F355259
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 243 | 155 | 486 | 618 |
Family's Representative Sequence
| Representative Sequence | 3300005262|Ga0065165_1002504|Ga0065165_10025046 |
| Length | 655 |
| Sequence | MCVIHRRVAVVHKPGGGLVLAIRTMVGRFDERFLEEVKSRLRPSDVIGRTVKLRKQGREYVGLSPFNKEKTPSFYVNDDKGQFFDFSSGKTGDLITFLQETERAAEAGVPLPAVDPRGAEQEKQRQGLADWLELAAQWFEGELKRPPGRDARAYLEKRGLPDKEWPRFRLGFSPPGRTALKDYLVTKGAKPAELVEAGLLIAPEDGGAPYDRFRDRIIFPILDVRGRVVSFGGRAMDPQARAKYLNGPETVVFHKGHQLYGLSEARKILAAAKADEDLPLVVVEGYMDVIACHRAGVPAVAAMGTALGEDQMEVLWRHHPEPTLCFDGDRAGRQAAARAMDRALPLLKPGKSFKFAIVEGGKDPDDVLREQGPAVLKQQLSQTTPFAEALFIREKDAEPLDTPERKTALKVRLRKLAATIADGDLSAAYKEDLLGRFEALSPRAAASQPVYEPGAAGRALAKHGWAKRKAALAGATPEGKTAALELQQSARPLAAALAKAALHDPAIIDDSIELVGSRGFGDEKLDRIAHELVQLRYEAGDAEFEVVVRRLRARGIDDEMLARMERDAGKAGVAAPFLDPSAARERTRALWRQAFELLMQLEALERAVEGAVSDVARDPSAITALGPLKAERDHLRRLINSDWTQDGGPPAALPH |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 2 | 3300003578 | Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) | Metatranscriptome | Unclassified |
| 3 | 3300003791 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 4 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 12 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 13 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 15 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 16 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 17 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 18 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 19 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 20 | 3300006042 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 | Metagenome | Endosphere |
| 21 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 22 | 3300006178 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 | Metagenome | Endosphere |
| 23 | 3300009092 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG | Metagenome | Rhizosphere |
| 24 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 25 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 26 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 27 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 28 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 29 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 30 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 31 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 32 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 33 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 34 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 35 | 3300021361 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 | Metagenome | Rhizosphere |
| 36 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 37 | 3300025250 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) | Metagenome | Unclassified |
| 38 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 39 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 40 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 41 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 42 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 43 | 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 51 | 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300028786 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM | Metagenome | Unclassified |
| 67 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 68 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 69 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 70 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 71 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 72 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 73 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 74 | 3300035113 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 | Metagenome | Rhizosphere |
| 75 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 76 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 77 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 78 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 79 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 80 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 81 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 82 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 83 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 84 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 85 | 3300039450 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 | Metagenome | Unclassified |
