Bacteria 2758
26 Ga0070661_100167971 3300005344 Bacteria 1665
27 Ga0070668_100047304 3300005347 Bacteria 3307
28 Ga0070669_100081319 3300005353 Bacteria 2413
29 Ga0070671_100143259 3300005355 Bacteria 2017
30 Ga0070667_100000912 3300005367 Bacteria 27324
31 Ga0070667_100002166 3300005367 Bacteria 17295
32 Ga0070667_100059931 3300005367 Bacteria 3221
33 Ga0070681_10373350 3300005458 Bacteria 1337
34 Ga0068855_100000377 3300005563 Bacteria 55242
35 Ga0068854_100001570 3300005578 Bacteria 13878
36 Ga0068854_100383396 3300005578 Bacteria 1159
37 Ga0068856_100057027 3300005614 Bacteria 3856
38 Ga0068859_100063849 3300005617 Bacteria 3714
39 Ga0068864_100000021 3300005618 Bacteria 262378
40 Ga0068863_100000009 3300005841 Bacteria 250538
41 Ga0068863_100003695 3300005841 Bacteria 15125
42 Ga0068860_100000342 3300005843 Bacteria 62993
43 Ga0068862_100000017 3300005844 Bacteria 247616
44 Ga0068862_100002799 3300005844 Bacteria 15279
45 Ga0068862_100217577 3300005844 Bacteria 1728
46 Ga0075368_10008570 3300006042 Bacteria 3647
47 Ga0075363_100004584 3300006048 Bacteria 6064
48 Ga0075362_10011252 3300006177 Bacteria 3521
49 Ga0075367_10002746 3300006178 Bacteria 8141
50 Ga0075367_10032226 3300006178 Bacteria 3014
51 Ga0075369_10014366 3300006186 Bacteria 3162
52 Ga0075370_10002709 3300006353 Bacteria 8290
53 Ga0075370_10037754 3300006353 Bacteria 2716
54 Ga0075370_10125855 3300006353 Bacteria 1494
55 Ga0075428_100081202 3300006844 Bacteria 3538
56 Ga0075429_100025421 3300006880 Bacteria 5139
57 Ga0075429_100156258 3300006880 Bacteria 1997
58 Ga0075429_100228171 3300006880 Unclassified 1631
59 Ga0097620_100063849 3300006931 Bacteria 3714
60 Ga0079104_1010302 3300006946 Bacteria 3091
61 Ga0079104_1011463 3300006946 Bacteria 2849
62 Ga0105251_10000079 3300009011 Bacteria 92478
63 Ga0105240_10003584 3300009093 Bacteria 24088
64 Ga0114129_10017609 3300009147 Bacteria 10169
65 Ga0105237_10529210 3300009545 Bacteria 1185
66 Ga0105249_10000597 3300009553 Bacteria 32867
67 Ga0105147_101122 3300009982 Bacteria 2136
68 Ga0157379_10031345 3300014968 Bacteria 4735
69 Ga0157379_10048571 3300014968 Bacteria 3788
70 Ga0209147_101446 3300025229 Bacteria 8586
71 Ga0207425_1000005 3300025245 Bacteria 900502
72 Ga0209129_1000228 3300025258 Bacteria 63465
73 Ga0209565_1000180 3300025263 Bacteria 78672
74 Ga0209565_1016715 3300025263 Bacteria 1626
75 Ga0209675_1000198 3300025291 Bacteria 64334
76 Ga0209676_1000045 3300025292 Bacteria 412331
77 Ga0209676_1000211 3300025292 Bacteria 129654
78 Ga0209676_1000972 3300025292 Bacteria 34519
79 Ga0209676_1008039 3300025292 Bacteria 4799
80 Ga0209025_1000296 3300025294 Bacteria 111440
81 Ga0209564_1000680 3300025295 Bacteria 50194
82 Ga0209564_1024149 3300025295 Bacteria 2085
83 Ga0209758_1000002 3300025297 Bacteria 1400310
84 Ga0209050_1000001 3300025298 Bacteria 3563507
