F352676
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 240 | 169 | 480 | 578 |
Family's Representative Sequence
| Representative Sequence | 3300005548|Ga0070665_100019091|Ga0070665_1000190919 |
| Length | 629 |
| Sequence | MPGRIPEQFVDDLLARVDIVDVIQERVPLKKAGRDWSARCPFHDERSPSFTVSPAKQFYHCFGCGAHGSAIGFLMNYDRLEFPDAVEELANRLGLKVPYEGGREAPREDSSDLYNLLEAAAAFYRRQLGENAHASAYFAERGLDEKTLARFNLGYAPDAWDALKNALGTSAPRIALLEKAGMLTSGERGSKYDRFRKRVMFPILDRRGRTIAFGGRIIPSDRPDRENQNAGVHARTSQQDATPKEASDKAEGPKYLNSPETPLFHKGRELFGLWQVREAHTKIPRLIVVEGYMDVISLHQYGVPQAVATLGTATTRDHAEILFRQCADVYFCFDGDRAGRQAAWRAVESVLPRMRDGRQALFLFLPDGEDPDSLVRKEGLAGFEQRLKDATPLSEFFFAEIGKDVNLASLDGKARLAERARPLLAQIPDGAFRDLMLAELDKSTGVRVQVAAAPTDANTRSKPARPQQRSLVRAAITLLVQRPALALALDPPWSFAELRQPGIPLLVELIALCRARTNLMPASLLEHFAEREEAKALHKLAVADFPGGESEARAEFLDAVLQLERQTMQQRIDDFTAKNGEGTITEAERGELRSLLDRKRRVDALLRARPEAGSVRDVAAELRALLAGG |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 2 | 2162886007 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 | Metagenome | Rhizosphere |
| 3 | 3300002773 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS | Metagenome | Endosphere |
| 4 | 3300002774 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA | Metagenome | Endosphere |
| 5 | 3300003187 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB | Metagenome | Endosphere |
| 6 | 3300003215 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF | Metagenome | Endosphere |
| 7 | 3300003781 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 | Metagenome | Endosphere |
| 8 | 3300003791 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 9 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 10 | 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 16 | 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Metagenome | Rhizosphere |
| 17 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 18 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 19 | 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Metagenome | Rhizosphere |
| 20 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 21 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 22 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 23 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 24 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 25 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 26 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 27 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 28 | 3300005983 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 | Metagenome | Rhizosphere |
| 29 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 30 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Metagenome | Rhizosphere |
| 32 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 34 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 35 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 36 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 37 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 38 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 39 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 40 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 41 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 42 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 43 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 44 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 45 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 46 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 47 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 48 | 3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Metagenome | Rhizosphere |
| 49 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 50 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 51 | 3300015262 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG | Metagenome | Rhizosphere |
| 52 | 3300025245 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) | Metagenome | Endosphere |
| 53 | 3300025258 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) | Metagenome | Endosphere |
