F354115

General Info

Members Datasets Scaffolds Average Seq Length
241 196 189 280

Family's Representative Sequence

Representative Sequence 3300049569|Ga0501032_0012290|Ga0501032_0012290_2145_3056
Length 303
Sequence VFAVGVARSGRGEARSGAVAERETAGRLVELLSDHDGTLADTWVGTVARTLKGRVTRAELSAELNELFTAITEALHGGTLDARSENFSEVRALLAELSRNRARQGFTPSETAVSVFALKEVLEPTLTGGESADVAAYLALSRVLDALGLFTIETYARTREEIITTQAEQLLELSTPVVKLWDGVVAVPLVGTLDSARTQVVMEKLLQALVDTESDQAIIDITGVPAVDTQVAQHLLKTIVAARLMGAECTVSGIRPQIAQTIVALGIEFGDITTKATLADALRHAMARINAGREAAGTRGAAR

Samples

Sample ID Description Type Environment
1 2501939600 Micromonospora sp. L5 Isolate Unclassified
2 2508501039 Frankia saprophytica CN3 Isolate Nodule
3 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
4 2626541554 Frankia sp. AvcI.1 Isolate Nodule
5 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
6 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
7 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
8 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
9 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
10 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
11 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
12 2855683550 Micromonospora sp. RP3T Isolate Unclassified
13 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
14 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
15 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
16 2858868258 Micromonospora sp. MH33 Isolate Unclassified
17 2858882152 Micromonospora noduli MED15 Isolate Nodule
18 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
19 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
20 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
21 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
22 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
23 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
24 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
25 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
26 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
27 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
28 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
29 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
30 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
31 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
32 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
33 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
34 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
35 2902582711 Micromonospora sp. AP08 Isolate Unclassified
36 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
37 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
38 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
39 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
40 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
41 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
42 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
43 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
44 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
45 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
46 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
47 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
48 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
49 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
50 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
51 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
52 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
53 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
54 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
55 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
56 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
57 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
58 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
59 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
60 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
61 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
62 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
63 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
64 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
65 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
66 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
67 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
68 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
69 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
70 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
71 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
72 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
73 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
74 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
75 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
76 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
77 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
78 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
79 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
80 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
81 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
82 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
83 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
84 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
85 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
86 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
87 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
88 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
89 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
90 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
91 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
92 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
93 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
116 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
120 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
121 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
122 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
123 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
124 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
125 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
126 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
127 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
128 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
129 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
130 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
131 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
132 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
133 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
134 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
135 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
136 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
137 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
138 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
139 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
140 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
141 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
142 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
143 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
144 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
145 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
146 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
147 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
148 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
149 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
150 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
151 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
152 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
153 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
154 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
155 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
156 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
157 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
158 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
159 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
160 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
161 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
162 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
163 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
164 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
165 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
166 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
167 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
168 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
169 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
170 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
171 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
172 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
173 3300049778 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_A_5_control Metagenome Rhizosphere
174 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
175 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
176 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
177 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
178 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
179 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
180 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
181 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
182 3300053159 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 endosphere Metagenome Endosphere
183 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
184 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
185 649633069 Micromonospora sp. L5 Isolate Unclassified
186 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
187 8002775197 Frankia nepalensis CN7 Isolate Nodule
188 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
189 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
190 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
191 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
192 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere
193 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
194 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
195 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
196 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 75.1
Metatranscriptomes 3.32
Isolates 21.58

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.24
Nodule 3.73
Rhizoplane 1.66
Rhizosphere 76.76
Stem 0
Stem Tuber 0
Unclassified 16.6