| 86 | 3300046471 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere | Metagenome | Rhizosphere |
| 87 | 3300046522 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere | Metagenome | Rhizosphere |
| 88 | 3300046530 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere | Metagenome | Rhizosphere |
| 89 | 3300046538 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere | Metagenome | Rhizosphere |
| 90 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 91 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 92 | 3300046648 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere | Metagenome | Rhizosphere |
| 93 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 94 | 3300046684 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere | Metagenome | Rhizosphere |
| 95 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 96 | 3300046694 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere | Metagenome | Rhizosphere |
| 97 | 3300047443 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere | Metagenome | Rhizosphere |
| 98 | 3300047445 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere | Metagenome | Rhizosphere |
| 99 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 100 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 101 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 102 | 3300048910 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 | Metagenome | Rhizoplane |
| 103 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 104 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 105 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 106 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 107 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 108 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 109 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 110 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 111 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 112 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 113 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 114 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 115 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 116 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 117 | 3300049686 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control | Metagenome | Rhizosphere |
| 118 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 119 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 120 | 3300053080 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere | Metagenome | Endosphere |
| 121 | 3300053087 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere | Metagenome | Endosphere |
| 122 | 3300053088 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere | Metagenome | Endosphere |
| 123 | 3300053096 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere | Metagenome | Endosphere |
| 124 | 3300053103 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere | Metagenome | Endosphere |
| 125 | 3300053104 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere | Metagenome | Endosphere |
| 126 | 3300053111 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere | Metagenome | Endosphere |
| 127 | 3300053119 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere | Metagenome | Endosphere |
| 128 | 3300053122 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere | Metagenome | Endosphere |
| 129 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 130 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 131 | 3300053177 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere | Metagenome | Endosphere |
| 132 | 3300053178 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere | Metagenome | Endosphere |
| 133 | 3300053730 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere | Metagenome | Endosphere |
| 134 | 2585428106 | Caulobacter sp. OV484 | Isolate | Rhizosphere |
| 135 | 2643221552 | Caulobacter sp. Root1472 | Isolate | Unclassified |
| 136 | 2643221574 | Brevundimonas sp. Root608 | Isolate | Unclassified |
| 137 | 2643221598 | Phenylobacterium sp. Root700 | Isolate | Unclassified |