| 54 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 55 | 3300025294 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 56 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 57 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 58 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 59 | 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 80 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 82 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 83 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 84 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 85 | 3300027312 | Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 86 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 87 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 88 | 3300030500 | Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) | Metagenome | Rhizosphere |
| 89 | 3300031616 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM | Metagenome | Unclassified |
| 90 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 91 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 92 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 93 | 3300032168 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 94 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 95 | 3300036712 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA | Metagenome | Rhizosphere |
| 96 | 3300038705 | Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 | Metagenome | Unclassified |
| 97 | 3300041413 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 | Metagenome | Rhizosphere |
| 98 | 3300041460 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG | Metagenome | Rhizoplane |
| 99 | 3300041512 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG | Metagenome | Unclassified |
| 100 | 3300042004 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 | Metagenome | Rhizosphere |
| 101 | 3300042007 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 | Metagenome | Rhizosphere |
| 102 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 103 | 3300046473 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere | Metagenome | Rhizosphere |
| 104 | 3300046512 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere | Metagenome | Rhizosphere |
| 105 | 3300046536 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 107 | 3300046663 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere | Metagenome | Rhizosphere |
| 108 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 109 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 110 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 111 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 112 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 113 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 114 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 115 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 116 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 117 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 118 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 119 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 120 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 121 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 122 | 3300049568 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 123 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 124 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 125 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 126 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 127 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 128 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 129 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 130 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 131 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 132 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 133 | 3300049583 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 | Metagenome | Rhizosphere |
| 134 | 3300049585 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 | Metagenome | Rhizosphere |
| 135 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 136 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 137 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 138 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 139 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 140 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 141 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 142 | 3300053079 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere | Metagenome | Endosphere |
| 143 | 3300053087 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere | Metagenome | Endosphere |
