F353685

General Info

Members Datasets Scaffolds Average Seq Length
241 139 241 334

Family's Representative Sequence

Representative Sequence 3300006852|Ga0075433_10087382|Ga0075433_100873824
Length 368
Sequence VEGAATGVLMRALRNAERDNGTASITKSEEPLGVVLTPIVAKQPLTLEALRGRLLAVDGNGELYQFLALIRLRDGTPLRDSKGRITSHLNGLFYRTTRLIADYGARFVFVFDGTPPPRKAAEIERRRSIRRRYEAERDEALRAGDLATAYSKSTMTSRLTRDMVAEARELLRLLGIPTVQAPSEAEAQAAYMASSAKVWAAASKDYDSLLFGAPRVVRFLTISGKEFLPSKGESRPIEPELLDLDTLLAGWRITRAQLIDLAILVGTDFNDGVKGIGPKKALALVREHGRIERMPPEIQDAVGDVGEVRRIYLDPPVTDDYDLSAGVPDAAGVRKFLCEEREFSAERVGAALDRAFGRGRAEQPTLFG

Samples

Sample ID Description Type Environment
1 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
17 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
18 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
19 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
20 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
21 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
22 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
23 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
24 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
25 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
26 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
27 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
28 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
29 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
30 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
31 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
32 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
33 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
34 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
35 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
36 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
37 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
38 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
39 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
40 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
41 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
42 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
43 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
44 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
45 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
46 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
47 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
48 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
49 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
50 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
51 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
52 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
53 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
54 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
55 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
56 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
57 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
58 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
59 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
60 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
61 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
62 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
63 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
64 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
91 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
94 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
95 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
96 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
97 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
98 3300034817 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 Metagenome Rhizosphere
99 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
100 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
101 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
102 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
103 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
104 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
105 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
106 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
107 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
108 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
109 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
110 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
111 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
112 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
113 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
114 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
115 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
120 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
121 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
122 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
123 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
124 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
126 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
127 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
128 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
129 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
130 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
131 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
132 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
133 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
134 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
135 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
136 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
137 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
138 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
139 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.49
Nodule 0
Rhizoplane 0.41
Rhizosphere 97.1
