F356536
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 244 | 187 | 488 | 224 |
Family's Representative Sequence
| Representative Sequence | 3300025242|Ga0209258_100631|Ga0209258_1006319 |
| Length | 258 |
| Sequence | MTSLDSSTRLPAPPDDEAALVRRIVAGDLASFERLMRANNRRLYRLARATLRDDAEAEDALQEAYLAAHRALAGFRGESALSTWLSRLVTNECLGRLRKRARRDNIFPIVALDAEADPEAAMDDARQPEPPDRALVRTQMRALLERQLDALPAALRSVFVLRAVEELSVEETGQVLGIPEATVRSRHFRARSLLREALAQEIDLAERDLYDFGGTHCDRVVAAVLARLGGAGPKGGSFDPRWFRAGGDGPTETVPAGR |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300025242 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 2 | 3300002705 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS | Metagenome | Unclassified |
| 3 | 3300002738 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA | Metagenome | Unclassified |
| 4 | 3300002741 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL | Metagenome | Unclassified |
| 5 | 3300003781 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 | Metagenome | Endosphere |
| 6 | 3300003792 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 | Metagenome | Endosphere |
| 7 | 3300005295 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) | Metagenome | Rhizosphere |
| 8 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 10 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 11 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 12 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 17 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 18 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 19 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 20 | 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Metagenome | Rhizosphere |
| 21 | 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 23 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 24 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 25 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 26 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 27 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 28 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 29 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 30 | 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Metagenome | Rhizosphere |
| 31 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 32 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 33 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 34 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 35 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300006353 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 | Metagenome | Endosphere |
| 37 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 38 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 39 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 41 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 43 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 44 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 45 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 46 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 47 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 48 | 3300013059 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 49 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 50 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 51 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 52 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 53 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 54 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 55 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 56 | 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 57 | 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 58 | 3300022467 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 59 | 3300025246 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) | Metagenome | Unclassified |
| 60 | 3300025250 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) | Metagenome | Unclassified |
| 61 | 3300025253 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 62 | 3300025256 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) | Metagenome | Unclassified |
