F349580

General Info

Members Datasets Scaffolds Average Seq Length
236 193 185 671

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2945941187|2945943854
Length 752
Sequence PHMPQSAAEPAPFNPAQFDPALFNTVLVANRGEIACRVIRTLRTLGIRSVAVYSEADAGARHVREADTAVLIGPAAASESYLKTEAIIQACRDTGADAVHPGYGFLSENVDFARALEKAGITFIGPGVEALNIMGDKIRSKNHVAGYGVPVVPGIARPGLTDAELAEAASGVGFPLLIKPSAGGGGKGMHVVERPEELQATLAAARRVAASAFGDDTLFLERLIKAPRHIEVQVLADNHGNVIFLGERECSLQRRHQKVIEEAPSPLLESLDNGGATRARIGEAACNAARSVNYRGAGTVEFLVSDDAPDEFFFMEMNTRLQVEHPVTEMVTGVDLVEWQVRIAAGEQLTVAQADVVLNGHAVEARVYAEVPERNFLPSAGEVVLLDERGSLTGSHHGRTQAPADPAVRIDSSLLAGLMISSDYDPMVSKVIAWGQDRGAALDKLDEALGRYTVLGIDTNVEYLRLLINDPDVRAGRLDTGLIERKMPHFSFRQVGDAELIAAAMQLRILAGPPASVHSPWNTVEGWRLGTRAPWTKSFGVPDGTMSTVAVTWQGNSGTGDARVRVNGGAEHLVNVIGLSDDNVFLEIDGGELRFALGPPLQESPREGNPLTVYVGNGGWSCRLEVLTRESRLARVLAAIEREEGTADPAVRSPMPGTVVSVPVRDGDTVKAGQVLLSVEAMKMEHQLLAPLDGTVHISIRSGDLVKVDQVVATIHPETPPGTGPAAGDPTNGDPTNADPTNGDPTTTGKGA

Samples

Sample ID Description Type Environment
1 2508501050 Microvirga lupini Lut6 Isolate Nodule
2 2508501114 Microvirga lotononidis WSM3557 Isolate Nodule
3 2513237101 Bradyrhizobium murdochi WSM1741 Isolate Nodule
4 2513237141 Bradyrhizobium sp. TV2a.2 Isolate Nodule
5 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
6 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
7 2643221599 Rhizobium sp. Root708 Isolate Unclassified
8 2643221622 Sphingomonas sp. Root241 Isolate Unclassified
9 2643221736 Bosea sp. Root483D1 Isolate Unclassified
10 2690315906 Arthrobacter sp. OY3WO11 Isolate Unclassified
11 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
12 2738541293 Rhizobium sp. GV031 Isolate Unclassified
13 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
14 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
15 2791355199
16 2835312727 Microvirga calopogonii CCBAU 65841 Isolate Nodule
17 2841760612 Bosea sp. Tri-49 Isolate Nodule
18 2842698319 Methylobacterium sp. R-72139 Isolate Unclassified
19 2844104063 Bosea sp. Tri-39 Isolate Nodule
20 2844849076 Arthrobacter cupressi DSM 24664 Isolate Rhizosphere
21 2851182111 Bosea sp. Tri-44 Isolate Nodule
22 2851246043 Bosea sp. Tri-54 Isolate Nodule
23 2857524615 Tardiphaga sp. R-73074 Isolate Unclassified
24 2861691609 Methylorubrum thiocyanatum DSM 11490 Isolate Rhizosphere
25 2876808645 Bradyrhizobium algeriense RST89 Isolate Unclassified
26 2879110137 Bradyrhizobium algeriense RST91 Isolate Nodule
27 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
28 2889033259 Bradyrhizobium sp. CCBAU 051011 Isolate Unclassified
29 2894232714 Microvirga tunisiensis Lmie10 Isolate Nodule
30 2917699015 Bosea sp. F3-2 Isolate Rhizosphere
31 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
32 2919679072 Pseudotabrizicola sp. 4114 Isolate Unclassified
33 2922361189 Bradyrhizobium australiense WSM 1791 Isolate Nodule
34 2922386360 Bradyrhizobium archetypum WSM 1744 Isolate Nodule
35 2932794094 Bradyrhizobium sp. S3.2.6 Isolate Nodule
36 2932801729 Bradyrhizobium sp. S3.3.6 Isolate Nodule
37 2935883170 Bradyrhizobium sp. S3.12.5 Isolate Nodule
38 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
39 2945941187 Arthrobacter pascens W1I14 Isolate Rhizosphere
40 2974302888 Pseudarthrobacter sp. SORGH_AS 212 Isolate Unclassified
41 3005710791 Bradyrhizobium genosp. B BDV5040 Isolate Unclassified
42 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
43 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
44 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
45 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
46 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
47 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
48 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
49 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
50 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
51 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
52 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
53 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
54 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
55 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
56 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
57 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
58 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
59 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
60 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
61 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
62 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
63 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
64 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
65 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
66 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
67 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
68 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
69 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
70 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
72 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
73 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
75 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
76 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
77 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
92 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
93 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
95 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
96 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
97 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
98 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
99 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
100 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
101 3300033544 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5 Metagenome Unclassified
102 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
103 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
104 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
105 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
106 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
107 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
108 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
109 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
110 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
111 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
112 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
113 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
114 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
115 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
116 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
117 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
118 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
119 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
120 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
121 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
122 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
123 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
124 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
125 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
126 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
127 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
128 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
129 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
130 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
131 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
132 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
133 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
134 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
135 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
136 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
137 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
138 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
139 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
140 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
141 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
142 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
143 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
144 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
145 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
146 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
147 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
148 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
149 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
150 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
151 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
152 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
153 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
154 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
155 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
156 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
157 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
158 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
159 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
160 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
161 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
162 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
163 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
164 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
165 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
166 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
167 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
168 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
169 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
170 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
171 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
172 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
173 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
174 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
175 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
176 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
177 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
178 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
179 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
180 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
181 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
182 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
183 3300053159 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 endosphere Metagenome Endosphere
184 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
185 641522639 Methylobacterium sp. 4-46 Isolate Nodule
186 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
187 8006964411 Bradyrhizobium sp. sBnM-33 Isolate Nodule
188 8006994254 Bradyrhizobium sp. sGM-13 Isolate Nodule
189 8016603502 Bradyrhizobium sp. LB7.2 Isolate Nodule
190 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere
191 8056673599 Bradyrhizobium hereditatis WSM 1738 Isolate Nodule
192 8056967851 Bradyrhizobium zhengyangense WYCCWR 12678 Isolate Nodule
193 8057529695 Bosea vestrisii A18/4-2 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 78.72
Metatranscriptomes 0
Isolates 21.28