| 144 | 3300053093 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere | Metagenome | Endosphere |
| 145 | 3300053120 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere | Metagenome | Endosphere |
| 146 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 147 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 148 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 149 | 2547132130 | Stenotrophomonas maltophilia RR-10 | Isolate | Unclassified |
| 150 | 2643221579 | Pseudoxanthomonas sp. Root630 | Isolate | Unclassified |
| 151 | 2643221581 | Pseudoxanthomonas sp. Root65 | Isolate | Unclassified |
| 152 | 2816332141 | Stenotrophomonas muris 1190 (v2) (version 2) | Isolate | Unclassified |
| 153 | 2842391507 | Stenotrophomonas maltophilia SEMIA 4027 | Isolate | Nodule |
| 154 | 2842757796 | Stenotrophomonas sp. R-72406 | Isolate | Unclassified |
| 155 | 2852649853 | Stenotrophomonas sp. JAI102 | Isolate | Rhizosphere |
| 156 | 2874220319 | Stenotrophomonas maltophilia PS5 | Isolate | Unclassified |
| 157 | 2919089067 | Stenotrophomonas sp. 1337 | Isolate | Rhizosphere |
| 158 | 2919134579 | Stenotrophomonas geniculata 1733 | Isolate | Rhizosphere |
| 159 | 2919513703 | Luteimonas sp. 3794 | Isolate | Unclassified |
| 160 | 2919675420 | Luteimonas terrae 4099 | Isolate | Unclassified |
| 161 | 2923516293 | Pseudoxanthomonas mexicana SLBN-89 | Isolate | Rhizosphere |
| 162 | 2928496128 | Stenotrophomonas indicatrix 1163 | Isolate | Unclassified |
| 163 | 2931380184 | Stenotrophomonas sp. DR822 | Isolate | Rhizosphere |
| 164 | 2937610967 | Stenotrophomonas maltophilia EP20 | Isolate | Unclassified |
| 165 | 2939626828 | Stenotrophomonas sp. 2694 | Isolate | Rhizosphere |
| 166 | 2941475908 | Stenotrophomonas rhizophila 2680 | Isolate | Rhizosphere |
| 167 | 2961047084 | Stenotrophomonas maltophilia EP5 | Isolate | Unclassified |
| 168 | 2961064222 | Stenotrophomonas maltophilia EP13 | Isolate | Unclassified |
| 169 | 2987605356 | Stenotrophomonas sp. ATCM1_4 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 90.83 |
| Metatranscriptomes | 0.42 |
| Isolates | 8.75 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 9.17 |
| Nodule | 0.42 |
| Rhizoplane | 2.08 |
| Rhizosphere | 75.42 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0070665_100019091 | 3300005548 | Bacteria | 6877 |
| 2 | SwRhRL2b_contig_80748 | 2162886007 | Bacteria | 6004 |
| 3 | JGI25152J39213_1000039 | 3300002773 | Bacteria | 89573 |
| 4 | JGI25150J39212_1000422 | 3300002774 | Bacteria | 19529 |
| 5 | JGI25151J46595_10000008 | 3300003187 | Bacteria | 334180 |
| 6 | JGI25151J46595_10000154 | 3300003187 | Bacteria | 89582 |
| 7 | JGI25153J46596_10000120 | 3300003215 | Bacteria | 89582 |
| 8 | Ga0055536_1008496 | 3300003781 | Bacteria | 4404 |
| 9 | Ga0055530_10007506 | 3300003791 | Bacteria | 4574 |
| 10 | Ga0065704_10071210 | 3300005289 | Bacteria | 12483 |
| 11 | Ga0070666_10026342 | 3300005335 | Bacteria | 3797 |
| 12 | Ga0070668_100003090 | 3300005347 | Bacteria | 12302 |
| 13 | Ga0070668_100049781 | 3300005347 | Bacteria | 3224 |
| 14 | Ga0070673_100067342 | 3300005364 | Bacteria | 2863 |
| 15 | Ga0070667_100000310 | 3300005367 | Bacteria | 54608 |
| 16 | Ga0070663_100000611 | 3300005455 | Bacteria | 19137 |
| 17 | Ga0070681_10098350 | 3300005458 | Bacteria | 2872 |
| 18 | Ga0068867_100029575 | 3300005459 | Bacteria | 3948 |
| 19 | Ga0068853_100036495 | 3300005539 | Bacteria | 4181 |
| 20 | Ga0068853_100043192 | 3300005539 | Bacteria | 3856 |
| 21 | Ga0070672_100068946 | 3300005543 | Bacteria | 2806 |
| 22 | Ga0070672_100072664 | 3300005543 | Bacteria | 2739 |
| 23 | Ga0070693_100001781 | 3300005547 | Bacteria | 9813 |
| 24 | Ga0070693_100029581 | 3300005547 | Bacteria | 2989 |
| 25 | Ga0070665_100000126 | 3300005548 | Bacteria | 146495 |
| 26 | Ga0070665_100018013 | 3300005548 | Bacteria | 7090 |
| 27 | Ga0070665_100052692 | 3300005548 | Bacteria | 4080 |
| 28 | Ga0068857_100043132 | 3300005577 | Bacteria | 4001 |
| 29 | Ga0068856_100023312 | 3300005614 | Bacteria | 6018 |
| 30 | Ga0068852_100003259 | 3300005616 | Bacteria | 11335 |
| 31 | Ga0068859_100000180 | 3300005617 | Bacteria | 61976 |
| 32 | Ga0068861_100029356 | 3300005719 | Bacteria | 4023 |
| 33 | Ga0068863_100112200 | 3300005841 | Bacteria | 2596 |
| 34 | Ga0068863_100151007 | 3300005841 | Bacteria | 2222 |