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065715_10152020 3300005293 Unclassified 1718
2 Ga0065707_10086780 3300005295 Bacteria 5290
3 Ga0070676_10056168 3300005328 Bacteria 2325
4 Ga0070690_100050386 3300005330 Bacteria 2657
5 Ga0070670_100048590 3300005331 Bacteria 3651
6 Ga0070670_100083771 3300005331 Unclassified 2739
7 Ga0070666_10050596 3300005335 Bacteria 2795
8 Ga0070680_100319282 3300005336 Bacteria 1318
9 Ga0070691_10002315 3300005341 Bacteria 8442
10 Ga0070668_100080927 3300005347 Unclassified 2545
11 Ga0070669_100065160 3300005353 Bacteria 2684
12 Ga0070669_100126434 3300005353 Bacteria 1956
13 Ga0070669_100175208 3300005353 Unclassified 1674
14 Ga0070675_100001425 3300005354 Bacteria 17561
15 Ga0070675_100163908 3300005354 Bacteria 1913
16 Ga0070671_100323537 3300005355 Unclassified 1314
17 Ga0070674_100006466 3300005356 Bacteria 6838
18 Ga0070688_100240403 3300005365 Bacteria 1285
19 Ga0070667_100040214 3300005367 Bacteria 3921
20 Ga0070703_10041114 3300005406 Bacteria 1440
21 Ga0070701_10004577 3300005438 Bacteria 5624
22 Ga0070705_100003311 3300005440 Bacteria 7911
23 Ga0070700_100033312 3300005441 Bacteria 3102
24 Ga0070700_100205117 3300005441 Archaea 1387
25 Ga0070694_100050752 3300005444 Bacteria 2797
26 Ga0070694_100088262 3300005444 Bacteria 2171
27 Ga0070678_100152502 3300005456 Bacteria 1863
28 Ga0070662_100372501 3300005457 Unclassified 1174
29 Ga0070681_10191698 3300005458 Bacteria 1964
30 Ga0070707_100273000 3300005468 Bacteria 1644
31 Ga0070699_100011483 3300005518 Bacteria 7648
32 Ga0070699_100031201 3300005518 Unclassified 4600
33 Ga0070697_100141216 3300005536 Unclassified 2026
34 Ga0070697_100414544 3300005536 Unclassified 1170
35 Ga0070672_100052070 3300005543 Bacteria 3195
36 Ga0070672_100182081 3300005543 Unclassified 1751
37 Ga0070686_100014773 3300005544 Bacteria 4505
38 Ga0070695_100007370 3300005545 Bacteria 6523
39 Ga0070695_100008304 3300005545 Bacteria 6161
40 Ga0070695_100165324 3300005545 Bacteria 1557
41 Ga0070696_100008747 3300005546 Bacteria 6776
42 Ga0070696_100128236 3300005546 Unclassified 1843
43 Ga0070693_100042017 3300005547 Bacteria 2575
44 Ga0070704_100004654 3300005549 Bacteria 7940
45 Ga0070704_100025957 3300005549 Bacteria 3864
46 Ga0070704_100171603 3300005549 Bacteria 1726
47 Ga0068854_100021137 3300005578 Bacteria 4413
48 Ga0070702_100001609 3300005615 Bacteria 9334
49 Ga0068859_100036257 3300005617 Bacteria 4951
50 Ga0068859_100163336 3300005617 Unclassified 2306
51 Ga0068864_100131846 3300005618 Bacteria 2246
52 Ga0068866_10010432 3300005718 Bacteria 3982
53 Ga0068861_100001283 3300005719 Bacteria 15703
54 Ga0068861_100181854 3300005719 Unclassified 1751
55 Ga0068858_100046150 3300005842 Bacteria 4039
56 Ga0068860_100177099 3300005843 Unclassified 2061
57 Ga0068862_100068995 3300005844 Bacteria 3050
58 Ga0081455_10118903 3300005937 Unclassified 2085
59 Ga0075367_10009191 3300006178 Bacteria 5155
60 Ga0075428_100000008 3300006844 Bacteria 271300
61 Ga0075428_100113672 3300006844 Bacteria 2950
62 Ga0075428_100165915 3300006844 Archaea 2395
63 Ga0075431_100137415 3300006847 Viruses 2520
64 Ga0075431_100150859 3300006847 Unclassified 2393
65 Ga0075433_10087382 3300006852 Bacteria 2753
66 Ga0075434_100005437 3300006871 Bacteria 11599
67 Ga0075434_100010984 3300006871 Bacteria 8517
68 Ga0075434_100013465 3300006871 Bacteria 7787
69 Ga0075434_100029213 3300006871 Bacteria 5421
70 Ga0075434_100049353 3300006871 Bacteria 4179
71 Ga0075434_100068296 3300006871 Bacteria 3541
72 Ga0075434_100447013 3300006871 Bacteria 1314
73 Ga0075434_100493883 3300006871 Bacteria 1245
74 Ga0075429_100044560 3300006880 Bacteria 3858
75 Ga0075436_100000004 3300006914 Bacteria 405358
76 Ga0075436_100002423 3300006914 Bacteria 12858
77 Ga0075436_100004258 3300006914 Bacteria 9821
78 Ga0075436_100031874 3300006914 Bacteria 3631
79 Ga0097620_100036256 3300006931 Bacteria 4951
80 Ga0097620_100163338 3300006931 Unclassified 2306
81 Ga0075435_100000051 3300007076 Bacteria 59038
82 Ga0075435_100001436 3300007076 Bacteria 15312
83 Ga0075435_100014753 3300007076 Bacteria 5856
84 Ga0075435_100038024 3300007076 Unclassified 3836
85 Ga0111539_10000020 3300009094 Bacteria 265282
86 Ga0111539_10020787 3300009094 Bacteria 8080
87 Ga0111539_10023546 3300009094 Bacteria 7566
88 Ga0111539_10033608 3300009094 Bacteria 6226
89 Ga0111539_10080788 3300009094 Bacteria 3824
90 Ga0105245_10092531 3300009098 Bacteria 2785
91 Ga0114129_10012482 3300009147 Bacteria 12096
92 Ga0114129_10018980 3300009147 Bacteria 9795
93 Ga0114129_10029581 3300009147 Bacteria 7757
94 Ga0114129_10029863 3300009147 Bacteria 7720
95 Ga0114129_10051064 3300009147 Bacteria 5806
96 Ga0114129_10076743 3300009147 Bacteria 4651
97 Ga0114129_10083769 3300009147 Bacteria 4428
98 Ga0114129_10150512 3300009147 Bacteria 3185
99 Ga0114129_10193868 3300009147 Unclassified 2757
100 Ga0114129_10289514 3300009147 Bacteria 2186
101 Ga0114129_10405230 3300009147 Bacteria 1797
102 Ga0114129_10436481 3300009147 Bacteria 1720
103 Ga0114129_10459661 3300009147 Unclassified 1668
104 Ga0105243_10001923 3300009148 Bacteria 17711
105 Ga0105242_10249964 3300009176 Bacteria 1597
106 Ga0105249_10136801 3300009553 Bacteria 2345
107 Ga0105249_10544537 3300009553 Unclassified 1210
108 Ga0157374_10508533 3300013296 Unclassified 1210
109 Ga0163162_10104477 3300013306 Bacteria 2927
110 Ga0157375_10022054 3300013308 Bacteria 5856
111 Ga0163163_10229548 3300014325 Unclassified 1905
112 Ga0157380_10162493 3300014326 Bacteria 1943
113 Ga0157379_10040761 3300014968 Bacteria 4145
114 Ga0207642_10045338 3300025899 Bacteria 1951
115 Ga0207645_10002543 3300025907 Bacteria 14271
116 Ga0207684_10131826 3300025910 Unclassified 2145
117 Ga0207684_10275509 3300025910 Archaea 1451
118 Ga0207707_10160451 3300025912 Bacteria 1966
119 Ga0207662_10015612 3300025918 Bacteria 4274
120 Ga0207662_10171875 3300025918 Bacteria 1390
121 Ga0207646_10124729 3300025922 Unclassified 2315
122 Ga0207681_10164938 3300025923 Unclassified 1674