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.44
Nodule 11.44
Rhizoplane 2.54
Rhizosphere 56.78
Stem 0
Stem Tuber 0
Unclassified 17.8

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJQas_1000494 3300000549 Bacteria 6537
2 JGI25153J46596_10017597 3300003215 Bacteria 2810
3 Ga0055526_1000275 3300003771 Bacteria 43477
4 Ga0055526_1000920 3300003771 Bacteria 21832
5 Ga0055524_1000592 3300003775 Bacteria 26266
6 Ga0065165_1000631 3300005262 Bacteria 51108
7 Ga0070683_100041208 3300005329 Bacteria 4247
8 Ga0070680_100001002 3300005336 Bacteria 20115
9 Ga0070680_100006205 3300005336 Bacteria 9066
10 Ga0070680_100019118 3300005336 Bacteria 5425
11 Ga0068868_100023509 3300005338 Bacteria 4665
12 Ga0070709_10002327 3300005434 Bacteria 10299
13 Ga0070710_10023447 3300005437 Bacteria 3244
14 Ga0070679_100000002 3300005530 Bacteria 312066
15 Ga0070684_100003916 3300005535 Bacteria 11280
16 Ga0070665_100001701 3300005548 Bacteria 25284
17 Ga0068856_100004294 3300005614 Bacteria 14224
18 Ga0068859_100068100 3300005617 Bacteria 3595
19 Ga0081455_10009514 3300005937 Bacteria 9987
20 Ga0081540_1000668 3300005983 Bacteria 32289
21 Ga0081540_1000834 3300005983 Bacteria 28102
22 Ga0081540_1001804 3300005983 Bacteria 17954
23 Ga0081540_1006721 3300005983 Bacteria 8318
24 Ga0081540_1010765 3300005983 Bacteria 6153
25 Ga0081540_1033500 3300005983 Bacteria 2788
26 Ga0070717_10004761 3300006028 Bacteria 9866
27 Ga0075432_10003886 3300006058 Bacteria 5090
28 Ga0070712_100006592 3300006175 Bacteria 7211
29 Ga0097620_100068101 3300006931 Bacteria 3595
30 Ga0105240_10077874 3300009093 Bacteria 4084
31 Ga0105240_10127990 3300009093 Bacteria 3049
32 Ga0105245_10000430 3300009098 Bacteria 39014
33 Ga0114129_10036166 3300009147 Bacteria 6974
34 Ga0105248_10014556 3300009177 Bacteria 8659
35 Ga0105238_10032004 3300009551 Bacteria 5353
36 Ga0157369_10034259 3300013105 Bacteria 5575
37 Ga0213872_10008083 3300021361 Bacteria 5112
38 Ga0209148_1000803 3300025254 Bacteria 22974
39 Ga0209148_1001372 3300025254 Bacteria 12702
40 Ga0209148_1001987 3300025254 Bacteria 8096
41 Ga0209233_1002395 3300025261 Bacteria 6929
42 Ga0209130_1000375 3300025284 Bacteria 50482
43 Ga0209675_1003705 3300025291 Bacteria 7112
44 Ga0209025_1001241 3300025294 Bacteria 35462
45 Ga0209564_1000150 3300025295 Bacteria 170318
46 Ga0209256_1000108 3300025299 Bacteria 185884
47 Ga0207680_10036470 3300025903 Bacteria 2832
48 Ga0207699_10001804 3300025906 Bacteria 10060
49 Ga0207645_10010349 3300025907 Bacteria 6402
50 Ga0207707_10009479 3300025912 Bacteria 8442
51 Ga0207707_10118382 3300025912 Bacteria 2315
52 Ga0207693_10007440 3300025915 Bacteria 9005
53 Ga0207693_10023059 3300025915 Bacteria 4944
54 Ga0207660_10004203 3300025917 Bacteria 9371
55 Ga0207652_10000001 3300025921 Bacteria 1006643
56 Ga0207652_10000002 3300025921 Bacteria 878035
57 Ga0207652_10005005 3300025921 Bacteria 10734
58 Ga0207687_10001227 3300025927 Bacteria 17550
59 Ga0207691_10042682 3300025940 Bacteria 4179
60 Ga0207667_10011420 3300025949 Bacteria 10325
61 Ga0207712_10032746 3300025961 Bacteria 3510
62 Ga0207678_10004710 3300026067 Bacteria 12244
63 Ga0207702_10000365 3300026078 Bacteria 51814
64 Ga0207675_100037862 3300026118 Bacteria 4500
65 Ga0209389_1000003 3300027296 Bacteria 268927
66 Ga0207428_10016761 3300027907 Bacteria 6300
67 Ga0268266_10002007 3300028379 Bacteria 22753
68 Ga0268266_10003537 3300028379 Bacteria 15508
69 Ga0265325_10048608 3300031241 Bacteria 2192
70 Ga0307408_100038074 3300031548 Bacteria 3391
71 Ga0307405_10007168 3300031731 Bacteria 5548
72 Ga0307412_10004484 3300031911 Bacteria 7784
73 Ga0307416_100007128 3300032002 Bacteria 7068
74 Ga0307416_100042094 3300032002 Bacteria 3562
75 Ga0307415_100022650 3300032126 Bacteria 3882
76 Ga0307510_10037011 3300033180 Bacteria 5423
77 Ga0307510_10037748 3300033180 Bacteria 5355
78 Ga0316215_1000700 3300033544 Bacteria 3455
79 Ga0373936_0014766 3300035113 Bacteria 2989
80 Ga0373946_0032181 3300035171 Bacteria 2105
81 Ga0373933_0000276 3300035724 Bacteria 33468
82 Ga0373933_0066093 3300035724 Bacteria 2191
83 Ga0316584_0000835 3300036712 Bacteria 17382
84 Ga0373925_0004711 3300037068 Bacteria 10291
85 Ga0373925_0031714 3300037068 Bacteria 3886
86 Ga0395900_0045943 3300037418 Bacteria 4498
87 Ga0395898_0032726 3300037466 Bacteria 5191
88 Ga0395901_0029822 3300038443 Bacteria 5619
89 Ga0395901_0033117 3300038443 Bacteria 5332
90 Ga0395901_0079138 3300038443 Bacteria 3432
91 Ga0237819_00632 3300038705 Bacteria 11472
