F353407

General Info

Members Datasets Scaffolds Average Seq Length
241 144 242 367

Family's Representative Sequence

Representative Sequence 3300003316|rootH1_10060286|rootH1_100602862
Length 395
Sequence MEWRFTVRSETPVKPSEGEGSMNISVMQENLARGLGVVSRAVSSRATLPVLANVLLKTEDAGLKLTATNLEIGINCWVPGKVEAEGEITVPAKLLTDLVMSLPNQRIDLQLSAKDRTLKVSCGNSRSSIKGIDADEFPVVAAIGDAPATSVGARELRDALGEVVFAAASDESRPILTGVLTKLDGQAMTLAAADNYRIAVRTVATTKPVAPELSIVVPARSYAELMRILPDSDDPIDITVTPNKSQVLFHVEGIDLVSRLIEGQFPNYEPVIPTSHTSRAVIDRESFLAGARRASIFARDSANIVKVELAGDDGNGLSITAHAADVGENADTLEATLDGQATTIAFNARYLIDVLANLRADEAALELSGPLAPGVIRGVGKDDYVHVIMPVRTAS

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
17 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
23 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
24 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
29 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
30 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300027424 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes) (version 2) Metagenome Rhizosphere
42 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
43 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
44 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
45 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
46 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
47 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
48 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
49 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
50 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
51 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
52 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
53 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
54 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
55 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
56 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
57 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
58 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
59 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
60 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
61 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
62 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
63 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
64 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
65 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
66 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
67 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
68 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
69 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
70 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
71 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
72 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
73 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
74 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
75 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
76 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
77 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
78 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
79 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
80 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
81 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
82 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
83 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
84 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
85 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
86 3300042124 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_082716_2423 Metagenome Rhizosphere
87 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
88 3300042147 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_080116_2618 Metagenome Rhizosphere
89 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
90 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
91 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
92 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
93 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
94 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
95 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
96 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
97 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
98 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
99 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
100 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
101 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
102 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
103 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
104 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
116 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
117 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
118 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
119 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
120 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
121 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
122 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
123 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
124 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
125 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
126 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
127 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
128 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
129 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
131 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
132 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
133 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
134 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
135 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
136 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
137 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
138 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
139 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
140 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
141 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
142 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
143 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
144 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.66
Nodule 0
Rhizoplane 0.83
Rhizosphere 95.44
Stem 0
Stem Tuber 0
Unclassified 2.07

