F348642
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 235 | 158 | 470 | 336 |
Family's Representative Sequence
| Representative Sequence | iso_pu_bacteria|2952252522|2952254538 |
| Length | 374 |
| Sequence | RSAAARPRRITAGLLVALLALPLPSLAAPFWGERQSSPVDTPLDDLAPGAWIWGGDDERGGPMAVVVSLTEQRAYVYRNGVLIGVSTISSGRPGYETPTGVFTVLQKDRDHRSNLYNDAPMPFQQRLTWDGIALHAGGLPGYPESHGCVHLPSAFARHLFDASNLGMTVVVAKAGEAPVALVHPGPASPIDPHTGADIDSPPLANGQPWAWALSPPSEGPISMILSRSDRLLVVYRNGIEIGRSRVELARPGEHGGTRAYIVEGATTAVSNITAPSTATAADTMPAMPSWIAIGVPGAEQHAGQRVPASVVNQVSLPDAFKARLLPLLVPGSVLVATDAPLSAQGSGEHLRVIDSVGPRSWLDEVDAARHQGGA |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300001989 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 | Metagenome | Rhizosphere |
| 2 | 3300002067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 | Metagenome | Rhizosphere |
| 3 | 3300002773 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS | Metagenome | Endosphere |
| 4 | 3300002774 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA | Metagenome | Endosphere |
| 5 | 3300003187 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB | Metagenome | Endosphere |
| 6 | 3300003215 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF | Metagenome | Endosphere |
| 7 | 3300003316 | Sugarcane root Sample L1 | Metagenome | Unclassified |
| 8 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 9 | 3300003578 | Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) | Metatranscriptome | Unclassified |
| 10 | 3300003771 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 | Metagenome | Endosphere |
| 11 | 3300003773 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 | Metagenome | Endosphere |
| 12 | 3300003775 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 | Metagenome | Endosphere |
| 13 | 3300003781 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 | Metagenome | Endosphere |
| 14 | 3300003784 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 | Metagenome | Endosphere |
| 15 | 3300003790 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 | Metagenome | Endosphere |
| 16 | 3300003791 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 17 | 3300003792 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 | Metagenome | Endosphere |
| 18 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 19 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 20 | 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Metagenome | Rhizosphere |
| 21 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Metagenome | Rhizosphere |
| 23 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 24 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 25 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 26 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 27 | 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Metagenome | Rhizosphere |
| 28 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 29 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 30 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 31 | 3300005983 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 | Metagenome | Rhizosphere |
| 32 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 33 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 34 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 35 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 36 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 37 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 38 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 39 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 40 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 41 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 42 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 43 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 44 | 3300025245 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) | Metagenome | Endosphere |
| 45 | 3300025258 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) | Metagenome | Endosphere |
