F347248

General Info

Members Datasets Scaffolds Average Seq Length
234 161 468 261

Family's Representative Sequence

Representative Sequence 3300031901|Ga0307406_10070429|Ga0307406_100704291
Length 275
Sequence MSADVSVGTGRVEAAIQKAEAAGRSAFVGYLPVGFPDLETSIQAAITLAENGVDIIELGPPYSDPVMDGSVIQEATTAALANGFKMKDLFTAVRAISAATDVPVLVMTYWNPVFQYGVDRYADDLLAAGGAGLITPDITPEVAGEWIAASERTGLDRVFLAAPTSTDARLDLVVAASTGFVYTVSTMGITGERAELDRAARTLVGRLREHGAKRACVGIGISTAEQIAGVSEYADGAIVGTALVRALRDGGIPALAEVTRTLATGTSSARPVHEN

Samples

Sample ID Description Type Environment
1 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
2 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
3 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
6 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
7 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
8 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
9 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
10 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
11 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
12 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
13 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
14 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
15 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
16 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
17 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
18 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
19 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
20 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
21 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
33 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
34 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
35 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
36 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
37 3300041462 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG Metagenome Rhizoplane
38 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
39 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
40 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
41 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
42 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
43 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
44 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
45 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
46 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
47 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
48 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
49 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
50 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
51 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
52 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
53 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
54 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
55 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
56 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
57 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
58 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
59 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
60 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
61 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
62 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
63 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
64 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
65 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
66 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
67 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
68 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
69 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
70 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
71 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
72 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
73 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
82 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
83 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
84 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
86 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
87 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
88 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
89 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
90 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
91 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
92 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
93 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
94 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
95 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
96 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
97 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
98 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
99 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
100 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
101 2643221546 Microbacterium sp. Root53 Isolate Unclassified
102 2643221553 Microbacterium sp. Root553 Isolate Unclassified
103 2643221566 Microbacterium sp. Root166 Isolate Unclassified
104 2643221575 Microbacterium sp. Root61 Isolate Unclassified
105 2643221597 Microbacterium sp. Root180 Isolate Unclassified
106 2643221619 Agromyces sp. Root81 Isolate Unclassified
107 2643221630 Microbacterium sp. Root322 Isolate Unclassified
108 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
109 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
110 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
111 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
112 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
113 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
114 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
115 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
116 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
117 2808606372 Agromyces sp. 23-23 Isolate Unclassified
118 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
119 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
120 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
121 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
122 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
123 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
124 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
125 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
126 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
127 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
128 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
129 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
130 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
131 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
132 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
133 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
134 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
135 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
136 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
137 2919069694 Microbacterium sp. 1154 Isolate Unclassified
138 2919395869 Microbacterium resistens 2980 Isolate Unclassified
139 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
140 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
141 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
142 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
143 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
144 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
145 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
146 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
147 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
148 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
149 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
150 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
151 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
152 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
153 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
154 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
155 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
156 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
157 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
158 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
159 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
160 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere
161 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 72.22
Metatranscriptomes 0.85
Isolates 26.92