123 Ga0207681_10384382 3300025923 Unclassified 1130
124 Ga0207650_10011321 3300025925 Bacteria 6138
125 Ga0207650_10374100 3300025925 Bacteria 1176
126 Ga0207659_10000728 3300025926 Bacteria 19479
127 Ga0207659_10061346 3300025926 Bacteria 2710
128 Ga0207644_10171490 3300025931 Bacteria 1694
129 Ga0207644_10184198 3300025931 Bacteria 1638
130 Ga0207706_10095139 3300025933 Unclassified 2620
131 Ga0207706_10107276 3300025933 Bacteria 2458
132 Ga0207706_10374613 3300025933 Unclassified 1236
133 Ga0207686_10182536 3300025934 Bacteria 1489
134 Ga0207709_10109798 3300025935 Bacteria 1842
135 Ga0207669_10027763 3300025937 Unclassified 3105
136 Ga0207665_10031349 3300025939 Bacteria 3517
137 Ga0207665_10177362 3300025939 Bacteria 1542
138 Ga0207711_10279504 3300025941 Bacteria 1537
139 Ga0207661_10205202 3300025944 Bacteria 1735
140 Ga0207651_10385192 3300025960 Unclassified 1189
141 Ga0207712_10031889 3300025961 Bacteria 3553
142 Ga0207658_10217162 3300025986 Bacteria 1606
143 Ga0207703_10099139 3300026035 Bacteria 2465
144 Ga0207708_10031764 3300026075 Bacteria 4009
145 Ga0207708_10121631 3300026075 Unclassified 2034
146 Ga0207648_10127073 3300026089 Bacteria 2243
147 Ga0207676_10336233 3300026095 Unclassified 1391
148 Ga0207676_10444431 3300026095 Archaea 1221
149 Ga0207675_100006387 3300026118 Bacteria 11169
150 Ga0207675_100013088 3300026118 Bacteria 7743
151 Ga0207675_100253695 3300026118 Unclassified 1703
152 Ga0207683_10258541 3300026121 Bacteria 1590
153 Ga0207428_10000051 3300027907 Bacteria 176522
154 Ga0207428_10006210 3300027907 Bacteria 11039
155 Ga0207428_10059972 3300027907 Bacteria 3014
156 Ga0207428_10108495 3300027907 Unclassified 2138
157 Ga0268265_10025809 3300028380 Bacteria 4175
158 Ga0268265_10330613 3300028380 Unclassified 1384
159 Ga0268264_10276617 3300028381 Bacteria 1571
160 Ga0307408_100186243 3300031548 Bacteria 1669
161 Ga0307410_10249929 3300031852 Bacteria 1378
162 Ga0307410_10317511 3300031852 Bacteria 1235
163 Ga0307407_10059185 3300031903 Unclassified 2230
164 Ga0307416_100027276 3300032002 Bacteria 4226
165 Ga0307411_10110759 3300032005 Unclassified 1964
166 Ga0307411_10194933 3300032005 Bacteria 1550
167 Ga0373948_0001051 3300034817 Bacteria 3723
168 Ga0373938_0001928 3300034957 Unclassified 3320
169 Ga0373949_0001555 3300035090 Bacteria 6490
170 Ga0373951_0000928 3300035091 Bacteria 7886
171 Ga0373952_0000354 3300035092 Bacteria 7749
172 Ga0373932_0000157 3300035112 Bacteria 19830
173 Ga0373939_0000138 3300035114 Bacteria 20969
174 Ga0373941_0000086 3300035115 Bacteria 15129
175 Ga0373941_0047762 3300035115 Bacteria 1349
176 Ga0373942_0007404 3300035207 Bacteria 2545
177 Ga0373961_0001181 3300035241 Bacteria 8115
178 Ga0373962_0001745 3300035242 Bacteria 5171
179 Ga0373931_0003364 3300035691 Bacteria 7168
180 Ga0439435_0009365 3300042436 Unclassified 2296
181 Ga0466963_0071538 3300044694 Bacteria 2335
182 Ga0451576_0010342 3300045051 Bacteria 10713
183 Ga0466967_0334490 3300045976 Unclassified 1463
184 Ga0496102_0090671 3300048905 Bacteria 2829
185 Ga0501034_0067894 3300049571 Unclassified 3577
186 Ga0501034_0339107 3300049571 Bacteria 1433
187 Ga0501042_0171294 3300049578 Unclassified 1566
188 Ga0501047_0083941 3300049581 Bacteria 3062
189 Ga0501047_0093859 3300049581 Bacteria 2880
190 Ga0501048_0024464 3300049582 Bacteria 4408
191 Ga0501068_0084538 3300049584 Unclassified 1952
192 Ga0501071_0005756 3300049587 Bacteria 7998
193 Ga0501072_0001975 3300049588 Bacteria 15274
194 Ga0501076_0011841 3300049592 Bacteria 6513
195 Ga0501076_0241360 3300049592 Archaea 1478
196 Ga0501081_0038672 3300049743 Bacteria 3261
197 Ga0501044_0002806 3300049823 Bacteria 19858
198 Ga0501045_0130607 3300049824 Archaea 1867
199 nmdc:mga00v17_7757_c1 3300050491 Bacteria 5750
200 nmdc:mga0k408_78405_c1 3300050493 Bacteria 1932
201 nmdc:mga06z11_57652_c1 3300050494 Bacteria 1293
202 nmdc:mga05p37_124177_c1 3300050507 Unclassified 3171
203 nmdc:mga05p37_142535_c1 3300050507 Bacteria 2935
204 nmdc:mga05p37_147388_c1 3300050507 Bacteria 2880
205 nmdc:mga05p37_18391_c1 3300050507 Bacteria 8441
206 nmdc:mga05p37_195756_c1 3300050507 Bacteria 2451
207 nmdc:mga05p37_218063_c1 3300050507 Bacteria 2304
208 nmdc:mga05p37_2828_c1 3300050507 Bacteria 20197
209 nmdc:mga05p37_4_c1 3300050507 Bacteria 162001
210 nmdc:mga05p37_508664_c1 3300050507 Unclassified 1380
211 nmdc:mga05p37_56990_c1 3300050507 Bacteria 4812
212 nmdc:mga09592_85297_c1 3300050508 Bacteria 2694
213 nmdc:mga06r32_178783_c1 3300050510 Unclassified 2107
214 nmdc:mga06r32_264908_c1 3300050510 Archaea 1706
215 nmdc:mga08y16_11388_c1 3300050511 Bacteria 9347
216 nmdc:mga08y16_114245_c1 3300050511 Bacteria 2811
217 nmdc:mga08y16_13267_c1 3300050511 Bacteria 8665
218 nmdc:mga08y16_134671_c1 3300050511 Bacteria 2568
219 nmdc:mga08y16_149143_c1 3300050511 Unclassified 2431
220 nmdc:mga08y16_74957_c1 3300050511 Bacteria 3527
221 nmdc:mga08y16_8_c1 3300050511 Bacteria 571177
222 nmdc:mga0n895_132173_c1 3300050512 Unclassified 2521
223 nmdc:mga0n895_196597_c1 3300050512 Unclassified 2048
224 nmdc:mga0n895_224982_c1 3300050512 Bacteria 1904
225 nmdc:mga0n895_37558_c1 3300050512 Bacteria 4687
226 nmdc:mga0n895_4_c1 3300050512 Bacteria 133851
227 nmdc:mga0rr50_1728_c1 3300050513 Bacteria 12046
228 nmdc:mga0rr50_2451_c1 3300050513 Bacteria 10470
229 nmdc:mga0rr50_4_c1 3300050513 Bacteria 338870
230 nmdc:mga0rr50_83231_c1 3300050513 Unclassified 2473
231 nmdc:mga0rr50_99014_c1 3300050513 Unclassified 2287
232 nmdc:mga08x19_1_c1 3300050514 Bacteria 2010344
233 nmdc:mga08x19_32918_c1 3300050514 Archaea 3270
234 nmdc:mga08x19_3412_c1 3300050514 Bacteria 9477
235 nmdc:mga08x19_60435_c1 3300050514 Unclassified 2455
236 nmdc:mga08x19_626_c1 3300050514 Archaea 22792
237 nmdc:mga0a205_220088_c1 3300050515 Unclassified 1784
238 nmdc:mga0a205_72968_c1 3300050515 Unclassified 3316
239 Ga0500641_0003200 3300053096 Bacteria 5787
240 Ga0500568_0005951 3300053139 Bacteria 6202
241 Ga0501082_0058973 3300060353 Unclassified 3308