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10010855 3300003316 Bacteria 76739
2 rootH1_10010855 3300003323 Bacteria 16450
3 rootH1_10060286 3300003316 Bacteria 2482
4 rootH2_10004711 3300003320 Bacteria 129035
5 Ga0065707_10105891 3300005295 Bacteria 2624
6 Ga0070683_100055923 3300005329 Unclassified 3663
7 Ga0070683_100160617 3300005329 Bacteria 2132
8 Ga0070680_100020073 3300005336 Bacteria 5299
9 Ga0070660_100001123 3300005339 Bacteria 18053
10 Ga0070660_100003502 3300005339 Bacteria 10816
11 Ga0070714_100084310 3300005435 Bacteria 2773
12 Ga0070705_100007370 3300005440 Bacteria 5414
13 Ga0070708_100075836 3300005445 Bacteria 3035
14 Ga0070708_100095368 3300005445 Bacteria 2716
15 Ga0070681_10063294 3300005458 Bacteria 3671
16 Ga0070706_100065045 3300005467 Bacteria 3372
17 Ga0070707_100013748 3300005468 Bacteria 7581
18 Ga0070707_100071700 3300005468 Bacteria 3337
19 Ga0070707_100085685 3300005468 Bacteria 3046
20 Ga0070707_100112631 3300005468 Bacteria 2639
21 Ga0070698_100007524 3300005471 Bacteria 11782
22 Ga0070679_100006651 3300005530 Bacteria 10779
23 Ga0070679_100122068 3300005530 Bacteria 2590
24 Ga0070679_100261607 3300005530 Bacteria 1685
25 Ga0070684_100214435 3300005535 Bacteria 1755
26 Ga0070686_100001633 3300005544 Bacteria 12537
27 Ga0070696_100002700 3300005546 Bacteria 11768
28 Ga0070696_100013411 3300005546 Bacteria 5498
29 Ga0070696_100027619 3300005546 Bacteria 3868
30 Ga0068855_100000017 3300005563 Bacteria 212278
31 Ga0068855_100155687 3300005563 Bacteria 2596
32 Ga0068855_100276993 3300005563 Bacteria 1864
33 Ga0068857_100000251 3300005577 Bacteria 36024
34 Ga0068864_100160904 3300005618 Bacteria 2041
35 Ga0081539_10012250 3300005985 Bacteria 6647
36 Ga0075370_10007719 3300006353 Bacteria 5494
37 Ga0075434_100338842 3300006871 Unclassified 1524
38 Ga0105245_10000001 3300009098 Bacteria 939270
39 Ga0114129_10035669 3300009147 Bacteria 7026
40 Ga0157370_10048283 3300013104 Bacteria 4078
41 Ga0157369_10000168 3300013105 Bacteria 92689
42 Ga0163163_10074891 3300014325 Bacteria 3378
43 Ga0163163_10142328 3300014325 Bacteria 2441
44 Ga0163163_10292180 3300014325 Bacteria 1682
45 Ga0157380_10348117 3300014326 Bacteria 1385
46 Ga0207684_10188936 3300025910 Bacteria 1776
47 Ga0207660_10241196 3300025917 Unclassified 1424
48 Ga0207652_10004928 3300025921 Bacteria 10802
49 Ga0207646_10023531 3300025922 Bacteria 5657
50 Ga0207646_10030795 3300025922 Bacteria 4861
51 Ga0207646_10073885 3300025922 Bacteria 3046
52 Ga0207687_10000001 3300025927 Bacteria 1130810
53 Ga0207687_10000004 3300025927 Bacteria 841177
54 Ga0207664_10064447 3300025929 Bacteria 2931
55 Ga0207691_10135869 3300025940 Bacteria 2168
56 Ga0207661_10069641 3300025944 Unclassified 2869
57 Ga0207667_10083601 3300025949 Bacteria 3305
58 Ga0207648_10167140 3300026089 Bacteria 1944
59 Ga0207676_10328098 3300026095 Bacteria 1407
60 Ga0209984_1006154 3300027424 Bacteria 1464
61 Ga0209971_1001036 3300027682 Bacteria 7084
62 Ga0209998_10000293 3300027717 Bacteria 15346
63 Ga0209998_10003947 3300027717 Bacteria 3194
64 Ga0209974_10001385 3300027876 Bacteria 8757
65 Ga0209974_10002462 3300027876 Bacteria 6701
66 Ga0207428_10016623 3300027907 Bacteria 6326
67 Ga0265337_1020260 3300028556 Unclassified 2084
68 Ga0265326_10009070 3300028558 Bacteria 2979
69 Ga0265326_10010447 3300028558 Unclassified 2752
70 Ga0265326_10023503 3300028558 Bacteria 1761
71 Ga0265319_1000500 3300028563 Bacteria 27148
72 Ga0265334_10002189 3300028573 Bacteria 9195
73 Ga0265334_10007414 3300028573 Bacteria 4704
74 Ga0265334_10012156 3300028573 Bacteria 3616
75 Ga0265318_10018066 3300028577 Bacteria 2884
76 Ga0265318_10027550 3300028577 Unclassified 2232
77 Ga0265322_10003623 3300028654 Bacteria 4645
78 Ga0265336_10015562 3300028666 Archaea 2498
79 Ga0265338_10000074 3300028800 Bacteria 181183
80 Ga0265338_10000894 3300028800 Bacteria 50064