92 Ga0436365_0147566 3300039437 Bacteria 24744
93 Ga0436361_0581511 3300039447 Bacteria 21960
94 Ga0436363_0198704 3300039450 Bacteria 4922
95 Ga0436363_1068861 3300039450 Bacteria 5791
96 Ga0439465_0005349 3300041413 Bacteria 4099
97 Ga0439433_0000476 3300041999 Bacteria 7403
98 Ga0439442_001247 3300042002 Bacteria 5052
99 Ga0439449_0001381 3300042007 Bacteria 9491
100 Ga0439449_0001620 3300042007 Bacteria 8825
101 Ga0439457_001724 3300042014 Bacteria 6480
102 Ga0439462_0003782 3300042015 Bacteria 3651
103 Ga0450920_000245 3300042122 Bacteria 8094
104 Ga0439434_0000016 3300042435 Bacteria 43780
105 Ga0439434_0001676 3300042435 Bacteria 6417
106 Ga0450918_000939 3300042531 Bacteria 6093
107 Ga0466966_0041073 3300044684 Bacteria 2974
108 Ga0466961_0036074 3300044693 Bacteria 3174
109 Ga0453684_0000006 3300044712 Bacteria 1364191
110 Ga0453684_0000031 3300044712 Bacteria 752632
111 Ga0466968_0009115 3300044735 Bacteria 3814
112 Ga0466959_0005118 3300045049 Bacteria 8925
113 Ga0466959_0034601 3300045049 Bacteria 3737
114 Ga0495592_0018422 3300046454 Bacteria 5310
115 Ga0495629_0016170 3300046459 Bacteria 5355
116 Ga0495638_0012994 3300046460 Bacteria 5685
117 Ga0495651_0019599 3300046462 Bacteria 5246
118 Ga0495653_0022827 3300046463 Bacteria 5061
119 Ga0495582_0005192 3300046473 Bacteria 7284
120 Ga0495664_0010192 3300046477 Bacteria 5274
121 Ga0495664_0026233 3300046477 Bacteria 3394
122 Ga0495585_0029267 3300046492 Bacteria 3136
123 Ga0495665_0000376 3300046531 Bacteria 22499
124 Ga0495586_0006347 3300046535 Bacteria 6318
125 Ga0495586_0034221 3300046535 Bacteria 2728
126 Ga0495609_0031685 3300046538 Bacteria 2402
127 Ga0495645_0005296 3300046543 Bacteria 8837
128 Ga0495645_0050818 3300046543 Bacteria 3017
129 Ga0495622_0032526 3300046557 Bacteria 2435
130 Ga0495667_0014371 3300046559 Bacteria 5347
131 Ga0495634_0031743 3300046642 Bacteria 3636
132 Ga0495625_0000287 3300046660 Bacteria 78023
133 Ga0495635_0001874 3300046663 Bacteria 14248
134 Ga0495657_0004174 3300046675 Bacteria 11576
135 Ga0495657_0025611 3300046675 Bacteria 4187
136 Ga0495658_0045741 3300046683 Bacteria 2457
137 Ga0495613_0008927 3300046689 Bacteria 7439
138 Ga0495624_0011730 3300046690 Bacteria 6017
139 Ga0495600_0034511 3300046809 Bacteria 3284
140 Ga0495581_0005180 3300047315 Bacteria 7544
141 Ga0495604_0012673 3300047317 Bacteria 6708
142 Ga0495674_0052968 3300047319 Bacteria 3569
143 Ga0495680_0056692 3300047322 Bacteria 3032
144 Ga0495684_0003266 3300047471 Bacteria 12741
145 Ga0495593_0032265 3300047673 Bacteria 2856
146 Ga0495602_0040629 3300048088 Bacteria 4261
147 Ga0496104_0001696 3300048907 Bacteria 19029
148 Ga0496104_0010050 3300048907 Bacteria 8445
149 Ga0496105_0000992 3300048908 Bacteria 19571
150 Ga0496107_0010530 3300048910 Bacteria 6426
151 Ga0496107_0027655 3300048910 Bacteria 4028
152 Ga0496113_0041038 3300048916 Bacteria 3412
153 Ga0496118_0027386 3300048921 Bacteria 4825
154 Ga0496119_0001332 3300048922 Bacteria 30320
155 Ga0496119_0002507 3300048922 Bacteria 20068
156 Ga0496120_0003297 3300048923 Bacteria 14855
157 Ga0496121_0000616 3300048924 Bacteria 66339
158 Ga0496121_0043817 3300048924 Bacteria 3869
159 Ga0496122_0006463 3300048925 Bacteria 13444
160 Ga0496122_0021160 3300048925 Bacteria 5835
161 Ga0496122_0057064 3300048925 Bacteria 2904
162 Ga0496123_0001600 3300048926 Bacteria 30686
163 Ga0496125_0055738 3300048928 Bacteria 3217
164 Ga0496125_0065166 3300048928 Bacteria 2889
165 Ga0496125_0098333 3300048928 Bacteria 2165
166 Ga0496126_0002069 3300048929 Bacteria 28151
167 Ga0496126_0019852 3300048929 Bacteria 6608
168 Ga0496126_0137779 3300048929 Bacteria 2103
169 Ga0501046_0000045 3300049580 Bacteria 144492
170 Ga0501047_0019941 3300049581 Bacteria 6437
171 Ga0501048_0000994 3300049582 Bacteria 21111
172 nmdc:mga0yw44_9918_c1 3300050492 Bacteria 4841
173 nmdc:mga06z11_2296_c1 3300050494 Bacteria 7270
174 nmdc:mga07m45_7765_c1 3300050496 Bacteria 4710
175 Ga0495595_0012070 3300053084 Bacteria 3624
176 Ga0500566_0000017 3300053094 Bacteria 93636
177 Ga0500566_0001925 3300053094 Bacteria 12206
178 Ga0500640_000030 3300053095 Bacteria 21521
179 Ga0500641_0002832 3300053096 Bacteria 6143
180 Ga0500556_0000102 3300053104 Bacteria 76549
181 Ga0500595_003002 3300053119 Bacteria 8025
182 Ga0500642_0000077 3300053130 Bacteria 53422
183 Ga0500559_0000767 3300053136 Bacteria 21035
184 Ga0500630_000137 3300053159 Bacteria 25742
185 Ga0500639_000015 3300053163 Bacteria 119636