85 Ga0209050_1000047 3300025298 Bacteria 380561
86 Ga0209050_1001924 3300025298 Bacteria 19785
87 Ga0209050_1012063 3300025298 Bacteria 4014
88 Ga0209050_1014027 3300025298 Bacteria 3494
89 Ga0209051_1000193 3300025303 Bacteria 108391
90 Ga0209257_1000076 3300025304 Bacteria 324617
91 Ga0209257_1000404 3300025304 Bacteria 83872
92 Ga0209257_1000874 3300025304 Bacteria 42712
93 Ga0209257_1000917 3300025304 Bacteria 41014
94 Ga0207713_1001423 3300025735 Bacteria 19174
95 Ga0207695_10017352 3300025913 Bacteria 8377
96 Ga0207660_10199302 3300025917 Bacteria 1563
97 Ga0207657_10115647 3300025919 Bacteria 2210
98 Ga0207649_10221851 3300025920 Bacteria 1347
99 Ga0207681_10094527 3300025923 Bacteria 2142
100 Ga0207650_10000095 3300025925 Bacteria 116052
101 Ga0207644_10177957 3300025931 Bacteria 1665
102 Ga0207667_10000537 3300025949 Bacteria 50070
103 Ga0207712_10000536 3300025961 Bacteria 30969
104 Ga0207668_10000925 3300025972 Bacteria 17635
105 Ga0207640_10016615 3300025981 Bacteria 4286
106 Ga0207640_10328900 3300025981 Bacteria 1220
107 Ga0207658_10000201 3300025986 Bacteria 62567
108 Ga0207658_10000775 3300025986 Bacteria 27323
109 Ga0207641_10000017 3300026088 Bacteria 299119
110 Ga0207641_10001222 3300026088 Bacteria 25732
111 Ga0207676_10000037 3300026095 Bacteria 180826
112 Ga0209281_1023249 3300027111 Bacteria 1178
113 Ga0209813_10000061 3300027866 Bacteria 43981
114 Ga0209813_10000196 3300027866 Bacteria 18794
115 Ga0207428_10077232 3300027907 Bacteria 2607
116 Ga0268265_10000025 3300028380 Bacteria 250207
117 Ga0268265_10015820 3300028380 Bacteria 5172
118 Ga0268265_10095824 3300028380 Bacteria 2384
119 Ga0268264_10000389 3300028381 Bacteria 63172
120 Ga0307406_10204262 3300031901 Bacteria 1457
121 Ga0307412_10014433 3300031911 Bacteria 4660
122 Ga0307412_10021027 3300031911 Bacteria 3981
123 Ga0307412_10030115 3300031911 Bacteria 3413
124 Ga0307414_10000112 3300032004 Bacteria 57809
125 Ga0307414_10010332 3300032004 Bacteria 5410
126 Ga0307414_10024353 3300032004 Bacteria 3859
127 Ga0307411_10080339 3300032005 Bacteria 2242
128 Ga0495617_002332 3300046452 Bacteria 7627
129 Ga0495617_012551 3300046452 Bacteria 2889
130 Ga0495627_000024 3300046453 Bacteria 250480
131 Ga0495627_000456 3300046453 Bacteria 35514
132 Ga0495638_0000014 3300046460 Bacteria 417060
133 Ga0495596_0001790 3300046500 Bacteria 11969
134 Ga0495583_0000072 3300046506 Bacteria 182057
135 Ga0495583_0028016 3300046506 Bacteria 2775
136 Ga0495610_0000301 3300046512 Bacteria 52032
137 Ga0495610_0003482 3300046512 Bacteria 12245
138 Ga0495610_0011078 3300046512 Bacteria 5538
139 Ga0495616_0000015 3300046513 Bacteria 187751
140 Ga0495632_0001119 3300046519 Bacteria 22987
141 Ga0495643_0000093 3300046522 Bacteria 152412
142 Ga0495643_0092582 3300046522 Bacteria 1558
143 Ga0495648_0000021 3300046524 Bacteria 246945
144 Ga0495648_0010743 3300046524 Bacteria 6951