81 Ga0265338_10000979 3300028800 Bacteria 48106
82 Ga0265338_10018137 3300028800 Bacteria 7550
83 Ga0265338_10039335 3300028800 Bacteria 4463
84 Ga0265338_10058826 3300028800 Bacteria 3389
85 Ga0314311_1091172 3300030733 Bacteria 4755
86 Ga0316179_1024965 3300030734 Bacteria 8929
87 Ga0316181_1036126 3300030744 Bacteria 3296
88 Ga0316182_1100957 3300030745 Bacteria 26728
89 Ga0265330_10015493 3300031235 Bacteria 3526
90 Ga0265332_10033809 3300031238 Archaea 2224
91 Ga0265320_10051771 3300031240 Unclassified 1990
92 Ga0265325_10046447 3300031241 Bacteria 2252
93 Ga0265329_10007404 3300031242 Unclassified 4251
94 Ga0265329_10017823 3300031242 Bacteria 2436
95 Ga0265340_10040350 3300031247 Archaea 2299
96 Ga0265339_10016436 3300031249 Unclassified 4410
97 Ga0265339_10065375 3300031249 Bacteria 1950
98 Ga0265331_10043242 3300031250 Bacteria 2183
99 Ga0265327_10011214 3300031251 Bacteria 6206
100 Ga0265327_10022301 3300031251 Bacteria 3791
101 Ga0265316_10004852 3300031344 Bacteria 13255
102 Ga0265316_10004980 3300031344 Bacteria 13044
103 Ga0265316_10023390 3300031344 Bacteria 5191
104 Ga0265316_10130321 3300031344 Unclassified 1895
105 Ga0265316_10134891 3300031344 Bacteria 1857
106 Ga0265313_10025305 3300031595 Bacteria 3148
107 Ga0265314_10071679 3300031711 Bacteria 2317
108 Ga0265342_10040224 3300031712 Bacteria 2836
109 Ga0265342_10049967 3300031712 Bacteria 2500
110 Ga0316576_10017134 3300031727 Bacteria 4914
111 Ga0316576_10048610 3300031727 Unclassified 3077
112 Ga0316578_10055348 3300031728 Bacteria 2328
113 Ga0307516_10007258 3300031730 Bacteria 12764
114 Ga0307410_10258654 3300031852 Bacteria 1357
115 Ga0307406_10000098 3300031901 Bacteria 49767
116 Ga0316574_0117937 3300035398 Bacteria 1703
117 Ga0373947_0012038 3300035725 Bacteria 4955
118 Ga0373937_0141892 3300036401 Bacteria 2248
119 Ga0316582_0060448 3300036647 Bacteria 2429
120 Ga0316584_0067399 3300036712 Bacteria 2683
121 Ga0395900_0009749 3300037418 Bacteria 9838
122 Ga0395898_0011447 3300037466 Bacteria 9213
123 Ga0400489_79024 3300039093 Bacteria 43724
124 Ga0436360_1103825 3300039438 Bacteria 2581
125 Ga0439431_0010044 3300041997 Bacteria 2144
126 Ga0450922_003941 3300042124 Bacteria 1365
127 Ga0450923_000166 3300042125 Bacteria 6067
128 Ga0450910_000595 3300042147 Bacteria 4299
129 Ga0451577_0171649 3300042876 Bacteria 1954
130 Ga0453684_0096041 3300044712 Bacteria 3642
131 Ga0453684_0218222 3300044712 Unclassified 2211
132 Ga0453684_0321983 3300044712 Bacteria 1751
133 Ga0451576_0002541 3300045051 Bacteria 27003
134 Ga0451576_0011977 3300045051 Bacteria 9796
135 Ga0451576_0137096 3300045051 Bacteria 2552
136 Ga0495638_0000285 3300046460 Bacteria 67536
137 Ga0495653_0107788 3300046463 Bacteria 2007
138 Ga0495653_0223622 3300046463 Bacteria 1264
139 Ga0495618_0033422 3300046514 Bacteria 3225
140 Ga0495628_0026188 3300046516 Bacteria 4760
141 Ga0495630_0094662 3300046517 Bacteria 2258
142 Ga0495597_0030375 3300046542 Bacteria 2463
143 Ga0495634_0007834 3300046642 Bacteria 7984
144 Ga0495600_0155719 3300046809 Bacteria 1478
145 Ga0495674_0072801 3300047319 Bacteria 2963
146 Ga0495684_0176633 3300047471 Bacteria 1585
147 Ga0496107_0023679 3300048910 Unclassified 4340
148 Ga0496115_0000001 3300048918 Bacteria 367230
149 Ga0501031_0002845 3300049568 Bacteria 11046
150 Ga0501031_0005412 3300049568 Bacteria 8311
151 Ga0501031_0170602 3300049568 Bacteria 1422
152 Ga0501032_0009592 3300049569 Bacteria 7016
153 Ga0501036_0025878 3300049572 Bacteria 4951
154 Ga0501036_0039318 3300049572 Bacteria 4003
155 Ga0501036_0135234 3300049572 Unclassified 2081
156 Ga0501038_0221477 3300049574 Bacteria 1509
157 Ga0501039_0257262 3300049575 Bacteria 1372
158 Ga0501040_0003230 3300049576 Bacteria 10548
159 Ga0501040_0003655 3300049576 Bacteria 9959
160 Ga0501040_0190779 3300049576 Bacteria 1454
161 Ga0501041_0002989 3300049577 Bacteria 9698