| 35 | Ga0068860_100012220 | 3300005843 | Bacteria | 8461 |
| 36 | Ga0068860_100029318 | 3300005843 | Bacteria | 5292 |
| 37 | Ga0068860_100047660 | 3300005843 | Bacteria | 4084 |
| 38 | Ga0068862_100001242 | 3300005844 | Bacteria | 24005 |
| 39 | Ga0068862_100067422 | 3300005844 | Bacteria | 3085 |
| 40 | Ga0081540_1001477 | 3300005983 | Bacteria | 20289 |
| 41 | Ga0081539_10016051 | 3300005985 | Bacteria | 5385 |
| 42 | Ga0097621_100034550 | 3300006237 | Bacteria | 4034 |
| 43 | Ga0068871_100023826 | 3300006358 | Bacteria | 4741 |
| 44 | Ga0097620_100000180 | 3300006931 | Bacteria | 61976 |
| 45 | Ga0105240_10119405 | 3300009093 | Bacteria | 3176 |
| 46 | Ga0105241_10023156 | 3300009174 | Bacteria | 4604 |
| 47 | Ga0105242_10003652 | 3300009176 | Bacteria | 11972 |
| 48 | Ga0105248_10000342 | 3300009177 | Bacteria | 54567 |
| 49 | Ga0105248_10098971 | 3300009177 | Bacteria | 3286 |
| 50 | Ga0105248_10105508 | 3300009177 | Bacteria | 3177 |
| 51 | Ga0105237_10002747 | 3300009545 | Bacteria | 21446 |
| 52 | Ga0105238_10015949 | 3300009551 | Bacteria | 7602 |
| 53 | Ga0105249_10000645 | 3300009553 | Bacteria | 31786 |
| 54 | Ga0105249_10149874 | 3300009553 | Bacteria | 2245 |
| 55 | Ga0105239_10001838 | 3300010375 | Bacteria | 27784 |
| 56 | Ga0105239_10006301 | 3300010375 | Bacteria | 13797 |
| 57 | Ga0105239_10018143 | 3300010375 | Bacteria | 7779 |
| 58 | Ga0157370_10021483 | 3300013104 | Bacteria | 6431 |
| 59 | Ga0157369_10000021 | 3300013105 | Bacteria | 239073 |
| 60 | Ga0157369_10081695 | 3300013105 | Bacteria | 3458 |
| 61 | Ga0157378_10050882 | 3300013297 | Bacteria | 3686 |
| 62 | Ga0163162_10000014 | 3300013306 | Bacteria | 268371 |
| 63 | Ga0157372_10002769 | 3300013307 | Bacteria | 18939 |
| 64 | Ga0157372_10046933 | 3300013307 | Bacteria | 4797 |
| 65 | Ga0157375_10000281 | 3300013308 | Bacteria | 46431 |
| 66 | Ga0163163_10000175 | 3300014325 | Bacteria | 66869 |
| 67 | Ga0163163_10023019 | 3300014325 | Bacteria | 5907 |
| 68 | Ga0182008_10001829 | 3300014497 | Bacteria | 13882 |
| 69 | Ga0157379_10004627 | 3300014968 | Bacteria | 11808 |
| 70 | Ga0157376_10008527 | 3300014969 | Bacteria | 7402 |
| 71 | Ga0182007_10000025 | 3300015262 | Bacteria | 172058 |
| 72 | Ga0207425_1000074 | 3300025245 | Bacteria | 108738 |
| 73 | Ga0209129_1000150 | 3300025258 | Bacteria | 113886 |
| 74 | Ga0209676_1000307 | 3300025292 | Bacteria | 96239 |
| 75 | Ga0209025_1000048 | 3300025294 | Bacteria | 335574 |
| 76 | Ga0209758_1000056 | 3300025297 | Bacteria | 335574 |
| 77 | Ga0209050_1000670 | 3300025298 | Bacteria | 51926 |
| 78 | Ga0209257_1000587 | 3300025304 | Bacteria | 60909 |
| 79 | Ga0207680_10000406 | 3300025903 | Bacteria | 20582 |
| 80 | Ga0207680_10035545 | 3300025903 | Bacteria | 2861 |
| 81 | Ga0207647_10002210 | 3300025904 | Bacteria | 14828 |
| 82 | Ga0207695_10000692 | 3300025913 | Bacteria | 66089 |
| 83 | Ga0207671_10009199 | 3300025914 | Bacteria | 8287 |
| 84 | Ga0207649_10029285 | 3300025920 | Bacteria | 3251 |
| 85 | Ga0207694_10005041 | 3300025924 | Bacteria | 10217 |
| 86 | Ga0207650_10061868 | 3300025925 | Bacteria | 2796 |
| 87 | Ga0207686_10005792 | 3300025934 | Bacteria | 6629 |
| 88 | Ga0207709_10002055 | 3300025935 | Bacteria | 13012 |
| 89 | Ga0207704_10002469 | 3300025938 | Bacteria | 8327 |
| 90 | Ga0207691_10040933 | 3300025940 | Bacteria | 4280 |
| 91 | Ga0207711_10007827 | 3300025941 | Bacteria | 8932 |
| 92 | Ga0207667_10066552 | 3300025949 | Bacteria | 3755 |
| 93 | Ga0207712_10000198 | 3300025961 | Bacteria | 60986 |
| 94 | Ga0207668_10011979 | 3300025972 | Bacteria | 5292 |
| 95 | Ga0207640_10023127 | 3300025981 | Bacteria | 3731 |
| 96 | Ga0207658_10000298 | 3300025986 | Bacteria | 51778 |
| 97 | Ga0207658_10020023 | 3300025986 | Bacteria | 4631 |
| 98 | Ga0207658_10080351 | 3300025986 | Bacteria | 2497 |
| 99 | Ga0207639_10000606 | 3300026041 | Bacteria | 24698 |
| 100 | Ga0207639_10036670 | 3300026041 | Bacteria | 3635 |
| 101 | Ga0207639_10054434 | 3300026041 | Bacteria | 3058 |
| 102 | Ga0207639_10121787 | 3300026041 | Bacteria | 2144 |
| 103 | Ga0207678_10028070 | 3300026067 | Bacteria | 4914 |
| 104 | Ga0207678_10083824 | 3300026067 | Bacteria | 2726 |
| 105 | Ga0207702_10011627 | 3300026078 | Bacteria | 7334 |
| 106 | Ga0207702_10040360 | 3300026078 | Bacteria | 3913 |
| 107 | Ga0207648_10005413 | 3300026089 | Bacteria | 12862 |