| 46 | 3300025263 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 47 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 48 | 3300025291 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 49 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 50 | 3300025294 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 51 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 52 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 53 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 54 | 3300025299 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 55 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 56 | 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 72 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 73 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 74 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 75 | 3300034820 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 | Metagenome | Rhizosphere |
| 76 | 3300038705 | Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 | Metagenome | Unclassified |
| 77 | 3300039145 | Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JP6-T1 | Metagenome | Unclassified |
| 78 | 3300041462 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG | Metagenome | Rhizoplane |
| 79 | 3300042005 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 | Metagenome | Rhizosphere |
| 80 | 3300042008 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 | Metagenome | Rhizosphere |
| 81 | 3300042012 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 | Metagenome | Rhizosphere |
| 82 | 3300042157 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 | Metagenome | Rhizosphere |
| 83 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 84 | 3300046453 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere | Metagenome | Rhizosphere |
| 85 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 86 | 3300046471 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere | Metagenome | Rhizosphere |
| 87 | 3300046474 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere | Metagenome | Rhizosphere |
| 88 | 3300046501 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere | Metagenome | Rhizosphere |
| 89 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 90 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 91 | 3300046512 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere | Metagenome | Rhizosphere |
| 92 | 3300046520 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere | Metagenome | Rhizosphere |
| 93 | 3300046522 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere | Metagenome | Rhizosphere |
| 94 | 3300046524 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere | Metagenome | Rhizosphere |
| 95 | 3300046529 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere | Metagenome | Rhizosphere |
| 96 | 3300046536 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere | Metagenome | Rhizosphere |
| 97 | 3300046542 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere | Metagenome | Rhizosphere |
| 98 | 3300046543 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere | Metagenome | Rhizosphere |
| 99 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 100 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 101 | 3300046663 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere | Metagenome | Rhizosphere |
| 102 | 3300046678 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere | Metagenome | Rhizosphere |
| 103 | 3300046679 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere | Metagenome | Rhizosphere |
| 104 | 3300046691 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere | Metagenome | Rhizosphere |
| 105 | 3300046692 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300046809 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere | Metagenome | Rhizosphere |
| 107 | 3300047317 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere | Metagenome | Rhizosphere |
| 108 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 109 | 3300047469 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere | Metagenome | Rhizosphere |
| 110 | 3300047470 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere | Metagenome | Rhizosphere |
| 111 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 112 | 3300048088 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere | Metagenome | Rhizosphere |
| 113 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 114 | 3300048916 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 | Metagenome | Rhizoplane |