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10024545 3300003203 Bacteria 2360
2 JGI25406J46586_10031670 3300003203 Bacteria 1975
3 Ga0070658_10001868 3300005327 Bacteria 17746
4 Ga0070683_100000685 3300005329 Bacteria 24512
5 Ga0070683_100020241 3300005329 Bacteria 5920
6 Ga0070660_100296455 3300005339 Bacteria 1325
7 Ga0070661_100015040 3300005344 Bacteria 5459
8 Ga0070692_10072736 3300005345 Bacteria 1835
9 Ga0070668_100000936 3300005347 Bacteria 20339
10 Ga0070668_100030190 3300005347 Bacteria 4121
11 Ga0070659_100025803 3300005366 Bacteria 4519
12 Ga0070713_100213300 3300005436 Bacteria 1749
13 Ga0070663_100067307 3300005455 Bacteria 2597
14 Ga0070678_100055149 3300005456 Bacteria 2900
15 Ga0070681_10126953 3300005458 Bacteria 2483
16 Ga0070679_100068479 3300005530 Bacteria 3540
17 Ga0070684_100003854 3300005535 Bacteria 11345
18 Ga0070684_100004937 3300005535 Bacteria 10179
19 Ga0070684_100069293 3300005535 Bacteria 3102
20 Ga0070665_100041959 3300005548 Bacteria 4599
21 Ga0068855_100010603 3300005563 Bacteria 11109
22 Ga0070664_100239008 3300005564 Bacteria 1630
23 Ga0068857_100128674 3300005577 Bacteria 2283
24 Ga0068857_100147575 3300005577 Bacteria 2129
25 Ga0068856_100310138 3300005614 Bacteria 1595
26 Ga0068856_100480126 3300005614 Bacteria 1264
27 Ga0068852_100002599 3300005616 Bacteria 12471
28 Ga0068864_100261108 3300005618 Bacteria 1611
29 Ga0068870_10390759 3300005840 Bacteria 903
30 Ga0068858_100015114 3300005842 Bacteria 7260
31 Ga0068860_100212542 3300005843 Bacteria 1876
32 Ga0068862_100272367 3300005844 Bacteria 1549
33 Ga0081540_1002033 3300005983 Bacteria 16870
34 Ga0081540_1025620 3300005983 Bacteria 3388
35 Ga0081540_1101840 3300005983 Bacteria 1235
36 Ga0081539_10001271 3300005985 Bacteria 44503
37 Ga0081539_10002480 3300005985 Bacteria 25953
38 Ga0081539_10003880 3300005985 Bacteria 17462
39 Ga0081539_10024215 3300005985 Bacteria 3947
40 Ga0070717_10314786 3300006028 Bacteria 1394
41 Ga0068871_100383545 3300006358 Bacteria 1249
42 Ga0075428_100002213 3300006844 Bacteria 21066
43 Ga0075428_100217059 3300006844 Bacteria 2066
44 Ga0075430_100000091 3300006846 Bacteria 52409
45 Ga0075431_100049976 3300006847 Bacteria 4311
46 Ga0075431_100082469 3300006847 Bacteria 3319
47 Ga0075429_100001463 3300006880 Bacteria 19406
48 Ga0105240_10025821 3300009093 Bacteria 7714
49 Ga0111539_10130431 3300009094 Bacteria 2943
50 Ga0114129_10011782 3300009147 Bacteria 12442
51 Ga0114129_10131418 3300009147 Bacteria 3438
52 Ga0114129_10250278 3300009147 Bacteria 2379
53 Ga0114129_10301852 3300009147 Bacteria 2134
54 Ga0105241_10002124 3300009174 Bacteria 14987
55 Ga0105241_10569341 3300009174 Bacteria 1019
56 Ga0105237_10041641 3300009545 Bacteria 4632
57 Ga0105238_10018236 3300009551 Bacteria 7139
58 Ga0105239_10128529 3300010375 Bacteria 2817
59 Ga0157369_10036739 3300013105 Bacteria 5366
60 Ga0157369_10295042 3300013105 Bacteria 1687
61 Ga0157374_10179181 3300013296 Bacteria 2069
62 Ga0157378_10229632 3300013297 Bacteria 1768
63 Ga0163162_10372840 3300013306 Bacteria 1560
64 Ga0157372_10157129 3300013307 Bacteria 2627
65 Ga0163163_10162859 3300014325 Bacteria 2276
66 Ga0163163_10598204 3300014325 Bacteria 1166
67 Ga0197907_10781823 3300020069 Bacteria 1000
68 Ga0197907_11101578 3300020069 Bacteria 1694
69 Ga0206356_11502305 3300020070 Bacteria 2481
70 Ga0206351_10332341 3300020077 Bacteria 932
71 Ga0206352_11082911 3300020078 Bacteria 1345
72 Ga0206354_11117902 3300020081 Bacteria 4011
73 Ga0224712_10013404 3300022467 Bacteria 2609
74 Ga0224712_10060851 3300022467 Bacteria 1504
75 Ga0207647_10003964 3300025904 Bacteria 11048
76 Ga0207705_10004789 3300025909 Bacteria 10191
77 Ga0207654_10013421 3300025911 Bacteria 4215
78 Ga0207707_10090531 3300025912 Bacteria 2674
79 Ga0207695_10007586 3300025913 Bacteria 13756
80 Ga0207671_10001734 3300025914 Bacteria 24557
81 Ga0207657_10116140 3300025919 Bacteria 2205
82 Ga0207649_10055702 3300025920 Bacteria 2466
83 Ga0207652_10082723 3300025921 Bacteria 2809
84 Ga0207694_10005933 3300025924 Bacteria 9368
85 Ga0207664_10248387 3300025929 Bacteria 1552
86 Ga0207709_10112381 3300025935 Bacteria 1824
87 Ga0207661_10002915 3300025944 Bacteria 11821
88 Ga0207661_10010866 3300025944 Bacteria 6570
89 Ga0207679_10018197 3300025945 Bacteria 4703
90 Ga0207712_10173282 3300025961 Bacteria 1688
91 Ga0207668_10001644 3300025972 Bacteria 13055
92 Ga0207668_10031750 3300025972 Bacteria 3483
93 Ga0207678_10160951 3300026067 Bacteria 1917
94 Ga0207702_10087807 3300026078 Bacteria 2716