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046543 Ga0495645_0050818 Ga0495645_0050818_20_1699 523
2 3300048928 Ga0496125_0098333 Ga0496125_0098333_474_2153 523
3 3300031241 Ga0265325_10048608 Ga0265325_100486081 525
4 3300005983 Ga0081540_1033500 Ga0081540_10335001 559
5 3300042015 Ga0439462_0003782 Ga0439462_0003782_1749_3626 578
6 3300038705 Ga0237819_00632 Ga0237819_00632_6205_8187 588
7 iso_pu_bacteria 2876808645 2876812973 590
8 3300046538 Ga0495609_0031685 Ga0495609_0031685_506_2392 592
9 3300047322 Ga0495680_0056692 Ga0495680_0056692_1125_3011 592
10 3300009093 Ga0105240_10127990 Ga0105240_101279902 604
11 3300035171 Ga0373946_0032181 Ga0373946_0032181_66_2081 604
12 3300046459 Ga0495629_0016170 Ga0495629_0016170_3004_5019 604
13 3300046663 Ga0495635_0001874 Ga0495635_0001874_668_2683 604
14 3300046675 Ga0495657_0025611 Ga0495657_0025611_1573_3588 604
15 3300046689 Ga0495613_0008927 Ga0495613_0008927_1016_3031 604
16 3300046690 Ga0495624_0011730 Ga0495624_0011730_3582_5597 604
17 3300047317 Ga0495604_0012673 Ga0495604_0012673_4191_6206 604
18 3300048907 Ga0496104_0001696 Ga0496104_0001696_9337_11352 604
19 3300048908 Ga0496105_0000992 Ga0496105_0000992_4064_6079 604
20 3300048916 Ga0496113_0041038 Ga0496113_0041038_73_2088 604
21 3300048922 Ga0496119_0002507 Ga0496119_0002507_14326_16341 604
22 3300048923 Ga0496120_0003297 Ga0496120_0003297_9812_11827 604
23 3300048928 Ga0496125_0065166 Ga0496125_0065166_167_2182 604
24 3300048929 Ga0496126_0019852 Ga0496126_0019852_3098_5113 604
25 3300048907 Ga0496104_0010050 Ga0496104_0010050_4988_6919 607
26 3300033180 Ga0307510_10037011 Ga0307510_100370112 608
27 iso_pu_bacteria 2842698319 2842698353 608
28 3300044684 Ga0466966_0041073 Ga0466966_0041073_675_2678 612
29 3300045049 Ga0466959_0034601 Ga0466959_0034601_932_2935 612
30 3300048929 Ga0496126_0137779 Ga0496126_0137779_11_1957 612
31 3300009098 Ga0105245_10000430 Ga0105245_100004307 619
32 3300025927 Ga0207687_10001227 Ga0207687_100012277 619
33 3300036712 Ga0316584_0000835 Ga0316584_0000835_7955_9976 620
34 3300037418 Ga0395900_0045943 Ga0395900_0045943_2160_4121 621
35 3300038443 Ga0395901_0033117 Ga0395901_0033117_3110_5071 621
36 3300038443 Ga0395901_0079138 Ga0395901_0079138_1067_3028 621
37 3300041413 Ga0439465_0005349 Ga0439465_0005349_718_2724 621
38 3300042435 Ga0439434_0000016 Ga0439434_0000016_41015_43045 621
39 3300053094 Ga0500566_0001925 Ga0500566_0001925_3092_5098 621
40 3300048910 Ga0496107_0010530 Ga0496107_0010530_1914_3929 624
41 3300046660 Ga0495625_0000287 Ga0495625_0000287_23935_25953 625
42 3300005336 Ga0070680_100006205 Ga0070680_1000062053 626
43 3300009093 Ga0105240_10077874 Ga0105240_100778743 626
44 3300025921 Ga0207652_10005005 Ga0207652_100050053 626
45 3300025949 Ga0207667_10011420 Ga0207667_100114203 626
46 3300037466 Ga0395898_0032726 Ga0395898_0032726_3128_5158 626
47 iso_pu_bacteria 2522572158 2523105804 627
48 iso_pu_bacteria 2508501050 2508732680 628
49 iso_pu_bacteria 2508501114 2509078595 628
50 iso_pu_bacteria 2643221736 2644747714 628
51 iso_pu_bacteria 2775506901 2776259182 628
52 iso_pu_bacteria 2835312727 2835313654 628
53 iso_pu_bacteria 2835312727 2835314953 628
54 iso_pu_bacteria 2841760612 2841761418 628
55 iso_pu_bacteria 2844104063 2844104443 628
56 iso_pu_bacteria 2851182111 2851184491 628
57 iso_pu_bacteria 2851246043 2851247431 628
58 iso_pu_bacteria 2882456835 2882459726 628
59 iso_pu_bacteria 2894232714 2894233675 628