| 115 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 116 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 117 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 118 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 119 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 120 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 121 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 122 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 123 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 124 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 125 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 126 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 127 | 3300049459 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere | Metagenome | Rhizosphere |
| 128 | 3300049460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere | Metagenome | Rhizosphere |
| 129 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 130 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 131 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 132 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 133 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 134 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 135 | 3300050496 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation | Metagenome | Endosphere |
| 136 | 3300053087 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere | Metagenome | Endosphere |
| 137 | 3300053103 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere | Metagenome | Endosphere |
| 138 | 3300053120 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere | Metagenome | Endosphere |
| 139 | 3300053125 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere | Metagenome | Endosphere |
| 140 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 141 | 3300053161 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere | Metagenome | Endosphere |
| 142 | 2952252522 | Salinicola sp. DM10 | Isolate | Unclassified |
| 143 | 2593339239 | Luteibacter sp. UNCMF331Sha3.1 | Isolate | Unclassified |
| 144 | 2747842501 | Xanthomonas sp. WCS2014-23 | Isolate | Unclassified |
| 145 | 2791355048 | Caulobacter flavus CGMCC1 15093 | Isolate | Rhizosphere |
| 146 | 2842780639 | Pseudoxanthomonas sp. R-71986 | Isolate | Unclassified |
| 147 | 2843744320 | Caulobacter flavus RHGG3 | Isolate | Unclassified |
| 148 | 2849560528 | Caulobacter zeae 410 | Isolate | Unclassified |
| 149 | 2849573788 | Caulobacter endophyticus 774 | Isolate | Unclassified |
| 150 | 2851153111 | Caulobacter radicis 736 | Isolate | Unclassified |
| 151 | 2884338543 | Luteibacter pinisoli MAH-14 | Isolate | Rhizosphere |
| 152 | 2898329390 | Caulobacter sp. 602-2 | Isolate | Rhizosphere |
| 153 | 2919675420 | Luteimonas terrae 4099 | Isolate | Unclassified |
| 154 | 2939589442 | Stenotrophomonas rhizophila 716 | Isolate | Rhizosphere |
| 155 | 2974307012 | Stenotrophomonas sp. SORGH_AS_0282 | Isolate | Unclassified |
| 156 | 2977247770 | Stenotrophomonas rhizophila SORGH_AS 457 | Isolate | Unclassified |
| 157 | 2984514374 | Stenotrophomonas sp. SORGH_AS282 | Isolate | Aerial Root |
| 158 | 8003014200 | Lysobacter changpingensis Cm-3-T8 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 92.34 |
| Metatranscriptomes | 0.43 |
| Isolates | 7.23 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0.43 |
| Bulb | 0 |
| Endosphere | 27.23 |
| Nodule | 0 |
| Rhizoplane | 2.13 |
| Rhizosphere | 52.77 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI24739J22299_10019962 | 3300001989 | Bacteria | 2396 |
| 2 | JGI24739J22299_10019973 | 3300001989 | Bacteria | 2395 |
| 3 | JGI24735J21928_10007867 | 3300002067 | Bacteria | 3463 |
| 4 | JGI25152J39213_1000018 | 3300002773 | Bacteria | 109715 |
| 5 | JGI25150J39212_1000331 | 3300002774 | Bacteria | 23287 |
| 6 | JGI25151J46595_10000111 | 3300003187 | Bacteria | 111802 |
| 7 | JGI25153J46596_10000085 | 3300003215 | Bacteria | 111802 |
| 8 | rootH1_10114510 | 3300003316 | Bacteria | 1655 |
| 9 | rootH2_10178763 | 3300003320 | Bacteria | 1931 |
| 10 | Ga0006562J51391_1086243 | 3300003578 | Bacteria | 12450 |
| 11 | Ga0055526_1001627 | 3300003771 | Bacteria | 15764 |
| 12 | Ga0055526_1026163 | 3300003771 | Bacteria | 1850 |
| 13 | Ga0055537_1000244 | 3300003773 | Bacteria | 39860 |
| 14 | Ga0055524_1002716 | 3300003775 | Bacteria | 8933 |
| 15 | Ga0055524_1002767 | 3300003775 | Bacteria | 8819 |
| 16 | Ga0055536_1008533 | 3300003781 | Bacteria | 4390 |
| 17 | Ga0055534_1000030 | 3300003784 | Bacteria | 121396 |
| 18 | Ga0055534_1000219 | 3300003784 | Bacteria | 42036 |
| 19 | Ga0055528_1000340 | 3300003790 | Bacteria | 38910 |
| 20 | Ga0055530_10001335 | 3300003791 | Bacteria | 18469 |
| 21 | Ga0055540_1030608 | 3300003792 | Bacteria | 1247 |