95 Ga0207676_10437033 3300026095 Bacteria 1231
96 Ga0207674_10067976 3300026116 Bacteria 3586
97 Ga0207674_10566982 3300026116 Bacteria 1097
98 Ga0207683_10121605 3300026121 Bacteria 2344
99 Ga0207698_10020775 3300026142 Bacteria 4526
100 Ga0207428_10113677 3300027907 Bacteria 2081
101 Ga0268266_10118153 3300028379 Bacteria 2357
102 Ga0268266_10127315 3300028379 Bacteria 2274
103 Ga0268266_10300022 3300028379 Bacteria 1498
104 Ga0268265_10025618 3300028380 Bacteria 4190
105 Ga0268265_10278581 3300028380 Bacteria 1495
106 Ga0268264_10065455 3300028381 Bacteria 3062
107 Ga0307515_10000038 3300028794 Bacteria 331376
108 Ga0307515_10042640 3300028794 Bacteria 7089
109 Ga0307509_10025678 3300031507 Bacteria 6577
110 Ga0307516_10000553 3300031730 Bacteria 50262
111 Ga0307516_10099515 3300031730 Bacteria 2724
112 Ga0307406_10091239 3300031901 Bacteria 2052
113 Ga0307406_10472168 3300031901 Bacteria 1011
114 Ga0307406_10486089 3300031901 Bacteria 998
115 Ga0307409_100010729 3300031995 Bacteria 5721
116 Ga0307409_100086798 3300031995 Bacteria 2548
117 Ga0307416_100246594 3300032002 Bacteria 1735
118 Ga0307415_100219144 3300032126 Bacteria 1524
119 Ga0373951_0000125 3300035091 Bacteria 28828
120 Ga0373953_0075216 3300035117 Bacteria 1398
121 Ga0373935_0015006 3300035692 Bacteria 4678
122 Ga0451853_3748319 3300041512 Bacteria 2546
123 Ga0466972_0000700 3300044658 Bacteria 16015
124 Ga0466965_0001836 3300044683 Bacteria 8834
125 Ga0466966_0205161 3300044684 Bacteria 1192
126 Ga0466970_0010370 3300044765 Bacteria 4730
127 Ga0466957_0139504 3300044842 Bacteria 1561
128 Ga0466960_0000433 3300044901 Bacteria 14318
129 Ga0466967_0234354 3300045976 Bacteria 1749
130 Ga0495603_0097669 3300046455 Bacteria 1715
131 Ga0495638_0128750 3300046460 Bacteria 1489
132 Ga0495662_0102140 3300046476 Bacteria 1403
133 Ga0495585_0016274 3300046492 Bacteria 4309
134 Ga0495606_0001394 3300046507 Bacteria 32668
135 Ga0495628_0045438 3300046516 Bacteria 3492
136 Ga0495640_0001568 3300046533 Bacteria 18001
137 Ga0495668_0001004 3300046616 Bacteria 30347
138 Ga0495634_0038296 3300046642 Bacteria 3270
139 Ga0495625_0000363 3300046660 Bacteria 69433
140 Ga0495588_0071567 3300046674 Bacteria 1803
141 Ga0495613_0009222 3300046689 Bacteria 7317
142 Ga0495604_0021018 3300047317 Bacteria 5207
143 Ga0495676_0011755 3300047321 Bacteria 7896
144 Ga0495683_0175326 3300047323 Bacteria 983
145 Ga0495685_055555 3300047447 Bacteria 1339
146 Ga0495686_0128275 3300047472 Bacteria 1506
147 Ga0495626_0000052 3300048091 Bacteria 156421
148 Ga0496108_0000035 3300048911 Bacteria 154937
149 Ga0496108_0210856 3300048911 Bacteria 1686
150 Ga0496111_0024129 3300048914 Bacteria 4278
151 Ga0496112_0055970 3300048915 Bacteria 3881
152 Ga0496120_0112097 3300048923 Bacteria 1423
153 Ga0496124_0183452 3300048927 Bacteria 1608
154 Ga0496126_0121564 3300048929 Bacteria 2264
155 Ga0496126_0123655 3300048929 Bacteria 2241
156 Ga0501032_0012290 3300049569 Bacteria 6125
157 Ga0501033_0014081 3300049570 Bacteria 6081
158 Ga0501034_0018108 3300049571 Bacteria 7229
159 Ga0501034_0141473 3300049571 Bacteria 2385
160 Ga0501036_0005157 3300049572 Bacteria 10561
161 Ga0501037_0004374 3300049573 Bacteria 10257
162 Ga0501038_0003804 3300049574 Bacteria 14045
163 Ga0501039_0010961 3300049575 Bacteria 6909
164 Ga0501043_0106119 3300049579 Bacteria 2206
165 Ga0501043_0145871 3300049579 Bacteria 1853
166 Ga0501047_0007291 3300049581 Bacteria 10394
167 Ga0501047_0027750 3300049581 Bacteria 5454
168 Ga0501047_0091691 3300049581 Bacteria 2917
169 Ga0501068_0106082 3300049584 Bacteria 1744
170 Ga0501070_0008181 3300049586 Bacteria 8844
171 Ga0501235_021257 3300049669 Bacteria 1442
172 Ga0501282_002463 3300049778 Bacteria 2009
173 Ga0501044_0007912 3300049823 Bacteria 11689
174 Ga0501044_0020899 3300049823 Bacteria 6988
175 Ga0501044_0045370 3300049823 Bacteria 4553
176 Ga0501044_0105282 3300049823 Bacteria 2834
177 Ga0501045_0068708 3300049824 Bacteria 2603
178 nmdc:mga05p37_143408_c1 3300050507 Bacteria 2925
179 nmdc:mga05p37_70709_c1 3300050507 Bacteria 4293
180 nmdc:mga0qj67_692_c1 3300050509 Bacteria 22986
181 nmdc:mga06r32_23060_c1 3300050510 Bacteria 5757
182 nmdc:mga06r32_6652_c1 3300050510 Bacteria 10388
183 nmdc:mga08y16_85861_c1 3300050511 Bacteria 3280
184 Ga0495619_0079095 3300053085 Bacteria 2211
185 Ga0500644_0035411 3300053088 Bacteria 1617
186 Ga0500644_0074101 3300053088 Bacteria 1235
187 Ga0500630_074801 3300053159 Bacteria 1596
188 Ga0501084_0154497 3300054114 Bacteria 1935
189 Ga0466962_0131875 3300061719 Bacteria 1208