| 108 | Ga0207676_10011830 | 3300026095 | Bacteria | 6243 |
| 109 | Ga0207674_10003335 | 3300026116 | Bacteria | 19740 |
| 110 | Ga0207675_100059736 | 3300026118 | Bacteria | 3558 |
| 111 | Ga0207683_10089140 | 3300026121 | Bacteria | 2745 |
| 112 | Ga0207698_10002294 | 3300026142 | Bacteria | 11332 |
| 113 | Ga0209371_1000028 | 3300027312 | Bacteria | 429688 |
| 114 | Ga0268266_10000001 | 3300028379 | Bacteria | 4040580 |
| 115 | Ga0268266_10072577 | 3300028379 | Bacteria | 2985 |
| 116 | Ga0268265_10001651 | 3300028380 | Bacteria | 18273 |
| 117 | Ga0268265_10047960 | 3300028380 | Bacteria | 3204 |
| 118 | Ga0268256_1000030 | 3300030500 | Bacteria | 429688 |
| 119 | Ga0307508_10012088 | 3300031616 | Bacteria | 7897 |
| 120 | Ga0307516_10079541 | 3300031730 | Bacteria | 3123 |
| 121 | Ga0307413_10101830 | 3300031824 | Bacteria | 1900 |
| 122 | Ga0307414_10010457 | 3300032004 | Bacteria | 5385 |
| 123 | Ga0316593_10009570 | 3300032168 | Bacteria | 2743 |
| 124 | Ga0316574_0006186 | 3300035398 | Bacteria | 6447 |
| 125 | Ga0316584_0023076 | 3300036712 | Bacteria | 4544 |
| 126 | Ga0237819_00061 | 3300038705 | Bacteria | 38106 |
| 127 | Ga0439465_0000127 | 3300041413 | Bacteria | 18321 |
| 128 | Ga0451802_0212968 | 3300041460 | Bacteria | 4737 |
| 129 | Ga0451853_1315115 | 3300041512 | Bacteria | 2388 |
| 130 | Ga0439445_0002162 | 3300042004 | Bacteria | 4354 |
| 131 | Ga0439449_0000081 | 3300042007 | Bacteria | 30556 |
| 132 | Ga0439449_0020757 | 3300042007 | Bacteria | 2461 |
| 133 | Ga0466970_0000079 | 3300044765 | Bacteria | 39743 |
| 134 | Ga0495582_0006713 | 3300046473 | Bacteria | 6396 |
| 135 | Ga0495610_0051388 | 3300046512 | Bacteria | 2006 |
| 136 | Ga0495587_0028508 | 3300046536 | Bacteria | 3395 |
| 137 | Ga0495668_0003552 | 3300046616 | Bacteria | 11588 |
| 138 | Ga0495635_0031337 | 3300046663 | Bacteria | 3692 |
| 139 | Ga0495658_0001597 | 3300046683 | Bacteria | 11805 |
| 140 | Ga0495686_0036125 | 3300047472 | Bacteria | 3171 |
| 141 | Ga0495686_0061032 | 3300047472 | Bacteria | 2343 |
| 142 | Ga0496104_0000045 | 3300048907 | Bacteria | 152445 |
| 143 | Ga0496105_0000075 | 3300048908 | Bacteria | 75152 |
| 144 | Ga0496114_0017823 | 3300048917 | Bacteria | 5739 |
| 145 | Ga0496115_0000164 | 3300048918 | Bacteria | 62174 |
| 146 | Ga0496116_0012013 | 3300048919 | Bacteria | 7108 |
| 147 | Ga0496117_0013578 | 3300048920 | Bacteria | 7095 |
| 148 | Ga0496118_0000182 | 3300048921 | Bacteria | 110967 |
| 149 | Ga0496118_0000223 | 3300048921 | Bacteria | 99360 |
| 150 | Ga0496118_0014100 | 3300048921 | Bacteria | 7499 |
| 151 | Ga0496118_0022525 | 3300048921 | Bacteria | 5502 |
| 152 | Ga0496119_0000303 | 3300048922 | Bacteria | 68844 |
| 153 | Ga0496120_0000710 | 3300048923 | Bacteria | 48861 |
| 154 | Ga0496122_0000178 | 3300048925 | Bacteria | 150162 |
| 155 | Ga0496122_0000915 | 3300048925 | Bacteria | 54089 |
| 156 | Ga0496123_0000635 | 3300048926 | Bacteria | 58668 |
| 157 | Ga0496123_0016403 | 3300048926 | Bacteria | 6018 |
| 158 | Ga0496126_0000683 | 3300048929 | Bacteria | 62337 |
| 159 | Ga0496126_0008037 | 3300048929 | Bacteria | 11443 |
| 160 | Ga0501031_0004370 | 3300049568 | Bacteria | 9153 |
| 161 | Ga0501032_0007767 | 3300049569 | Bacteria | 7821 |
| 162 | Ga0501032_0028474 | 3300049569 | Bacteria | 3839 |
| 163 | Ga0501033_0000369 | 3300049570 | Bacteria | 43184 |
| 164 | Ga0501033_0026424 | 3300049570 | Bacteria | 4369 |
| 165 | Ga0501033_0046734 | 3300049570 | Bacteria | 3218 |
| 166 | Ga0501034_0000309 | 3300049571 | Bacteria | 86590 |
| 167 | Ga0501034_0002578 | 3300049571 | Bacteria | 21567 |
| 168 | Ga0501034_0004045 | 3300049571 | Bacteria | 16451 |
| 169 | Ga0501034_0008321 | 3300049571 | Bacteria | 10977 |
| 170 | Ga0501034_0014617 | 3300049571 | Bacteria | 8083 |
| 171 | Ga0501036_0012821 | 3300049572 | Bacteria | 6956 |
| 172 | Ga0501036_0034473 | 3300049572 | Bacteria | 4282 |
| 173 | Ga0501037_0000614 | 3300049573 | Bacteria | 27666 |
| 174 | Ga0501037_0001742 | 3300049573 | Bacteria | 15796 |
| 175 | Ga0501037_0002504 | 3300049573 | Bacteria | 13264 |
| 176 | Ga0501037_0042816 | 3300049573 | Bacteria | 3328 |
| 177 | Ga0501038_0002167 | 3300049574 | Bacteria | 18252 |
| 178 | Ga0501038_0019217 | 3300049574 | Bacteria | 6161 |
| 179 | Ga0501038_0084627 | 3300049574 | Bacteria | 2668 |
| 180 | Ga0501043_0007969 | 3300049579 | Bacteria | 8366 |