| 22 | Ga0055531_10003645 | 3300003794 | Bacteria | 9713 |
| 23 | Ga0055531_10004523 | 3300003794 | Bacteria | 8437 |
| 24 | Ga0055531_10005869 | 3300003794 | Bacteria | 7090 |
| 25 | Ga0055531_10013884 | 3300003794 | Bacteria | 3675 |
| 26 | Ga0065704_10072374 | 3300005289 | Bacteria | 8644 |
| 27 | Ga0070666_10052414 | 3300005335 | Bacteria | 2750 |
| 28 | Ga0070666_10188713 | 3300005335 | Bacteria | 1448 |
| 29 | Ga0070671_100024012 | 3300005355 | Bacteria | 4989 |
| 30 | Ga0070671_100072654 | 3300005355 | Bacteria | 2873 |
| 31 | Ga0070674_100013789 | 3300005356 | Bacteria | 5005 |
| 32 | Ga0070667_100000173 | 3300005367 | Bacteria | 79829 |
| 33 | Ga0070667_100000946 | 3300005367 | Bacteria | 26682 |
| 34 | Ga0070663_100000068 | 3300005455 | Bacteria | 44842 |
| 35 | Ga0070662_100130552 | 3300005457 | Bacteria | 1936 |
| 36 | Ga0068853_100005202 | 3300005539 | Bacteria | 10174 |
| 37 | Ga0070693_100012634 | 3300005547 | Bacteria | 4277 |
| 38 | Ga0070693_100103406 | 3300005547 | Bacteria | 1739 |
| 39 | Ga0070665_100000095 | 3300005548 | Bacteria | 170459 |
| 40 | Ga0070665_100040433 | 3300005548 | Bacteria | 4687 |
| 41 | Ga0070665_100063795 | 3300005548 | Bacteria | 3694 |
| 42 | Ga0070665_100332177 | 3300005548 | Bacteria | 1525 |
| 43 | Ga0068856_100069018 | 3300005614 | Bacteria | 3495 |
| 44 | Ga0068856_100373987 | 3300005614 | Bacteria | 1444 |
| 45 | Ga0068852_100029652 | 3300005616 | Bacteria | 4497 |
| 46 | Ga0081540_1002167 | 3300005983 | Bacteria | 16271 |
| 47 | Ga0075364_10000838 | 3300006051 | Bacteria | 16200 |
| 48 | Ga0075364_10167343 | 3300006051 | Bacteria | 1485 |
| 49 | Ga0075366_10133941 | 3300006195 | Bacteria | 1496 |
| 50 | Ga0105240_10115831 | 3300009093 | Bacteria | 3234 |
| 51 | Ga0105240_10347269 | 3300009093 | Bacteria | 1684 |
| 52 | Ga0105248_10000216 | 3300009177 | Bacteria | 66621 |
| 53 | Ga0105237_10012482 | 3300009545 | Bacteria | 8953 |
| 54 | Ga0105237_10188720 | 3300009545 | Bacteria | 2061 |
| 55 | Ga0105238_10231619 | 3300009551 | Bacteria | 1824 |
| 56 | Ga0105249_10000175 | 3300009553 | Bacteria | 74934 |
| 57 | Ga0105239_10106349 | 3300010375 | Bacteria | 3108 |
| 58 | Ga0105246_10495005 | 3300011119 | Bacteria | 1037 |
| 59 | Ga0157380_10156027 | 3300014326 | Bacteria | 1978 |
| 60 | Ga0182006_1015162 | 3300015261 | Bacteria | 3307 |
| 61 | Ga0163161_10005133 | 3300017792 | Bacteria | 9106 |
| 62 | Ga0163161_10064166 | 3300017792 | Bacteria | 2679 |
| 63 | Ga0207425_1000028 | 3300025245 | Bacteria | 286333 |
| 64 | Ga0209129_1000065 | 3300025258 | Bacteria | 232568 |
| 65 | Ga0209129_1001465 | 3300025258 | Bacteria | 13165 |
| 66 | Ga0209565_1000024 | 3300025263 | Bacteria | 379907 |
| 67 | Ga0209673_1000237 | 3300025273 | Bacteria | 106342 |
| 68 | Ga0209673_1005795 | 3300025273 | Bacteria | 6137 |
| 69 | Ga0209675_1000107 | 3300025291 | Bacteria | 119593 |
| 70 | Ga0209675_1008710 | 3300025291 | Bacteria | 3679 |
| 71 | Ga0209675_1011416 | 3300025291 | Bacteria | 2947 |
| 72 | Ga0209676_1002012 | 3300025292 | Bacteria | 16026 |
| 73 | Ga0209676_1004263 | 3300025292 | Bacteria | 8066 |
| 74 | Ga0209676_1007424 | 3300025292 | Bacteria | 5148 |
| 75 | Ga0209676_1013632 | 3300025292 | Bacteria | 3113 |
| 76 | Ga0209025_1000002 | 3300025294 | Bacteria | 1393142 |
| 77 | Ga0209025_1002285 | 3300025294 | Bacteria | 20863 |
| 78 | Ga0209025_1032758 | 3300025294 | Bacteria | 2421 |
| 79 | Ga0209564_1000422 | 3300025295 | Bacteria | 74531 |
| 80 | Ga0209564_1009272 | 3300025295 | Bacteria | 4712 |
| 81 | Ga0209758_1000003 | 3300025297 | Bacteria | 1398533 |
| 82 | Ga0209758_1014391 | 3300025297 | Bacteria | 4211 |
| 83 | Ga0209758_1020426 | 3300025297 | Bacteria | 3134 |
| 84 | Ga0209050_1000653 | 3300025298 | Bacteria | 53609 |
| 85 | Ga0209050_1008058 | 3300025298 | Bacteria | 5726 |
| 86 | Ga0209256_1002243 | 3300025299 | Bacteria | 16442 |
| 87 | Ga0209256_1002340 | 3300025299 | Bacteria | 15807 |
| 88 | Ga0209256_1009746 | 3300025299 | Bacteria | 4148 |
| 89 | Ga0209257_1000349 | 3300025304 | Bacteria | 95064 |
| 90 | Ga0209257_1000828 | 3300025304 | Bacteria | 44672 |
| 91 | Ga0209257_1002788 | 3300025304 | Bacteria | 16480 |
| 92 | Ga0209257_1003052 | 3300025304 | Bacteria | 15092 |
| 93 | Ga0209257_1005882 | 3300025304 | Bacteria | 8276 |
| 94 | Ga0209257_1007993 | 3300025304 | Bacteria | 6179 |
| 95 | Ga0209257_1029140 | 3300025304 | Bacteria | 1803 |
| 96 | Ga0207688_10176613 | 3300025901 | Bacteria | 1272 |