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048905 Ga0496102_0090671 Ga0496102_0090671_799_1671 290
2 3300005545 Ga0070695_100165324 Ga0070695_1001653242 298
3 3300005354 Ga0070675_100001425 Ga0070675_1000014259 310
4 3300013296 Ga0157374_10508533 Ga0157374_105085331 310
5 3300025926 Ga0207659_10000728 Ga0207659_1000072810 310
6 3300025939 Ga0207665_10177362 Ga0207665_101773622 312
7 3300050510 nmdc:mga06r32_178783_c1 nmdc:mga06r32_178783_c1_1147_2088 313
8 3300005536 Ga0070697_100414544 Ga0070697_1004145441 314
9 3300025910 Ga0207684_10275509 Ga0207684_102755092 316
10 3300050507 nmdc:mga05p37_195756_c1 nmdc:mga05p37_195756_c1_451_1404 317
11 3300050514 nmdc:mga08x19_32918_c1 nmdc:mga08x19_32918_c1_2016_3074 317
12 3300005336 Ga0070680_100319282 Ga0070680_1003192822 319
13 3300005458 Ga0070681_10191698 Ga0070681_101916982 319
14 3300025912 Ga0207707_10160451 Ga0207707_101604512 319
15 3300049592 Ga0501076_0241360 Ga0501076_0241360_274_1236 319
16 3300049824 Ga0501045_0130607 Ga0501045_0130607_230_1192 319
17 3300035115 Ga0373941_0047762 Ga0373941_0047762_300_1307 320
18 3300025918 Ga0207662_10171875 Ga0207662_101718751 322
19 3300025939 Ga0207665_10031349 Ga0207665_100313492 322
20 3300006914 Ga0075436_100000004 Ga0075436_100000004134 323
21 3300009147 Ga0114129_10051064 Ga0114129_100510642 323
22 3300014325 Ga0163163_10229548 Ga0163163_102295482 323
23 3300050507 nmdc:mga05p37_142535_c1 nmdc:mga05p37_142535_c1_1562_2557 323
24 3300050514 nmdc:mga08x19_1_c1 nmdc:mga08x19_1_c1_1876664_1877701 323
25 3300050514 nmdc:mga08x19_626_c1 nmdc:mga08x19_626_c1_4920_5954 323
26 3300026089 Ga0207648_10127073 Ga0207648_101270732 325
27 3300009094 Ga0111539_10080788 Ga0111539_100807883 326
28 3300005295 Ga0065707_10086780 Ga0065707_100867802 330
29 3300006178 Ga0075367_10009191 Ga0075367_100091913 330
30 3300006844 Ga0075428_100165915 Ga0075428_1001659152 330
31 3300009147 Ga0114129_10012482 Ga0114129_100124826 330
32 3300009147 Ga0114129_10150512 Ga0114129_101505124 330
33 3300027907 Ga0207428_10006210 Ga0207428_100062102 330
34 3300031852 Ga0307410_10317511 Ga0307410_103175111 330
35 3300032005 Ga0307411_10194933 Ga0307411_101949332 330
36 3300049571 Ga0501034_0339107 Ga0501034_0339107_103_1110 330
37 3300049581 Ga0501047_0083941 Ga0501047_0083941_1427_2434 330
38 3300050491 nmdc:mga00v17_7757_c1 nmdc:mga00v17_7757_c1_781_1773 330
39 3300050493 nmdc:mga0k408_78405_c1 nmdc:mga0k408_78405_c1_915_1907 330
40 3300050494 nmdc:mga06z11_57652_c1 nmdc:mga06z11_57652_c1_254_1246 330
41 3300050507 nmdc:mga05p37_4_c1 nmdc:mga05p37_4_c1_127618_128613 330
42 3300050511 nmdc:mga08y16_11388_c1 nmdc:mga08y16_11388_c1_3535_4530 330
43 3300050511 nmdc:mga08y16_114245_c1 nmdc:mga08y16_114245_c1_300_1292 330
44 3300053139 Ga0500568_0005951 Ga0500568_0005951_3337_4329 330
45 3300005365 Ga0070688_100240403 Ga0070688_1002404032 331
46 3300005441 Ga0070700_100205117 Ga0070700_1002051172 331
47 3300005444 Ga0070694_100088262 Ga0070694_1000882622 331
48 3300005545 Ga0070695_100008304 Ga0070695_1000083044 331
49 3300005546 Ga0070696_100128236 Ga0070696_1001282361 331
50 3300005549 Ga0070704_100025957 Ga0070704_1000259572 331
51 3300005617 Ga0068859_100163336 Ga0068859_1001633363 331
52 3300005937 Ga0081455_10118903 Ga0081455_101189032 331
53 3300006844 Ga0075428_100113672 Ga0075428_1001136723 331
54 3300006847 Ga0075431_100150859 Ga0075431_1001508593 331
55 3300006852 Ga0075433_10087382 Ga0075433_100873824 331
56 3300006871 Ga0075434_100010984 Ga0075434_1000109841 331
57 3300006871 Ga0075434_100049353 Ga0075434_1000493532 331
58 3300006871 Ga0075434_100447013 Ga0075434_1004470132 331
59 3300006871 Ga0075434_100493883 Ga0075434_1004938831 331
60 3300006880 Ga0075429_100044560 Ga0075429_1000445602 331