162 Ga0501041_0029295 3300049577 Bacteria 3321
163 Ga0501042_0020122 3300049578 Bacteria 4641
164 Ga0501042_0020133 3300049578 Bacteria 4640
165 Ga0501042_0047911 3300049578 Bacteria 3047
166 Ga0501043_0039579 3300049579 Bacteria 3705
167 Ga0501046_0018711 3300049580 Bacteria 5757
168 Ga0501048_0006013 3300049582 Bacteria 9241
169 Ga0501048_0008949 3300049582 Bacteria 7538
170 Ga0501048_0219173 3300049582 Bacteria 1350
171 Ga0501048_0245069 3300049582 Bacteria 1272
172 Ga0501067_0004689 3300049583 Bacteria 7567
173 Ga0501067_0007169 3300049583 Bacteria 6193
174 Ga0501067_0033745 3300049583 Bacteria 2839
175 Ga0501068_0009980 3300049584 Bacteria 5325
176 Ga0501068_0093797 3300049584 Bacteria 1855
177 Ga0501069_0005507 3300049585 Bacteria 6591
178 Ga0501069_0079063 3300049585 Bacteria 1850
179 Ga0501070_0008410 3300049586 Bacteria 8716
180 Ga0501070_0091879 3300049586 Bacteria 2512
181 Ga0501071_0003208 3300049587 Bacteria 10183
182 Ga0501071_0003359 3300049587 Bacteria 10002
183 Ga0501071_0005971 3300049587 Bacteria 7887
184 Ga0501071_0022086 3300049587 Bacteria 4434
185 Ga0501071_0030844 3300049587 Bacteria 3794
186 Ga0501071_0052529 3300049587 Bacteria 2939
187 Ga0501071_0053049 3300049587 Bacteria 2924
188 Ga0501072_0002337 3300049588 Bacteria 14222
189 Ga0501072_0002361 3300049588 Bacteria 14164
190 Ga0501072_0014766 3300049588 Bacteria 5987
191 Ga0501072_0075215 3300049588 Bacteria 2671
192 Ga0501072_0216111 3300049588 Bacteria 1528
193 Ga0501073_0123875 3300049589 Unclassified 1792
194 Ga0501073_0148645 3300049589 Bacteria 1624
195 Ga0501074_0006345 3300049590 Bacteria 8541
196 Ga0501074_0132032 3300049590 Unclassified 1786
197 Ga0501075_0007795 3300049591 Bacteria 7431
198 Ga0501075_0042583 3300049591 Bacteria 3404
199 Ga0501075_0158056 3300049591 Bacteria 1729
200 Ga0501076_0002634 3300049592 Bacteria 12378
201 Ga0501076_0006457 3300049592 Bacteria 8510
202 Ga0501076_0009665 3300049592 Bacteria 7124
203 Ga0501076_0024109 3300049592 Bacteria 4699
204 Ga0501076_0085698 3300049592 Bacteria 2531
205 Ga0501077_0025017 3300049593 Bacteria 3791
206 Ga0501079_0006974 3300049741 Bacteria 8515
207 Ga0501079_0137749 3300049741 Bacteria 1901
208 Ga0501079_0138373 3300049741 Bacteria 1896
209 Ga0501079_0168557 3300049741 Unclassified 1708
210 Ga0501079_0225634 3300049741 Unclassified 1464
211 Ga0501080_0014665 3300049742 Bacteria 7217
212 Ga0501080_0217330 3300049742 Bacteria 1750
213 Ga0501081_0009588 3300049743 Bacteria 6313
214 Ga0501081_0029622 3300049743 Bacteria 3700
215 Ga0501081_0070487 3300049743 Bacteria 2436
216 Ga0501035_0236269 3300049822 Bacteria 1556
217 Ga0501045_0000505 3300049824 Bacteria 24256
218 Ga0501045_0048250 3300049824 Bacteria 3104
219 nmdc:mga09592_137139_c1 3300050508 Bacteria 2107
220 nmdc:mga08y16_104038_c1 3300050511 Bacteria 2956
221 Ga0495601_0012611 3300053077 Bacteria 5068
222 Ga0495595_0005819 3300053084 Bacteria 4992
223 Ga0495619_0005000 3300053085 Bacteria 8420
224 Ga0500555_000023 3300053103 Bacteria 150521
225 Ga0500569_000009 3300053109 Bacteria 67536
226 Ga0500588_0000078 3300053146 Bacteria 13106
227 Ga0501084_0003642 3300054114 Bacteria 12510
228 Ga0501084_0008008 3300054114 Bacteria 8701
229 Ga0501084_0008236 3300054114 Bacteria 8600
230 Ga0590071_000445 3300059421 Bacteria 12001
231 Ga0590075_001813 3300059424 Bacteria 5219
232 Ga0590077_000931 3300059426 Bacteria 7467
233 Ga0590077_019189 3300059426 Bacteria 1447
234 Ga0501082_0021157 3300060353 Bacteria 5610
235 Ga0501082_0113124 3300060353 Bacteria 2350
236 Ga0501082_0153104 3300060353 Bacteria 2003
237 Ga0501082_0237760 3300060353 Bacteria 1585
238 Ga0501082_0240091 3300060353 Unclassified 1577
239 Ga0530510_0018028 3300061734 Bacteria 5004
240 Ga0530510_0033745 3300061734 Bacteria 3684
241 Ga0530510_0155367 3300061734 Bacteria 1690
242 Ga0530510_0193301 3300061734 Bacteria 1511