60 iso_pu_bacteria 2917699015 2917699301 628
61 iso_pu_bacteria 8057529695 8057530397 628
62 iso_pu_bacteria 2643221599 2644008128 630
63 iso_pu_bacteria 2643221622 2644126811 630
64 iso_pu_bacteria 2738541293 2738802897 630
65 iso_pu_bacteria 2857524615 2857528204 630
66 iso_pu_bacteria 2919679072 2919681695 630
67 3300021361 Ga0213872_10008083 Ga0213872_100080834 631
68 3300039447 Ga0436361_0581511 Ga0436361_0581511_2458_4452 631
69 iso_pu_bacteria 2513237101 2513691498 631
70 iso_pu_bacteria 2513237141 2513894396 631
71 iso_pu_bacteria 2545555834 2545677317 631
72 iso_pu_bacteria 2738541281 2738743799 631
73 iso_pu_bacteria 2738543032 2739352705 631
74 iso_pu_bacteria 2791355199 2793076799 631
75 iso_pu_bacteria 2861691609 2861693512 631
76 iso_pu_bacteria 2879110137 2879110671 631
77 iso_pu_bacteria 2889033259 2889040989 631
78 iso_pu_bacteria 2922361189 2922367963 631
79 iso_pu_bacteria 2922386360 2922392146 631
80 iso_pu_bacteria 2932794094 2932796222 631
81 iso_pu_bacteria 2932801729 2932804475 631
82 iso_pu_bacteria 2935883170 2935890664 631
83 iso_pu_bacteria 3005710791 3005713849 631
84 iso_pu_bacteria 641522639 641640713 631
85 iso_pu_bacteria 643348564 643599613 631
86 iso_pu_bacteria 8006964411 8006971010 631
87 iso_pu_bacteria 8006994254 8006996204 631
88 iso_pu_bacteria 8056673599 8056680580 631
89 iso_pu_bacteria 8056967851 8056972489 631
90 3300003771 Ga0055526_1000920 Ga0055526_100092013 632
91 3300003775 Ga0055524_1000592 Ga0055524_100059212 632
92 3300005262 Ga0065165_1000631 Ga0065165_100063146 632
93 3300025284 Ga0209130_1000375 Ga0209130_100037530 632
94 3300025291 Ga0209675_1003705 Ga0209675_10037054 632
95 3300025294 Ga0209025_1001241 Ga0209025_100124127 632
96 3300025295 Ga0209564_1000150 Ga0209564_1000150162 632
97 3300025299 Ga0209256_1000108 Ga0209256_1000108162 632
98 3300048922 Ga0496119_0001332 Ga0496119_0001332_28230_30245 633
99 3300003215 JGI25153J46596_10017597 JGI25153J46596_100175972 635
100 3300005329 Ga0070683_100041208 Ga0070683_1000412082 635
101 3300005336 Ga0070680_100019118 Ga0070680_1000191183 635
102 3300005434 Ga0070709_10002327 Ga0070709_100023272 635
103 3300005437 Ga0070710_10023447 Ga0070710_100234473 635
104 3300005535 Ga0070684_100003916 Ga0070684_1000039166 635
105 3300005548 Ga0070665_100001701 Ga0070665_10000170126 635
106 3300005614 Ga0068856_100004294 Ga0068856_10000429415 635
107 3300005937 Ga0081455_10009514 Ga0081455_100095141 635
108 3300005983 Ga0081540_1000668 Ga0081540_100066813 635
109 3300005983 Ga0081540_1000834 Ga0081540_100083419 635
110 3300005983 Ga0081540_1001804 Ga0081540_100180420 635
111 3300005983 Ga0081540_1006721 Ga0081540_10067217 635
112 3300005983 Ga0081540_1010765 Ga0081540_10107654 635
113 3300006175 Ga0070712_100006592 Ga0070712_1000065926 635
114 3300009147 Ga0114129_10036166 Ga0114129_100361664 635
115 3300009177 Ga0105248_10014556 Ga0105248_100145566 635
116 3300009551 Ga0105238_10032004 Ga0105238_100320044 635
117 3300013105 Ga0157369_10034259 Ga0157369_100342592 635
118 3300025254 Ga0209148_1000803 Ga0209148_100080311 635
119 3300025254 Ga0209148_1001372 Ga0209148_10013728 635
120 3300025261 Ga0209233_1002395 Ga0209233_10023953 635
121 3300025906 Ga0207699_10001804 Ga0207699_100018042 635
122 3300025912 Ga0207707_10009479 Ga0207707_100094793 635
123 3300025912 Ga0207707_10118382 Ga0207707_101183821 635
124 3300025915 Ga0207693_10007440 Ga0207693_100074408 635
125 3300025915 Ga0207693_10023059 Ga0207693_100230592 635