145 Ga0495654_0009200 3300046530 Bacteria 5417
146 Ga0495654_0010310 3300046530 Bacteria 5086
147 Ga0495609_0007243 3300046538 Bacteria 5563
148 Ga0495633_0011020 3300046558 Bacteria 4904
149 Ga0495633_0044299 3300046558 Bacteria 2109
150 Ga0495633_0083045 3300046558 Bacteria 1490
151 Ga0495668_0000024 3300046616 Bacteria 359469
152 Ga0495668_0001490 3300046616 Bacteria 22423
153 Ga0495625_0006793 3300046660 Bacteria 10110
154 Ga0495625_0014182 3300046660 Bacteria 6373
155 Ga0495625_0217345 3300046660 Bacteria 1254
156 Ga0495671_0000028 3300046692 Bacteria 234938
157 Ga0495673_0000058 3300047469 Bacteria 235044
158 Ga0495673_0017222 3300047469 Bacteria 3676
159 Ga0495681_0000056 3300047470 Bacteria 103692
160 Ga0495686_0019165 3300047472 Bacteria 4576
161 Ga0495686_0104790 3300047472 Bacteria 1702
162 Ga0495626_0004793 3300048091 Bacteria 8164
163 Ga0496115_0010547 3300048918 Bacteria 6909
164 Ga0496116_0000116 3300048919 Bacteria 172374
165 Ga0496117_0011861 3300048920 Bacteria 7754
166 Ga0496117_0034973 3300048920 Bacteria 3779
167 Ga0496117_0068251 3300048920 Bacteria 2401
168 Ga0496118_0000216 3300048921 Bacteria 100502
169 Ga0496122_0000745 3300048925 Bacteria 63497
170 Ga0496122_0079178 3300048925 Bacteria 2298
171 Ga0496123_0002386 3300048926 Bacteria 23531
172 Ga0496124_0003410 3300048927 Bacteria 19495
173 Ga0496125_0008850 3300048928 Bacteria 10464
174 Ga0496125_0286681 3300048928 Bacteria 1016
175 Ga0496126_0002818 3300048929 Bacteria 22809
176 Ga0495678_022534 3300049459 Bacteria 2752
177 Ga0501032_0009182 3300049569 Bacteria 7168
178 Ga0501033_0002144 3300049570 Bacteria 17070
179 Ga0501033_0040441 3300049570 Bacteria 3480
180 Ga0501034_0018815 3300049571 Bacteria 7079
181 Ga0501034_0206485 3300049571 Bacteria 1920
182 Ga0501036_0030230 3300049572 Bacteria 4577
183 Ga0501036_0074740 3300049572 Bacteria 2866
184 Ga0501037_0032598 3300049573 Bacteria 3847
185 Ga0501037_0084470 3300049573 Bacteria 2299
186 Ga0501039_0003879 3300049575 Bacteria 11223
187 Ga0501043_0028385 3300049579 Bacteria 4392
188 Ga0501047_0210409 3300049581 Bacteria 1803
189 Ga0501223_000039 3300049663 Bacteria 45537
190 Ga0501249_000437 3300049679 Bacteria 10390
191 Ga0501035_0003659 3300049822 Bacteria 14662
192 Ga0501035_0161148 3300049822 Bacteria 1941
193 Ga0501044_0000995 3300049823 Bacteria 34093
194 Ga0501044_0033594 3300049823 Bacteria 5389
195 nmdc:mga03683_4698_c1 3300050489 Bacteria 4559
196 nmdc:mga03n38_59832_c1 3300050490 Bacteria 1730
197 nmdc:mga00v17_23087_c1 3300050491 Bacteria 3596
198 nmdc:mga0k408_28126_c1 3300050493 Bacteria 3196
199 nmdc:mga06z11_475_c1 3300050494 Bacteria 14837
200 nmdc:mga06z11_78_c1 3300050494 Bacteria 40825
201 nmdc:mga04h51_132_c1 3300050495 Bacteria 21782
202 nmdc:mga04h51_41_c1 3300050495 Bacteria 43980
203 nmdc:mga07m45_2280_c1 3300050496 Bacteria 8965