| 138 | 2643221614 | Phenylobacterium sp. Root77 | Isolate | Unclassified |
| 139 | 2643221640 | Caulobacter sp. Root342 | Isolate | Unclassified |
| 140 | 2643221642 | Caulobacter sp. Root343 | Isolate | Unclassified |
| 141 | 2643221661 | Phenylobacterium sp. Root1277 | Isolate | Unclassified |
| 142 | 2643221663 | Brevundimonas sp. Root1279 | Isolate | Unclassified |
| 143 | 2643221666 | Phenylobacterium sp. Root1290 | Isolate | Unclassified |
| 144 | 2643221699 | Brevundimonas sp. Root1423 | Isolate | Unclassified |
| 145 | 2791355048 | Caulobacter flavus CGMCC1 15093 | Isolate | Rhizosphere |
| 146 | 2843744320 | Caulobacter flavus RHGG3 | Isolate | Unclassified |
| 147 | 2849560528 | Caulobacter zeae 410 | Isolate | Unclassified |
| 148 | 2849573788 | Caulobacter endophyticus 774 | Isolate | Unclassified |
| 149 | 2857504554 | Caulobacter sp. R-72291 | Isolate | Unclassified |
| 150 | 2884960567 | Caulobacter sp. 602-1 | Isolate | Rhizosphere |
| 151 | 2898329390 | Caulobacter sp. 602-2 | Isolate | Rhizosphere |
| 152 | 2928531327 | Caulobacter sp. 1776 | Isolate | Rhizosphere |
| 153 | 2928972540 | Brevundimonas sp. 1080 | Isolate | Rhizosphere |
| 154 | 2941485952 | Brevundimonas faecalis 2814 | Isolate | Rhizosphere |
| 155 | 2977240413 | Brevundimonas vesicularis SORGH_AS 431 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 90.12 |
| Metatranscriptomes | 0.41 |
| Isolates | 9.47 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 15.23 |
| Nodule | 0 |
| Rhizoplane | 3.29 |
| Rhizosphere | 65.84 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0065165_1002504 | 3300005262 | Bacteria | 15355 |
| 2 | Ga0006562J51391_1069963 | 3300003578 | Bacteria | 3179 |
| 3 | Ga0055530_10002290 | 3300003791 | Bacteria | 12559 |
| 4 | Ga0065165_1002716 | 3300005262 | Bacteria | 14177 |
| 5 | Ga0070670_100000009 | 3300005331 | Bacteria | 291074 |
| 6 | Ga0070670_100037751 | 3300005331 | Bacteria | 4155 |
| 7 | Ga0070666_10017410 | 3300005335 | Bacteria | 4607 |
| 8 | Ga0070668_100000191 | 3300005347 | Bacteria | 40174 |
| 9 | Ga0070668_100000555 | 3300005347 | Bacteria | 24962 |
| 10 | Ga0070668_100003024 | 3300005347 | Bacteria | 12438 |
| 11 | Ga0070668_100009642 | 3300005347 | Bacteria | 7161 |
| 12 | Ga0070668_100019437 | 3300005347 | Bacteria | 5112 |
| 13 | Ga0070669_100013030 | 3300005353 | Bacteria | 5905 |
| 14 | Ga0070671_100053264 | 3300005355 | Bacteria | 3364 |
| 15 | Ga0070671_100057001 | 3300005355 | Bacteria | 3250 |
| 16 | Ga0070659_100005136 | 3300005366 | Bacteria | 9388 |
| 17 | Ga0070659_100128787 | 3300005366 | Bacteria | 2054 |
| 18 | Ga0070667_100000078 | 3300005367 | Bacteria | 119527 |
| 19 | Ga0070667_100006944 | 3300005367 | Bacteria | 9407 |
| 20 | Ga0070681_10014639 | 3300005458 | Bacteria | 7803 |
| 21 | Ga0070681_10120765 | 3300005458 | Bacteria | 2555 |
| 22 | Ga0070679_100016316 | 3300005530 | Bacteria | 7159 |
| 23 | Ga0070665_100001281 | 3300005548 | Bacteria | 30110 |
| 24 | Ga0070665_100002379 | 3300005548 | Bacteria | 20778 |
| 25 | Ga0070665_100011613 | 3300005548 | Bacteria | 8904 |
| 26 | Ga0068855_100059639 | 3300005563 | Bacteria | 4464 |
| 27 | Ga0068855_100182768 | 3300005563 | Bacteria | 2370 |
| 28 | Ga0068864_100000052 | 3300005618 | Bacteria | 133777 |
| 29 | Ga0068864_100000250 | 3300005618 | Bacteria | 47956 |
| 30 | Ga0068864_100006930 | 3300005618 | Bacteria | 9297 |
| 31 | Ga0068863_100000019 | 3300005841 | Bacteria | 205585 |
| 32 | Ga0068863_100006335 | 3300005841 | Bacteria | 11605 |
| 33 | Ga0068863_100014509 | 3300005841 | Bacteria | 7587 |
| 34 | Ga0068863_100029203 | 3300005841 | Bacteria | 5264 |
| 35 | Ga0068858_100000479 | 3300005842 | Bacteria | 41666 |
| 36 | Ga0068858_100001420 | 3300005842 | Bacteria | 24630 |
| 37 | Ga0068860_100000292 | 3300005843 | Bacteria | 70893 |
| 38 | Ga0068860_100000651 | 3300005843 | Bacteria | 40516 |
| 39 | Ga0068860_100003086 | 3300005843 | Bacteria | 17227 |
| 40 | Ga0068862_100003472 | 3300005844 | Bacteria | 13555 |
| 41 | Ga0068862_100007846 | 3300005844 | Bacteria | 8829 |
| 42 | Ga0068862_100018954 | 3300005844 | Bacteria | 5734 |
| 43 | Ga0075368_10006199 | 3300006042 | Bacteria | 4166 |
| 44 | Ga0075364_10002414 | 3300006051 | Bacteria | 10469 |
| 45 | Ga0075367_10004143 | 3300006178 | Bacteria | 7034 |
| 46 | Ga0105250_10010470 | 3300009092 | Bacteria | 3865 |