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300014325 Ga0163163_10598204 Ga0163163_105982041 219
2 3300046455 Ga0495603_0097669 Ga0495603_0097669_296_991 224
3 3300046476 Ga0495662_0102140 Ga0495662_0102140_307_1002 224
4 3300046516 Ga0495628_0045438 Ga0495628_0045438_269_964 224
5 3300046533 Ga0495640_0001568 Ga0495640_0001568_123_818 224
6 3300046642 Ga0495634_0038296 Ga0495634_0038296_1550_2245 224
7 3300046689 Ga0495613_0009222 Ga0495613_0009222_6120_6815 224
8 3300047321 Ga0495676_0011755 Ga0495676_0011755_2223_2918 224
9 3300045976 Ga0466967_0234354 Ga0466967_0234354_246_950 229
10 3300025961 Ga0207712_10173282 Ga0207712_101732822 233
11 3300031995 Ga0307409_100086798 Ga0307409_1000867985 238
12 3300031901 Ga0307406_10486089 Ga0307406_104860892 240
13 3300047472 Ga0495686_0128275 Ga0495686_0128275_695_1438 240
14 3300009174 Ga0105241_10569341 Ga0105241_105693411 246
15 3300046460 Ga0495638_0128750 Ga0495638_0128750_613_1464 249
16 3300053088 Ga0500644_0035411 Ga0500644_0035411_463_1314 249
17 3300005614 Ga0068856_100480126 Ga0068856_1004801262 254
18 3300005985 Ga0081539_10001271 Ga0081539_1000127131 260
19 3300014325 Ga0163163_10162859 Ga0163163_101628594 261
20 3300028380 Ga0268265_10025618 Ga0268265_100256184 268
21 3300005347 Ga0070668_100000936 Ga0070668_10000093613 269
22 3300025972 Ga0207668_10001644 Ga0207668_1000164410 269
23 iso_pu_bacteria 3006321560 3006328336 270
24 3300048923 Ga0496120_0112097 Ga0496120_0112097_513_1346 271
25 iso_pu_bacteria 2508501039 2508678150 271
26 iso_pu_bacteria 2884994152 2884995867 271
27 iso_pu_bacteria 8002775197 8002775217 271
28 iso_pu_bacteria 2626541554 2626635971 272
29 iso_pu_bacteria 2875391855 2875396279 272
30 iso_pu_bacteria 2891326441 2891329319 272
31 3300025935 Ga0207709_10112381 Ga0207709_101123813 273
32 3300048911 Ga0496108_0210856 Ga0496108_0210856_188_1024 273
33 iso_pu_bacteria 2802429296 2804846845 273
34 iso_pu_bacteria 8025413630 8025417910 273
35 3300005347 Ga0070668_100030190 Ga0070668_1000301904 274
36 3300005842 Ga0068858_100015114 Ga0068858_1000151148 274
37 3300005843 Ga0068860_100212542 Ga0068860_1002125422 274
38 3300005844 Ga0068862_100272367 Ga0068862_1002723672 274
39 3300006358 Ga0068871_100383545 Ga0068871_1003835451 274
40 3300013297 Ga0157378_10229632 Ga0157378_102296321 274
41 3300025972 Ga0207668_10031750 Ga0207668_100317504 274
42 3300028379 Ga0268266_10118153 Ga0268266_101181534 274
43 3300028380 Ga0268265_10278581 Ga0268265_102785812 274
44 3300028381 Ga0268264_10065455 Ga0268264_100654553 274
45 3300031507 Ga0307509_10025678 Ga0307509_100256784 274
46 3300035692 Ga0373935_0015006 Ga0373935_0015006_1560_2384 274
47 3300046492 Ga0495585_0016274 Ga0495585_0016274_2525_3370 274
48 3300047317 Ga0495604_0021018 Ga0495604_0021018_2355_3200 274
49 3300048914 Ga0496111_0024129 Ga0496111_0024129_617_1465 274
50 3300048927 Ga0496124_0183452 Ga0496124_0183452_535_1383 274
51 3300048929 Ga0496126_0121564 Ga0496126_0121564_333_1181 274
52 3300049581 Ga0501047_0091691 Ga0501047_0091691_880_1725 274
53 3300049823 Ga0501044_0105282 Ga0501044_0105282_487_1332 274
54 iso_pu_bacteria 2858902515 2858904641 274
55 3300005455 Ga0070663_100067307 Ga0070663_1000673072 275
56 3300005456 Ga0070678_100055149 Ga0070678_1000551494 275
57 3300005548 Ga0070665_100041959 Ga0070665_1000419594 275
58 3300005614 Ga0068856_100310138 Ga0068856_1003101382 275
59 3300005840 Ga0068870_10390759 Ga0068870_103907591 275
60 3300006028 Ga0070717_10314786 Ga0070717_103147862 275