| 181 | Ga0501043_0010954 | 3300049579 | Bacteria | 7104 |
| 182 | Ga0501043_0082551 | 3300049579 | Bacteria | 2526 |
| 183 | Ga0501046_0002126 | 3300049580 | Bacteria | 18729 |
| 184 | Ga0501046_0011510 | 3300049580 | Bacteria | 7563 |
| 185 | Ga0501047_0000408 | 3300049581 | Bacteria | 48197 |
| 186 | Ga0501047_0010254 | 3300049581 | Bacteria | 8864 |
| 187 | Ga0501047_0269324 | 3300049581 | Bacteria | 1550 |
| 188 | Ga0501048_0012450 | 3300049582 | Bacteria | 6328 |
| 189 | Ga0501048_0029233 | 3300049582 | Bacteria | 3998 |
| 190 | Ga0501067_0000218 | 3300049583 | Bacteria | 32000 |
| 191 | Ga0501069_0006851 | 3300049585 | Bacteria | 5960 |
| 192 | Ga0501070_0002963 | 3300049586 | Bacteria | 14790 |
| 193 | Ga0501070_0085071 | 3300049586 | Bacteria | 2618 |
| 194 | Ga0501070_0175872 | 3300049586 | Bacteria | 1762 |
| 195 | Ga0501073_0011794 | 3300049589 | Bacteria | 6379 |
| 196 | Ga0501074_0003017 | 3300049590 | Bacteria | 11855 |
| 197 | Ga0501074_0021071 | 3300049590 | Bacteria | 4734 |
| 198 | Ga0501080_0001498 | 3300049742 | Bacteria | 19702 |
| 199 | Ga0501080_0004479 | 3300049742 | Bacteria | 12437 |
| 200 | Ga0501080_0032477 | 3300049742 | Bacteria | 4869 |
| 201 | Ga0501080_0053822 | 3300049742 | Bacteria | 3748 |
| 202 | Ga0501080_0113728 | 3300049742 | Bacteria | 2509 |
| 203 | Ga0501080_0155443 | 3300049742 | Bacteria | 2113 |
| 204 | Ga0501083_0000615 | 3300049744 | Bacteria | 22942 |
| 205 | Ga0501035_0031986 | 3300049822 | Bacteria | 4791 |
| 206 | Ga0501035_0121155 | 3300049822 | Bacteria | 2286 |
| 207 | Ga0501044_0000852 | 3300049823 | Bacteria | 36664 |
| 208 | Ga0501044_0027547 | 3300049823 | Bacteria | 6004 |
| 209 | Ga0501044_0028290 | 3300049823 | Bacteria | 5916 |
| 210 | Ga0500610_0000295 | 3300053079 | Bacteria | 15072 |
| 211 | Ga0500643_008082 | 3300053087 | Bacteria | 4168 |
| 212 | Ga0500651_0000508 | 3300053093 | Bacteria | 20161 |
| 213 | Ga0500651_0006679 | 3300053093 | Bacteria | 6671 |
| 214 | Ga0500651_0059010 | 3300053093 | Bacteria | 2399 |
| 215 | Ga0500597_000054 | 3300053120 | Bacteria | 22971 |
| 216 | Ga0500559_0015362 | 3300053136 | Bacteria | 3233 |
| 217 | Ga0500568_0000581 | 3300053139 | Bacteria | 26570 |
| 218 | Ga0501082_0001378 | 3300060353 | Bacteria | 21377 |
| 219 | Ga0501082_0024366 | 3300060353 | Bacteria | 5217 |
| 220 | 2547499565 | 2547132130 | Bacteria | 4660562 |
| 221 | 2643907645 | 2643221579 | Bacteria | 4443405 |
| 222 | 2643914096 | 2643221581 | Bacteria | 3893603 |
| 223 | 2816519957 | 2816332141 | Bacteria | 4436036 |
| 224 | 2842395449 | 2842391507 | Bacteria | 4486072 |
| 225 | 2842761114 | 2842757796 | Bacteria | 3981385 |
| 226 | 2852653358 | 2852649853 | Bacteria | 4036942 |
| 227 | 2874224211 | 2874220319 | Bacteria | 4594709 |
| 228 | 2919092112 | 2919089067 | Bacteria | 4560942 |
| 229 | 2919135364 | 2919134579 | Bacteria | 4480386 |
| 230 | 2919514205 | 2919513703 | Bacteria | 3844312 |
| 231 | 2919676021 | 2919675420 | Bacteria | 3969095 |
| 232 | 2923516555 | 2923516293 | Bacteria | 3716336 |
| 233 | 2928498745 | 2928496128 | Bacteria | 4631123 |
| 234 | 2931382385 | 2931380184 | Bacteria | 4455911 |
| 235 | 2937612996 | 2937610967 | Bacteria | 4618818 |
| 236 | 2939629512 | 2939626828 | Bacteria | 4695272 |
| 237 | 2941477648 | 2941475908 | Bacteria | 4145589 |
| 238 | 2961050975 | 2961047084 | Bacteria | 4594415 |
| 239 | 2961065697 | 2961064222 | Bacteria | 4749990 |
| 240 | 2987609135 | 2987605356 | Bacteria | 4187822 |
| 241 | Ga0070665_100019091 | |||
| 242 | SwRhRL2b_contig_80748 | |||
| 243 | JGI25152J39213_1000039 | |||
| 244 | JGI25150J39212_1000422 | |||
| 245 | JGI25151J46595_10000008 | |||
| 246 | JGI25151J46595_10000154 | |||
| 247 | JGI25153J46596_10000120 | |||
| 248 | Ga0055536_1008496 | |||
| 249 | Ga0055530_10007506 | |||
| 250 | Ga0065704_10071210 | |||
| 251 | Ga0070666_10026342 | |||
| 252 | Ga0070668_100003090 | |||
| 253 | Ga0070668_100049781 | |||
| 254 | Ga0070673_100067342 | |||
| 255 | Ga0070667_100000310 | |||
| 256 | Ga0070663_100000611 | |||
| 257 | Ga0070681_10098350 | |||
| 258 | Ga0068867_100029575 | |||
| 259 | Ga0068853_100036495 | |||
| 260 | Ga0068853_100043192 | |||
| 261 | Ga0070672_100068946 | |||
| 262 | Ga0070672_100072664 | |||
| 263 | Ga0070693_100001781 | |||
| 264 | Ga0070693_100029581 | |||
| 265 | Ga0070665_100000126 | |||
| 266 | Ga0070665_100018013 | |||
| 267 | Ga0070665_100052692 | |||