Biome Distribution

Category Percentage (%)
Aerial Root 0.85
Bulb 0
Endosphere 10.68
Nodule 0
Rhizoplane 5.98
Rhizosphere 44.44
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307406_10070429 3300031901 Bacteria 2290
2 JGI25154J39366_1002434 3300002738 Bacteria 4839
3 Ga0006562J51391_1085532 3300003578 Bacteria 5820
4 Ga0006562J51391_1085535 3300003578 Bacteria 3850
5 Ga0070660_100187856 3300005339 Bacteria 1673
6 Ga0070671_100175306 3300005355 Bacteria 1814
7 Ga0070659_100146736 3300005366 Bacteria 1923
8 Ga0070667_100032789 3300005367 Bacteria 4335
9 Ga0070663_100442646 3300005455 Bacteria 1070
10 Ga0070665_100104686 3300005548 Bacteria 2832
11 Ga0075365_10000801 3300006038 Bacteria 12900
12 Ga0075365_10024231 3300006038 Bacteria 3824
13 Ga0075364_10005899 3300006051 Bacteria 7156
14 Ga0075364_10009842 3300006051 Bacteria 5751
15 Ga0075364_10011761 3300006051 Bacteria 5328
16 Ga0075364_10022231 3300006051 Bacteria 4003
17 Ga0075364_10111825 3300006051 Bacteria 1823
18 Ga0075364_10177703 3300006051 Bacteria 1440
19 Ga0075367_10001632 3300006178 Bacteria 9750
20 Ga0105244_10023640 3300009036 Bacteria 3367
21 Ga0105248_10011487 3300009177 Bacteria 9758
22 Ga0157370_10061323 3300013104 Bacteria 3570
23 Ga0157369_10004087 3300013105 Bacteria 17278
24 Ga0163162_10039824 3300013306 Bacteria 4696
25 Ga0157372_10697338 3300013307 Bacteria 1181
26 Ga0157375_10300267 3300013308 Bacteria 1769
27 Ga0209646_1000099 3300025246 Bacteria 180436
28 Ga0207655_1004123 3300025728 Bacteria 10441
29 Ga0207655_1080053 3300025728 Bacteria 1182
30 Ga0207705_10018919 3300025909 Bacteria 4925
31 Ga0207659_10464434 3300025926 Bacteria 1068
32 Ga0207690_10134381 3300025932 Bacteria 1814
33 Ga0207691_10276415 3300025940 Bacteria 1446
34 Ga0207711_10000332 3300025941 Bacteria 50108
35 Ga0207658_10062244 3300025986 Bacteria 2792
36 Ga0207678_10634139 3300026067 Bacteria 938
37 Ga0207641_10382569 3300026088 Bacteria 1348
38 Ga0207675_100238695 3300026118 Bacteria 1756
39 Ga0268266_10034152 3300028379 Bacteria 4325
40 Ga0307515_10265419 3300028794 Bacteria 1446
41 Ga0307405_10159762 3300031731 Bacteria 1595
42 Ga0307406_10001738 3300031901 Bacteria 11937
43 Ga0307406_10005100 3300031901 Bacteria 7169
44 Ga0307406_10033096 3300031901 Bacteria 3161
45 Ga0307414_10031467 3300032004 Bacteria 3481
46 Ga0307414_10043154 3300032004 Bacteria 3070
47 Ga0307414_10090638 3300032004 Bacteria 2270
48 Ga0307415_100107686 3300032126 Bacteria 2060
49 Ga0307415_100244136 3300032126 Bacteria 1455
50 Ga0307415_100422342 3300032126 Bacteria 1145
51 Ga0395901_0040283 3300038443 Bacteria 4838
52 Ga0395901_0064935 3300038443 Bacteria 3800
53 Ga0451806_131985 3300041462 Bacteria 1718
54 Ga0451853_3772554 3300041512 Bacteria 1000
55 Ga0466972_0115858 3300044658 Bacteria 1265
56 Ga0466965_0021459 3300044683 Bacteria 3108
57 Ga0466963_0113605 3300044694 Bacteria 1860
58 Ga0466971_0027786 3300044719 Bacteria 2534
59 Ga0466968_0011321 3300044735 Bacteria 3473
60 Ga0466970_0000039 3300044765 Bacteria 47478
61 Ga0466957_0009856 3300044842 Bacteria 5462
62 Ga0466957_0210870 3300044842 Bacteria 1279
63 Ga0466960_0109678 3300044901 Bacteria 1432
64 Ga0466958_0031180 3300045836 Bacteria 3168
65 Ga0466967_0045997 3300045976 Bacteria 3797
66 Ga0466967_0106352 3300045976 Bacteria 2572
67 Ga0466967_0191551 3300045976 Bacteria 1933
68 Ga0495627_000357 3300046453 Bacteria 42749
69 Ga0495590_0001092 3300046457 Bacteria 11937
70 Ga0495620_0039888 3300046515 Bacteria 2072
71 Ga0495654_0044790 3300046530 Bacteria 2186
72 Ga0495645_0008939 3300046543 Bacteria 6998
73 Ga0495625_0239159 3300046660 Bacteria 1183
74 Ga0495672_0034952 3300047320 Bacteria 3099
75 Ga0496103_0004876 3300048906 Bacteria 8104
76 Ga0496105_0103223 3300048908 Bacteria 2354
77 Ga0496105_0157393 3300048908 Bacteria 1865
78 Ga0496106_0091655 3300048909 Bacteria 2347
79 Ga0496109_0013353 3300048912 Bacteria 7121
80 Ga0496109_0058023 3300048912 Bacteria 3535