204 nmdc:mga07m45_2966_c1 3300050496 Bacteria 8069
205 nmdc:mga07m45_47304_c1 3300050496 Bacteria 2418
206 nmdc:mga05p37_35600_c1 3300050507 Bacteria 6106
207 nmdc:mga09592_210110_c1 3300050508 Bacteria 1686
208 nmdc:mga0sz30_854_c1 3300050516 Bacteria 10985
209 Ga0500643_014215 3300053087 Bacteria 2776
210 Ga0500592_000047 3300053116 Bacteria 36285
211 Ga0500592_000068 3300053116 Bacteria 27176
212 Ga0500595_019363 3300053119 Bacteria 2471
213 Ga0500607_000021 3300053121 Bacteria 99974
214 Ga0500658_0049953 3300053134 Bacteria 1706
215 Ga0500559_0000887 3300053136 Bacteria 19149
216 Ga0500568_0013909 3300053139 Bacteria 3653
217 Ga0500568_0095308 3300053139 Bacteria 1120
218 Ga0500604_0071279 3300053151 Bacteria 1108
219 Ga0500622_0002087 3300053156 Bacteria 14883
220 Ga0500627_0000008 3300053158 Bacteria 161914
221 Ga0500627_0000410 3300053158 Bacteria 11568
222 Ga0500637_0001437 3300053178 Bacteria 10142
223 Ga0500645_009844 3300053730 Bacteria 3195
224 2511128300 2510917021 Bacteria 5705459
225 2512645310 2512564014 Bacteria 4639632
226 2600200620 2599185354 Bacteria 4398675
227 2643833673 2643221563 Bacteria 4726935
228 2644054600 2643221608 Bacteria 4724829
229 2753763600 2751185897 Bacteria 5322941
230 2819551773 2818991438 Bacteria 5793701
231 2852656574 2852653556 Bacteria 4050083
232 2852681912 2852680915 Bacteria 4100189
233 2919712083 2919709256 Bacteria 4318106
234 8057103983 8057101203 Bacteria 5034064
235 Ga0209758_1017100
236 JGI24752J21851_1000124
237 JGI25152J39213_1015716
238 JGI25150J39212_1000288
239 JGI25153J46596_10000028
240 rootH2_10061522
241 Ga0055526_1004603
242 Ga0055537_1009210
243 Ga0055536_1000122
244 Ga0055536_1004222
245 Ga0055536_1013310
246 Ga0055534_1012402
247 Ga0055530_10000137
248 Ga0055530_10003629
249 Ga0055540_1004355
250 Ga0055531_10001890
251 Ga0055531_10004584
252 Ga0055531_10035692
253 Ga0055531_10035706
254 Ga0065165_1000840
255 Ga0065707_10098659
256 Ga0070670_100000014
257 Ga0070670_100103854
258 Ga0070680_100235602
259 Ga0070660_100068899
260 Ga0070661_100167971
261 Ga0070668_100047304
262 Ga0070669_100081319
263 Ga0070671_100143259
264 Ga0070667_100000912
265 Ga0070667_100002166
266 Ga0070667_100059931
267 Ga0070681_10373350
268 Ga0068855_100000377
269 Ga0068854_100001570
270 Ga0068854_100383396
271 Ga0068856_100057027
272 Ga0068859_100063849
273 Ga0068864_100000021
274 Ga0068863_100000009
275 Ga0068863_100003695
276 Ga0068860_100000342
277 Ga0068862_100000017
278 Ga0068862_100002799
279 Ga0068862_100217577
280 Ga0075368_10008570
281 Ga0075363_100004584
282 Ga0075362_10011252
283 Ga0075367_10002746
284 Ga0075367_10032226
285 Ga0075369_10014366
286 Ga0075370_10002709
287 Ga0075370_10037754
288 Ga0075370_10125855
289 Ga0075428_100081202
290 Ga0075429_100025421
291 Ga0075429_100156258
292 Ga0075429_100228171
293 Ga0097620_100063849