61 3300009094 Ga0111539_10130431 Ga0111539_101304314 275
62 3300025929 Ga0207664_10248387 Ga0207664_102483872 275
63 3300026067 Ga0207678_10160951 Ga0207678_101609512 275
64 3300026078 Ga0207702_10087807 Ga0207702_100878072 275
65 3300026121 Ga0207683_10121605 Ga0207683_101216052 275
66 3300027907 Ga0207428_10113677 Ga0207428_101136772 275
67 3300028379 Ga0268266_10300022 Ga0268266_103000222 275
68 3300050511 nmdc:mga08y16_85861_c1 nmdc:mga08y16_85861_c1_1730_2575 275
69 iso_pu_bacteria 2831935698 2831940758 275
70 3300005985 Ga0081539_10024215 Ga0081539_100242154 276
71 3300020069 Ga0197907_10781823 Ga0197907_107818231 276
72 3300025914 Ga0207671_10001734 Ga0207671_100017345 276
73 3300031901 Ga0307406_10472168 Ga0307406_104721681 276
74 3300044684 Ga0466966_0205161 Ga0466966_0205161_74_904 276
75 3300046674 Ga0495588_0071567 Ga0495588_0071567_939_1790 276
76 3300049571 Ga0501034_0018108 Ga0501034_0018108_2673_3524 276
77 3300049579 Ga0501043_0145871 Ga0501043_0145871_102_953 276
78 3300049581 Ga0501047_0007291 Ga0501047_0007291_5029_5880 276
79 3300049669 Ga0501235_021257 Ga0501235_021257_325_1176 276
80 3300049778 Ga0501282_002463 Ga0501282_002463_393_1244 276
81 3300049823 Ga0501044_0020899 Ga0501044_0020899_2412_3263 276
82 iso_pu_bacteria 2675903059 2676480539 276
83 iso_pu_bacteria 8001781756 8001787561 276
84 3300005327 Ga0070658_10001868 Ga0070658_1000186814 277
85 3300005329 Ga0070683_100020241 Ga0070683_1000202416 277
86 3300005339 Ga0070660_100296455 Ga0070660_1002964552 277
87 3300005344 Ga0070661_100015040 Ga0070661_1000150404 277
88 3300005345 Ga0070692_10072736 Ga0070692_100727362 277
89 3300005366 Ga0070659_100025803 Ga0070659_1000258034 277
90 3300005458 Ga0070681_10126953 Ga0070681_101269532 277
91 3300005530 Ga0070679_100068479 Ga0070679_1000684795 277
92 3300005535 Ga0070684_100003854 Ga0070684_10000385414 277
93 3300005535 Ga0070684_100069293 Ga0070684_1000692933 277
94 3300005563 Ga0068855_100010603 Ga0068855_1000106039 277
95 3300005577 Ga0068857_100128674 Ga0068857_1001286744 277
96 3300005577 Ga0068857_100147575 Ga0068857_1001475753 277
97 3300005616 Ga0068852_100002599 Ga0068852_1000025999 277
98 3300005618 Ga0068864_100261108 Ga0068864_1002611082 277
99 3300005983 Ga0081540_1025620 Ga0081540_10256204 277
100 3300006844 Ga0075428_100217059 Ga0075428_1002170592 277
101 3300006880 Ga0075429_100001463 Ga0075429_10000146317 277
102 3300009147 Ga0114129_10301852 Ga0114129_103018522 277
103 3300013105 Ga0157369_10036739 Ga0157369_100367395 277
104 3300013105 Ga0157369_10295042 Ga0157369_102950421 277
105 3300013306 Ga0163162_10372840 Ga0163162_103728402 277
106 3300013307 Ga0157372_10157129 Ga0157372_101571294 277
107 3300020069 Ga0197907_11101578 Ga0197907_111015782 277
108 3300020070 Ga0206356_11502305 Ga0206356_115023051 277
109 3300020077 Ga0206351_10332341 Ga0206351_103323411 277
110 3300020078 Ga0206352_11082911 Ga0206352_110829113 277
111 3300020081 Ga0206354_11117902 Ga0206354_111179024 277
112 3300022467 Ga0224712_10013404 Ga0224712_100134044 277
113 3300025904 Ga0207647_10003964 Ga0207647_100039646 277
114 3300025909 Ga0207705_10004789 Ga0207705_100047897 277
115 3300025911 Ga0207654_10013421 Ga0207654_100134212 277
116 3300025912 Ga0207707_10090531 Ga0207707_100905312 277
117 3300025913 Ga0207695_10007586 Ga0207695_100075865 277
118 3300025919 Ga0207657_10116140 Ga0207657_101161403 277
119 3300025920 Ga0207649_10055702 Ga0207649_100557023 277