81 Ga0496109_0221376 3300048912 Bacteria 1780
82 Ga0496112_0534698 3300048915 Bacteria 1106
83 Ga0496113_0093828 3300048916 Bacteria 2317
84 Ga0496113_0189991 3300048916 Bacteria 1630
85 Ga0496114_0016128 3300048917 Bacteria 6012
86 Ga0496115_0073951 3300048918 Bacteria 2766
87 Ga0496115_0157029 3300048918 Bacteria 1879
88 Ga0496117_0000468 3300048920 Bacteria 67418
89 Ga0496117_0000630 3300048920 Bacteria 57051
90 Ga0496117_0002894 3300048920 Bacteria 20783
91 Ga0496117_0091154 3300048920 Bacteria 1961
92 Ga0496118_0004920 3300048921 Bacteria 15520
93 Ga0496118_0016495 3300048921 Bacteria 6774
94 Ga0496118_0025553 3300048921 Bacteria 5058
95 Ga0496118_0229346 3300048921 Bacteria 1073
96 Ga0496119_0002046 3300048922 Bacteria 22830
97 Ga0496119_0002717 3300048922 Bacteria 19096
98 Ga0496119_0004650 3300048922 Bacteria 13541
99 Ga0496119_0007500 3300048922 Bacteria 9805
100 Ga0496119_0008597 3300048922 Bacteria 8941
101 Ga0496119_0161093 3300048922 Bacteria 1193
102 Ga0496120_0001568 3300048923 Bacteria 26755
103 Ga0496120_0001603 3300048923 Bacteria 26271
104 Ga0496120_0001799 3300048923 Bacteria 24071
105 Ga0496120_0113501 3300048923 Bacteria 1411
106 Ga0496120_0135045 3300048923 Bacteria 1259
107 Ga0496122_0000054 3300048925 Bacteria 259135
108 Ga0496122_0000240 3300048925 Bacteria 123001
109 Ga0496122_0001458 3300048925 Bacteria 38143
110 Ga0496122_0018355 3300048925 Bacteria 6472
111 Ga0496122_0021203 3300048925 Bacteria 5828
112 Ga0496122_0078942 3300048925 Bacteria 2303
113 Ga0496122_0192663 3300048925 Bacteria 1201
114 Ga0496123_0000039 3300048926 Bacteria 259107
115 Ga0496123_0000225 3300048926 Bacteria 115105
116 Ga0496123_0003197 3300048926 Bacteria 18680
117 Ga0496124_0001567 3300048927 Bacteria 33061
118 Ga0496124_0002353 3300048927 Bacteria 24953
119 Ga0496124_0002402 3300048927 Bacteria 24604
120 Ga0496124_0125023 3300048927 Bacteria 2050
121 Ga0496124_0302680 3300048927 Bacteria 1154
122 Ga0496125_0000061 3300048928 Bacteria 262739
123 Ga0496125_0003167 3300048928 Bacteria 20405
124 Ga0496125_0009923 3300048928 Bacteria 9679
125 Ga0496125_0010326 3300048928 Bacteria 9455
126 Ga0496125_0038671 3300048928 Bacteria 4124
127 Ga0496125_0072987 3300048928 Bacteria 2671
128 Ga0496125_0079045 3300048928 Bacteria 2525
129 Ga0496126_0000998 3300048929 Bacteria 48229
130 Ga0496126_0022655 3300048929 Bacteria 6105
131 Ga0496126_0024092 3300048929 Bacteria 5880
132 Ga0496126_0078520 3300048929 Bacteria 2924
133 Ga0496126_0262461 3300048929 Bacteria 1436
134 Ga0496126_0397608 3300048929 Bacteria 1118
135 Ga0501033_0009412 3300049570 Bacteria 7522
136 Ga0501033_0023769 3300049570 Bacteria 4622
137 Ga0501034_0007434 3300049571 Bacteria 11660
138 Ga0501034_0014801 3300049571 Bacteria 8024
139 Ga0501034_0905836 3300049571 Bacteria 769
140 Ga0501037_0031241 3300049573 Bacteria 3932
141 Ga0501038_0002557 3300049574 Bacteria 16962
142 Ga0501038_0059034 3300049574 Bacteria 3287
143 Ga0501038_0071404 3300049574 Bacteria 2945
144 Ga0501042_0000243 3300049578 Bacteria 26410
145 Ga0501043_0020012 3300049579 Bacteria 5253
146 Ga0501046_0040206 3300049580 Bacteria 3738
147 Ga0501047_0000018 3300049581 Bacteria 274180
148 Ga0501068_0089167 3300049584 Bacteria 1901
149 Ga0501070_0000641 3300049586 Bacteria 32171
150 Ga0501070_0033082 3300049586 Bacteria 4325
151 Ga0501083_0000003 3300049744 Bacteria 235949
152 Ga0501035_0837260 3300049822 Bacteria 733
153 Ga0501044_0008050 3300049823 Bacteria 11577
154 Ga0501044_0373168 3300049823 Bacteria 1343
155 nmdc:mga03n38_19130_c1 3300050490 Bacteria 2715
156 nmdc:mga00v17_17644_c1 3300050491 Bacteria 4044
157 nmdc:mga00v17_33023_c1 3300050491 Bacteria 3063
158 nmdc:mga00v17_34210_c1 3300050491 Bacteria 3016
159 nmdc:mga00v17_5267_c1 3300050491 Bacteria 6812
160 nmdc:mga0yw44_2733_c1 3300050492 Bacteria 7628
161 nmdc:mga06z11_103042_c1 3300050494 Bacteria 1569
162 Ga0500556_0000215 3300053104 Bacteria 47104
163 Ga0500562_003807 3300053108 Bacteria 3798