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046463 Ga0495653_0223622 Ga0495653_0223622_102_1235 312
2 3300060353 Ga0501082_0240091 Ga0501082_0240091_217_1335 320
3 3300005329 Ga0070683_100055923 Ga0070683_1000559233 322
4 3300005535 Ga0070684_100214435 Ga0070684_1002144352 322
5 3300025944 Ga0207661_10069641 Ga0207661_100696413 322
6 3300049576 Ga0501040_0190779 Ga0501040_0190779_124_1248 322
7 3300005544 Ga0070686_100001633 Ga0070686_1000016336 330
8 3300042876 Ga0451577_0171649 Ga0451577_0171649_697_1797 334
9 3300049577 Ga0501041_0029295 Ga0501041_0029295_2256_3308 334
10 3300005468 Ga0070707_100013748 Ga0070707_1000137484 336
11 3300014325 Ga0163163_10142328 Ga0163163_101423282 336
12 3300046517 Ga0495630_0094662 Ga0495630_0094662_932_2041 336
13 3300048910 Ga0496107_0023679 Ga0496107_0023679_2726_3835 336
14 3300049572 Ga0501036_0135234 Ga0501036_0135234_449_1633 336
15 3300049582 Ga0501048_0245069 Ga0501048_0245069_95_1246 336
16 3300059421 Ga0590071_000445 Ga0590071_000445_1763_2881 336
17 3300059424 Ga0590075_001813 Ga0590075_001813_420_1538 336
18 3300059426 Ga0590077_000931 Ga0590077_000931_5480_6598 336
19 3300014325 Ga0163163_10074891 Ga0163163_100748913 337
20 3300031251 Ga0265327_10011214 Ga0265327_100112142 337
21 3300005336 Ga0070680_100020073 Ga0070680_1000200735 338
22 3300005530 Ga0070679_100006651 Ga0070679_1000066513 338
23 3300025921 Ga0207652_10004928 Ga0207652_100049283 338
24 3300028800 Ga0265338_10000074 Ga0265338_1000007412 338
25 3300025940 Ga0207691_10135869 Ga0207691_101358692 341
26 3300005618 Ga0068864_100160904 Ga0068864_1001609042 342
27 3300026095 Ga0207676_10328098 Ga0207676_103280981 342
28 3300028573 Ga0265334_10012156 Ga0265334_100121563 343
29 3300028654 Ga0265322_10003623 Ga0265322_100036234 343
30 3300028800 Ga0265338_10000894 Ga0265338_1000089413 343
31 3300031251 Ga0265327_10022301 Ga0265327_100223012 343
32 3300031344 Ga0265316_10004980 Ga0265316_100049806 343
33 3300014325 Ga0163163_10292180 Ga0163163_102921801 344
34 3300005467 Ga0070706_100065045 Ga0070706_1000650452 346
35 3300005546 Ga0070696_100013411 Ga0070696_1000134114 346
36 3300028558 Ga0265326_10010447 Ga0265326_100104472 346
37 3300028573 Ga0265334_10007414 Ga0265334_100074142 346
38 3300028577 Ga0265318_10027550 Ga0265318_100275502 346
39 3300028666 Ga0265336_10015562 Ga0265336_100155622 346
40 3300028800 Ga0265338_10000979 Ga0265338_1000097911 346
41 3300028800 Ga0265338_10058826 Ga0265338_100588263 346
42 3300031238 Ga0265332_10033809 Ga0265332_100338092 346
43 3300031242 Ga0265329_10007404 Ga0265329_100074042 346
44 3300031247 Ga0265340_10040350 Ga0265340_100403502 346
45 3300031249 Ga0265339_10016436 Ga0265339_100164363 346
46 3300031344 Ga0265316_10004852 Ga0265316_100048529 346
47 3300031595 Ga0265313_10025305 Ga0265313_100253053 346
48 3300005530 Ga0070679_100261607 Ga0070679_1002616072 348
49 3300006871 Ga0075434_100338842 Ga0075434_1003388421 348
50 3300031727 Ga0316576_10048610 Ga0316576_100486103 349
51 3300025910 Ga0207684_10188936 Ga0207684_101889362 351
52 3300049587 Ga0501071_0052529 Ga0501071_0052529_1477_2601 351
53 3300028577 Ga0265318_10018066 Ga0265318_100180663 355
54 3300031728 Ga0316578_10055348 Ga0316578_100553482 355
55 3300035398 Ga0316574_0117937 Ga0316574_0117937_198_1304 355
56 3300036401 Ga0373937_0141892 Ga0373937_0141892_850_1953 355
57 3300036647 Ga0316582_0060448 Ga0316582_0060448_156_1262 355
58 3300036712 Ga0316584_0067399 Ga0316584_0067399_1187_2293 355
59 3300042124 Ga0450922_003941 Ga0450922_003941_175_1284 355
60 3300042125 Ga0450923_000166 Ga0450923_000166_1443_2552 355
61 3300044712 Ga0453684_0321983 Ga0453684_0321983_618_1718 355
62 3300046463 Ga0495653_0107788 Ga0495653_0107788_500_1603 355
63 3300046514 Ga0495618_0033422 Ga0495618_0033422_532_1635 355
64 3300046516 Ga0495628_0026188 Ga0495628_0026188_136_1239 355
65 3300046642 Ga0495634_0007834 Ga0495634_0007834_225_1328 355
66 3300046809 Ga0495600_0155719 Ga0495600_0155719_96_1199 355
67 3300047319 Ga0495674_0072801 Ga0495674_0072801_336_1439 355
68 3300047471 Ga0495684_0176633 Ga0495684_0176633_263_1366 355
69 3300049578 Ga0501042_0020133 Ga0501042_0020133_11_1126 355
70 3300053077 Ga0495601_0012611 Ga0495601_0012611_3554_4657 355
71 3300053084 Ga0495595_0005819 Ga0495595_0005819_2230_3333 355
72 3300053085 Ga0495619_0005000 Ga0495619_0005000_3622_4725 355
73 3300044712 Ga0453684_0218222 Ga0453684_0218222_1049_2167 358
74 3300045051 Ga0451576_0137096 Ga0451576_0137096_1039_2148 358
75 3300003316 rootH1_10060286 rootH1_100602862 360
76 3300005295 Ga0065707_10105891 Ga0065707_101058911 360
77 3300005440 Ga0070705_100007370 Ga0070705_1000073704 360
78 3300005445 Ga0070708_100075836 Ga0070708_1000758364 360
79 3300005445 Ga0070708_100095368 Ga0070708_1000953682 360
80 3300005458 Ga0070681_10063294 Ga0070681_100632942 360
81 3300005468 Ga0070707_100071700 Ga0070707_1000717003 360
82 3300005468 Ga0070707_100085685 Ga0070707_1000856853 360