| 97 | Ga0207680_10040601 | 3300025903 | Bacteria | 2709 |
| 98 | Ga0207647_10032846 | 3300025904 | Bacteria | 3329 |
| 99 | Ga0207647_10092488 | 3300025904 | Bacteria | 1803 |
| 100 | Ga0207671_10015080 | 3300025914 | Bacteria | 6073 |
| 101 | Ga0207644_10059948 | 3300025931 | Bacteria | 2753 |
| 102 | Ga0207706_10003996 | 3300025933 | Bacteria | 13970 |
| 103 | Ga0207669_10024503 | 3300025937 | Bacteria | 3244 |
| 104 | Ga0207711_10002494 | 3300025941 | Bacteria | 16420 |
| 105 | Ga0207679_10216300 | 3300025945 | Bacteria | 1610 |
| 106 | Ga0207712_10000223 | 3300025961 | Bacteria | 55710 |
| 107 | Ga0207658_10000148 | 3300025986 | Bacteria | 73530 |
| 108 | Ga0207658_10002375 | 3300025986 | Bacteria | 13805 |
| 109 | Ga0207639_10007410 | 3300026041 | Bacteria | 7481 |
| 110 | Ga0207678_10002438 | 3300026067 | Bacteria | 16905 |
| 111 | Ga0207683_10360006 | 3300026121 | Bacteria | 1336 |
| 112 | Ga0268266_10000001 | 3300028379 | Bacteria | 4040580 |
| 113 | Ga0268266_10114120 | 3300028379 | Bacteria | 2397 |
| 114 | Ga0307410_10130235 | 3300031852 | Bacteria | 1847 |
| 115 | Ga0307409_100023014 | 3300031995 | Bacteria | 4308 |
| 116 | Ga0307416_100440389 | 3300032002 | Bacteria | 1353 |
| 117 | Ga0307414_10247458 | 3300032004 | Bacteria | 1480 |
| 118 | Ga0373959_0017337 | 3300034820 | Bacteria | 1344 |
| 119 | Ga0237819_00129 | 3300038705 | Bacteria | 28352 |
| 120 | Ga0237816_00063 | 3300039145 | Bacteria | 7250 |
| 121 | Ga0451806_182840 | 3300041462 | Bacteria | 3116 |
| 122 | Ga0439448_0000284 | 3300042005 | Bacteria | 11120 |
| 123 | Ga0439448_0001125 | 3300042005 | Bacteria | 6747 |
| 124 | Ga0439448_0010970 | 3300042005 | Bacteria | 2695 |
| 125 | Ga0439448_0075800 | 3300042005 | Bacteria | 1125 |
| 126 | Ga0439450_047116 | 3300042008 | Bacteria | 1015 |
| 127 | Ga0439455_0000233 | 3300042012 | Bacteria | 6647 |
| 128 | Ga0439455_0001807 | 3300042012 | Bacteria | 3725 |
| 129 | Ga0439455_0008048 | 3300042012 | Bacteria | 2249 |
| 130 | Ga0439455_0024714 | 3300042012 | Bacteria | 1455 |
| 131 | Ga0439458_0000334 | 3300042157 | Bacteria | 11790 |
| 132 | Ga0439458_0011876 | 3300042157 | Bacteria | 1950 |
| 133 | Ga0451576_0021070 | 3300045051 | Bacteria | 7089 |
| 134 | Ga0495627_003971 | 3300046453 | Bacteria | 6314 |
| 135 | Ga0495638_0006971 | 3300046460 | Bacteria | 8159 |
| 136 | Ga0495638_0025929 | 3300046460 | Bacteria | 3805 |
| 137 | Ga0495650_0000001 | 3300046471 | Bacteria | 1085492 |
| 138 | Ga0495605_0083780 | 3300046474 | Bacteria | 1488 |
| 139 | Ga0495607_0029855 | 3300046501 | Bacteria | 3353 |
| 140 | Ga0495583_0000358 | 3300046506 | Bacteria | 71745 |
| 141 | Ga0495606_0010271 | 3300046507 | Bacteria | 7796 |
| 142 | Ga0495606_0053484 | 3300046507 | Bacteria | 2620 |
| 143 | Ga0495610_0000068 | 3300046512 | Bacteria | 122949 |
| 144 | Ga0495637_0022689 | 3300046520 | Bacteria | 2860 |
| 145 | Ga0495643_0000086 | 3300046522 | Bacteria | 156793 |
| 146 | Ga0495648_0045191 | 3300046524 | Bacteria | 2742 |
| 147 | Ga0495648_0061375 | 3300046524 | Bacteria | 2233 |
| 148 | Ga0495652_0058364 | 3300046529 | Bacteria | 3267 |
| 149 | Ga0495587_0081584 | 3300046536 | Bacteria | 1874 |
| 150 | Ga0495597_0000019 | 3300046542 | Bacteria | 164636 |
| 151 | Ga0495645_0004055 | 3300046543 | Bacteria | 10000 |
| 152 | Ga0495633_0016017 | 3300046558 | Bacteria | 3877 |
| 153 | Ga0495625_0001325 | 3300046660 | Bacteria | 30782 |
| 154 | Ga0495625_0018074 | 3300046660 | Bacteria | 5510 |
| 155 | Ga0495635_0146679 | 3300046663 | Bacteria | 1606 |
| 156 | Ga0495599_0200980 | 3300046678 | Bacteria | 1224 |
| 157 | Ga0495623_0015360 | 3300046679 | Bacteria | 4948 |
| 158 | Ga0495670_0026372 | 3300046691 | Bacteria | 2876 |
| 159 | Ga0495671_0015785 | 3300046692 | Bacteria | 4042 |
| 160 | Ga0495600_0092778 | 3300046809 | Bacteria | 1969 |
| 161 | Ga0495604_0048070 | 3300047317 | Bacteria | 3319 |
| 162 | Ga0495672_0000006 | 3300047320 | Bacteria | 589807 |
| 163 | Ga0495672_0094721 | 3300047320 | Bacteria | 1632 |
| 164 | Ga0495673_0024937 | 3300047469 | Bacteria | 2879 |
| 165 | Ga0495681_0000155 | 3300047470 | Bacteria | 57469 |
| 166 | Ga0495686_0000092 | 3300047472 | Bacteria | 189292 |
| 167 | Ga0495686_0000300 | 3300047472 | Bacteria | 85146 |
| 168 | Ga0495686_0002745 | 3300047472 | Bacteria | 16093 |
| 169 | Ga0495686_0012217 | 3300047472 | Bacteria | 6014 |
| 170 | Ga0495686_0014667 | 3300047472 | Bacteria | 5389 |