| 268 | Ga0068857_100043132 | |||
| 269 | Ga0068856_100023312 | |||
| 270 | Ga0068852_100003259 | |||
| 271 | Ga0068859_100000180 | |||
| 272 | Ga0068861_100029356 | |||
| 273 | Ga0068863_100112200 | |||
| 274 | Ga0068863_100151007 | |||
| 275 | Ga0068860_100012220 | |||
| 276 | Ga0068860_100029318 | |||
| 277 | Ga0068860_100047660 | |||
| 278 | Ga0068862_100001242 | |||
| 279 | Ga0068862_100067422 | |||
| 280 | Ga0081540_1001477 | |||
| 281 | Ga0081539_10016051 | |||
| 282 | Ga0097621_100034550 | |||
| 283 | Ga0068871_100023826 | |||
| 284 | Ga0097620_100000180 | |||
| 285 | Ga0105240_10119405 | |||
| 286 | Ga0105241_10023156 | |||
| 287 | Ga0105242_10003652 | |||
| 288 | Ga0105248_10000342 | |||
| 289 | Ga0105248_10098971 | |||
| 290 | Ga0105248_10105508 | |||
| 291 | Ga0105237_10002747 | |||
| 292 | Ga0105238_10015949 | |||
| 293 | Ga0105249_10000645 | |||
| 294 | Ga0105249_10149874 | |||
| 295 | Ga0105239_10001838 | |||
| 296 | Ga0105239_10006301 | |||
| 297 | Ga0105239_10018143 | |||
| 298 | Ga0157370_10021483 | |||
| 299 | Ga0157369_10000021 | |||
| 300 | Ga0157369_10081695 | |||
| 301 | Ga0157378_10050882 | |||
| 302 | Ga0163162_10000014 | |||
| 303 | Ga0157372_10002769 | |||
| 304 | Ga0157372_10046933 | |||
| 305 | Ga0157375_10000281 | |||
| 306 | Ga0163163_10000175 | |||
| 307 | Ga0163163_10023019 | |||
| 308 | Ga0182008_10001829 | |||
| 309 | Ga0157379_10004627 | |||
| 310 | Ga0157376_10008527 | |||
| 311 | Ga0182007_10000025 | |||
| 312 | Ga0207425_1000074 | |||
| 313 | Ga0209129_1000150 | |||
| 314 | Ga0209676_1000307 | |||
| 315 | Ga0209025_1000048 | |||
| 316 | Ga0209758_1000056 | |||
| 317 | Ga0209050_1000670 | |||
| 318 | Ga0209257_1000587 | |||
| 319 | Ga0207680_10000406 | |||
| 320 | Ga0207680_10035545 | |||
| 321 | Ga0207647_10002210 | |||
| 322 | Ga0207695_10000692 | |||
| 323 | Ga0207671_10009199 | |||
| 324 | Ga0207649_10029285 | |||
| 325 | Ga0207694_10005041 | |||
| 326 | Ga0207650_10061868 | |||
| 327 | Ga0207686_10005792 | |||
| 328 | Ga0207709_10002055 | |||
| 329 | Ga0207704_10002469 | |||
| 330 | Ga0207691_10040933 | |||
| 331 | Ga0207711_10007827 | |||
| 332 | Ga0207667_10066552 | |||
| 333 | Ga0207712_10000198 | |||
| 334 | Ga0207668_10011979 | |||
| 335 | Ga0207640_10023127 | |||
| 336 | Ga0207658_10000298 | |||
| 337 | Ga0207658_10020023 | |||
| 338 | Ga0207658_10080351 | |||
| 339 | Ga0207639_10000606 | |||
| 340 | Ga0207639_10036670 | |||
| 341 | Ga0207639_10054434 | |||
| 342 | Ga0207639_10121787 | |||
| 343 | Ga0207678_10028070 | |||
| 344 | Ga0207678_10083824 | |||
| 345 | Ga0207702_10011627 | |||
| 346 | Ga0207702_10040360 | |||
| 347 | Ga0207648_10005413 | |||
| 348 | Ga0207676_10011830 | |||
| 349 | Ga0207674_10003335 | |||
| 350 | Ga0207675_100059736 | |||
| 351 | Ga0207683_10089140 | |||
| 352 | Ga0207698_10002294 | |||
| 353 | Ga0209371_1000028 | |||
| 354 | Ga0268266_10000001 | |||
| 355 | Ga0268266_10072577 | |||
| 356 | Ga0268265_10001651 | |||
| 357 | Ga0268265_10047960 | |||
| 358 | Ga0268256_1000030 | |||
| 359 | Ga0307508_10012088 | |||
| 360 | Ga0307516_10079541 | |||
| 361 | Ga0307413_10101830 | |||
| 362 | Ga0307414_10010457 | |||
| 363 | Ga0316593_10009570 | |||
| 364 | Ga0316574_0006186 | |||
| 365 | Ga0316584_0023076 | |||
| 366 | Ga0237819_00061 | |||
| 367 | Ga0439465_0000127 | |||
| 368 | Ga0451802_0212968 | |||
| 369 | Ga0451853_1315115 | |||
| 370 | Ga0439445_0002162 | |||
| 371 | Ga0439449_0000081 | |||
| 372 | Ga0439449_0020757 | |||
| 373 | Ga0466970_0000079 | |||
| 374 | Ga0495582_0006713 | |||
| 375 | Ga0495610_0051388 | |||
| 376 | Ga0495587_0028508 | |||
| 377 | Ga0495668_0003552 | |||
| 378 | Ga0495635_0031337 | |||
| 379 | Ga0495658_0001597 | |||
| 380 | Ga0495686_0036125 | |||
| 381 | Ga0495686_0061032 | |||
| 382 | Ga0496104_0000045 | |||
| 383 | Ga0496105_0000075 | |||
| 384 | Ga0496114_0017823 | |||
| 385 | Ga0496115_0000164 | |||
| 386 | Ga0496116_0012013 | |||
| 387 | Ga0496117_0013578 | |||
| 388 | Ga0496118_0000182 | |||
| 389 | Ga0496118_0000223 | |||
| 390 | Ga0496118_0014100 | |||
| 391 | Ga0496118_0022525 | |||
| 392 | Ga0496119_0000303 | |||
| 393 | Ga0496120_0000710 | |||
| 394 | Ga0496122_0000178 | |||
| 395 | Ga0496122_0000915 | |||
| 396 | Ga0496123_0000635 | |||
| 397 | Ga0496123_0016403 | |||
| 398 | Ga0496126_0000683 | |||
| 399 | Ga0496126_0008037 | |||
| 400 | Ga0501031_0004370 | |||