120 3300025921 Ga0207652_10082723 Ga0207652_100827233 277
121 3300025924 Ga0207694_10005933 Ga0207694_100059339 277
122 3300025944 Ga0207661_10002915 Ga0207661_1000291510 277
123 3300026095 Ga0207676_10437033 Ga0207676_104370332 277
124 3300026116 Ga0207674_10067976 Ga0207674_100679761 277
125 3300026116 Ga0207674_10566982 Ga0207674_105669821 277
126 3300026142 Ga0207698_10020775 Ga0207698_100207753 277
127 3300028379 Ga0268266_10127315 Ga0268266_101273153 277
128 3300044658 Ga0466972_0000700 Ga0466972_0000700_13905_14750 277
129 3300044683 Ga0466965_0001836 Ga0466965_0001836_6826_7671 277
130 3300044765 Ga0466970_0010370 Ga0466970_0010370_1708_2553 277
131 3300044842 Ga0466957_0139504 Ga0466957_0139504_339_1184 277
132 3300044901 Ga0466960_0000433 Ga0466960_0000433_5570_6415 277
133 3300048915 Ga0496112_0055970 Ga0496112_0055970_594_1442 277
134 3300061719 Ga0466962_0131875 Ga0466962_0131875_77_922 277
135 iso_pu_bacteria 2501939600 2501942442 277
136 iso_pu_bacteria 2622736626 2623586077 277
137 iso_pu_bacteria 2772190715 2772641270 277
138 iso_pu_bacteria 2832004796 2832009617 277
139 iso_pu_bacteria 2855670206 2855671715 277
140 iso_pu_bacteria 2855676851 2855683186 277
141 iso_pu_bacteria 2855683550 2855684933 277
142 iso_pu_bacteria 2856858025 2856859974 277
143 iso_pu_bacteria 2857288857 2857294289 277
144 iso_pu_bacteria 2858848962 2858852361 277
145 iso_pu_bacteria 2858868258 2858873655 277
146 iso_pu_bacteria 2858882152 2858887890 277
147 iso_pu_bacteria 2858888857 2858895137 277
148 iso_pu_bacteria 2858895516 2858898874 277
149 iso_pu_bacteria 2866065130 2866065521 277
150 iso_pu_bacteria 2867302475 2867304387 277
151 iso_pu_bacteria 2867312974 2867313716 277
152 iso_pu_bacteria 2867319477 2867322460 277
153 iso_pu_bacteria 2867507094 2867508707 277
154 iso_pu_bacteria 2869048445 2869054476 277
155 iso_pu_bacteria 2869061728 2869068019 277
156 iso_pu_bacteria 2869068681 2869071091 277
157 iso_pu_bacteria 2880489317 2880494181 277
158 iso_pu_bacteria 2880495981 2880498145 277
159 iso_pu_bacteria 2902582711 2902587562 277
160 iso_pu_bacteria 2929219909 2929220188 277
161 iso_pu_bacteria 2929226422 2929226722 277
162 iso_pu_bacteria 2996221748 2996226158 277
163 iso_pu_bacteria 649633069 649810457 277
164 iso_pu_bacteria 8003830390 8003832560 277
165 iso_pu_bacteria 8003870546 8003875397 277
166 iso_pu_bacteria 8054472261 8054476498 277
167 iso_pu_bacteria 8054704163 8054705462 277
168 iso_pu_bacteria 8054727385 8054728075 277
169 iso_pu_bacteria 8054734606 8054740827 277
170 iso_pu_bacteria 8055412473 8055413287 277
171 3300005436 Ga0070713_100213300 Ga0070713_1002133002 278
172 3300005983 Ga0081540_1002033 Ga0081540_10020333 278
173 3300006847 Ga0075431_100049976 Ga0075431_1000499763 278
174 3300009093 Ga0105240_10025821 Ga0105240_100258219 278
175 3300009147 Ga0114129_10131418 Ga0114129_101314182 278
176 3300009174 Ga0105241_10002124 Ga0105241_1000212411 278
177 3300009545 Ga0105237_10041641 Ga0105237_100416411 278
178 3300009551 Ga0105238_10018236 Ga0105238_100182364 278
179 3300010375 Ga0105239_10128529 Ga0105239_101285294 278
180 3300013296 Ga0157374_10179181 Ga0157374_101791813 278
181 3300032126 Ga0307415_100219144 Ga0307415_1002191443 278
182 3300048911 Ga0496108_0000035 Ga0496108_0000035_15990_16838 278
183 3300049571 Ga0501034_0141473 Ga0501034_0141473_683_1540 278
184 3300049575 Ga0501039_0010961 Ga0501039_0010961_6037_6894 278
185 3300049584 Ga0501068_0106082 Ga0501068_0106082_843_1700 278