83 3300005468 Ga0070707_100112631 Ga0070707_1001126312 360
84 3300005471 Ga0070698_100007524 Ga0070698_1000075247 360
85 3300005546 Ga0070696_100002700 Ga0070696_1000027005 360
86 3300005546 Ga0070696_100027619 Ga0070696_1000276192 360
87 3300005985 Ga0081539_10012250 Ga0081539_100122506 360
88 3300009147 Ga0114129_10035669 Ga0114129_100356696 360
89 3300014326 Ga0157380_10348117 Ga0157380_103481171 360
90 3300025922 Ga0207646_10023531 Ga0207646_100235312 360
91 3300025922 Ga0207646_10030795 Ga0207646_100307954 360
92 3300025922 Ga0207646_10073885 Ga0207646_100738853 360
93 3300026089 Ga0207648_10167140 Ga0207648_101671402 360
94 3300027424 Ga0209984_1006154 Ga0209984_10061541 360
95 3300027682 Ga0209971_1001036 Ga0209971_10010367 360
96 3300027717 Ga0209998_10000293 Ga0209998_100002939 360
97 3300027717 Ga0209998_10003947 Ga0209998_100039472 360
98 3300027876 Ga0209974_10001385 Ga0209974_100013854 360
99 3300027876 Ga0209974_10002462 Ga0209974_100024625 360
100 3300027907 Ga0207428_10016623 Ga0207428_100166236 360
101 3300028558 Ga0265326_10009070 Ga0265326_100090703 360
102 3300031235 Ga0265330_10015493 Ga0265330_100154931 360
103 3300031242 Ga0265329_10017823 Ga0265329_100178232 360
104 3300031344 Ga0265316_10023390 Ga0265316_100233901 360
105 3300031712 Ga0265342_10040224 Ga0265342_100402241 360
106 3300031727 Ga0316576_10017134 Ga0316576_100171341 360
107 3300031852 Ga0307410_10258654 Ga0307410_102586542 360
108 3300035725 Ga0373947_0012038 Ga0373947_0012038_2770_3888 360
109 3300039438 Ga0436360_1103825 Ga0436360_1103825_686_1810 360
110 3300041997 Ga0439431_0010044 Ga0439431_0010044_419_1519 360
111 3300042147 Ga0450910_000595 Ga0450910_000595_543_1667 360
112 3300045051 Ga0451576_0011977 Ga0451576_0011977_884_2014 360
113 3300049568 Ga0501031_0002845 Ga0501031_0002845_7268_8398 360
114 3300049568 Ga0501031_0005412 Ga0501031_0005412_4252_5376 360
115 3300049568 Ga0501031_0170602 Ga0501031_0170602_259_1383 360
116 3300049569 Ga0501032_0009592 Ga0501032_0009592_2143_3267 360
117 3300049572 Ga0501036_0025878 Ga0501036_0025878_1076_2200 360
118 3300049572 Ga0501036_0039318 Ga0501036_0039318_2672_3796 360
119 3300049574 Ga0501038_0221477 Ga0501038_0221477_227_1351 360
120 3300049575 Ga0501039_0257262 Ga0501039_0257262_88_1212 360
121 3300049576 Ga0501040_0003230 Ga0501040_0003230_5173_6297 360
122 3300049576 Ga0501040_0003655 Ga0501040_0003655_3852_4982 360
123 3300049577 Ga0501041_0002989 Ga0501041_0002989_3010_4134 360
124 3300049578 Ga0501042_0020122 Ga0501042_0020122_164_1288 360
125 3300049578 Ga0501042_0047911 Ga0501042_0047911_1471_2595 360
126 3300049579 Ga0501043_0039579 Ga0501043_0039579_1038_2162 360
127 3300049580 Ga0501046_0018711 Ga0501046_0018711_985_2109 360
128 3300049582 Ga0501048_0006013 Ga0501048_0006013_7735_8865 360
129 3300049582 Ga0501048_0008949 Ga0501048_0008949_3730_4854 360
130 3300049582 Ga0501048_0219173 Ga0501048_0219173_183_1331 360
131 3300049583 Ga0501067_0004689 Ga0501067_0004689_6305_7435 360
132 3300049583 Ga0501067_0007169 Ga0501067_0007169_4883_6070 360
133 3300049584 Ga0501068_0009980 Ga0501068_0009980_2666_3790 360
134 3300049584 Ga0501068_0093797 Ga0501068_0093797_389_1522 360
135 3300049585 Ga0501069_0005507 Ga0501069_0005507_4771_5895 360
136 3300049585 Ga0501069_0079063 Ga0501069_0079063_61_1248 360
137 3300049586 Ga0501070_0091879 Ga0501070_0091879_1171_2358 360
138 3300049587 Ga0501071_0003208 Ga0501071_0003208_5762_6886 360
139 3300049587 Ga0501071_0003359 Ga0501071_0003359_7226_8356 360
140 3300049587 Ga0501071_0005971 Ga0501071_0005971_1125_2249 360
141 3300049587 Ga0501071_0022086 Ga0501071_0022086_3001_4149 360
142 3300049587 Ga0501071_0053049 Ga0501071_0053049_393_1544 360
143 3300049588 Ga0501072_0002337 Ga0501072_0002337_4866_5990 360
144 3300049588 Ga0501072_0002361 Ga0501072_0002361_7664_8794 360
145 3300049588 Ga0501072_0075215 Ga0501072_0075215_909_2081 360
146 3300049588 Ga0501072_0216111 Ga0501072_0216111_211_1344 360
147 3300049589 Ga0501073_0148645 Ga0501073_0148645_227_1351 360
148 3300049590 Ga0501074_0006345 Ga0501074_0006345_2807_3931 360
149 3300049591 Ga0501075_0007795 Ga0501075_0007795_1102_2226 360
150 3300049591 Ga0501075_0042583 Ga0501075_0042583_1663_2787 360
151 3300049591 Ga0501075_0158056 Ga0501075_0158056_369_1517 360
152 3300049592 Ga0501076_0002634 Ga0501076_0002634_3429_4559 360
153 3300049592 Ga0501076_0006457 Ga0501076_0006457_2789_3913 360
154 3300049592 Ga0501076_0009665 Ga0501076_0009665_5273_6421 360
155 3300049592 Ga0501076_0085698 Ga0501076_0085698_1160_2284 360
156 3300049741 Ga0501079_0006974 Ga0501079_0006974_3110_4234 360
157 3300049741 Ga0501079_0137749 Ga0501079_0137749_128_1261 360
158 3300049741 Ga0501079_0138373 Ga0501079_0138373_684_1832 360
159 3300049741 Ga0501079_0168557 Ga0501079_0168557_264_1379 360
160 3300049741 Ga0501079_0225634 Ga0501079_0225634_190_1311 360
161 3300049742 Ga0501080_0014665 Ga0501080_0014665_2916_4040 360