| 401 | Ga0501032_0007767 | |||
| 402 | Ga0501032_0028474 | |||
| 403 | Ga0501033_0000369 | |||
| 404 | Ga0501033_0026424 | |||
| 405 | Ga0501033_0046734 | |||
| 406 | Ga0501034_0000309 | |||
| 407 | Ga0501034_0002578 | |||
| 408 | Ga0501034_0004045 | |||
| 409 | Ga0501034_0008321 | |||
| 410 | Ga0501034_0014617 | |||
| 411 | Ga0501036_0012821 | |||
| 412 | Ga0501036_0034473 | |||
| 413 | Ga0501037_0000614 | |||
| 414 | Ga0501037_0001742 | |||
| 415 | Ga0501037_0002504 | |||
| 416 | Ga0501037_0042816 | |||
| 417 | Ga0501038_0002167 | |||
| 418 | Ga0501038_0019217 | |||
| 419 | Ga0501038_0084627 | |||
| 420 | Ga0501043_0007969 | |||
| 421 | Ga0501043_0010954 | |||
| 422 | Ga0501043_0082551 | |||
| 423 | Ga0501046_0002126 | |||
| 424 | Ga0501046_0011510 | |||
| 425 | Ga0501047_0000408 | |||
| 426 | Ga0501047_0010254 | |||
| 427 | Ga0501047_0269324 | |||
| 428 | Ga0501048_0012450 | |||
| 429 | Ga0501048_0029233 | |||
| 430 | Ga0501067_0000218 | |||
| 431 | Ga0501069_0006851 | |||
| 432 | Ga0501070_0002963 | |||
| 433 | Ga0501070_0085071 | |||
| 434 | Ga0501070_0175872 | |||
| 435 | Ga0501073_0011794 | |||
| 436 | Ga0501074_0003017 | |||
| 437 | Ga0501074_0021071 | |||
| 438 | Ga0501080_0001498 | |||
| 439 | Ga0501080_0004479 | |||
| 440 | Ga0501080_0032477 | |||
| 441 | Ga0501080_0053822 | |||
| 442 | Ga0501080_0113728 | |||
| 443 | Ga0501080_0155443 | |||
| 444 | Ga0501083_0000615 | |||
| 445 | Ga0501035_0031986 | |||
| 446 | Ga0501035_0121155 | |||
| 447 | Ga0501044_0000852 | |||
| 448 | Ga0501044_0027547 | |||
| 449 | Ga0501044_0028290 | |||
| 450 | Ga0500610_0000295 | |||
| 451 | Ga0500643_008082 | |||
| 452 | Ga0500651_0000508 | |||
| 453 | Ga0500651_0006679 | |||
| 454 | Ga0500651_0059010 | |||
| 455 | Ga0500597_000054 | |||
| 456 | Ga0500559_0015362 | |||
| 457 | Ga0500568_0000581 | |||
| 458 | Ga0501082_0001378 | |||
| 459 | Ga0501082_0024366 | |||
| 460 | 2547499565 | |||
| 461 | 2643907645 | |||
| 462 | 2643914096 | |||
| 463 | 2816519957 | |||
| 464 | 2842395449 | |||
| 465 | 2842761114 | |||
| 466 | 2852653358 | |||
| 467 | 2874224211 | |||
| 468 | 2919092112 | |||
| 469 | 2919135364 | |||
| 470 | 2919514205 | |||
| 471 | 2919676021 | |||
| 472 | 2923516555 | |||
| 473 | 2928498745 | |||
| 474 | 2931382385 | |||
| 475 | 2937612996 | |||
| 476 | 2939629512 | |||
| 477 | 2941477648 | |||
| 478 | 2961050975 | |||
| 479 | 2961065697 | |||
| 480 | 2987609135 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1d0q-assembly1.cif.gz_B | structure of the zinc-binding domain of bacillus stearothermophilus dna primase | 0.9639 | 3 | 96 |
| 5vaz-assembly2.cif.gz_B | crystal structure of a dna primase domain from pseudomonas aeruginosa | 0.9564 | 112 | 417 |
| 1eqn-assembly4.cif.gz_D | e.coli primase catalytic core | 0.9476 | 112 | 416 |
| 1dde-assembly1.cif.gz_A | structure of the dnag catalytic core | 0.9472 | 112 | 418 |
| 3b39-assembly1.cif.gz_A | structure of the dnag primase catalytic domain bound to ssdna | 0.9426 | 106 | 416 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 5vazA02 | Alpha Beta;3-Layer(aba) Sandwich;Dna Topoisomerase Vi A Subunit; Chain: A, domain 2; | 0.9672 | 237 | 362 | 3.40.1360.10 |
| 5vazB03 | Mainly Alpha;Up-down Bundle;Pheromone ER-1;DnaG, RNA polymerase domain, helical bundle | 0.9513 | 364 | 417 | 1.20.50.20 |
| 5vazA02 | Alpha Beta;3-Layer(aba) Sandwich;Dna Topoisomerase Vi A Subunit; Chain: A, domain 2; | 0.9452 | 237 | 362 | 3.40.1360.10 |
| 5vazA03 | Mainly Alpha;Up-down Bundle;Pheromone ER-1;DnaG, RNA polymerase domain, helical bundle | 0.9357 | 364 | 418 | 1.20.50.20 |
| af_P9WNW1_1_101_3.90.580.10 | Alpha Beta;Alpha-Beta Complex;DNA Primase; Chain A;Zinc finger, CHC2-type domain | 0.9331 | 1 | 95 | 3.90.580.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A536T8N6-F1-model_v4 | DNA primase | 0.9946 | 5 | 99 |
GO:0003677
GO:0003896 GO:0005737 GO:0008270 |
| AF-A0A533ZZD2-F1-model_v4 | Zinc finger CHC2-type domain-containing protein | 0.9811 | 1 | 92 |
GO:0003677
GO:0003896 GO:0005737 GO:0008270 |
| AF-A0A831Y4Q6-F1-model_v4 | Zinc finger CHC2-type domain-containing protein | 0.9733 | 1 | 89 |
GO:0003677
GO:0003896 GO:0005737 GO:0008270 |
| AF-A0A3C1UF68-F1-model_v4 | DNA primase | 0.9711 | 5 | 79 |
GO:0003677
GO:0003896 GO:0005737 GO:0008270 |
| AF-W1XE62-F1-model_v4 | DNA primase | 0.9652 | 1 | 76 |
GO:0003677
GO:0003896 GO:0005737 GO:0008270 |