| 171 | Ga0495602_0128527 | 3300048088 | Bacteria | 2025 |
| 172 | Ga0496111_0064759 | 3300048914 | Bacteria | 2652 |
| 173 | Ga0496113_0179593 | 3300048916 | Bacteria | 1678 |
| 174 | Ga0496114_0003437 | 3300048917 | Bacteria | 12148 |
| 175 | Ga0496115_0000128 | 3300048918 | Bacteria | 68615 |
| 176 | Ga0496116_0014847 | 3300048919 | Bacteria | 6190 |
| 177 | Ga0496117_0002818 | 3300048920 | Bacteria | 21156 |
| 178 | Ga0496118_0000382 | 3300048921 | Bacteria | 74559 |
| 179 | Ga0496118_0001211 | 3300048921 | Bacteria | 39688 |
| 180 | Ga0496118_0010639 | 3300048921 | Bacteria | 9082 |
| 181 | Ga0496118_0035304 | 3300048921 | Bacteria | 4062 |
| 182 | Ga0496119_0032671 | 3300048922 | Bacteria | 3465 |
| 183 | Ga0496121_0044387 | 3300048924 | Bacteria | 3835 |
| 184 | Ga0496121_0121881 | 3300048924 | Bacteria | 1968 |
| 185 | Ga0496121_0133945 | 3300048924 | Bacteria | 1849 |
| 186 | Ga0496122_0000129 | 3300048925 | Bacteria | 173688 |
| 187 | Ga0496122_0003960 | 3300048925 | Bacteria | 18921 |
| 188 | Ga0496122_0004763 | 3300048925 | Bacteria | 16612 |
| 189 | Ga0496122_0007409 | 3300048925 | Bacteria | 12213 |
| 190 | Ga0496122_0025348 | 3300048925 | Bacteria | 5153 |
| 191 | Ga0496123_0000113 | 3300048926 | Bacteria | 163689 |
| 192 | Ga0496123_0002155 | 3300048926 | Bacteria | 25154 |
| 193 | Ga0496123_0004253 | 3300048926 | Bacteria | 15246 |
| 194 | Ga0496123_0004320 | 3300048926 | Bacteria | 15078 |
| 195 | Ga0496124_0000032 | 3300048927 | Bacteria | 332524 |
| 196 | Ga0496125_0036536 | 3300048928 | Bacteria | 4286 |
| 197 | Ga0496126_0025787 | 3300048929 | Bacteria | 5648 |
| 198 | Ga0496126_0034205 | 3300048929 | Bacteria | 4775 |
| 199 | Ga0496126_0059931 | 3300048929 | Bacteria | 3426 |
| 200 | Ga0496126_0075068 | 3300048929 | Bacteria | 3001 |
| 201 | Ga0495678_041698 | 3300049459 | Bacteria | 1834 |
| 202 | Ga0495682_0021163 | 3300049460 | Bacteria | 2438 |
| 203 | Ga0501033_0028964 | 3300049570 | Bacteria | 4161 |
| 204 | Ga0501034_0000545 | 3300049571 | Bacteria | 59955 |
| 205 | Ga0501034_0001186 | 3300049571 | Bacteria | 35964 |
| 206 | Ga0501038_0109735 | 3300049574 | Bacteria | 2286 |
| 207 | Ga0501038_0152994 | 3300049574 | Bacteria | 1880 |
| 208 | Ga0501043_0006021 | 3300049579 | Bacteria | 9752 |
| 209 | Ga0501044_0013590 | 3300049823 | Bacteria | 8798 |
| 210 | nmdc:mga00v17_119_c1 | 3300050491 | Bacteria | 46532 |
| 211 | nmdc:mga07m45_27594_c1 | 3300050496 | Bacteria | 3129 |
| 212 | Ga0500643_001660 | 3300053087 | Bacteria | 12400 |
| 213 | Ga0500643_037532 | 3300053087 | Bacteria | 1442 |
| 214 | Ga0500555_000174 | 3300053103 | Bacteria | 29409 |
| 215 | Ga0500597_000051 | 3300053120 | Bacteria | 23267 |
| 216 | Ga0500618_000842 | 3300053125 | Bacteria | 16615 |
| 217 | Ga0500622_0003241 | 3300053156 | Bacteria | 11057 |
| 218 | Ga0500634_0000497 | 3300053161 | Bacteria | 12758 |
| 219 | 2952254538 | 2952252522 | Bacteria | 4171745 |
| 220 | 2595450969 | 2593339239 | Bacteria | 4124669 |
| 221 | 2748017302 | 2747842501 | Bacteria | 5293829 |
| 222 | 2792459125 | 2791355048 | Bacteria | 5832535 |
| 223 | 2842783492 | 2842780639 | Bacteria | 4337790 |
| 224 | 2843744954 | 2843744320 | Bacteria | 5659202 |
| 225 | 2849564323 | 2849560528 | Bacteria | 5393480 |
| 226 | 2849575440 | 2849573788 | Bacteria | 5421256 |
| 227 | 2851156801 | 2851153111 | Bacteria | 5542585 |
| 228 | 2884342622 | 2884338543 | Bacteria | 4610696 |
| 229 | 2898334179 | 2898329390 | Bacteria | 5168154 |
| 230 | 2919677454 | 2919675420 | Bacteria | 3969095 |
| 231 | 2939591647 | 2939589442 | Bacteria | 4214238 |
| 232 | 2974308820 | 2974307012 | Bacteria | 4172388 |
| 233 | 2977249539 | 2977247770 | Bacteria | 4160543 |
| 234 | 2984515972 | 2984514374 | Bacteria | 4172479 |
| 235 | 8003014836 | 8003014200 | Bacteria | 4059994 |
| 236 | JGI24739J22299_10019962 | |||
| 237 | JGI24739J22299_10019973 | |||
| 238 | JGI24735J21928_10007867 | |||
| 239 | JGI25152J39213_1000018 | |||
| 240 | JGI25150J39212_1000331 | |||
| 241 | JGI25151J46595_10000111 | |||
| 242 | JGI25153J46596_10000085 | |||
| 243 | rootH1_10114510 | |||
| 244 | rootH2_10178763 | |||
| 245 | Ga0006562J51391_1086243 | |||
| 246 | Ga0055526_1001627 | |||
| 247 | Ga0055526_1026163 | |||
| 248 | Ga0055537_1000244 | |||
| 249 | Ga0055524_1002716 | |||
| 250 | Ga0055524_1002767 | |||
| 251 | Ga0055536_1008533 | |||
| 252 | Ga0055534_1000030 | |||
| 253 | Ga0055534_1000219 | |||
| 254 | Ga0055528_1000340 | |||