61 3300006914 Ga0075436_100031874 Ga0075436_1000318743 331
62 3300006931 Ga0097620_100163338 Ga0097620_1001633382 331
63 3300007076 Ga0075435_100001436 Ga0075435_1000014363 331
64 3300009094 Ga0111539_10023546 Ga0111539_100235462 331
65 3300009147 Ga0114129_10018980 Ga0114129_100189807 331
66 3300009147 Ga0114129_10029581 Ga0114129_100295813 331
67 3300009147 Ga0114129_10029863 Ga0114129_100298634 331
68 3300009147 Ga0114129_10076743 Ga0114129_100767434 331
69 3300009147 Ga0114129_10193868 Ga0114129_101938682 331
70 3300009147 Ga0114129_10289514 Ga0114129_102895142 331
71 3300009147 Ga0114129_10405230 Ga0114129_104052302 331
72 3300009147 Ga0114129_10436481 Ga0114129_104364811 331
73 3300009147 Ga0114129_10459661 Ga0114129_104596612 331
74 3300025910 Ga0207684_10131826 Ga0207684_101318262 331
75 3300031852 Ga0307410_10249929 Ga0307410_102499292 331
76 3300031903 Ga0307407_10059185 Ga0307407_100591852 331
77 3300032002 Ga0307416_100027276 Ga0307416_1000272762 331
78 3300032005 Ga0307411_10110759 Ga0307411_101107592 331
79 3300042436 Ga0439435_0009365 Ga0439435_0009365_571_1593 331
80 3300049584 Ga0501068_0084538 Ga0501068_0084538_581_1576 331
81 3300049587 Ga0501071_0005756 Ga0501071_0005756_6044_7039 331
82 3300049588 Ga0501072_0001975 Ga0501072_0001975_1441_2436 331
83 3300049592 Ga0501076_0011841 Ga0501076_0011841_1223_2218 331
84 3300049743 Ga0501081_0038672 Ga0501081_0038672_2133_3128 331
85 3300050507 nmdc:mga05p37_124177_c1 nmdc:mga05p37_124177_c1_2162_3160 331
86 3300050507 nmdc:mga05p37_147388_c1 nmdc:mga05p37_147388_c1_24_1019 331
87 3300050507 nmdc:mga05p37_18391_c1 nmdc:mga05p37_18391_c1_913_1989 331
88 3300050507 nmdc:mga05p37_218063_c1 nmdc:mga05p37_218063_c1_1030_2025 331
89 3300050507 nmdc:mga05p37_2828_c1 nmdc:mga05p37_2828_c1_11195_12193 331
90 3300050507 nmdc:mga05p37_508664_c1 nmdc:mga05p37_508664_c1_36_1031 331
91 3300050508 nmdc:mga09592_85297_c1 nmdc:mga09592_85297_c1_340_1416 331
92 3300050511 nmdc:mga08y16_74957_c1 nmdc:mga08y16_74957_c1_1880_2875 331
93 3300050512 nmdc:mga0n895_132173_c1 nmdc:mga0n895_132173_c1_1258_2256 331
94 3300050512 nmdc:mga0n895_224982_c1 nmdc:mga0n895_224982_c1_210_1205 331
95 3300050512 nmdc:mga0n895_37558_c1 nmdc:mga0n895_37558_c1_758_1753 331
96 3300050513 nmdc:mga0rr50_2451_c1 nmdc:mga0rr50_2451_c1_62_1057 331
97 3300050513 nmdc:mga0rr50_83231_c1 nmdc:mga0rr50_83231_c1_232_1227 331
98 3300050515 nmdc:mga0a205_220088_c1 nmdc:mga0a205_220088_c1_313_1311 331
99 3300050515 nmdc:mga0a205_72968_c1 nmdc:mga0a205_72968_c1_1614_2609 331
100 3300005354 Ga0070675_100163908 Ga0070675_1001639082 333
101 3300005456 Ga0070678_100152502 Ga0070678_1001525022 333
102 3300026121 Ga0207683_10258541 Ga0207683_102585412 333
103 3300053096 Ga0500641_0003200 Ga0500641_0003200_225_1283 333
104 3300006844 Ga0075428_100000008 Ga0075428_100000008221 334
105 3300006847 Ga0075431_100137415 Ga0075431_1001374152 334
106 3300009094 Ga0111539_10000020 Ga0111539_10000020160 334
107 3300027907 Ga0207428_10000051 Ga0207428_10000051122 334
108 3300031548 Ga0307408_100186243 Ga0307408_1001862432 334
109 3300050510 nmdc:mga06r32_264908_c1 nmdc:mga06r32_264908_c1_544_1548 334
110 3300050511 nmdc:mga08y16_8_c1 nmdc:mga08y16_8_c1_101838_102842 334
111 3300005293 Ga0065715_10152020 Ga0065715_101520202 335
112 3300005328 Ga0070676_10056168 Ga0070676_100561682 335
113 3300005330 Ga0070690_100050386 Ga0070690_1000503862 335
114 3300005331 Ga0070670_100048590 Ga0070670_1000485905 335
115 3300005331 Ga0070670_100083771 Ga0070670_1000837713 335
116 3300005335 Ga0070666_10050596 Ga0070666_100505962 335
117 3300005341 Ga0070691_10002315 Ga0070691_100023158 335
118 3300005347 Ga0070668_100080927 Ga0070668_1000809271 335
119 3300005353 Ga0070669_100065160 Ga0070669_1000651602 335