| 47 | Ga0105240_10008207 | 3300009093 | Bacteria | 14965 |
| 48 | Ga0105240_10036381 | 3300009093 | Bacteria | 6334 |
| 49 | Ga0105240_10036638 | 3300009093 | Bacteria | 6308 |
| 50 | Ga0105248_10003187 | 3300009177 | Bacteria | 18185 |
| 51 | Ga0105248_10004634 | 3300009177 | Bacteria | 15207 |
| 52 | Ga0105248_10007703 | 3300009177 | Bacteria | 11833 |
| 53 | Ga0105248_10062704 | 3300009177 | Bacteria | 4174 |
| 54 | Ga0105238_10003874 | 3300009551 | Bacteria | 14857 |
| 55 | Ga0105249_10001734 | 3300009553 | Bacteria | 19055 |
| 56 | Ga0157373_10009051 | 3300013100 | Bacteria | 7368 |
| 57 | Ga0157373_10009308 | 3300013100 | Bacteria | 7262 |
| 58 | Ga0157370_10097002 | 3300013104 | Bacteria | 2765 |
| 59 | Ga0157369_10030218 | 3300013105 | Bacteria | 5977 |
| 60 | Ga0163162_10049072 | 3300013306 | Bacteria | 4230 |
| 61 | Ga0163162_10088379 | 3300013306 | Bacteria | 3178 |
| 62 | Ga0157372_10157479 | 3300013307 | Bacteria | 2624 |
| 63 | Ga0163163_10011534 | 3300014325 | Bacteria | 8026 |
| 64 | Ga0163163_10062925 | 3300014325 | Bacteria | 3678 |
| 65 | Ga0163163_10122513 | 3300014325 | Bacteria | 2635 |
| 66 | Ga0157379_10000663 | 3300014968 | Bacteria | 27864 |
| 67 | Ga0213872_10006271 | 3300021361 | Bacteria | 6001 |
| 68 | Ga0213876_10000449 | 3300021384 | Bacteria | 33218 |
| 69 | Ga0209026_1000525 | 3300025250 | Bacteria | 26985 |
| 70 | Ga0209676_1000082 | 3300025292 | Bacteria | 280400 |
| 71 | Ga0209676_1002687 | 3300025292 | Bacteria | 12029 |
| 72 | Ga0209564_1004177 | 3300025295 | Bacteria | 9019 |
| 73 | Ga0209758_1000215 | 3300025297 | Bacteria | 125461 |
| 74 | Ga0209758_1001935 | 3300025297 | Bacteria | 22484 |
| 75 | Ga0209050_1000049 | 3300025298 | Bacteria | 364096 |
| 76 | Ga0209257_1000459 | 3300025304 | Bacteria | 75629 |
| 77 | Ga0209257_1000924 | 3300025304 | Bacteria | 40835 |
| 78 | Ga0209257_1002694 | 3300025304 | Bacteria | 16967 |
| 79 | Ga0207680_10015161 | 3300025903 | Bacteria | 4016 |
| 80 | Ga0207705_10008855 | 3300025909 | Bacteria | 7337 |
| 81 | Ga0207695_10027052 | 3300025913 | Bacteria | 6390 |
| 82 | Ga0207695_10046195 | 3300025913 | Bacteria | 4617 |
| 83 | Ga0207695_10066155 | 3300025913 | Bacteria | 3713 |
| 84 | Ga0207694_10023691 | 3300025924 | Bacteria | 4661 |
| 85 | Ga0207650_10000014 | 3300025925 | Bacteria | 398063 |
| 86 | Ga0207650_10024605 | 3300025925 | Bacteria | 4283 |
| 87 | Ga0207644_10043282 | 3300025931 | Bacteria | 3194 |
| 88 | Ga0207690_10003870 | 3300025932 | Bacteria | 8847 |
| 89 | Ga0207706_10062040 | 3300025933 | Bacteria | 3293 |
| 90 | Ga0207704_10000936 | 3300025938 | Bacteria | 12924 |
| 91 | Ga0207711_10006276 | 3300025941 | Bacteria | 10029 |
| 92 | Ga0207711_10049023 | 3300025941 | Bacteria | 3615 |
| 93 | Ga0207679_10004918 | 3300025945 | Bacteria | 8331 |
| 94 | Ga0207667_10027816 | 3300025949 | Bacteria | 6149 |
| 95 | Ga0207667_10029796 | 3300025949 | Bacteria | 5912 |
| 96 | Ga0207667_10099105 | 3300025949 | Bacteria | 3007 |
| 97 | Ga0207712_10002549 | 3300025961 | Bacteria | 11703 |
| 98 | Ga0207668_10000067 | 3300025972 | Bacteria | 83712 |
| 99 | Ga0207668_10000073 | 3300025972 | Bacteria | 76313 |
| 100 | Ga0207668_10005570 | 3300025972 | Bacteria | 7424 |
| 101 | Ga0207668_10033871 | 3300025972 | Bacteria | 3387 |
| 102 | Ga0207668_10056370 | 3300025972 | Bacteria | 2736 |
| 103 | Ga0207658_10000485 | 3300025986 | Bacteria | 36718 |
| 104 | Ga0207658_10005254 | 3300025986 | Bacteria | 8908 |
| 105 | Ga0207658_10017820 | 3300025986 | Bacteria | 4893 |
| 106 | Ga0207658_10034120 | 3300025986 | Bacteria | 3634 |
| 107 | Ga0207703_10000138 | 3300026035 | Bacteria | 87646 |
| 108 | Ga0207639_10017787 | 3300026041 | Bacteria | 5040 |
| 109 | Ga0207702_10083912 | 3300026078 | Bacteria | 2773 |
| 110 | Ga0207641_10000005 | 3300026088 | Bacteria | 470841 |
| 111 | Ga0207641_10003291 | 3300026088 | Bacteria | 14370 |
| 112 | Ga0207641_10016747 | 3300026088 | Bacteria | 6003 |
| 113 | Ga0207641_10060513 | 3300026088 | Bacteria | 3228 |
| 114 | Ga0207676_10000049 | 3300026095 | Bacteria | 133695 |
| 115 | Ga0207676_10000069 | 3300026095 | Bacteria | 104526 |
| 116 | Ga0268266_10000003 | 3300028379 | Bacteria | 1701703 |
| 117 | Ga0268266_10000221 | 3300028379 | Bacteria | 99332 |
| 118 | Ga0268266_10006930 | 3300028379 | Bacteria | 10309 |
