F348341

General Info

Members Datasets Scaffolds Average Seq Length
235 178 470 353

Family's Representative Sequence

Representative Sequence 3300041404|Ga0439436_0001562|Ga0439436_0001562_162_1370
Length 402
Sequence MRPSRDLAGARPSDPALPACGRCRGFRRARARLRAIPAQNPSSLKKSDFHYELPPELIAQAPLPERSASRLLLVPPAPAAFADRSFRDLPELLAPGDLLVFNDTRVIPARLFGHKASGGRVEILIERLLGGAQARAQLGVSKSPKPGARIALDAGGEAEVLGREGEFYRLQFHLDGQPHGDSLENWLLHAGRLPLPPYIQREPGSDDDERYQTVFAREVGAVAAPTAGLHFDEELLARLRERGVEFGHVTLHVGAGTFQPVRVDSLEQHVMHSEWLNVGAGLIEQIRRTRAAGGRVVAVGTTVVRALESAWRESAATRDGGEGGELQPFAGETRLFILPGYKIRSVDALITNFHLPESTLLMLVSAFAGHARVFAAYEHAIRERYRFFSYGDAMLLLPEADA

Samples

Sample ID Description Type Environment
1 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
4 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
8 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
9 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
10 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
11 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
12 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
13 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
14 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
15 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
16 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
17 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
18 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
28 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
31 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
35 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300012482 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.130510 Metagenome Rhizosphere
38 3300012500 Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610 Metagenome Rhizosphere
39 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
40 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
43 3300015689 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A02 Metagenome Rhizosphere
44 3300016635 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A10 Metagenome Rhizosphere
45 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
46 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
47 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
48 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
51 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
52 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
54 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
56 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
76 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
77 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
78 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
79 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
80 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
81 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
82 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
83 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
84 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
85 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
86 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
87 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
88 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
89 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
90 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
91 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
92 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
93 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
94 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
95 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
96 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
97 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
98 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
99 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
100 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
101 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
102 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
103 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
104 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
105 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
106 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
107 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
108 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
109 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
110 3300044672 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA3E Metagenome Unclassified
111 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
112 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
113 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
114 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
115 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
116 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
117 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
118 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
119 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
120 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
121 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
122 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
123 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
124 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
125 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
126 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
127 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
128 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
129 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
130 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
131 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
141 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
142 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
143 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
144 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
145 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
146 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
147 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
148 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
149 3300049772 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_B_4_control Metagenome Rhizosphere
150 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
151 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
152 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
153 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
154 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
155 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
156 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
157 2524614729 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
158 2571042365 Lysobacter oryzae DSM 21044 Isolate Rhizosphere
159 2627854209 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
160 2643221559 Lysobacter sp. Root559 Isolate Unclassified
161 2643221573 Lysobacter sp. Root604 Isolate Unclassified
162 2643221586 Lysobacter sp. Root667 Isolate Unclassified
163 2643221593 Lysobacter sp. Root690 Isolate Unclassified
164 2643221612 Lysobacter sp. Root76 Isolate Unclassified
165 2643221695 Lysobacter sp. Root494 Isolate Unclassified
166 2643221720 Lysobacter sp. Root916 Isolate Unclassified
167 2643221727 Lysobacter sp. Root96 Isolate Unclassified
168 2643221728 Lysobacter sp. Root983 Isolate Unclassified
169 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
170 2852649853 Stenotrophomonas sp. JAI102 Isolate Rhizosphere
171 2894414249 Luteimonas sp. LNNU 24178 Isolate Rhizosphere
172 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
173 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
174 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
175 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
176 2919513703 Luteimonas sp. 3794 Isolate Unclassified
177 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
178 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90.21
Metatranscriptomes 0.43
Isolates 9.36

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.3
Nodule 0
Rhizoplane 2.13
Rhizosphere 67.23
Stem 0
Stem Tuber 0
Unclassified 0.85