294 Ga0079104_1010302
295 Ga0079104_1011463
296 Ga0105251_10000079
297 Ga0105240_10003584
298 Ga0114129_10017609
299 Ga0105237_10529210
300 Ga0105249_10000597
301 Ga0105147_101122
302 Ga0157379_10031345
303 Ga0157379_10048571
304 Ga0209147_101446
305 Ga0207425_1000005
306 Ga0209129_1000228
307 Ga0209565_1000180
308 Ga0209565_1016715
309 Ga0209675_1000198
310 Ga0209676_1000045
311 Ga0209676_1000211
312 Ga0209676_1000972
313 Ga0209676_1008039
314 Ga0209025_1000296
315 Ga0209564_1000680
316 Ga0209564_1024149
317 Ga0209758_1000002
318 Ga0209050_1000001
319 Ga0209050_1000047
320 Ga0209050_1001924
321 Ga0209050_1012063
322 Ga0209050_1014027
323 Ga0209051_1000193
324 Ga0209257_1000076
325 Ga0209257_1000404
326 Ga0209257_1000874
327 Ga0209257_1000917
328 Ga0207713_1001423
329 Ga0207695_10017352
330 Ga0207660_10199302
331 Ga0207657_10115647
332 Ga0207649_10221851
333 Ga0207681_10094527
334 Ga0207650_10000095
335 Ga0207644_10177957
336 Ga0207667_10000537
337 Ga0207712_10000536
338 Ga0207668_10000925
339 Ga0207640_10016615
340 Ga0207640_10328900
341 Ga0207658_10000201
342 Ga0207658_10000775
343 Ga0207641_10000017
344 Ga0207641_10001222
345 Ga0207676_10000037
346 Ga0209281_1023249
347 Ga0209813_10000061
348 Ga0209813_10000196
349 Ga0207428_10077232
350 Ga0268265_10000025
351 Ga0268265_10015820
352 Ga0268265_10095824
353 Ga0268264_10000389
354 Ga0307406_10204262
355 Ga0307412_10014433
356 Ga0307412_10021027
357 Ga0307412_10030115
358 Ga0307414_10000112
359 Ga0307414_10010332
360 Ga0307414_10024353
361 Ga0307411_10080339
362 Ga0495617_002332
363 Ga0495617_012551
364 Ga0495627_000024
365 Ga0495627_000456
366 Ga0495638_0000014
367 Ga0495596_0001790
368 Ga0495583_0000072
369 Ga0495583_0028016
370 Ga0495610_0000301
371 Ga0495610_0003482
372 Ga0495610_0011078
373 Ga0495616_0000015
374 Ga0495632_0001119
375 Ga0495643_0000093
376 Ga0495643_0092582
377 Ga0495648_0000021
378 Ga0495648_0010743
379 Ga0495654_0009200
380 Ga0495654_0010310
381 Ga0495609_0007243
382 Ga0495633_0011020
383 Ga0495633_0044299
384 Ga0495633_0083045
385 Ga0495668_0000024
386 Ga0495668_0001490
387 Ga0495625_0006793
388 Ga0495625_0014182
389 Ga0495625_0217345
390 Ga0495671_0000028
391 Ga0495673_0000058
392 Ga0495673_0017222
393 Ga0495681_0000056
394 Ga0495686_0019165
395 Ga0495686_0104790
396 Ga0495626_0004793
397 Ga0496115_0010547
398 Ga0496116_0000116
399 Ga0496117_0011861
400 Ga0496117_0034973
401 Ga0496117_0068251
402 Ga0496118_0000216
403 Ga0496122_0000745
404 Ga0496122_0079178
405 Ga0496123_0002386
406 Ga0496124_0003410
407 Ga0496125_0008850
408 Ga0496125_0286681
409 Ga0496126_0002818
410 Ga0495678_022534
411 Ga0501032_0009182
412 Ga0501033_0002144
413 Ga0501033_0040441
414 Ga0501034_0018815
415 Ga0501034_0206485
416 Ga0501036_0030230
417 Ga0501036_0074740
418 Ga0501037_0032598
419 Ga0501037_0084470
420 Ga0501039_0003879
421 Ga0501043_0028385