| 63 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 64 | 3300025303 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 65 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 66 | 3300025321 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 80 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 82 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 83 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 84 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 85 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 86 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 87 | 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 88 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 89 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 90 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 91 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 92 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 93 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 94 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 95 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 96 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 97 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 98 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 99 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 100 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 101 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 102 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 103 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 104 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 105 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 106 | 3300035725 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 | Metagenome | Rhizosphere |
| 107 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 108 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 109 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 110 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 111 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 112 | 3300042015 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 | Metagenome | Rhizosphere |
| 113 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 114 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 115 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 116 | 3300044683 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R | Metagenome | Rhizosphere |
| 117 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 118 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 119 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 120 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 121 | 3300044719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R | Metagenome | Rhizosphere |
| 122 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 123 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 124 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 125 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 126 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 127 | 3300046454 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere | Metagenome | Rhizosphere |
| 128 | 3300046458 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere | Metagenome | Rhizosphere |
| 129 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 130 | 3300046463 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere | Metagenome | Rhizosphere |
| 131 | 3300046477 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere | Metagenome | Rhizosphere |
| 132 | 3300046500 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere | Metagenome | Rhizosphere |
| 133 | 3300046511 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere | Metagenome | Rhizosphere |
| 134 | 3300046514 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere | Metagenome | Rhizosphere |
| 135 | 3300046517 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere | Metagenome | Rhizosphere |
| 136 | 3300046526 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere | Metagenome | Rhizosphere |
| 137 | 3300046531 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere | Metagenome | Rhizosphere |
| 138 | 3300046536 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere | Metagenome | Rhizosphere |
| 139 | 3300046539 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere | Metagenome | Rhizosphere |
| 140 | 3300046543 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere | Metagenome | Rhizosphere |
| 141 | 3300046557 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere | Metagenome | Rhizosphere |
| 142 | 3300046559 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere | Metagenome | Rhizosphere |
| 143 | 3300046663 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere | Metagenome | Rhizosphere |
| 144 | 3300046665 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere | Metagenome | Rhizosphere |
| 145 | 3300046678 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere | Metagenome | Rhizosphere |
| 146 | 3300046679 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere | Metagenome | Rhizosphere |
| 147 | 3300046680 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere | Metagenome | Rhizosphere |
| 148 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 149 | 3300046692 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere | Metagenome | Rhizosphere |