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0439436_0001562 3300041404 Bacteria 6667
2 JGI24737J22298_10001698 3300001990 Bacteria 7856
3 JGI25152J39213_1000032 3300002773 Bacteria 96369
4 JGI25150J39212_1000179 3300002774 Bacteria 35481
5 JGI25151J46595_10000138 3300003187 Bacteria 96369
6 JGI25151J46595_10000257 3300003187 Bacteria 62308
7 JGI25151J46595_10055359 3300003187 Bacteria 1309
8 JGI25153J46596_10000102 3300003215 Bacteria 96369
9 JGI25153J46596_10020391 3300003215 Bacteria 2508
10 Ga0006562J51391_1113657 3300003578 Bacteria 6327
11 Ga0055526_1000008 3300003771 Bacteria 300059
12 Ga0055537_1001531 3300003773 Bacteria 8852
13 Ga0055524_1000087 3300003775 Bacteria 116388
14 Ga0055536_1001004 3300003781 Bacteria 17924
15 Ga0055536_1029964 3300003781 Bacteria 1451
16 Ga0055534_1000003 3300003784 Bacteria 300063
17 Ga0055528_1000004 3300003790 Bacteria 285772
18 Ga0065715_10005205 3300005293 Bacteria 3410
19 Ga0065715_10118743 3300005293 Bacteria 2307
20 Ga0070658_10210691 3300005327 Bacteria 1641
21 Ga0070660_100037508 3300005339 Bacteria 3674
22 Ga0070668_100008484 3300005347 Bacteria 7631
23 Ga0070713_100009236 3300005436 Bacteria 7042
24 Ga0070681_10000006 3300005458 Bacteria 169066
25 Ga0070679_100036175 3300005530 Bacteria 4899
26 Ga0070693_100039201 3300005547 Bacteria 2653
27 Ga0068855_100071169 3300005563 Bacteria 4045
28 Ga0070664_100042156 3300005564 Bacteria 3853
29 Ga0068857_100000328 3300005577 Bacteria 32670
30 Ga0068854_100007710 3300005578 Bacteria 6882
31 Ga0068864_100029518 3300005618 Bacteria 4646
32 Ga0068851_10038357 3300005834 Bacteria 2403
33 Ga0070717_10083737 3300006028 Bacteria 2682
34 Ga0075428_100099152 3300006844 Bacteria 3176
35 Ga0075436_100049107 3300006914 Bacteria 2911
36 Ga0105251_10005460 3300009011 Bacteria 8296
37 Ga0105240_10039434 3300009093 Bacteria 6049
38 Ga0111539_10292721 3300009094 Bacteria 1895
39 Ga0105237_10000543 3300009545 Bacteria 53109
40 Ga0105028_103117 3300009993 Bacteria 1735
41 Ga0105239_10522767 3300010375 Bacteria 1350
42 Ga0157318_1000278 3300012482 Bacteria 2025
43 Ga0157314_1000139 3300012500 Bacteria 8103
44 Ga0157371_10023597 3300013102 Bacteria 4498
45 Ga0157370_10147422 3300013104 Bacteria 2191
46 Ga0157372_10050966 3300013307 Bacteria 4605
47 Ga0157372_10350285 3300013307 Bacteria 1720
48 Ga0182008_10031250 3300014497 Bacteria 2681
49 Ga0183360_10001 3300015689 Bacteria 3943671
50 Ga0183361_11341 3300016635 Bacteria 1259
51 Ga0213875_10000127 3300021388 Bacteria 84034
52 Ga0207425_1000078 3300025245 Bacteria 104429
53 Ga0209129_1000157 3300025258 Bacteria 105043
54 Ga0209129_1005959 3300025258 Bacteria 4104
55 Ga0209565_1000001 3300025263 Bacteria 2950419
56 Ga0209673_1000001 3300025273 Bacteria 3176258
57 Ga0209673_1019826 3300025273 Bacteria 2402
58 Ga0209130_1005657 3300025284 Bacteria 4273
59 Ga0209675_1000001 3300025291 Bacteria 2950293
60 Ga0209676_1002456 3300025292 Bacteria 13108
61 Ga0209676_1005840 3300025292 Bacteria 6283
62 Ga0209676_1009098 3300025292 Bacteria 4333
63 Ga0209025_1000015 3300025294 Bacteria 808120
64 Ga0209025_1000054 3300025294 Bacteria 317002
65 Ga0209025_1003790 3300025294 Bacteria 13825
66 Ga0209564_1000001 3300025295 Bacteria 3176258
67 Ga0209564_1010537 3300025295 Bacteria 4242