120 3300005353 Ga0070669_100126434 Ga0070669_1001264343 335
121 3300005353 Ga0070669_100175208 Ga0070669_1001752082 335
122 3300005355 Ga0070671_100323537 Ga0070671_1003235371 335
123 3300005356 Ga0070674_100006466 Ga0070674_1000064664 335
124 3300005367 Ga0070667_100040214 Ga0070667_1000402143 335
125 3300005406 Ga0070703_10041114 Ga0070703_100411141 335
126 3300005438 Ga0070701_10004577 Ga0070701_100045775 335
127 3300005440 Ga0070705_100003311 Ga0070705_1000033117 335
128 3300005441 Ga0070700_100033312 Ga0070700_1000333122 335
129 3300005444 Ga0070694_100050752 Ga0070694_1000507522 335
130 3300005457 Ga0070662_100372501 Ga0070662_1003725011 335
131 3300005468 Ga0070707_100273000 Ga0070707_1002730001 335
132 3300005518 Ga0070699_100011483 Ga0070699_1000114834 335
133 3300005518 Ga0070699_100031201 Ga0070699_1000312013 335
134 3300005536 Ga0070697_100141216 Ga0070697_1001412164 335
135 3300005543 Ga0070672_100052070 Ga0070672_1000520702 335
136 3300005543 Ga0070672_100182081 Ga0070672_1001820811 335
137 3300005544 Ga0070686_100014773 Ga0070686_1000147733 335
138 3300005545 Ga0070695_100007370 Ga0070695_1000073705 335
139 3300005546 Ga0070696_100008747 Ga0070696_1000087472 335
140 3300005547 Ga0070693_100042017 Ga0070693_1000420172 335
141 3300005549 Ga0070704_100004654 Ga0070704_1000046546 335
142 3300005549 Ga0070704_100171603 Ga0070704_1001716032 335
143 3300005578 Ga0068854_100021137 Ga0068854_1000211373 335
144 3300005615 Ga0070702_100001609 Ga0070702_1000016097 335
145 3300005617 Ga0068859_100036257 Ga0068859_1000362574 335
146 3300005618 Ga0068864_100131846 Ga0068864_1001318463 335
147 3300005718 Ga0068866_10010432 Ga0068866_100104321 335
148 3300005719 Ga0068861_100001283 Ga0068861_10000128310 335
149 3300005719 Ga0068861_100181854 Ga0068861_1001818541 335
150 3300005842 Ga0068858_100046150 Ga0068858_1000461504 335
151 3300005843 Ga0068860_100177099 Ga0068860_1001770992 335
152 3300005844 Ga0068862_100068995 Ga0068862_1000689951 335
153 3300006871 Ga0075434_100005437 Ga0075434_1000054377 335
154 3300006871 Ga0075434_100013465 Ga0075434_1000134655 335
155 3300006871 Ga0075434_100029213 Ga0075434_1000292132 335
156 3300006871 Ga0075434_100068296 Ga0075434_1000682963 335
157 3300006914 Ga0075436_100002423 Ga0075436_1000024235 335
158 3300006914 Ga0075436_100004258 Ga0075436_1000042582 335
159 3300006931 Ga0097620_100036256 Ga0097620_1000362563 335
160 3300007076 Ga0075435_100000051 Ga0075435_10000005154 335
161 3300007076 Ga0075435_100014753 Ga0075435_1000147536 335
162 3300007076 Ga0075435_100038024 Ga0075435_1000380242 335
163 3300009094 Ga0111539_10020787 Ga0111539_100207872 335
164 3300009094 Ga0111539_10033608 Ga0111539_100336084 335
165 3300009098 Ga0105245_10092531 Ga0105245_100925313 335
166 3300009147 Ga0114129_10083769 Ga0114129_100837693 335
167 3300009148 Ga0105243_10001923 Ga0105243_100019238 335
168 3300009176 Ga0105242_10249964 Ga0105242_102499642 335
169 3300009553 Ga0105249_10136801 Ga0105249_101368011 335
170 3300009553 Ga0105249_10544537 Ga0105249_105445371 335
171 3300013306 Ga0163162_10104477 Ga0163162_101044773 335
172 3300013308 Ga0157375_10022054 Ga0157375_100220544 335
173 3300014326 Ga0157380_10162493 Ga0157380_101624932 335
174 3300014968 Ga0157379_10040761 Ga0157379_100407613 335
175 3300025899 Ga0207642_10045338 Ga0207642_100453382 335
176 3300025907 Ga0207645_10002543 Ga0207645_100025432 335
177 3300025918 Ga0207662_10015612 Ga0207662_100156123 335
178 3300025922 Ga0207646_10124729 Ga0207646_101247292 335
179 3300025923 Ga0207681_10164938 Ga0207681_101649382 335
180 3300025923 Ga0207681_10384382 Ga0207681_103843821 335
181 3300025925 Ga0207650_10011321 Ga0207650_100113215 335
182 3300025925 Ga0207650_10374100 Ga0207650_103741002 335