422 Ga0501047_0210409
423 Ga0501223_000039
424 Ga0501249_000437
425 Ga0501035_0003659
426 Ga0501035_0161148
427 Ga0501044_0000995
428 Ga0501044_0033594
429 nmdc:mga03683_4698_c1
430 nmdc:mga03n38_59832_c1
431 nmdc:mga00v17_23087_c1
432 nmdc:mga0k408_28126_c1
433 nmdc:mga06z11_475_c1
434 nmdc:mga06z11_78_c1
435 nmdc:mga04h51_132_c1
436 nmdc:mga04h51_41_c1
437 nmdc:mga07m45_2280_c1
438 nmdc:mga07m45_2966_c1
439 nmdc:mga07m45_47304_c1
440 nmdc:mga05p37_35600_c1
441 nmdc:mga09592_210110_c1
442 nmdc:mga0sz30_854_c1
443 Ga0500643_014215
444 Ga0500592_000047
445 Ga0500592_000068
446 Ga0500595_019363
447 Ga0500607_000021
448 Ga0500658_0049953
449 Ga0500559_0000887
450 Ga0500568_0013909
451 Ga0500568_0095308
452 Ga0500604_0071279
453 Ga0500622_0002087
454 Ga0500627_0000008
455 Ga0500627_0000410
456 Ga0500637_0001437
457 Ga0500645_009844
458 2511128300
459 2512645310
460 2600200620
461 2643833673
462 2644054600
463 2753763600
464 2819551773
465 2852656574
466 2852681912
467 2919712083
468 8057103983

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01497

Peripla_BP_2

Periplasmic binding protein

69

283

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2rg7-assembly1.cif.gz_C apo- crystal structure of a periplasmic heme binding protein from shigella dysenteriae 0.7754 39 280
4m7o-assembly1.cif.gz_A the crystal structure of a possible an iron-binding (periplasmic solute-binding) protein from staphylococcus epidermidis atcc 12228. 0.7735 36 280
5mbq-assembly3.cif.gz_C ceue (h227a variant) a periplasmic protein from campylobacter jejuni 0.7599 36 278
5giz-assembly2.cif.gz_B periplasmic heme-binding protein bhut in apo form 0.7538 39 278
4n01-assembly2.cif.gz_B the crystal structure of a periplasmic binding protein from veillonella parvula dsm 2008 0.7518 38 285
ID Description Score Start End Superfamily
3pshA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.8041 37 157 3.40.50.1980
af_Q2G0F6_19_140_3.40.50.1980 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.7987 39 157 3.40.50.1980
5gj1A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.7949 40 157 3.40.50.1980
2rg7D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.7938 39 157 3.40.50.1980
2rg7D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nitrogenase molybdenum iron protein domain 0.7763 39 157 3.40.50.1980
ID Description Score Start End GO Terms
AF-A0A1G5SVG9-F1-model_v4 Iron complex transport system substrate-binding protein 0.9476 36 282 GO:0071281
AF-A0A7W7JYI3-F1-model_v4 Iron complex transport system substrate-binding protein 0.9441 37 282
AF-A0A1X1QTJ3-F1-model_v4 Fe/B12 periplasmic-binding domain-containing protein 0.937 43 278 GO:0071281
AF-A0A1B3MW20-F1-model_v4 Periplasmic binding family protein 0.9351 28 278
AF-A0A1I5G4P6-F1-model_v4 Iron complex transport system substrate-binding protein 0.9311 35 282 GO:0071281

Map