| 119 | Ga0268265_10003965 | 3300028380 | Bacteria | 10426 |
| 120 | Ga0268265_10005509 | 3300028380 | Bacteria | 8639 |
| 121 | Ga0268265_10046155 | 3300028380 | Bacteria | 3255 |
| 122 | Ga0268264_10000055 | 3300028381 | Bacteria | 314947 |
| 123 | Ga0268264_10000199 | 3300028381 | Bacteria | 122707 |
| 124 | Ga0268264_10042261 | 3300028381 | Bacteria | 3773 |
| 125 | Ga0307517_10000710 | 3300028786 | Bacteria | 57392 |
| 126 | Ga0265338_10027047 | 3300028800 | Bacteria | 5766 |
| 127 | Ga0265338_10050643 | 3300028800 | Bacteria | 3751 |
| 128 | Ga0265338_10068662 | 3300028800 | Bacteria | 3052 |
| 129 | Ga0265327_10000140 | 3300031251 | Bacteria | 158935 |
| 130 | Ga0265327_10002306 | 3300031251 | Bacteria | 20397 |
| 131 | Ga0265327_10011515 | 3300031251 | Bacteria | 6077 |
| 132 | Ga0265327_10025140 | 3300031251 | Bacteria | 3479 |
| 133 | Ga0307513_10000276 | 3300031456 | Bacteria | 74546 |
| 134 | Ga0307513_10005771 | 3300031456 | Bacteria | 16278 |
| 135 | Ga0307513_10033021 | 3300031456 | Bacteria | 5824 |
| 136 | Ga0265314_10022702 | 3300031711 | Bacteria | 4803 |
| 137 | Ga0307516_10000022 | 3300031730 | Bacteria | 191854 |
| 138 | Ga0307406_10001735 | 3300031901 | Bacteria | 11953 |
| 139 | Ga0307414_10079624 | 3300032004 | Bacteria | 2392 |
| 140 | Ga0373936_0004465 | 3300035113 | Bacteria | 5292 |
| 141 | Ga0373927_0000188 | 3300035695 | Bacteria | 49189 |
| 142 | Ga0373925_0000067 | 3300037068 | Bacteria | 110348 |
| 143 | Ga0395899_0000361 | 3300037312 | Bacteria | 55292 |
| 144 | Ga0395900_0000237 | 3300037418 | Bacteria | 86507 |
| 145 | Ga0395898_0002832 | 3300037466 | Bacteria | 19843 |
| 146 | Ga0395905_0001770 | 3300037471 | Bacteria | 25092 |
| 147 | Ga0395905_0088806 | 3300037471 | Bacteria | 2897 |
| 148 | Ga0436364_0886514 | 3300037853 | Bacteria | 2264 |
| 149 | Ga0395901_0000028 | 3300038443 | Bacteria | 242653 |
| 150 | Ga0395901_0102593 | 3300038443 | Bacteria | 3002 |
| 151 | Ga0436365_0392834 | 3300039437 | Bacteria | 5276 |
| 152 | Ga0436365_0475330 | 3300039437 | Bacteria | 4239 |
| 153 | Ga0436365_0785177 | 3300039437 | Bacteria | 135054 |
| 154 | Ga0436361_0236226 | 3300039447 | Bacteria | 4800 |
| 155 | Ga0436361_1046256 | 3300039447 | Bacteria | 8685 |
| 156 | Ga0436363_1372154 | 3300039450 | Bacteria | 3306 |
| 157 | Ga0495650_0000024 | 3300046471 | Bacteria | 496674 |
| 158 | Ga0495643_0007327 | 3300046522 | Bacteria | 7129 |
| 159 | Ga0495654_0000026 | 3300046530 | Bacteria | 234940 |
| 160 | Ga0495609_0036241 | 3300046538 | Bacteria | 2228 |
| 161 | Ga0495633_0000162 | 3300046558 | Bacteria | 87434 |
| 162 | Ga0495668_0000587 | 3300046616 | Bacteria | 44244 |
| 163 | Ga0495668_0024028 | 3300046616 | Bacteria | 3469 |
| 164 | Ga0495611_0017620 | 3300046648 | Bacteria | 3057 |
| 165 | Ga0495625_0002881 | 3300046660 | Bacteria | 17986 |
| 166 | Ga0495625_0010558 | 3300046660 | Bacteria | 7627 |
| 167 | Ga0495625_0028177 | 3300046660 | Bacteria | 4215 |
| 168 | Ga0495625_0041012 | 3300046660 | Bacteria | 3371 |
| 169 | Ga0495669_0000004 | 3300046684 | Bacteria | 208878 |
| 170 | Ga0495669_0000438 | 3300046684 | Bacteria | 19819 |
| 171 | Ga0495613_0000380 | 3300046689 | Bacteria | 38251 |
| 172 | Ga0495649_0003163 | 3300046694 | Bacteria | 11250 |
| 173 | Ga0495687_010687 | 3300047443 | Bacteria | 5012 |
| 174 | Ga0495677_0012546 | 3300047445 | Bacteria | 3090 |
| 175 | Ga0495686_0002721 | 3300047472 | Bacteria | 16176 |
| 176 | Ga0495686_0005750 | 3300047472 | Bacteria | 9691 |
| 177 | Ga0496101_0030923 | 3300048904 | Bacteria | 3759 |
| 178 | Ga0496102_0043286 | 3300048905 | Bacteria | 4082 |
| 179 | Ga0496102_0052558 | 3300048905 | Bacteria | 3713 |
| 180 | Ga0496107_0064951 | 3300048910 | Bacteria | 2645 |
| 181 | Ga0496109_0001775 | 3300048912 | Bacteria | 17923 |
| 182 | Ga0496112_0043683 | 3300048915 | Bacteria | 4388 |
| 183 | Ga0496115_0004795 | 3300048918 | Bacteria | 9813 |
| 184 | Ga0496115_0015023 | 3300048918 | Bacteria | 5869 |
| 185 | Ga0496116_0020458 | 3300048919 | Bacteria | 5025 |
| 186 | Ga0496117_0024647 | 3300048920 | Bacteria | 4750 |
| 187 | Ga0496118_0008872 | 3300048921 | Bacteria | 10277 |
| 188 | Ga0496119_0018798 | 3300048922 | Bacteria | 5123 |
| 189 | Ga0496121_0000067 | 3300048924 | Bacteria | 261543 |
| 190 | Ga0496121_0037917 | 3300048924 | Bacteria | 4275 |