68 Ga0209758_1000062 3300025297 Bacteria 317002
69 Ga0209758_1000644 3300025297 Bacteria 53122
70 Ga0209050_1005753 3300025298 Bacteria 7646
71 Ga0209256_1000002 3300025299 Bacteria 1906740
72 Ga0209256_1001265 3300025299 Bacteria 27598
73 Ga0209256_1009583 3300025299 Bacteria 4218
74 Ga0209257_1002368 3300025304 Bacteria 18895
75 Ga0209257_1003833 3300025304 Bacteria 12324
76 Ga0209257_1017394 3300025304 Bacteria 2835
77 Ga0207699_10035218 3300025906 Bacteria 2847
78 Ga0207707_10000529 3300025912 Bacteria 39088
79 Ga0207695_10001529 3300025913 Bacteria 38215
80 Ga0207695_10434795 3300025913 Unclassified 1196
81 Ga0207671_10000038 3300025914 Bacteria 227066
82 Ga0207693_10105603 3300025915 Bacteria 2209
83 Ga0207657_10004447 3300025919 Bacteria 14830
84 Ga0207649_10143750 3300025920 Bacteria 1635
85 Ga0207681_10005273 3300025923 Bacteria 7940
86 Ga0207681_10249115 3300025923 Bacteria 1386
87 Ga0207700_10002928 3300025928 Bacteria 9849
88 Ga0207644_10056827 3300025931 Bacteria 2824
89 Ga0207667_10000693 3300025949 Bacteria 43651
90 Ga0207667_10343318 3300025949 Bacteria 1523
91 Ga0207668_10149467 3300025972 Bacteria 1806
92 Ga0207640_10005735 3300025981 Bacteria 6764
93 Ga0207703_10047265 3300026035 Bacteria 3469
94 Ga0207678_10107626 3300026067 Bacteria 2378
95 Ga0207674_10002019 3300026116 Bacteria 25743
96 Ga0209974_10002840 3300027876 Bacteria 6289
97 Ga0314311_1060965 3300030733 Bacteria 11188
98 Ga0316181_1225543 3300030744 Bacteria 2958
99 Ga0265325_10011772 3300031241 Bacteria 5018
100 Ga0265331_10026449 3300031250 Bacteria 2916
101 Ga0265327_10000934 3300031251 Bacteria 42807
102 Ga0265327_10017764 3300031251 Bacteria 4441
103 Ga0265316_10000186 3300031344 Bacteria 71372
104 Ga0307408_100025868 3300031548 Bacteria 4023
105 Ga0307408_100143858 3300031548 Bacteria 1874
106 Ga0307408_100256102 3300031548 Bacteria 1446
107 Ga0307405_10107033 3300031731 Bacteria 1887
108 Ga0307413_10019652 3300031824 Bacteria 3575
109 Ga0307413_10124958 3300031824 Bacteria 1750
110 Ga0307413_10177167 3300031824 Bacteria 1516
111 Ga0307410_10054935 3300031852 Bacteria 2702
112 Ga0307410_10117618 3300031852 Bacteria 1933
113 Ga0307406_10003836 3300031901 Bacteria 8185
114 Ga0307406_10024819 3300031901 Bacteria 3584
115 Ga0307407_10017660 3300031903 Bacteria 3588
116 Ga0307412_10083008 3300031911 Bacteria 2220
117 Ga0307412_10183916 3300031911 Bacteria 1574
118 Ga0307414_10004018 3300032004 Bacteria 7940
119 Ga0307414_10018246 3300032004 Bacteria 4313
120 Ga0307414_10040634 3300032004 Bacteria 3143
121 Ga0307414_10258987 3300032004 Bacteria 1450
122 Ga0307411_10021936 3300032005 Bacteria 3749
123 Ga0373950_0000015 3300034818 Bacteria 281101
124 Ga0316584_0200627 3300036712 Bacteria 1472
125 Ga0395899_0012077 3300037312 Bacteria 6615
126 Ga0395899_0060969 3300037312 Bacteria 2778
127 Ga0395900_0009764 3300037418 Bacteria 9833
128 Ga0395900_0076522 3300037418 Bacteria 3439
129 Ga0395898_0119160 3300037466 Bacteria 2528
130 Ga0395905_0000883 3300037471 Bacteria 39095
131 Ga0395905_0136452 3300037471 Bacteria 2308
132 Ga0436364_0008432 3300037853 Unclassified 2154
133 Ga0436364_1211910 3300037853 Bacteria 3364
134 Ga0436364_1230766 3300037853 Bacteria 152032
135 Ga0395901_0015549 3300038443 Bacteria 7750