186 3300049823 Ga0501044_0007912 Ga0501044_0007912_10063_10920 278
187 3300050507 nmdc:mga05p37_143408_c1 nmdc:mga05p37_143408_c1_341_1195 278
188 3300050510 nmdc:mga06r32_23060_c1 nmdc:mga06r32_23060_c1_1896_2750 278
189 iso_pu_bacteria 2966598605 2966604862 278
190 iso_pu_bacteria 8003856774 8003858143 278
191 3300009147 Ga0114129_10011782 Ga0114129_1001178210 279
192 3300022467 Ga0224712_10060851 Ga0224712_100608512 279
193 3300031901 Ga0307406_10091239 Ga0307406_100912393 279
194 3300031995 Ga0307409_100010729 Ga0307409_1000107292 279
195 3300032002 Ga0307416_100246594 Ga0307416_1002465943 279
196 3300047447 Ga0495685_055555 Ga0495685_055555_70_942 279
197 3300049569 Ga0501032_0012290 Ga0501032_0012290_2145_3056 279
198 3300049570 Ga0501033_0014081 Ga0501033_0014081_3837_4748 279
199 3300049572 Ga0501036_0005157 Ga0501036_0005157_5814_6725 279
200 3300049573 Ga0501037_0004374 Ga0501037_0004374_8504_9415 279
201 3300049574 Ga0501038_0003804 Ga0501038_0003804_6061_6972 279
202 3300049579 Ga0501043_0106119 Ga0501043_0106119_409_1320 279
203 3300049581 Ga0501047_0027750 Ga0501047_0027750_1714_2625 279
204 3300049586 Ga0501070_0008181 Ga0501070_0008181_3382_4293 279
205 3300049823 Ga0501044_0045370 Ga0501044_0045370_813_1724 279
206 3300049824 Ga0501045_0068708 Ga0501045_0068708_258_1169 279
207 3300050507 nmdc:mga05p37_70709_c1 nmdc:mga05p37_70709_c1_491_1351 279
208 iso_pu_bacteria 2887478801 2887485147 279
209 3300005329 Ga0070683_100000685 Ga0070683_1000006858 280
210 3300005535 Ga0070684_100004937 Ga0070684_1000049379 280
211 3300005564 Ga0070664_100239008 Ga0070664_1002390082 280
212 3300005983 Ga0081540_1101840 Ga0081540_11018401 280
213 3300005985 Ga0081539_10003880 Ga0081539_1000388011 280
214 3300006846 Ga0075430_100000091 Ga0075430_1000000919 280
215 3300009147 Ga0114129_10250278 Ga0114129_102502781 280
216 3300025944 Ga0207661_10010866 Ga0207661_100108664 280
217 3300025945 Ga0207679_10018197 Ga0207679_100181975 280
218 3300035117 Ga0373953_0075216 Ga0373953_0075216_22_879 280
219 3300041512 Ga0451853_3748319 Ga0451853_3748319_1398_2273 280
220 3300046507 Ga0495606_0001394 Ga0495606_0001394_23508_24371 280
221 3300046616 Ga0495668_0001004 Ga0495668_0001004_22231_23094 280
222 3300046660 Ga0495625_0000363 Ga0495625_0000363_13809_14672 280
223 3300047323 Ga0495683_0175326 Ga0495683_0175326_41_904 280
224 3300048091 Ga0495626_0000052 Ga0495626_0000052_79746_80609 280
225 3300048929 Ga0496126_0123655 Ga0496126_0123655_503_1384 280
226 3300050509 nmdc:mga0qj67_692_c1 nmdc:mga0qj67_692_c1_6670_7533 280
227 3300053085 Ga0495619_0079095 Ga0495619_0079095_1080_1937 280
228 3300054114 Ga0501084_0154497 Ga0501084_0154497_806_1678 280
229 3300003203 JGI25406J46586_10031670 JGI25406J46586_100316703 281
230 3300031730 Ga0307516_10099515 Ga0307516_100995152 282
231 3300053159 Ga0500630_074801 Ga0500630_074801_317_1165 282
232 3300006844 Ga0075428_100002213 Ga0075428_1000022134 283
233 3300006847 Ga0075431_100082469 Ga0075431_1000824694 283
234 3300028794 Ga0307515_10000038 Ga0307515_10000038225 283
235 3300028794 Ga0307515_10042640 Ga0307515_100426408 283
236 3300031730 Ga0307516_10000553 Ga0307516_1000055329 283
237 3300035091 Ga0373951_0000125 Ga0373951_0000125_15623_16492 283
238 3300050510 nmdc:mga06r32_6652_c1 nmdc:mga06r32_6652_c1_4923_5795 283
239 3300053088 Ga0500644_0074101 Ga0500644_0074101_202_1071 283
240 3300003203 JGI25406J46586_10024545 JGI25406J46586_100245453 284
241 3300005985 Ga0081539_10002480 Ga0081539_1000248018 284