| 191 | Ga0496122_0008141 | 3300048925 | Bacteria | 11417 |
| 192 | Ga0496123_0000657 | 3300048926 | Bacteria | 57135 |
| 193 | Ga0496125_0000771 | 3300048928 | Bacteria | 52335 |
| 194 | Ga0501033_0003276 | 3300049570 | Bacteria | 13398 |
| 195 | Ga0501034_0008187 | 3300049571 | Bacteria | 11087 |
| 196 | Ga0501037_0023709 | 3300049573 | Bacteria | 4536 |
| 197 | Ga0501257_001176 | 3300049686 | Bacteria | 5354 |
| 198 | Ga0501044_0001952 | 3300049823 | Bacteria | 23850 |
| 199 | nmdc:mga00v17_2018_c1 | 3300050491 | Bacteria | 10467 |
| 200 | Ga0500635_0000374 | 3300053080 | Bacteria | 14027 |
| 201 | Ga0500643_000547 | 3300053087 | Bacteria | 26273 |
| 202 | Ga0500643_001767 | 3300053087 | Bacteria | 11894 |
| 203 | Ga0500643_012976 | 3300053087 | Bacteria | 2964 |
| 204 | Ga0500644_0010884 | 3300053088 | Bacteria | 2471 |
| 205 | Ga0500641_0000303 | 3300053096 | Bacteria | 18342 |
| 206 | Ga0500555_003709 | 3300053103 | Bacteria | 4342 |
| 207 | Ga0500556_0000460 | 3300053104 | Bacteria | 28688 |
| 208 | Ga0500572_002039 | 3300053111 | Bacteria | 5026 |
| 209 | Ga0500595_003559 | 3300053119 | Bacteria | 7233 |
| 210 | Ga0500595_004838 | 3300053119 | Bacteria | 5955 |
| 211 | Ga0500608_000140 | 3300053122 | Bacteria | 29717 |
| 212 | Ga0500608_004417 | 3300053122 | Bacteria | 5444 |
| 213 | Ga0500559_0000006 | 3300053136 | Bacteria | 229895 |
| 214 | Ga0500622_0003199 | 3300053156 | Bacteria | 11152 |
| 215 | Ga0500622_0011542 | 3300053156 | Bacteria | 4809 |
| 216 | Ga0500636_0030369 | 3300053177 | Bacteria | 3195 |
| 217 | Ga0500637_0033199 | 3300053178 | Bacteria | 2881 |
| 218 | Ga0500645_000922 | 3300053730 | Bacteria | 16914 |
| 219 | Ga0500645_001269 | 3300053730 | Bacteria | 13238 |
| 220 | Ga0500645_002534 | 3300053730 | Bacteria | 8062 |
| 221 | 2587917565 | 2585428106 | Bacteria | 5179711 |
| 222 | 2643781475 | 2643221552 | Bacteria | 5708754 |
| 223 | 2643882792 | 2643221574 | Bacteria | 2789653 |
| 224 | 2643999029 | 2643221598 | Bacteria | 4578346 |
| 225 | 2644086329 | 2643221614 | Bacteria | 4260023 |
| 226 | 2644226910 | 2643221640 | Bacteria | 5258820 |
| 227 | 2644233622 | 2643221642 | Bacteria | 5357871 |
| 228 | 2644344827 | 2643221661 | Bacteria | 4267604 |
| 229 | 2644352991 | 2643221663 | Bacteria | 3425771 |
| 230 | 2644367570 | 2643221666 | Bacteria | 4265935 |
| 231 | 2644550278 | 2643221699 | Bacteria | 5731501 |
| 232 | 2644552553 | 2643221699 | Bacteria | 5731501 |
| 233 | 2792460999 | 2791355048 | Bacteria | 5832535 |
| 234 | 2843749282 | 2843744320 | Bacteria | 5659202 |
| 235 | 2849562741 | 2849560528 | Bacteria | 5393480 |
| 236 | 2849577980 | 2849573788 | Bacteria | 5421256 |
| 237 | 2857507180 | 2857504554 | Bacteria | 5369913 |
| 238 | 2884961876 | 2884960567 | Bacteria | 5437054 |
| 239 | 2898331360 | 2898329390 | Bacteria | 5168154 |
| 240 | 2928536004 | 2928531327 | Bacteria | 5101314 |
| 241 | 2928974045 | 2928972540 | Bacteria | 3058286 |
| 242 | 2941489317 | 2941485952 | Bacteria | 3591484 |
| 243 | 2977240987 | 2977240413 | Bacteria | 3191065 |
| 244 | Ga0065165_1002504 | |||
| 245 | Ga0006562J51391_1069963 | |||
| 246 | Ga0055530_10002290 | |||
| 247 | Ga0065165_1002716 | |||
| 248 | Ga0070670_100000009 | |||
| 249 | Ga0070670_100037751 | |||
| 250 | Ga0070666_10017410 | |||
| 251 | Ga0070668_100000191 | |||
| 252 | Ga0070668_100000555 | |||
| 253 | Ga0070668_100003024 | |||
| 254 | Ga0070668_100009642 | |||
| 255 | Ga0070668_100019437 | |||
| 256 | Ga0070669_100013030 | |||
| 257 | Ga0070671_100053264 | |||
| 258 | Ga0070671_100057001 | |||
| 259 | Ga0070659_100005136 | |||
| 260 | Ga0070659_100128787 | |||
| 261 | Ga0070667_100000078 | |||
| 262 | Ga0070667_100006944 | |||
| 263 | Ga0070681_10014639 | |||
| 264 | Ga0070681_10120765 | |||
| 265 | Ga0070679_100016316 | |||
| 266 | Ga0070665_100001281 | |||
| 267 | Ga0070665_100002379 | |||
| 268 | Ga0070665_100011613 | |||
| 269 | Ga0068855_100059639 | |||
| 270 | Ga0068855_100182768 | |||
| 271 | Ga0068864_100000052 | |||
| 272 | Ga0068864_100000250 | |||
| 273 | Ga0068864_100006930 | |||
| 274 | Ga0068863_100000019 | |||
| 275 | Ga0068863_100006335 | |||
| 276 | Ga0068863_100014509 | |||
| 277 | Ga0068863_100029203 | |||
| 278 | Ga0068858_100000479 | |||
| 279 | Ga0068858_100001420 | |||
| 280 | Ga0068860_100000292 | |||
| 281 | Ga0068860_100000651 | |||