164 Ga0500593_003675 3300053117 Bacteria 5838
165 Ga0500655_004073 3300053133 Bacteria 2632
166 Ga0500568_0000014 3300053139 Bacteria 223550
167 Ga0500590_015507 3300053148 Bacteria 3933
168 Ga0500616_0002060 3300053153 Bacteria 17628
169 Ga0500616_0052646 3300053153 Bacteria 2140
170 Ga0500620_000275 3300053155 Bacteria 9951
171 Ga0466962_0126368 3300061719 Bacteria 1235
172 2588108379 2585428157 Bacteria 3018951
173 2643733704 2643221542 Bacteria 3563959
174 2643752017 2643221546 Bacteria 2910897
175 2643785736 2643221553 Bacteria 3544260
176 2643848403 2643221566 Bacteria 3460379
177 2643885575 2643221575 Bacteria 4022601
178 2643995865 2643221597 Bacteria 3347721
179 2644111177 2643221619 Bacteria 4158469
180 2644170278 2643221630 Bacteria 3601215
181 2644680148 2643221724 Bacteria 3593515
182 2723642006 2721755702 Bacteria 4373124
183 2730229598 2728369380 Bacteria 3620317
184 2747952811 2747842429 Bacteria 3914386
185 2758226249 2757320536 Bacteria 3629334
186 2774380618 2773857758 Bacteria 3592392
187 2774399651 2773857763 Bacteria 4180068
188 2808631304 2808606306 Bacteria 3608896
189 2808885534 2808606368 Bacteria 3174172
190 2808901979 2808606372 Bacteria 4649509
191 2809227391 2808606447 Bacteria 3572005
192 2812322994 2811994872 Bacteria 4121241
193 2821269897 2821268502 Bacteria 3750023
194 2833710827 2833709550 Bacteria 4008291
195 2844855504 2844852863 Bacteria 3849151
196 2852633231 2852632344 Bacteria 3463163
197 2852647238 2852646457 Bacteria 3408613
198 2852665217 2852663356 Bacteria 4090475
199 2857480383 2857479173 Bacteria 2469263
200 2857634030 2857632687 Bacteria 2448521
201 2857720322 2857720070 Bacteria 3189373
202 2857723746 2857723135 Bacteria 4217853
203 2857732614 2857729791 Bacteria 4040535
204 2870630241 2870628048 Bacteria 3696012
205 2870802564 2870801768 Bacteria 2710986
206 2870804627 2870804320 Bacteria 2552467
207 2904512141 2904509784 Bacteria 3520416
208 2906802925 2906799679 Bacteria 4031749
209 2908681049 2908678064 Bacteria 3482747
210 2919072480 2919069694 Bacteria 3622919
211 2919399020 2919395869 Bacteria 3704152
212 2919446243 2919443155 Bacteria 4072969
213 2928091841 2928090899 Bacteria 3158267
214 2928122955 2928121344 Bacteria 3972376
215 2935411356 2935409751 Bacteria 4179611
216 2945971704 2945968032 Bacteria 4111363
217 2946033847 2946033335 Bacteria 3835514
218 2946044164 2946041624 Bacteria 4191385
219 2946080992 2946080515 Bacteria 4310960
220 2974297034 2974294766 Bacteria 3767688
221 2974326732 2974324384 Bacteria 3750535
222 2977231266 2977228692 Bacteria 3450105
223 2977240047 2977236895 Bacteria 3569373
224 2977266491 2977264416 Bacteria 3750737
225 2984545679 2984542743 Bacteria 3569378
226 2984581397 2984580707 Bacteria 3351387
227 2995728196 2995726249 Bacteria 3470435
228 8004185203 8004182704 Bacteria 3391155
229 8004214187 8004212874 Bacteria 2861420
230 8016257678 8016254467 Bacteria 3797036
231 8045831466 8045830549 Bacteria 4444727
232 8055035777 8055034563 Bacteria 3562128
233 8055038669 8055037949 Bacteria 3337834
234 8056037502 8056037122 Bacteria 3854319
235 Ga0307406_10070429
236 JGI25154J39366_1002434
237 Ga0006562J51391_1085532
238 Ga0006562J51391_1085535
239 Ga0070660_100187856
240 Ga0070671_100175306
241 Ga0070659_100146736
242 Ga0070667_100032789
243 Ga0070663_100442646
244 Ga0070665_100104686
245 Ga0075365_10000801
246 Ga0075365_10024231
247 Ga0075364_10005899
248 Ga0075364_10009842
249 Ga0075364_10011761
250 Ga0075364_10022231
251 Ga0075364_10111825
252 Ga0075364_10177703
253 Ga0075367_10001632
254 Ga0105244_10023640
255 Ga0105248_10011487
256 Ga0157370_10061323
257 Ga0157369_10004087
258 Ga0163162_10039824
259 Ga0157372_10697338
260 Ga0157375_10300267
261 Ga0209646_1000099
262 Ga0207655_1004123
263 Ga0207655_1080053
264 Ga0207705_10018919
265 Ga0207659_10464434
266 Ga0207690_10134381
267 Ga0207691_10276415
268 Ga0207711_10000332
269 Ga0207658_10062244
270 Ga0207678_10634139
271 Ga0207641_10382569