136 Ga0395901_0121366 3300038443 Bacteria 2747
137 Ga0237819_00054 3300038705 Bacteria 40103
138 Ga0439436_0007104 3300041404 Bacteria 3446
139 Ga0439465_0011347 3300041413 Bacteria 2796
140 Ga0451791_0159426 3300041451 Bacteria 2156
141 Ga0451802_0800162 3300041460 Bacteria 1543
142 Ga0451837_0613104 3300041494 Bacteria 1372
143 Ga0439433_0013488 3300041999 Bacteria 1795
144 Ga0439432_012190 3300042006 Bacteria 2948
145 Ga0439449_0001830 3300042007 Bacteria 8368
146 Ga0439449_0005336 3300042007 Bacteria 4922
147 Ga0439449_0021892 3300042007 Bacteria 2392
148 Ga0439449_0035320 3300042007 Bacteria 1861
149 Ga0439462_0005371 3300042015 Bacteria 3157
150 Ga0439434_0048102 3300042435 Bacteria 1319
151 Ga0451577_0003681 3300042876 Bacteria 16786
152 Ga0451577_0005267 3300042876 Bacteria 13296
153 Ga0466982_0000003 3300044672 Bacteria 417243
154 Ga0453683_0005713 3300044673 Bacteria 8636
155 Ga0453684_0000377 3300044712 Bacteria 183445
156 Ga0453684_0001452 3300044712 Bacteria 67372
157 Ga0453684_0014179 3300044712 Bacteria 12802
158 Ga0466957_0035701 3300044842 Bacteria 2984
159 Ga0451576_0000033 3300045051 Bacteria 393131
160 Ga0451576_0000166 3300045051 Bacteria 166647
161 Ga0451576_0011985 3300045051 Bacteria 9790
162 Ga0451576_0017628 3300045051 Bacteria 7847
163 Ga0451576_0189358 3300045051 Bacteria 2149
164 Ga0495638_0055884 3300046460 Bacteria 2450
165 Ga0495580_0120935 3300046472 Bacteria 1818
166 Ga0495608_0121707 3300046511 Bacteria 1673
167 Ga0495668_0006906 3300046616 Bacteria 7349
168 Ga0495670_0051986 3300046691 Bacteria 2051
169 Ga0495636_0000667 3300047318 Bacteria 12588
170 Ga0495636_0031671 3300047318 Bacteria 2168
171 Ga0496109_0130196 3300048912 Bacteria 2348
172 Ga0496112_0470354 3300048915 Bacteria 1194
173 Ga0496113_0069256 3300048916 Bacteria 2679
174 Ga0496117_0014545 3300048920 Bacteria 6772
175 Ga0496119_0016344 3300048922 Bacteria 5652
176 Ga0496120_0012147 3300048923 Bacteria 5873
177 Ga0496121_0001122 3300048924 Bacteria 47076
178 Ga0496121_0025948 3300048924 Bacteria 5542
179 Ga0496122_0001005 3300048925 Bacteria 49968
180 Ga0496123_0000482 3300048926 Bacteria 69205
181 Ga0496125_0000348 3300048928 Bacteria 87672
182 Ga0496125_0053821 3300048928 Bacteria 3295
183 Ga0501031_0019251 3300049568 Bacteria 4445
184 Ga0501032_0077339 3300049569 Bacteria 2216
185 Ga0501033_0000932 3300049570 Bacteria 26712
186 Ga0501034_0002957 3300049571 Bacteria 19690
187 Ga0501034_0012981 3300049571 Bacteria 8587
188 Ga0501036_0072491 3300049572 Bacteria 2911
189 Ga0501037_0026986 3300049573 Bacteria 4243
190 Ga0501038_0072193 3300049574 Bacteria 2925
191 Ga0501043_0000526 3300049579 Bacteria 34405
192 Ga0501047_0104537 3300049581 Bacteria 2712
193 Ga0501067_0000030 3300049583 Bacteria 87924
194 Ga0501069_0075109 3300049585 Bacteria 1898
195 Ga0501070_0001091 3300049586 Bacteria 24388
196 Ga0501073_0000498 3300049589 Bacteria 27426
197 Ga0501073_0316138 3300049589 Bacteria 1077
198 Ga0501074_0084052 3300049590 Bacteria 2282
199 Ga0501074_0145518 3300049590 Bacteria 1695
200 Ga0501217_029955 3300049661 Bacteria 1334
201 Ga0501080_0070136 3300049742 Bacteria 3259
202 Ga0501080_0238247 3300049742 Bacteria 1661
203 Ga0501083_0036664 3300049744 Bacteria 3343
204 Ga0501268_003573 3300049765 Bacteria 2139