162 3300049742 Ga0501080_0217330 Ga0501080_0217330_583_1713 360
163 3300049743 Ga0501081_0009588 Ga0501081_0009588_2065_3189 360
164 3300049743 Ga0501081_0029622 Ga0501081_0029622_107_1255 360
165 3300049743 Ga0501081_0070487 Ga0501081_0070487_330_1454 360
166 3300049822 Ga0501035_0236269 Ga0501035_0236269_249_1373 360
167 3300049824 Ga0501045_0000505 Ga0501045_0000505_12714_13838 360
168 3300049824 Ga0501045_0048250 Ga0501045_0048250_867_1991 360
169 3300050508 nmdc:mga09592_137139_c1 nmdc:mga09592_137139_c1_286_1410 360
170 3300050511 nmdc:mga08y16_104038_c1 nmdc:mga08y16_104038_c1_588_1718 360
171 3300054114 Ga0501084_0008008 Ga0501084_0008008_7335_8465 360
172 3300054114 Ga0501084_0008236 Ga0501084_0008236_2811_3935 360
173 3300059426 Ga0590077_019189 Ga0590077_019189_96_1226 360
174 3300060353 Ga0501082_0021157 Ga0501082_0021157_1735_2859 360
175 3300060353 Ga0501082_0113124 Ga0501082_0113124_119_1267 360
176 3300060353 Ga0501082_0153104 Ga0501082_0153104_499_1623 360
177 3300060353 Ga0501082_0237760 Ga0501082_0237760_239_1369 360
178 3300061734 Ga0530510_0018028 Ga0530510_0018028_3038_4162 360
179 3300061734 Ga0530510_0033745 Ga0530510_0033745_960_2147 360
180 3300061734 Ga0530510_0155367 Ga0530510_0155367_357_1481 360
181 3300061734 Ga0530510_0193301 Ga0530510_0193301_173_1294 360
182 3300005435 Ga0070714_100084310 Ga0070714_1000843102 361
183 3300005530 Ga0070679_100122068 Ga0070679_1001220682 361
184 3300005563 Ga0068855_100155687 Ga0068855_1001556872 361
185 3300013104 Ga0157370_10048283 Ga0157370_100482834 361
186 3300025917 Ga0207660_10241196 Ga0207660_102411961 361
187 3300025929 Ga0207664_10064447 Ga0207664_100644472 361
188 3300025949 Ga0207667_10083601 Ga0207667_100836012 361
189 3300028556 Ga0265337_1020260 Ga0265337_10202602 361
190 3300028558 Ga0265326_10023503 Ga0265326_100235032 361
191 3300028563 Ga0265319_1000500 Ga0265319_100050014 361
192 3300028573 Ga0265334_10002189 Ga0265334_100021897 361
193 3300028800 Ga0265338_10018137 Ga0265338_100181375 361
194 3300028800 Ga0265338_10039335 Ga0265338_100393356 361
195 3300031240 Ga0265320_10051771 Ga0265320_100517713 361
196 3300031241 Ga0265325_10046447 Ga0265325_100464472 361
197 3300031249 Ga0265339_10065375 Ga0265339_100653752 361
198 3300031250 Ga0265331_10043242 Ga0265331_100432422 361
199 3300031344 Ga0265316_10130321 Ga0265316_101303213 361
200 3300031344 Ga0265316_10134891 Ga0265316_101348912 361
201 3300031711 Ga0265314_10071679 Ga0265314_100716792 361
202 3300031712 Ga0265342_10049967 Ga0265342_100499672 361
203 3300037418 Ga0395900_0009749 Ga0395900_0009749_2712_3797 361
204 3300037466 Ga0395898_0011447 Ga0395898_0011447_639_1724 361
205 3300039093 Ga0400489_79024 Ga0400489_79024_39567_40697 361
206 3300049583 Ga0501067_0033745 Ga0501067_0033745_206_1333 361
207 3300049586 Ga0501070_0008410 Ga0501070_0008410_6676_7803 361
208 3300049587 Ga0501071_0030844 Ga0501071_0030844_2502_3629 361
209 3300049588 Ga0501072_0014766 Ga0501072_0014766_4159_5286 361
210 3300049589 Ga0501073_0123875 Ga0501073_0123875_610_1737 361
211 3300049590 Ga0501074_0132032 Ga0501074_0132032_504_1631 361
212 3300049592 Ga0501076_0024109 Ga0501076_0024109_1032_2159 361
213 3300049593 Ga0501077_0025017 Ga0501077_0025017_912_2039 361
214 3300054114 Ga0501084_0003642 Ga0501084_0003642_3803_4930 361
215 3300045051 Ga0451576_0002541 Ga0451576_0002541_8421_9530 362
216 3300005329 Ga0070683_100160617 Ga0070683_1001606171 363
217 3300005339 Ga0070660_100003502 Ga0070660_1000035026 363
218 3300005563 Ga0068855_100276993 Ga0068855_1002769932 363
219 3300009098 Ga0105245_10000001 Ga0105245_10000001819 363
220 3300025927 Ga0207687_10000001 Ga0207687_10000001380 363
221 3300025927 Ga0207687_10000004 Ga0207687_10000004452 363
222 3300044712 Ga0453684_0096041 Ga0453684_0096041_1097_2224 363
223 3300003316 rootH1_10010855 rootH1_1001085529 366
224 3300003320 rootH2_10004711 rootH2_10004711103 366
225 3300005339 Ga0070660_100001123 Ga0070660_10000112310 366
226 3300005563 Ga0068855_100000017 Ga0068855_10000001790 366
227 3300005577 Ga0068857_100000251 Ga0068857_10000025132 366
228 3300006353 Ga0075370_10007719 Ga0075370_100077192 366
229 3300013105 Ga0157369_10000168 Ga0157369_100001682 366
230 3300030733 Ga0314311_1091172 Ga0314311_10911725 366
231 3300030734 Ga0316179_1024965 Ga0316179_10249653 366
232 3300030744 Ga0316181_1036126 Ga0316181_10361262 366
233 3300030745 Ga0316182_1100957 Ga0316182_11009573 366
234 3300031730 Ga0307516_10007258 Ga0307516_100072583 366
235 3300031901 Ga0307406_10000098 Ga0307406_100000987 366
236 3300046460 Ga0495638_0000285 Ga0495638_0000285_62924_64024 366
237 3300046542 Ga0495597_0030375 Ga0495597_0030375_1158_2258 366
238 3300048918 Ga0496115_0000001 Ga0496115_0000001_265875_266975 366
239 3300053103 Ga0500555_000023 Ga0500555_000023_95216_96319 366
240 3300053109 Ga0500569_000009 Ga0500569_000009_62924_64024 366
241 3300053146 Ga0500588_0000078 Ga0500588_0000078_8508_9608 366