| 150 | 3300047315 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere | Metagenome | Rhizosphere |
| 151 | 3300047317 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere | Metagenome | Rhizosphere |
| 152 | 3300047319 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere | Metagenome | Rhizosphere |
| 153 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 154 | 3300047321 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere | Metagenome | Rhizosphere |
| 155 | 3300047322 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere | Metagenome | Rhizosphere |
| 156 | 3300047446 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere | Metagenome | Rhizosphere |
| 157 | 3300047469 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere | Metagenome | Rhizosphere |
| 158 | 3300048088 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere | Metagenome | Rhizosphere |
| 159 | 3300048903 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled | Metagenome | Rhizoplane |
| 160 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 161 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 162 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 163 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 164 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 165 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 166 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 167 | 3300048916 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 | Metagenome | Rhizoplane |
| 168 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 169 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 170 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 171 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 172 | 3300049460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere | Metagenome | Rhizosphere |
| 173 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 174 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 175 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 176 | 3300050496 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation | Metagenome | Endosphere |
| 177 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 178 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 179 | 3300053092 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere | Metagenome | Endosphere |
| 180 | 3300053177 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere | Metagenome | Endosphere |
| 181 | 3300061719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 | Metagenome | Rhizosphere |
| 182 | 2515154122 | Paraburkholderia atlantica JPY251 | Isolate | Nodule |
| 183 | 2643221683 | Variovorax sp. Root473 | Isolate | Unclassified |
| 184 | 2881927736 | Candidimonas sp. SYP-B2681 | Isolate | Rhizosphere |
| 185 | 2885270888 | Paraburkholderia sp. UYCPa14C | Isolate | Unclassified |
| 186 | 2902682994 | Paraburkholderia atlantica CNPSo 3155 | Isolate | Unclassified |
| 187 | 2945945610 | Variovorax paradoxus W1I18 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 95.9 |
| Metatranscriptomes | 1.64 |
| Isolates | 2.46 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 5.33 |
| Nodule | 0.41 |
| Rhizoplane | 3.69 |
| Rhizosphere | 83.2 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 9.43 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0209258_100631 | 3300025242 | Bacteria | 27852 |
| 2 | JGI25156J39149_1000602 | 3300002705 | Bacteria | 19993 |
| 3 | JGI25154J39366_1000337 | 3300002738 | Bacteria | 27001 |
| 4 | JGI25157J39369_1000073 | 3300002741 | Bacteria | 88360 |
| 5 | JGI25157J39369_1000296 | 3300002741 | Bacteria | 36294 |
| 6 | Ga0055536_1001870 | 3300003781 | Bacteria | 12269 |
| 7 | Ga0055540_1001705 | 3300003792 | Bacteria | 12645 |
| 8 | Ga0065707_10138638 | 3300005295 | Bacteria | 1803 |
| 9 | Ga0070658_10023101 | 3300005327 | Bacteria | 4992 |
| 10 | Ga0070658_10074108 | 3300005327 | Bacteria | 2792 |
| 11 | Ga0070683_100035131 | 3300005329 | Unclassified | 4582 |
| 12 | Ga0070683_100089629 | 3300005329 | Bacteria | 2887 |
| 13 | Ga0070680_100175160 | 3300005336 | Unclassified | 1806 |
| 14 | Ga0068868_100021017 | 3300005338 | Bacteria | 4914 |
| 15 | Ga0070660_100274167 | 3300005339 | Bacteria | 1379 |
| 16 | Ga0070673_100014167 | 3300005364 | Bacteria | 5542 |
| 17 | Ga0070714_100008484 | 3300005435 | Bacteria | 8029 |
| 18 | Ga0070678_100490898 | 3300005456 | Unclassified | 1082 |
| 19 | Ga0070681_10043928 | 3300005458 | Bacteria | 4473 |
| 20 | Ga0070707_100505577 | 3300005468 | Bacteria | 1170 |
| 21 | Ga0070679_100044954 | 3300005530 | Unclassified | 4400 |
| 22 | Ga0070684_100036693 | 3300005535 | Unclassified | 4200 |
| 23 | Ga0070684_100096623 | 3300005535 | Bacteria | 2634 |