205 Ga0501275_000023 3300049772 Bacteria 17435
206 Ga0501035_0007324 3300049822 Bacteria 10318
207 Ga0501044_0015593 3300049823 Bacteria 8188
208 Ga0500651_0025091 3300053093 Bacteria 3740
209 Ga0500559_0083742 3300053136 Bacteria 1453
210 Ga0500634_0000229 3300053161 Bacteria 18154
211 Ga0500625_001453 3300053729 Bacteria 8134
212 Ga0501082_0011488 3300060353 Bacteria 7622
213 Ga0501082_0062064 3300060353 Bacteria 3216
214 2525557094 2524614729 Bacteria 3091755
215 2572256346 2571042365 Bacteria 3289345
216 2630648690 2627854209 Bacteria 3093011
217 2643816279 2643221559 Bacteria 4424915
218 2643881662 2643221573 Bacteria 4784121
219 2643939036 2643221586 Bacteria 4446529
220 2643977657 2643221593 Bacteria 6296053
221 2644077223 2643221612 Bacteria 4361984
222 2644528665 2643221695 Bacteria 3441323
223 2644662751 2643221720 Bacteria 4694283
224 2644694550 2643221727 Bacteria 4415595
225 2644698295 2643221728 Bacteria 4797149
226 2748016414 2747842501 Bacteria 5293829
227 2852651054 2852649853 Bacteria 4036942
228 2894416162 2894414249 Bacteria 4405451
229 2895498983 2895498888 Bacteria 5283788
230 2895512021 2895511927 Bacteria 6802080
231 2895524913 2895522137 Bacteria 3284416
232 2895527964 2895525241 Bacteria 3388457
233 2919515300 2919513703 Bacteria 3844312
234 2941489801 2941489479 Bacteria 6313767
235 2995950688 2995948881 Bacteria 6358104
236 Ga0439436_0001562
237 JGI24737J22298_10001698
238 JGI25152J39213_1000032
239 JGI25150J39212_1000179
240 JGI25151J46595_10000138
241 JGI25151J46595_10000257
242 JGI25151J46595_10055359
243 JGI25153J46596_10000102
244 JGI25153J46596_10020391
245 Ga0006562J51391_1113657
246 Ga0055526_1000008
247 Ga0055537_1001531
248 Ga0055524_1000087
249 Ga0055536_1001004
250 Ga0055536_1029964
251 Ga0055534_1000003
252 Ga0055528_1000004
253 Ga0065715_10005205
254 Ga0065715_10118743
255 Ga0070658_10210691
256 Ga0070660_100037508
257 Ga0070668_100008484
258 Ga0070713_100009236
259 Ga0070681_10000006
260 Ga0070679_100036175
261 Ga0070693_100039201
262 Ga0068855_100071169
263 Ga0070664_100042156
264 Ga0068857_100000328
265 Ga0068854_100007710
266 Ga0068864_100029518
267 Ga0068851_10038357
268 Ga0070717_10083737
269 Ga0075428_100099152
270 Ga0075436_100049107
271 Ga0105251_10005460
272 Ga0105240_10039434
273 Ga0111539_10292721
274 Ga0105237_10000543
275 Ga0105028_103117
276 Ga0105239_10522767
277 Ga0157318_1000278
278 Ga0157314_1000139
279 Ga0157371_10023597
280 Ga0157370_10147422
281 Ga0157372_10050966
282 Ga0157372_10350285
283 Ga0182008_10031250
284 Ga0183360_10001
285 Ga0183361_11341
286 Ga0213875_10000127
287 Ga0207425_1000078
288 Ga0209129_1000157
289 Ga0209129_1005959
290 Ga0209565_1000001
291 Ga0209673_1000001
292 Ga0209673_1019826
293 Ga0209130_1005657
294 Ga0209675_1000001
295 Ga0209676_1002456
296 Ga0209676_1005840
297 Ga0209676_1009098
298 Ga0209025_1000015
299 Ga0209025_1000054
300 Ga0209025_1003790
301 Ga0209564_1000001
302 Ga0209564_1010537
303 Ga0209758_1000062
304 Ga0209758_1000644
305 Ga0209050_1005753
306 Ga0209256_1000002
307 Ga0209256_1001265
308 Ga0209256_1009583
309 Ga0209257_1002368
310 Ga0209257_1003833
311 Ga0209257_1017394
312 Ga0207699_10035218
313 Ga0207707_10000529
314 Ga0207695_10001529
315 Ga0207695_10434795
316 Ga0207671_10000038
317 Ga0207693_10105603