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14361

RsbRD_N

RsbT co-antagonist protein rsbRD N-terminal domain

28

127

0.96

PF01740

STAS

STAS domain

175

281

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
6jhk-assembly1.cif.gz_A crystal structure of bacillus subtilis rsbs 0.9065 161 275
6jhk-assembly1.cif.gz_A crystal structure of bacillus subtilis rsbs 0.8849 161 275
3zxn-assembly1.cif.gz_A moorella thermoacetica rsbs s58e 0.8752 163 277
6qcm-assembly1.cif.gz_d cryo em structure of the listeria stressosome 0.8641 160 269
7b0u-assembly1.cif.gz_F stressosome complex from listeria innocua 0.8561 163 277
ID Description Score Start End Superfamily
3if5A02 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA;STAS domain 0.8517 158 238 3.30.750.24
af_A0A1D8PRZ2_628_764_3.30.750.24 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA;STAS domain 0.844 169 272 3.30.750.24
af_Q7K155_460_563_3.30.750.24 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA;STAS domain 0.834 171 263 3.30.750.24
af_P53273_654_785_3.30.750.24 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA;STAS domain 0.8175 169 275 3.30.750.24
af_P9WGF7_437_560_3.30.750.24 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA;STAS domain 0.8173 165 274 3.30.750.24
ID Description Score Start End GO Terms
AF-A0A017T942-F1-model_v4 RsbR, positive regulator of sigma-B 0.8969 162 284
AF-A0A564Q1T5-F1-model_v4 STAS domain-containing protein 0.8886 160 253
AF-A0A6J4IML5-F1-model_v4 RsbS, negative regulator of sigma-B 0.8875 163 283
AF-A0A6G2XJT0-F1-model_v4 STAS domain-containing protein 0.8857 161 284
AF-A0A1I1NNQ9-F1-model_v4 Anti-anti-sigma factor 0.881 163 277

Feature Viewer

pLDDT pTM Quality
87.57 0.57 Medium
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Predicted Structure (AlphaFold2)

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