126 3300025940 Ga0207691_10042682 Ga0207691_100426824 635
127 3300025961 Ga0207712_10032746 Ga0207712_100327461 635
128 3300026067 Ga0207678_10004710 Ga0207678_1000471013 635
129 3300026078 Ga0207702_10000365 Ga0207702_100003659 635
130 3300026118 Ga0207675_100037862 Ga0207675_1000378626 635
131 3300027296 Ga0209389_1000003 Ga0209389_1000003201 635
132 3300028379 Ga0268266_10002007 Ga0268266_1000200721 635
133 3300028379 Ga0268266_10003537 Ga0268266_100035372 635
134 3300033180 Ga0307510_10037748 Ga0307510_100377484 635
135 3300033544 Ga0316215_1000700 Ga0316215_10007002 635
136 3300035113 Ga0373936_0014766 Ga0373936_0014766_347_2362 635
137 3300035724 Ga0373933_0000276 Ga0373933_0000276_30871_32886 635
138 3300035724 Ga0373933_0066093 Ga0373933_0066093_85_2100 635
139 3300037068 Ga0373925_0004711 Ga0373925_0004711_2330_4345 635
140 3300037068 Ga0373925_0031714 Ga0373925_0031714_508_2523 635
141 3300038443 Ga0395901_0029822 Ga0395901_0029822_3026_5041 635
142 3300039437 Ga0436365_0147566 Ga0436365_0147566_20180_22195 635
143 3300039450 Ga0436363_0198704 Ga0436363_0198704_1724_3739 635
144 3300039450 Ga0436363_1068861 Ga0436363_1068861_1730_3745 635
145 3300044693 Ga0466961_0036074 Ga0466961_0036074_1077_3092 635
146 3300045049 Ga0466959_0005118 Ga0466959_0005118_1301_3316 635
147 3300046454 Ga0495592_0018422 Ga0495592_0018422_1212_3227 635
148 3300046460 Ga0495638_0012994 Ga0495638_0012994_3635_5650 635
149 3300046462 Ga0495651_0019599 Ga0495651_0019599_1761_3776 635
150 3300046473 Ga0495582_0005192 Ga0495582_0005192_1564_3579 635
151 3300046477 Ga0495664_0010192 Ga0495664_0010192_1595_3610 635
152 3300046477 Ga0495664_0026233 Ga0495664_0026233_1075_3090 635
153 3300046492 Ga0495585_0029267 Ga0495585_0029267_1107_3122 635
154 3300046543 Ga0495645_0005296 Ga0495645_0005296_321_2336 635
155 3300046557 Ga0495622_0032526 Ga0495622_0032526_196_2211 635
156 3300046559 Ga0495667_0014371 Ga0495667_0014371_2070_4085 635
157 3300046642 Ga0495634_0031743 Ga0495634_0031743_385_2400 635
158 3300046675 Ga0495657_0004174 Ga0495657_0004174_7097_9112 635
159 3300046683 Ga0495658_0045741 Ga0495658_0045741_126_2141 635
160 3300046809 Ga0495600_0034511 Ga0495600_0034511_1080_3095 635
161 3300047319 Ga0495674_0052968 Ga0495674_0052968_504_2519 635
162 3300047471 Ga0495684_0003266 Ga0495684_0003266_2988_5003 635
163 3300047673 Ga0495593_0032265 Ga0495593_0032265_808_2823 635
164 3300048088 Ga0495602_0040629 Ga0495602_0040629_513_2528 635
165 3300048910 Ga0496107_0027655 Ga0496107_0027655_153_2168 635
166 3300048921 Ga0496118_0027386 Ga0496118_0027386_138_2153 635
167 3300048924 Ga0496121_0000616 Ga0496121_0000616_30946_32961 635
168 3300048924 Ga0496121_0043817 Ga0496121_0043817_1123_3138 635
169 3300048925 Ga0496122_0021160 Ga0496122_0021160_3211_5226 635
170 3300048926 Ga0496123_0001600 Ga0496123_0001600_27958_29973 635
171 3300048928 Ga0496125_0055738 Ga0496125_0055738_594_2609 635
172 3300048929 Ga0496126_0002069 Ga0496126_0002069_23944_26001 635
173 3300049580 Ga0501046_0000045 Ga0501046_0000045_31323_33344 635
174 3300049581 Ga0501047_0019941 Ga0501047_0019941_3428_5443 635
175 3300050492 nmdc:mga0yw44_9918_c1 nmdc:mga0yw44_9918_c1_2540_4555 635
176 3300050494 nmdc:mga06z11_2296_c1 nmdc:mga06z11_2296_c1_3545_5560 635
177 3300050496 nmdc:mga07m45_7765_c1 nmdc:mga07m45_7765_c1_490_2505 635
178 3300053084 Ga0495595_0012070 Ga0495595_0012070_332_2347 635