318 Ga0207657_10004447
319 Ga0207649_10143750
320 Ga0207681_10005273
321 Ga0207681_10249115
322 Ga0207700_10002928
323 Ga0207644_10056827
324 Ga0207667_10000693
325 Ga0207667_10343318
326 Ga0207668_10149467
327 Ga0207640_10005735
328 Ga0207703_10047265
329 Ga0207678_10107626
330 Ga0207674_10002019
331 Ga0209974_10002840
332 Ga0314311_1060965
333 Ga0316181_1225543
334 Ga0265325_10011772
335 Ga0265331_10026449
336 Ga0265327_10000934
337 Ga0265327_10017764
338 Ga0265316_10000186
339 Ga0307408_100025868
340 Ga0307408_100143858
341 Ga0307408_100256102
342 Ga0307405_10107033
343 Ga0307413_10019652
344 Ga0307413_10124958
345 Ga0307413_10177167
346 Ga0307410_10054935
347 Ga0307410_10117618
348 Ga0307406_10003836
349 Ga0307406_10024819
350 Ga0307407_10017660
351 Ga0307412_10083008
352 Ga0307412_10183916
353 Ga0307414_10004018
354 Ga0307414_10018246
355 Ga0307414_10040634
356 Ga0307414_10258987
357 Ga0307411_10021936
358 Ga0373950_0000015
359 Ga0316584_0200627
360 Ga0395899_0012077
361 Ga0395899_0060969
362 Ga0395900_0009764
363 Ga0395900_0076522
364 Ga0395898_0119160
365 Ga0395905_0000883
366 Ga0395905_0136452
367 Ga0436364_0008432
368 Ga0436364_1211910
369 Ga0436364_1230766
370 Ga0395901_0015549
371 Ga0395901_0121366
372 Ga0237819_00054
373 Ga0439436_0007104
374 Ga0439465_0011347
375 Ga0451791_0159426
376 Ga0451802_0800162
377 Ga0451837_0613104
378 Ga0439433_0013488
379 Ga0439432_012190
380 Ga0439449_0001830
381 Ga0439449_0005336
382 Ga0439449_0021892
383 Ga0439449_0035320
384 Ga0439462_0005371
385 Ga0439434_0048102
386 Ga0451577_0003681
387 Ga0451577_0005267
388 Ga0466982_0000003
389 Ga0453683_0005713
390 Ga0453684_0000377
391 Ga0453684_0001452
392 Ga0453684_0014179
393 Ga0466957_0035701
394 Ga0451576_0000033
395 Ga0451576_0000166
396 Ga0451576_0011985
397 Ga0451576_0017628
398 Ga0451576_0189358
399 Ga0495638_0055884
400 Ga0495580_0120935
401 Ga0495608_0121707
402 Ga0495668_0006906
403 Ga0495670_0051986
404 Ga0495636_0000667
405 Ga0495636_0031671
406 Ga0496109_0130196
407 Ga0496112_0470354
408 Ga0496113_0069256
409 Ga0496117_0014545
410 Ga0496119_0016344
411 Ga0496120_0012147
412 Ga0496121_0001122
413 Ga0496121_0025948
414 Ga0496122_0001005
415 Ga0496123_0000482
416 Ga0496125_0000348
417 Ga0496125_0053821
418 Ga0501031_0019251
419 Ga0501032_0077339
420 Ga0501033_0000932
421 Ga0501034_0002957
422 Ga0501034_0012981
423 Ga0501036_0072491
424 Ga0501037_0026986
425 Ga0501038_0072193
426 Ga0501043_0000526
427 Ga0501047_0104537
428 Ga0501067_0000030
429 Ga0501069_0075109
430 Ga0501070_0001091
431 Ga0501073_0000498
432 Ga0501073_0316138
433 Ga0501074_0084052
434 Ga0501074_0145518
435 Ga0501217_029955
436 Ga0501080_0070136
437 Ga0501080_0238247
438 Ga0501083_0036664
439 Ga0501268_003573
440 Ga0501275_000023
441 Ga0501035_0007324
442 Ga0501044_0015593
443 Ga0500651_0025091
444 Ga0500559_0083742
445 Ga0500634_0000229
446 Ga0500625_001453
447 Ga0501082_0011488
448 Ga0501082_0062064
449 2525557094
450 2572256346
451 2630648690
452 2643816279
453 2643881662
454 2643939036
455 2643977657
456 2644077223
457 2644528665
458 2644662751
459 2644694550
460 2644698295
461 2748016414
462 2852651054
463 2894416162
464 2895498983
465 2895512021
466 2895524913
467 2895527964
468 2919515300
469 2941489801
470 2995950688