| 255 | Ga0055530_10001335 | |||
| 256 | Ga0055540_1030608 | |||
| 257 | Ga0055531_10003645 | |||
| 258 | Ga0055531_10004523 | |||
| 259 | Ga0055531_10005869 | |||
| 260 | Ga0055531_10013884 | |||
| 261 | Ga0065704_10072374 | |||
| 262 | Ga0070666_10052414 | |||
| 263 | Ga0070666_10188713 | |||
| 264 | Ga0070671_100024012 | |||
| 265 | Ga0070671_100072654 | |||
| 266 | Ga0070674_100013789 | |||
| 267 | Ga0070667_100000173 | |||
| 268 | Ga0070667_100000946 | |||
| 269 | Ga0070663_100000068 | |||
| 270 | Ga0070662_100130552 | |||
| 271 | Ga0068853_100005202 | |||
| 272 | Ga0070693_100012634 | |||
| 273 | Ga0070693_100103406 | |||
| 274 | Ga0070665_100000095 | |||
| 275 | Ga0070665_100040433 | |||
| 276 | Ga0070665_100063795 | |||
| 277 | Ga0070665_100332177 | |||
| 278 | Ga0068856_100069018 | |||
| 279 | Ga0068856_100373987 | |||
| 280 | Ga0068852_100029652 | |||
| 281 | Ga0081540_1002167 | |||
| 282 | Ga0075364_10000838 | |||
| 283 | Ga0075364_10167343 | |||
| 284 | Ga0075366_10133941 | |||
| 285 | Ga0105240_10115831 | |||
| 286 | Ga0105240_10347269 | |||
| 287 | Ga0105248_10000216 | |||
| 288 | Ga0105237_10012482 | |||
| 289 | Ga0105237_10188720 | |||
| 290 | Ga0105238_10231619 | |||
| 291 | Ga0105249_10000175 | |||
| 292 | Ga0105239_10106349 | |||
| 293 | Ga0105246_10495005 | |||
| 294 | Ga0157380_10156027 | |||
| 295 | Ga0182006_1015162 | |||
| 296 | Ga0163161_10005133 | |||
| 297 | Ga0163161_10064166 | |||
| 298 | Ga0207425_1000028 | |||
| 299 | Ga0209129_1000065 | |||
| 300 | Ga0209129_1001465 | |||
| 301 | Ga0209565_1000024 | |||
| 302 | Ga0209673_1000237 | |||
| 303 | Ga0209673_1005795 | |||
| 304 | Ga0209675_1000107 | |||
| 305 | Ga0209675_1008710 | |||
| 306 | Ga0209675_1011416 | |||
| 307 | Ga0209676_1002012 | |||
| 308 | Ga0209676_1004263 | |||
| 309 | Ga0209676_1007424 | |||
| 310 | Ga0209676_1013632 | |||
| 311 | Ga0209025_1000002 | |||
| 312 | Ga0209025_1002285 | |||
| 313 | Ga0209025_1032758 | |||
| 314 | Ga0209564_1000422 | |||
| 315 | Ga0209564_1009272 | |||
| 316 | Ga0209758_1000003 | |||
| 317 | Ga0209758_1014391 | |||
| 318 | Ga0209758_1020426 | |||
| 319 | Ga0209050_1000653 | |||
| 320 | Ga0209050_1008058 | |||
| 321 | Ga0209256_1002243 | |||
| 322 | Ga0209256_1002340 | |||
| 323 | Ga0209256_1009746 | |||
| 324 | Ga0209257_1000349 | |||
| 325 | Ga0209257_1000828 | |||
| 326 | Ga0209257_1002788 | |||
| 327 | Ga0209257_1003052 | |||
| 328 | Ga0209257_1005882 | |||
| 329 | Ga0209257_1007993 | |||
| 330 | Ga0209257_1029140 | |||
| 331 | Ga0207688_10176613 | |||
| 332 | Ga0207680_10040601 | |||
| 333 | Ga0207647_10032846 | |||
| 334 | Ga0207647_10092488 | |||
| 335 | Ga0207671_10015080 | |||
| 336 | Ga0207644_10059948 | |||
| 337 | Ga0207706_10003996 | |||
| 338 | Ga0207669_10024503 | |||
| 339 | Ga0207711_10002494 | |||
| 340 | Ga0207679_10216300 | |||
| 341 | Ga0207712_10000223 | |||
| 342 | Ga0207658_10000148 | |||
| 343 | Ga0207658_10002375 | |||
| 344 | Ga0207639_10007410 | |||
| 345 | Ga0207678_10002438 | |||
| 346 | Ga0207683_10360006 | |||
| 347 | Ga0268266_10000001 | |||
| 348 | Ga0268266_10114120 | |||
| 349 | Ga0307410_10130235 | |||
| 350 | Ga0307409_100023014 | |||
| 351 | Ga0307416_100440389 | |||
| 352 | Ga0307414_10247458 | |||
| 353 | Ga0373959_0017337 | |||
| 354 | Ga0237819_00129 | |||
| 355 | Ga0237816_00063 | |||
| 356 | Ga0451806_182840 | |||
| 357 | Ga0439448_0000284 | |||
| 358 | Ga0439448_0001125 | |||
| 359 | Ga0439448_0010970 | |||
| 360 | Ga0439448_0075800 | |||
| 361 | Ga0439450_047116 | |||
| 362 | Ga0439455_0000233 | |||
| 363 | Ga0439455_0001807 | |||
| 364 | Ga0439455_0008048 | |||
| 365 | Ga0439455_0024714 | |||
| 366 | Ga0439458_0000334 | |||
| 367 | Ga0439458_0011876 | |||
| 368 | Ga0451576_0021070 | |||
| 369 | Ga0495627_003971 | |||
| 370 | Ga0495638_0006971 | |||
| 371 | Ga0495638_0025929 | |||
| 372 | Ga0495650_0000001 | |||
| 373 | Ga0495605_0083780 | |||
| 374 | Ga0495607_0029855 | |||
| 375 | Ga0495583_0000358 | |||
| 376 | Ga0495606_0010271 | |||
| 377 | Ga0495606_0053484 | |||
| 378 | Ga0495610_0000068 | |||
| 379 | Ga0495637_0022689 | |||
| 380 | Ga0495643_0000086 | |||
| 381 | Ga0495648_0045191 | |||
| 382 | Ga0495648_0061375 | |||
| 383 | Ga0495652_0058364 | |||
| 384 | Ga0495587_0081584 | |||
| 385 | Ga0495597_0000019 | |||
| 386 | Ga0495645_0004055 | |||
| 387 | Ga0495633_0016017 | |||
| 388 | Ga0495625_0001325 | |||
| 389 | Ga0495625_0018074 | |||
| 390 | Ga0495635_0146679 | |||