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02767

DNA_pol3_beta_2

DNA polymerase III beta subunit, central domain

150

267

0.96

PF02768

DNA_pol3_beta_3

DNA polymerase III beta subunit, C-terminal domain

269

392

0.96

PF00712

DNA_pol3_beta

DNA polymerase III beta subunit, N-terminal domain

22

141

0.94

PF00712

DNA_pol3_beta

DNA polymerase III beta subunit, N-terminal domain

150

268

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
7ybd-assembly1.cif.gz_A-2 crystal structure of sliding dna clamp of clostridioides difficile 0.9512 1 366
7ybd-assembly1.cif.gz_A-2 crystal structure of sliding dna clamp of clostridioides difficile 0.9487 1 366
3f1v-assembly1.cif.gz_B e. coli beta sliding clamp, 148-153 ala mutant 0.9459 1 366
4tr6-assembly1.cif.gz_B crystal structure of dna polymerase sliding clamp from bacillus subtilis 0.9458 1 366
2avt-assembly1.cif.gz_B crystal structure of the beta subunit from dna polymerase of streptococcus pyogenes 0.9433 1 366
ID Description Score Start End Superfamily
af_Q2G2H4_135_255_3.10.150.10 Alpha Beta;Roll;DNA Polymerase III; Chain A, domain 2;DNA Polymerase III, subunit A, domain 2 0.9579 129 245 3.10.150.10
af_Q2G2H4_2_131_3.10.150.10 Alpha Beta;Roll;DNA Polymerase III; Chain A, domain 2;DNA Polymerase III, subunit A, domain 2 0.9537 1 121 3.10.150.10
1vpkA03 Alpha Beta;Roll;DNA Polymerase III; Chain A, domain 2;DNA Polymerase III, subunit A, domain 2 0.9522 247 366 3.10.150.10
5aguA01 Alpha Beta;Roll;DNA Polymerase III; Chain A, domain 2;DNA Polymerase III, subunit A, domain 2 0.9449 2 121 3.10.150.10
af_Q2G2H4_2_244_3.10.150.10 Alpha Beta;Roll;DNA Polymerase III; Chain A, domain 2;DNA Polymerase III, subunit A, domain 2 0.9426 1 234 3.10.150.10
ID Description Score Start End GO Terms
AF-A5KRZ4-F1-model_v4 DNA-directed DNA polymerase (EC 2.7.7.7) 0.9913 1 201 GO:0003677
GO:0003887
GO:0005737
GO:0006271
GO:0008408
GO:0009360
AF-A0A660LVT2-F1-model_v4 DNA polymerase III subunit beta (EC 2.7.7.7) 0.984 128 366 GO:0003677
GO:0003887
GO:0005737
GO:0006271
GO:0008408
GO:0009360
AF-A5KRZ4-F1-model_v4 DNA-directed DNA polymerase (EC 2.7.7.7) 0.9816 1 201 GO:0003677
GO:0003887
GO:0005737
GO:0006271
GO:0008408
GO:0009360
AF-A0A660M8X2-F1-model_v4 DNA polymerase III subunit beta 0.9815 1 183 GO:0003677
GO:0003887
GO:0005737
GO:0006271
GO:0008408
GO:0009360
AF-A0A2E0BET3-F1-model_v4 deleted 0.979 1 121

Feature Viewer

pLDDT pTM Quality
93.65 0.89 High
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Predicted Structure (AlphaFold2)

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