183 3300025926 Ga0207659_10061346 Ga0207659_100613463 335
184 3300025931 Ga0207644_10171490 Ga0207644_101714903 335
185 3300025931 Ga0207644_10184198 Ga0207644_101841981 335
186 3300025933 Ga0207706_10095139 Ga0207706_100951392 335
187 3300025933 Ga0207706_10107276 Ga0207706_101072763 335
188 3300025933 Ga0207706_10374613 Ga0207706_103746131 335
189 3300025934 Ga0207686_10182536 Ga0207686_101825362 335
190 3300025935 Ga0207709_10109798 Ga0207709_101097981 335
191 3300025937 Ga0207669_10027763 Ga0207669_100277634 335
192 3300025941 Ga0207711_10279504 Ga0207711_102795042 335
193 3300025944 Ga0207661_10205202 Ga0207661_102052022 335
194 3300025960 Ga0207651_10385192 Ga0207651_103851921 335
195 3300025961 Ga0207712_10031889 Ga0207712_100318892 335
196 3300025986 Ga0207658_10217162 Ga0207658_102171621 335
197 3300026035 Ga0207703_10099139 Ga0207703_100991393 335
198 3300026075 Ga0207708_10031764 Ga0207708_100317642 335
199 3300026075 Ga0207708_10121631 Ga0207708_101216313 335
200 3300026095 Ga0207676_10336233 Ga0207676_103362331 335
201 3300026095 Ga0207676_10444431 Ga0207676_104444312 335
202 3300026118 Ga0207675_100006387 Ga0207675_1000063873 335
203 3300026118 Ga0207675_100013088 Ga0207675_1000130882 335
204 3300026118 Ga0207675_100253695 Ga0207675_1002536953 335
205 3300027907 Ga0207428_10059972 Ga0207428_100599722 335
206 3300027907 Ga0207428_10108495 Ga0207428_101084952 335
207 3300028380 Ga0268265_10025809 Ga0268265_100258093 335
208 3300028380 Ga0268265_10330613 Ga0268265_103306131 335
209 3300028381 Ga0268264_10276617 Ga0268264_102766171 335
210 3300034817 Ga0373948_0001051 Ga0373948_0001051_28_1035 335
211 3300034957 Ga0373938_0001928 Ga0373938_0001928_2083_3090 335
212 3300035090 Ga0373949_0001555 Ga0373949_0001555_1994_3001 335
213 3300035091 Ga0373951_0000928 Ga0373951_0000928_6177_7184 335
214 3300035092 Ga0373952_0000354 Ga0373952_0000354_1225_2232 335
215 3300035112 Ga0373932_0000157 Ga0373932_0000157_4104_5111 335
216 3300035114 Ga0373939_0000138 Ga0373939_0000138_15015_16022 335
217 3300035115 Ga0373941_0000086 Ga0373941_0000086_11647_12654 335
218 3300035207 Ga0373942_0007404 Ga0373942_0007404_181_1188 335
219 3300035241 Ga0373961_0001181 Ga0373961_0001181_3655_4662 335
220 3300035242 Ga0373962_0001745 Ga0373962_0001745_157_1164 335
221 3300035691 Ga0373931_0003364 Ga0373931_0003364_4967_5974 335
222 3300044694 Ga0466963_0071538 Ga0466963_0071538_640_1689 335
223 3300045051 Ga0451576_0010342 Ga0451576_0010342_1256_2263 335
224 3300045976 Ga0466967_0334490 Ga0466967_0334490_370_1386 335
225 3300049571 Ga0501034_0067894 Ga0501034_0067894_2367_3380 335
226 3300049578 Ga0501042_0171294 Ga0501042_0171294_444_1451 335
227 3300049581 Ga0501047_0093859 Ga0501047_0093859_1657_2670 335
228 3300049582 Ga0501048_0024464 Ga0501048_0024464_1045_2052 335
229 3300049823 Ga0501044_0002806 Ga0501044_0002806_5637_6650 335
230 3300050507 nmdc:mga05p37_56990_c1 nmdc:mga05p37_56990_c1_1684_2697 335
231 3300050511 nmdc:mga08y16_13267_c1 nmdc:mga08y16_13267_c1_2660_3667 335
232 3300050511 nmdc:mga08y16_134671_c1 nmdc:mga08y16_134671_c1_443_1450 335
233 3300050511 nmdc:mga08y16_149143_c1 nmdc:mga08y16_149143_c1_335_1342 335
234 3300050512 nmdc:mga0n895_196597_c1 nmdc:mga0n895_196597_c1_497_1504 335
235 3300050512 nmdc:mga0n895_4_c1 nmdc:mga0n895_4_c1_7885_8892 335
236 3300050513 nmdc:mga0rr50_1728_c1 nmdc:mga0rr50_1728_c1_6778_7785 335
237 3300050513 nmdc:mga0rr50_4_c1 nmdc:mga0rr50_4_c1_176207_177214 335
238 3300050513 nmdc:mga0rr50_99014_c1 nmdc:mga0rr50_99014_c1_936_1943 335
239 3300050514 nmdc:mga08x19_3412_c1 nmdc:mga08x19_3412_c1_6466_7473 335
240 3300050514 nmdc:mga08x19_60435_c1 nmdc:mga08x19_60435_c1_1378_2385 335
241 3300060353 Ga0501082_0058973 Ga0501082_0058973_1907_2914 335