| 282 | Ga0068860_100003086 | |||
| 283 | Ga0068862_100003472 | |||
| 284 | Ga0068862_100007846 | |||
| 285 | Ga0068862_100018954 | |||
| 286 | Ga0075368_10006199 | |||
| 287 | Ga0075364_10002414 | |||
| 288 | Ga0075367_10004143 | |||
| 289 | Ga0105250_10010470 | |||
| 290 | Ga0105240_10008207 | |||
| 291 | Ga0105240_10036381 | |||
| 292 | Ga0105240_10036638 | |||
| 293 | Ga0105248_10003187 | |||
| 294 | Ga0105248_10004634 | |||
| 295 | Ga0105248_10007703 | |||
| 296 | Ga0105248_10062704 | |||
| 297 | Ga0105238_10003874 | |||
| 298 | Ga0105249_10001734 | |||
| 299 | Ga0157373_10009051 | |||
| 300 | Ga0157373_10009308 | |||
| 301 | Ga0157370_10097002 | |||
| 302 | Ga0157369_10030218 | |||
| 303 | Ga0163162_10049072 | |||
| 304 | Ga0163162_10088379 | |||
| 305 | Ga0157372_10157479 | |||
| 306 | Ga0163163_10011534 | |||
| 307 | Ga0163163_10062925 | |||
| 308 | Ga0163163_10122513 | |||
| 309 | Ga0157379_10000663 | |||
| 310 | Ga0213872_10006271 | |||
| 311 | Ga0213876_10000449 | |||
| 312 | Ga0209026_1000525 | |||
| 313 | Ga0209676_1000082 | |||
| 314 | Ga0209676_1002687 | |||
| 315 | Ga0209564_1004177 | |||
| 316 | Ga0209758_1000215 | |||
| 317 | Ga0209758_1001935 | |||
| 318 | Ga0209050_1000049 | |||
| 319 | Ga0209257_1000459 | |||
| 320 | Ga0209257_1000924 | |||
| 321 | Ga0209257_1002694 | |||
| 322 | Ga0207680_10015161 | |||
| 323 | Ga0207705_10008855 | |||
| 324 | Ga0207695_10027052 | |||
| 325 | Ga0207695_10046195 | |||
| 326 | Ga0207695_10066155 | |||
| 327 | Ga0207694_10023691 | |||
| 328 | Ga0207650_10000014 | |||
| 329 | Ga0207650_10024605 | |||
| 330 | Ga0207644_10043282 | |||
| 331 | Ga0207690_10003870 | |||
| 332 | Ga0207706_10062040 | |||
| 333 | Ga0207704_10000936 | |||
| 334 | Ga0207711_10006276 | |||
| 335 | Ga0207711_10049023 | |||
| 336 | Ga0207679_10004918 | |||
| 337 | Ga0207667_10027816 | |||
| 338 | Ga0207667_10029796 | |||
| 339 | Ga0207667_10099105 | |||
| 340 | Ga0207712_10002549 | |||
| 341 | Ga0207668_10000067 | |||
| 342 | Ga0207668_10000073 | |||
| 343 | Ga0207668_10005570 | |||
| 344 | Ga0207668_10033871 | |||
| 345 | Ga0207668_10056370 | |||
| 346 | Ga0207658_10000485 | |||
| 347 | Ga0207658_10005254 | |||
| 348 | Ga0207658_10017820 | |||
| 349 | Ga0207658_10034120 | |||
| 350 | Ga0207703_10000138 | |||
| 351 | Ga0207639_10017787 | |||
| 352 | Ga0207702_10083912 | |||
| 353 | Ga0207641_10000005 | |||
| 354 | Ga0207641_10003291 | |||
| 355 | Ga0207641_10016747 | |||
| 356 | Ga0207641_10060513 | |||
| 357 | Ga0207676_10000049 | |||
| 358 | Ga0207676_10000069 | |||
| 359 | Ga0268266_10000003 | |||
| 360 | Ga0268266_10000221 | |||
| 361 | Ga0268266_10006930 | |||
| 362 | Ga0268265_10003965 | |||
| 363 | Ga0268265_10005509 | |||
| 364 | Ga0268265_10046155 | |||
| 365 | Ga0268264_10000055 | |||
| 366 | Ga0268264_10000199 | |||
| 367 | Ga0268264_10042261 | |||
| 368 | Ga0307517_10000710 | |||
| 369 | Ga0265338_10027047 | |||
| 370 | Ga0265338_10050643 | |||
| 371 | Ga0265338_10068662 | |||
| 372 | Ga0265327_10000140 | |||
| 373 | Ga0265327_10002306 | |||
| 374 | Ga0265327_10011515 | |||
| 375 | Ga0265327_10025140 | |||
| 376 | Ga0307513_10000276 | |||
| 377 | Ga0307513_10005771 | |||
| 378 | Ga0307513_10033021 | |||
| 379 | Ga0265314_10022702 | |||
| 380 | Ga0307516_10000022 | |||
| 381 | Ga0307406_10001735 | |||
| 382 | Ga0307414_10079624 | |||
| 383 | Ga0373936_0004465 | |||
| 384 | Ga0373927_0000188 | |||
| 385 | Ga0373925_0000067 | |||
| 386 | Ga0395899_0000361 | |||
| 387 | Ga0395900_0000237 | |||
| 388 | Ga0395898_0002832 | |||
| 389 | Ga0395905_0001770 | |||
| 390 | Ga0395905_0088806 | |||
| 391 | Ga0436364_0886514 | |||
| 392 | Ga0395901_0000028 | |||
| 393 | Ga0395901_0102593 | |||
| 394 | Ga0436365_0392834 | |||
| 395 | Ga0436365_0475330 | |||
| 396 | Ga0436365_0785177 | |||
| 397 | Ga0436361_0236226 | |||
| 398 | Ga0436361_1046256 | |||
| 399 | Ga0436363_1372154 | |||
| 400 | Ga0495650_0000024 | |||
| 401 | Ga0495643_0007327 | |||
| 402 | Ga0495654_0000026 | |||
| 403 | Ga0495609_0036241 | |||
| 404 | Ga0495633_0000162 | |||
| 405 | Ga0495668_0000587 | |||
| 406 | Ga0495668_0024028 | |||
| 407 | Ga0495611_0017620 | |||
| 408 | Ga0495625_0002881 | |||
| 409 | Ga0495625_0010558 | |||
| 410 | Ga0495625_0028177 | |||
| 411 | Ga0495625_0041012 | |||
| 412 | Ga0495669_0000004 | |||
| 413 | Ga0495669_0000438 | |||