179 3300053094 Ga0500566_0000017 Ga0500566_0000017_43077_45092 635
180 3300053095 Ga0500640_000030 Ga0500640_000030_11335_13350 635
181 3300053096 Ga0500641_0002832 Ga0500641_0002832_2536_4551 635
182 3300053104 Ga0500556_0000102 Ga0500556_0000102_163_2178 635
183 3300053119 Ga0500595_003002 Ga0500595_003002_5333_7348 635
184 3300053130 Ga0500642_0000077 Ga0500642_0000077_7753_9768 635
185 3300053136 Ga0500559_0000767 Ga0500559_0000767_1839_3854 635
186 3300053159 Ga0500630_000137 Ga0500630_000137_11640_13655 635
187 3300053163 Ga0500639_000015 Ga0500639_000015_77046_79061 635
188 3300003771 Ga0055526_1000275 Ga0055526_100027533 636
189 3300044712 Ga0453684_0000006 Ga0453684_0000006_218716_220797 636
190 3300044712 Ga0453684_0000031 Ga0453684_0000031_23734_25812 636
191 3300048925 Ga0496122_0057064 Ga0496122_0057064_763_2775 636
192 3300049582 Ga0501048_0000994 Ga0501048_0000994_7263_9281 636
193 3300005617 Ga0068859_100068100 Ga0068859_1000681002 637
194 3300006931 Ga0097620_100068101 Ga0097620_1000681012 637
195 3300048925 Ga0496122_0006463 Ga0496122_0006463_11031_13064 637
196 iso_pu_bacteria 8016603502 8016611809 637
197 3300005338 Ga0068868_100023509 Ga0068868_1000235095 638
198 iso_pu_bacteria 2844849076 2844852203 638
199 3300006028 Ga0070717_10004761 Ga0070717_100047616 640
200 3300044735 Ga0466968_0009115 Ga0466968_0009115_1118_3157 640
201 3300005336 Ga0070680_100001002 Ga0070680_1000010024 646
202 3300005530 Ga0070679_100000002 Ga0070679_100000002297 646
203 3300025917 Ga0207660_10004203 Ga0207660_100042034 646
204 3300025921 Ga0207652_10000001 Ga0207652_10000001195 646
205 3300025921 Ga0207652_10000002 Ga0207652_10000002532 646
206 3300027907 Ga0207428_10016761 Ga0207428_100167614 663
207 3300025254 Ga0209148_1001987 Ga0209148_10019875 666
208 iso_pu_bacteria 8054107350 8054111565 668
209 3300046535 Ga0495586_0034221 Ga0495586_0034221_395_2551 670
210 3300042007 Ga0439449_0001381 Ga0439449_0001381_3230_5434 672
211 3300041999 Ga0439433_0000476 Ga0439433_0000476_4696_6870 674
212 3300042007 Ga0439449_0001620 Ga0439449_0001620_745_2967 674
213 3300042014 Ga0439457_001724 Ga0439457_001724_3182_5356 674
214 iso_pu_bacteria 2974302888 2974303310 676
215 iso_pu_bacteria 2945941187 2945943854 681
216 3300025907 Ga0207645_10010349 Ga0207645_100103492 683
217 3300046535 Ga0495586_0006347 Ga0495586_0006347_106_2283 686
218 3300047315 Ga0495581_0005180 Ga0495581_0005180_3330_5507 686
219 3300042002 Ga0439442_001247 Ga0439442_001247_2670_4859 687
220 3300042122 Ga0450920_000245 Ga0450920_000245_3513_5702 687
221 3300042435 Ga0439434_0001676 Ga0439434_0001676_343_2532 687
222 3300042531 Ga0450918_000939 Ga0450918_000939_561_2750 687
223 3300031548 Ga0307408_100038074 Ga0307408_1000380742 693
224 3300031731 Ga0307405_10007168 Ga0307405_100071683 693
225 3300031911 Ga0307412_10004484 Ga0307412_100044845 693
226 3300032002 Ga0307416_100007128 Ga0307416_1000071282 693
227 3300032126 Ga0307415_100022650 Ga0307415_1000226502 693
228 iso_pu_bacteria 2939598168 2939599959 698
229 3300032002 Ga0307416_100042094 Ga0307416_1000420942 699
230 3300025903 Ga0207680_10036470 Ga0207680_100364701 700
231 3300046463 Ga0495653_0022827 Ga0495653_0022827_1704_3911 700
232 3300046531 Ga0495665_0000376 Ga0495665_0000376_10196_12403 700
233 iso_pu_bacteria 2919391150 2919392329 704
234 3300006058 Ga0075432_10003886 Ga0075432_100038862 705
235 iso_pu_bacteria 2690315906 2691513395 708
236 3300000549 LJQas_1000494 LJQas_10004943 709