272 Ga0207675_100238695
273 Ga0268266_10034152
274 Ga0307515_10265419
275 Ga0307405_10159762
276 Ga0307406_10001738
277 Ga0307406_10005100
278 Ga0307406_10033096
279 Ga0307414_10031467
280 Ga0307414_10043154
281 Ga0307414_10090638
282 Ga0307415_100107686
283 Ga0307415_100244136
284 Ga0307415_100422342
285 Ga0395901_0040283
286 Ga0395901_0064935
287 Ga0451806_131985
288 Ga0451853_3772554
289 Ga0466972_0115858
290 Ga0466965_0021459
291 Ga0466963_0113605
292 Ga0466971_0027786
293 Ga0466968_0011321
294 Ga0466970_0000039
295 Ga0466957_0009856
296 Ga0466957_0210870
297 Ga0466960_0109678
298 Ga0466958_0031180
299 Ga0466967_0045997
300 Ga0466967_0106352
301 Ga0466967_0191551
302 Ga0495627_000357
303 Ga0495590_0001092
304 Ga0495620_0039888
305 Ga0495654_0044790
306 Ga0495645_0008939
307 Ga0495625_0239159
308 Ga0495672_0034952
309 Ga0496103_0004876
310 Ga0496105_0103223
311 Ga0496105_0157393
312 Ga0496106_0091655
313 Ga0496109_0013353
314 Ga0496109_0058023
315 Ga0496109_0221376
316 Ga0496112_0534698
317 Ga0496113_0093828
318 Ga0496113_0189991
319 Ga0496114_0016128
320 Ga0496115_0073951
321 Ga0496115_0157029
322 Ga0496117_0000468
323 Ga0496117_0000630
324 Ga0496117_0002894
325 Ga0496117_0091154
326 Ga0496118_0004920
327 Ga0496118_0016495
328 Ga0496118_0025553
329 Ga0496118_0229346
330 Ga0496119_0002046
331 Ga0496119_0002717
332 Ga0496119_0004650
333 Ga0496119_0007500
334 Ga0496119_0008597
335 Ga0496119_0161093
336 Ga0496120_0001568
337 Ga0496120_0001603
338 Ga0496120_0001799
339 Ga0496120_0113501
340 Ga0496120_0135045
341 Ga0496122_0000054
342 Ga0496122_0000240
343 Ga0496122_0001458
344 Ga0496122_0018355
345 Ga0496122_0021203
346 Ga0496122_0078942
347 Ga0496122_0192663
348 Ga0496123_0000039
349 Ga0496123_0000225
350 Ga0496123_0003197
351 Ga0496124_0001567
352 Ga0496124_0002353
353 Ga0496124_0002402
354 Ga0496124_0125023
355 Ga0496124_0302680
356 Ga0496125_0000061
357 Ga0496125_0003167
358 Ga0496125_0009923
359 Ga0496125_0010326
360 Ga0496125_0038671
361 Ga0496125_0072987
362 Ga0496125_0079045
363 Ga0496126_0000998
364 Ga0496126_0022655
365 Ga0496126_0024092
366 Ga0496126_0078520
367 Ga0496126_0262461
368 Ga0496126_0397608
369 Ga0501033_0009412
370 Ga0501033_0023769
371 Ga0501034_0007434
372 Ga0501034_0014801
373 Ga0501034_0905836
374 Ga0501037_0031241
375 Ga0501038_0002557
376 Ga0501038_0059034
377 Ga0501038_0071404
378 Ga0501042_0000243
379 Ga0501043_0020012
380 Ga0501046_0040206
381 Ga0501047_0000018
382 Ga0501068_0089167
383 Ga0501070_0000641
384 Ga0501070_0033082
385 Ga0501083_0000003
386 Ga0501035_0837260
387 Ga0501044_0008050
388 Ga0501044_0373168
389 nmdc:mga03n38_19130_c1
390 nmdc:mga00v17_17644_c1
391 nmdc:mga00v17_33023_c1
392 nmdc:mga00v17_34210_c1
393 nmdc:mga00v17_5267_c1
394 nmdc:mga0yw44_2733_c1
395 nmdc:mga06z11_103042_c1
396 Ga0500556_0000215
397 Ga0500562_003807
398 Ga0500593_003675
399 Ga0500655_004073
400 Ga0500568_0000014
401 Ga0500590_015507
402 Ga0500616_0002060
403 Ga0500616_0052646
404 Ga0500620_000275
405 Ga0466962_0126368
406 2588108379
407 2643733704
408 2643752017
409 2643785736
410 2643848403
411 2643885575
412 2643995865
413 2644111177
414 2644170278
415 2644680148
416 2723642006
417 2730229598
418 2747952811
419 2758226249
420 2774380618
421 2774399651
422 2808631304
423 2808885534
424 2808901979
425 2809227391
426 2812322994
427 2821269897
428 2833710827
429 2844855504
430 2852633231
431 2852647238
432 2852665217
433 2857480383
434 2857634030
435 2857720322
436 2857723746
437 2857732614
438 2870630241
439 2870802564
440 2870804627
441 2904512141
442 2906802925
443 2908681049
444 2919072480
445 2919399020
446 2919446243
447 2928091841
448 2928122955
449 2935411356
450 2945971704
451 2946033847
452 2946044164
453 2946080992
454 2974297034
455 2974326732
456 2977231266
457 2977240047
458 2977266491
459 2984545679
460 2984581397
461 2995728196
462 8004185203
463 8004214187
464 8016257678
465 8045831466
466 8055035777
467 8055038669
468 8056037502