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00867

XPG_I

XPG I-region

175

268

0.92

PF00752

XPG_N

XPG N-terminal domain

31

133

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1rxv-assembly2.cif.gz_B crystal structure of a. fulgidus fen-1 bound to dna 0.9576 4 328
1rxw-assembly1.cif.gz_A crystal structure of a. fulgidus fen-1 bound to dna 0.9551 5 328
1rxv-assembly2.cif.gz_B crystal structure of a. fulgidus fen-1 bound to dna 0.9515 4 328
2izo-assembly1.cif.gz_A structure of an archaeal pcna1-pcna2-fen1 complex 0.95 10 328
1rxw-assembly1.cif.gz_A crystal structure of a. fulgidus fen-1 bound to dna 0.9399 5 328
ID Description Score Start End Superfamily
af_P39750_1_221_3.40.50.1010 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;5'-nuclease 0.9075 11 224 3.40.50.1010
3oryA02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.8475 223 285 1.10.150.20
1rxvB02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.8415 223 285 1.10.150.20
af_Q12086_212_283_1.10.150.20 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.836 223 287 1.10.150.20
1rxwA02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.8343 223 270 1.10.150.20
ID Description Score Start End GO Terms
AF-A0A7J2M136-F1-model_v4 Flap structure-specific endonuclease 0.9857 1 182 GO:0006281
GO:0017108
AF-A0A2V8M0A2-F1-model_v4 Flap endonuclease-1 0.9818 1 329 GO:0003677
GO:0006260
GO:0006281
GO:0008409
GO:0017108
GO:0046872
AF-A0A7C2L8T6-F1-model_v4 Flap endonuclease 1 (FEN-1) (EC 3.1.-.-) (Flap structure-specific endonuclease 1) 0.9808 1 328 GO:0000287
GO:0003677
GO:0006281
GO:0008409
GO:0017108
GO:0043137
AF-A0A2V8HCX1-F1-model_v4 Flap structure-specific endonuclease 0.9802 1 127 GO:0017108
AF-A0A662H6V5-F1-model_v4 Flap structure-specific endonuclease 0.9785 1 161 GO:0017108

Feature Viewer

pLDDT pTM Quality
90.74 0.88 High
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Predicted Structure (AlphaFold2)

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