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02547

Queuosine_synth

Queuosine biosynthesis protein

46

396

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5hkk-assembly1.cif.gz_A caldalaklibacillus thermarum f1-atpase (wild type) 0.7705 78 132
5ik2-assembly1.cif.gz_C caldalaklibacillus thermarum f1-atpase (epsilon mutant) 0.77 78 132
6oqu-assembly1.cif.gz_C e. coli atp synthase state 1d 0.7428 82 133
6q45-assembly2.cif.gz_J f1-atpase from fusobacterium nucleatum 0.7379 82 129
6q45-assembly1.cif.gz_B f1-atpase from fusobacterium nucleatum 0.7377 82 129
ID Description Score Start End Superfamily
af_P0A7F9_64_163_3.40.1780.10 Alpha Beta;3-Layer(aba) Sandwich;QueA-like;QueA-like 0.9642 64 159 3.40.1780.10
1vkyA01 Alpha Beta;3-Layer(aba) Sandwich;QueA-like;QueA-like 0.9511 4 339 3.40.1780.10
1vkyA01 Alpha Beta;3-Layer(aba) Sandwich;QueA-like;QueA-like 0.9466 4 339 3.40.1780.10
af_P0A7F9_64_163_3.40.1780.10 Alpha Beta;3-Layer(aba) Sandwich;QueA-like;QueA-like 0.9176 64 159 3.40.1780.10
1vkyA02 Mainly Beta;Beta Barrel;Thrombin, subunit H;QueA-like 0.853 64 143 2.40.10.240
ID Description Score Start End GO Terms
AF-A0A4R3Y4T3-F1-model_v4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) (Queuosine biosynthesis protein QueA) 0.9872 1 342 GO:0002099
GO:0005737
GO:0008616
GO:0051075
AF-T1BWX1-F1-model_v4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.986 223 332 GO:0002099
GO:0005737
GO:0008616
GO:0051075
AF-A0A4R3Y4T3-F1-model_v4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) (Queuosine biosynthesis protein QueA) 0.9843 1 342 GO:0002099
GO:0005737
GO:0008616
GO:0051075
AF-A0A378AU24-F1-model_v4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) (Queuosine biosynthesis protein QueA) 0.9832 1 341 GO:0002099
GO:0005737
GO:0008616
GO:0051075
AF-A0A1F8TU53-F1-model_v4 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.9828 43 334 GO:0002099
GO:0005737
GO:0008616
GO:0051075

Map