| 391 | Ga0495599_0200980 | |||
| 392 | Ga0495623_0015360 | |||
| 393 | Ga0495670_0026372 | |||
| 394 | Ga0495671_0015785 | |||
| 395 | Ga0495600_0092778 | |||
| 396 | Ga0495604_0048070 | |||
| 397 | Ga0495672_0000006 | |||
| 398 | Ga0495672_0094721 | |||
| 399 | Ga0495673_0024937 | |||
| 400 | Ga0495681_0000155 | |||
| 401 | Ga0495686_0000092 | |||
| 402 | Ga0495686_0000300 | |||
| 403 | Ga0495686_0002745 | |||
| 404 | Ga0495686_0012217 | |||
| 405 | Ga0495686_0014667 | |||
| 406 | Ga0495602_0128527 | |||
| 407 | Ga0496111_0064759 | |||
| 408 | Ga0496113_0179593 | |||
| 409 | Ga0496114_0003437 | |||
| 410 | Ga0496115_0000128 | |||
| 411 | Ga0496116_0014847 | |||
| 412 | Ga0496117_0002818 | |||
| 413 | Ga0496118_0000382 | |||
| 414 | Ga0496118_0001211 | |||
| 415 | Ga0496118_0010639 | |||
| 416 | Ga0496118_0035304 | |||
| 417 | Ga0496119_0032671 | |||
| 418 | Ga0496121_0044387 | |||
| 419 | Ga0496121_0121881 | |||
| 420 | Ga0496121_0133945 | |||
| 421 | Ga0496122_0000129 | |||
| 422 | Ga0496122_0003960 | |||
| 423 | Ga0496122_0004763 | |||
| 424 | Ga0496122_0007409 | |||
| 425 | Ga0496122_0025348 | |||
| 426 | Ga0496123_0000113 | |||
| 427 | Ga0496123_0002155 | |||
| 428 | Ga0496123_0004253 | |||
| 429 | Ga0496123_0004320 | |||
| 430 | Ga0496124_0000032 | |||
| 431 | Ga0496125_0036536 | |||
| 432 | Ga0496126_0025787 | |||
| 433 | Ga0496126_0034205 | |||
| 434 | Ga0496126_0059931 | |||
| 435 | Ga0496126_0075068 | |||
| 436 | Ga0495678_041698 | |||
| 437 | Ga0495682_0021163 | |||
| 438 | Ga0501033_0028964 | |||
| 439 | Ga0501034_0000545 | |||
| 440 | Ga0501034_0001186 | |||
| 441 | Ga0501038_0109735 | |||
| 442 | Ga0501038_0152994 | |||
| 443 | Ga0501043_0006021 | |||
| 444 | Ga0501044_0013590 | |||
| 445 | nmdc:mga00v17_119_c1 | |||
| 446 | nmdc:mga07m45_27594_c1 | |||
| 447 | Ga0500643_001660 | |||
| 448 | Ga0500643_037532 | |||
| 449 | Ga0500555_000174 | |||
| 450 | Ga0500597_000051 | |||
| 451 | Ga0500618_000842 | |||
| 452 | Ga0500622_0003241 | |||
| 453 | Ga0500634_0000497 | |||
| 454 | 2952254538 | |||
| 455 | 2595450969 | |||
| 456 | 2748017302 | |||
| 457 | 2792459125 | |||
| 458 | 2842783492 | |||
| 459 | 2843744954 | |||
| 460 | 2849564323 | |||
| 461 | 2849575440 | |||
| 462 | 2851156801 | |||
| 463 | 2884342622 | |||
| 464 | 2898334179 | |||
| 465 | 2919677454 | |||
| 466 | 2939591647 | |||
| 467 | 2974308820 | |||
| 468 | 2977249539 | |||
| 469 | 2984515972 | |||
| 470 | 8003014836 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 6d51-assembly1.cif.gz_A | crystal structure of l,d-transpeptidase 3 from mycobacterium tuberculosis in complex with a faropenem-derived adduct | 0.8649 | 57 | 168 |
| 4a1i-assembly1.cif.gz_A | ykud from b.subtilis | 0.8514 | 58 | 168 |
| 4k73-assembly1.cif.gz_A | x-ray crystal structure of an l,d-transpeptidase from mycobacterium tuberculosis h37rv | 0.8512 | 57 | 168 |
| 6d4k-assembly1.cif.gz_A | crystal structure of l,d-transpeptidase 3 from mycobacterium tuberculosis at 1.32 a resolution | 0.8451 | 57 | 168 |
| 4jmx-assembly1.cif.gz_A | structure of ld transpeptidase ldtmt1 in complex with imipenem | 0.8294 | 57 | 168 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 6d51A02 | Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like | 0.8624 | 59 | 168 | 2.40.440.10 |
| 4a1iC02 | Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like | 0.8487 | 58 | 168 | 2.40.440.10 |
| 4jmxA02 | Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like | 0.8276 | 59 | 168 | 2.40.440.10 |
| 4a1iC02 | Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like | 0.7881 | 58 | 168 | 2.40.440.10 |
| 3zgpA00 | Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like | 0.7775 | 57 | 168 | 2.40.440.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A558QY02-F1-model_v4 | L,D-transpeptidase family protein | 0.9005 | 41 | 170 |
GO:0005576
GO:0008360 GO:0016740 GO:0018104 GO:0071555 GO:0071972 |
| AF-A0A0Q4K0S9-F1-model_v4 | deleted | 0.8969 | 42 | 168 |
|
| AF-A0A6J4TYS2-F1-model_v4 | L,D-TPase catalytic domain-containing protein | 0.8953 | 42 | 168 |
GO:0005576
GO:0008360 GO:0016740 GO:0018104 GO:0071555 GO:0071972 |
| AF-A0A147IZZ4-F1-model_v4 | L,D-TPase catalytic domain-containing protein | 0.8923 | 42 | 172 |
GO:0005576
GO:0008360 GO:0016740 GO:0018104 GO:0071555 GO:0071972 |
| AF-A0A840Z7Y2-F1-model_v4 | L,D-TPase catalytic domain-containing protein | 0.8906 | 42 | 170 |
GO:0005576
GO:0008360 GO:0016740 GO:0018104 GO:0071555 GO:0071972 |