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00290

Trp_syntA

Tryptophan synthase alpha chain

16

269

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
5tcf-assembly2.cif.gz_E crystal structure of tryptophan synthase from m. tuberculosis - ligand-free form 0.9781 1 258
5tch-assembly2.cif.gz_G crystal structure of tryptophan synthase from m. tuberculosis - ligand-free form, trpa-g66v mutant 0.9751 1 260
6dwe-assembly1.cif.gz_A crystal structure of tryptophan synthase from m. tuberculosis - aminoacrylate- and brd0059-bound form 0.9748 1 260
6e9p-assembly1.cif.gz_G crystal structure of tryptophan synthase from m. tuberculosis - open form with brd0059 bound 0.9743 1 260
6e9p-assembly2.cif.gz_C crystal structure of tryptophan synthase from m. tuberculosis - open form with brd0059 bound 0.973 1 258
ID Description Score Start End Superfamily
6du1C00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.971 1 260 3.20.20.70
6du1C00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9634 1 260 3.20.20.70
af_A0A1D8PMH6_3_266_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9458 3 254 3.20.20.70
1wxjA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9443 4 260 3.20.20.70
2ekcA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9435 1 260 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A560MQS0-F1-model_v4 deleted 0.9926 1 260
AF-A0A7D7WAY2-F1-model_v4 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.9914 1 262 GO:0004834
GO:0005829
GO:0006568
AF-A0A5B8HZN3-F1-model_v4 deleted 0.9902 4 255
AF-A0A368LEB1-F1-model_v4 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.9898 1 260 GO:0004834
GO:0005829
GO:0006568
AF-A0A7C9PLM1-F1-model_v4 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.9897 1 258 GO:0004834
GO:0005829
GO:0006568

Map