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00289

Biotin_carb_N

Biotin carboxylase, N-terminal domain

22

131

0.98

PF02785

Biotin_carb_C

Biotin carboxylase C-terminal domain

364

485

0.97

PF00364

Biotin_lipoyl

Biotin-requiring enzyme

649

715

0.96

PF02786

CPSase_L_D2

Carbamoyl-phosphate synthase L chain, ATP binding domain

136

352

0.96

PF13533

Biotin_lipoyl_2

Biotin-lipoyl like

650

690

0.95

PF07478

Dala_Dala_lig_C

D-ala D-ala ligase C-terminus

145

321

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
3g8d-assembly1.cif.gz_A crystal structure of the biotin carboxylase subunit, e296a mutant, of acetyl-coa carboxylase from escherichia coli 0.9734 6 473
3g8d-assembly1.cif.gz_A crystal structure of the biotin carboxylase subunit, e296a mutant, of acetyl-coa carboxylase from escherichia coli 0.9683 6 473
2vqd-assembly1.cif.gz_A crystal structure of biotin carboxylase from pseudomonas aeruginosa complexed with ampcp 0.9651 6 477
3ouu-assembly1.cif.gz_A crystal structure of biotin carboxylase-beta-gamma-atp complex from campylobacter jejuni 0.9639 1 472
2vqd-assembly1.cif.gz_A crystal structure of biotin carboxylase from pseudomonas aeruginosa complexed with ampcp 0.963 6 477
ID Description Score Start End Superfamily
af_P9WPQ3_1_451_3.30.470.20 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.976 6 478 3.30.470.20
af_P9WPQ3_1_451_3.30.470.20 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.9738 6 478 3.30.470.20
af_A0A2R8PV58_38_157_3.40.50.20 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9732 19 136 3.40.50.20
2vqdA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9708 6 89 3.40.50.20
af_Q9V9T5_626_691_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.97 647 687 2.40.50.100
ID Description Score Start End GO Terms
AF-A0A3M6V498-F1-model_v4 Biotin carboxylation domain-containing protein 0.996 8 83 GO:0004658
GO:0005524
GO:0005739
AF-R1C8W8-F1-model_v4 Biotin carboxylation domain-containing protein 0.9927 6 81 GO:0005524
GO:0016874
AF-A0A2J1DUT9-F1-model_v4 Biotin carboxylase (EC 6.4.1.1) 0.9863 6 81 GO:0004485
GO:0004736
GO:0005524
AF-A0A800J9M9-F1-model_v4 3-methylcrotonyl-CoA carboxylase 0.9831 6 116 GO:0005524
GO:0016874
AF-A0A2V8M7X3-F1-model_v4 Acetyl-CoA carboxylase biotin carboxylase subunit (EC 6.4.1.2) 0.983 6 115 GO:0003989
GO:0005524

Feature Viewer

pLDDT pTM Quality
81.79 0.82 High
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Predicted Structure (AlphaFold2)

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