| 414 | Ga0495613_0000380 | |||
| 415 | Ga0495649_0003163 | |||
| 416 | Ga0495687_010687 | |||
| 417 | Ga0495677_0012546 | |||
| 418 | Ga0495686_0002721 | |||
| 419 | Ga0495686_0005750 | |||
| 420 | Ga0496101_0030923 | |||
| 421 | Ga0496102_0043286 | |||
| 422 | Ga0496102_0052558 | |||
| 423 | Ga0496107_0064951 | |||
| 424 | Ga0496109_0001775 | |||
| 425 | Ga0496112_0043683 | |||
| 426 | Ga0496115_0004795 | |||
| 427 | Ga0496115_0015023 | |||
| 428 | Ga0496116_0020458 | |||
| 429 | Ga0496117_0024647 | |||
| 430 | Ga0496118_0008872 | |||
| 431 | Ga0496119_0018798 | |||
| 432 | Ga0496121_0000067 | |||
| 433 | Ga0496121_0037917 | |||
| 434 | Ga0496122_0008141 | |||
| 435 | Ga0496123_0000657 | |||
| 436 | Ga0496125_0000771 | |||
| 437 | Ga0501033_0003276 | |||
| 438 | Ga0501034_0008187 | |||
| 439 | Ga0501037_0023709 | |||
| 440 | Ga0501257_001176 | |||
| 441 | Ga0501044_0001952 | |||
| 442 | nmdc:mga00v17_2018_c1 | |||
| 443 | Ga0500635_0000374 | |||
| 444 | Ga0500643_000547 | |||
| 445 | Ga0500643_001767 | |||
| 446 | Ga0500643_012976 | |||
| 447 | Ga0500644_0010884 | |||
| 448 | Ga0500641_0000303 | |||
| 449 | Ga0500555_003709 | |||
| 450 | Ga0500556_0000460 | |||
| 451 | Ga0500572_002039 | |||
| 452 | Ga0500595_003559 | |||
| 453 | Ga0500595_004838 | |||
| 454 | Ga0500608_000140 | |||
| 455 | Ga0500608_004417 | |||
| 456 | Ga0500559_0000006 | |||
| 457 | Ga0500622_0003199 | |||
| 458 | Ga0500622_0011542 | |||
| 459 | Ga0500636_0030369 | |||
| 460 | Ga0500637_0033199 | |||
| 461 | Ga0500645_000922 | |||
| 462 | Ga0500645_001269 | |||
| 463 | Ga0500645_002534 | |||
| 464 | 2587917565 | |||
| 465 | 2643781475 | |||
| 466 | 2643882792 | |||
| 467 | 2643999029 | |||
| 468 | 2644086329 | |||
| 469 | 2644226910 | |||
| 470 | 2644233622 | |||
| 471 | 2644344827 | |||
| 472 | 2644352991 | |||
| 473 | 2644367570 | |||
| 474 | 2644550278 | |||
| 475 | 2644552553 | |||
| 476 | 2792460999 | |||
| 477 | 2843749282 | |||
| 478 | 2849562741 | |||
| 479 | 2849577980 | |||
| 480 | 2857507180 | |||
| 481 | 2884961876 | |||
| 482 | 2898331360 | |||
| 483 | 2928536004 | |||
| 484 | 2928974045 | |||
| 485 | 2941489317 | |||
| 486 | 2977240987 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1d0q-assembly1.cif.gz_B | structure of the zinc-binding domain of bacillus stearothermophilus dna primase | 0.956 | 1 | 95 |
| 5vaz-assembly2.cif.gz_B | crystal structure of a dna primase domain from pseudomonas aeruginosa | 0.8936 | 112 | 423 |
| 1d0q-assembly1.cif.gz_B | structure of the zinc-binding domain of bacillus stearothermophilus dna primase | 0.8843 | 1 | 95 |
| 3b39-assembly1.cif.gz_A | structure of the dnag primase catalytic domain bound to ssdna | 0.8772 | 103 | 420 |
| 1eqn-assembly4.cif.gz_D | e.coli primase catalytic core | 0.8733 | 112 | 420 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P9WNW1_1_101_3.90.580.10 | Alpha Beta;Alpha-Beta Complex;DNA Primase; Chain A;Zinc finger, CHC2-type domain | 0.956 | 2 | 94 | 3.90.580.10 |
| 4e2kA01 | Alpha Beta;Alpha-Beta Complex;DNA primase DNAg catalytic core, N-terminal domain;DNA primase, catalytic core, N-terminal domain | 0.9457 | 106 | 238 | 3.90.980.10 |
| 4e2kA01 | Alpha Beta;Alpha-Beta Complex;DNA primase DNAg catalytic core, N-terminal domain;DNA primase, catalytic core, N-terminal domain | 0.932 | 106 | 238 | 3.90.980.10 |
| 5gujA01 | Alpha Beta;Alpha-Beta Complex;DNA primase DNAg catalytic core, N-terminal domain;DNA primase, catalytic core, N-terminal domain | 0.9304 | 108 | 238 | 3.90.980.10 |
| 5gujA01 | Alpha Beta;Alpha-Beta Complex;DNA primase DNAg catalytic core, N-terminal domain;DNA primase, catalytic core, N-terminal domain | 0.917 | 108 | 238 | 3.90.980.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A831Y4Q6-F1-model_v4 | Zinc finger CHC2-type domain-containing protein | 0.9826 | 1 | 88 |
GO:0003677
GO:0003896 GO:0005737 GO:0008270 |
| AF-A0A3D5UVF1-F1-model_v4 | DNA primase | 0.9752 | 1 | 86 |
GO:0003677
GO:0003896 GO:0005737 GO:0008270 |
| AF-A0A7S3YBI0-F1-model_v4 | Zinc finger CHC2-type domain-containing protein | 0.9697 | 7 | 90 |
GO:0003677
GO:0003896 GO:0005737 GO:0008270 |
| AF-W3Y5L9-F1-model_v4 | deleted | 0.9681 | 3 | 95 |
|
| AF-A0A533ZZD2-F1-model_v4 | Zinc finger CHC2-type domain-containing protein | 0.9635 | 1 | 89 |
GO:0003677
GO:0003896 GO:0005737 GO:0008270 |