| 24 | Ga0070686_100574894 | 3300005544 | Unclassified | 885 |
| 25 | Ga0070693_100104495 | 3300005547 | Bacteria | 1731 |
| 26 | Ga0070665_100001307 | 3300005548 | Bacteria | 29756 |
| 27 | Ga0070665_100477684 | 3300005548 | Unclassified | 1257 |
| 28 | Ga0068855_100004846 | 3300005563 | Bacteria | 16426 |
| 29 | Ga0068855_100113443 | 3300005563 | Bacteria | 3109 |
| 30 | Ga0068857_100003528 | 3300005577 | Bacteria | 13073 |
| 31 | Ga0068854_100024341 | 3300005578 | Bacteria | 4144 |
| 32 | Ga0068856_100016216 | 3300005614 | Bacteria | 7208 |
| 33 | Ga0068852_100000905 | 3300005616 | Bacteria | 19632 |
| 34 | Ga0068852_100538487 | 3300005616 | Unclassified | 1167 |
| 35 | Ga0068852_100607062 | 3300005616 | Bacteria | 1099 |
| 36 | Ga0068859_100290188 | 3300005617 | Bacteria | 1729 |
| 37 | Ga0068861_100114314 | 3300005719 | Unclassified | 2167 |
| 38 | Ga0068851_10000498 | 3300005834 | Bacteria | 17108 |
| 39 | Ga0068862_100018288 | 3300005844 | Bacteria | 5837 |
| 40 | Ga0068862_100318446 | 3300005844 | Bacteria | 1435 |
| 41 | Ga0081455_10001215 | 3300005937 | Bacteria | 32285 |
| 42 | Ga0070717_10034466 | 3300006028 | Bacteria | 4093 |
| 43 | Ga0075366_10033235 | 3300006195 | Bacteria | 3038 |
| 44 | Ga0097621_100296653 | 3300006237 | Unclassified | 1427 |
| 45 | Ga0075370_10034645 | 3300006353 | Bacteria | 2830 |
| 46 | Ga0075428_100000140 | 3300006844 | Bacteria | 64282 |
| 47 | Ga0075429_100006229 | 3300006880 | Bacteria | 10325 |
| 48 | Ga0097620_100290183 | 3300006931 | Bacteria | 1729 |
| 49 | Ga0105240_10008383 | 3300009093 | Bacteria | 14794 |
| 50 | Ga0105240_10023776 | 3300009093 | Bacteria | 8095 |
| 51 | Ga0105240_10031336 | 3300009093 | Bacteria | 6898 |
| 52 | Ga0105240_10045107 | 3300009093 | Bacteria | 5595 |
| 53 | Ga0105240_10384079 | 3300009093 | Bacteria | 1585 |
| 54 | Ga0105240_10401420 | 3300009093 | Bacteria | 1544 |
| 55 | Ga0105240_10668150 | 3300009093 | Unclassified | 1137 |
| 56 | Ga0111539_10000094 | 3300009094 | Bacteria | 93849 |
| 57 | Ga0105243_10005636 | 3300009148 | Bacteria | 9747 |
| 58 | Ga0105243_10016158 | 3300009148 | Bacteria | 5647 |
| 59 | Ga0105242_10871118 | 3300009176 | Bacteria | 898 |
| 60 | Ga0105248_10311206 | 3300009177 | Bacteria | 1774 |
| 61 | Ga0105237_10218073 | 3300009545 | Bacteria | 1908 |
| 62 | Ga0105238_10413740 | 3300009551 | Bacteria | 1342 |
| 63 | Ga0105238_10512121 | 3300009551 | Bacteria | 1202 |
| 64 | Ga0105238_10934061 | 3300009551 | Bacteria | 887 |
| 65 | Ga0105239_10131755 | 3300010375 | Bacteria | 2781 |
| 66 | Ga0105239_10191753 | 3300010375 | Bacteria | 2287 |
| 67 | Ga0105239_11487041 | 3300010375 | Unclassified | 783 |
| 68 | Ga0154012_137111 | 3300013059 | Bacteria | 2486 |
| 69 | Ga0157370_10192773 | 3300013104 | Bacteria | 1892 |
| 70 | Ga0157369_10002660 | 3300013105 | Bacteria | 21326 |
| 71 | Ga0157369_10018722 | 3300013105 | Bacteria | 7765 |
| 72 | Ga0157369_10109624 | 3300013105 | Bacteria | 2935 |
| 73 | Ga0157374_10056021 | 3300013296 | Bacteria | 3680 |
| 74 | Ga0157374_10385555 | 3300013296 | Bacteria | 1396 |
| 75 | Ga0163162_10472470 | 3300013306 | Unclassified | 1385 |
| 76 | Ga0163163_10425854 | 3300014325 | Unclassified | 1386 |
| 77 | Ga0157379_10022359 | 3300014968 | Bacteria | 5601 |
| 78 | Ga0157376_10826342 | 3300014969 | Bacteria | 940 |
| 79 | Ga0206354_11009918 | 3300020081 | Bacteria | 2922 |
| 80 | Ga0206353_10312276 | 3300020082 | Bacteria | 2493 |
| 81 | Ga0224712_10021775 | 3300022467 | Bacteria | 2199 |
| 82 | Ga0209646_1000067 | 3300025246 | Bacteria | 241595 |
| 83 | Ga0209026_1000033 | 3300025250 | Bacteria | 318512 |
| 84 | Ga0209677_100087 | 3300025253 | Bacteria | 109892 |
| 85 | Ga0209759_1000024 | 3300025256 | Bacteria | 318512 |
| 86 | Ga0209759_1006371 | 3300025256 | Bacteria | 3975 |
| 87 | Ga0209759_1013266 | 3300025256 | Bacteria | 2238 |
| 88 | Ga0209676_1000581 | 3300025292 | Bacteria | 54811 |
| 89 | Ga0209051_1000496 | 3300025303 | Bacteria | 50669 |
| 90 | Ga0209257_1005292 | 3300025304 | Bacteria | 9188 |
| 91 | Ga0207656_10004245 | 3300025321 | Bacteria | 4990 |
| 92 | Ga0207699_10156585 | 3300025906 | Bacteria | 1513 |
| 93 | Ga0207705_10092716 | 3300025909 | Bacteria | 2213 |
| 94 | Ga0207654_10044062 | 3300025911 | Bacteria | 2532 |
| 95 | Ga0207707_10151837 | 3300025912 | Unclassified | 2025 |
| 96 | Ga0207695_10024554 | 3300025913 | Bacteria | 6775 |
| 97 | Ga0207695_10033640 | 3300025913 | Bacteria | 5586 |
| 98 | Ga0207695_10051449 | 3300025913 | Bacteria | 4325 |
| 99 | Ga0207695_10096493 | 3300025913 | Bacteria | 2958 |
| 100 | Ga0207695_10206079 | 3300025913 | Bacteria | 1879 |
| 101 | Ga0207695_10257123 | 3300025913 | Unclassified | 1645 |
| 102 | Ga0207695_10389233 | 3300025913 | Bacteria | 1279 |
| 103 | Ga0207660_10037844 | 3300025917 | Unclassified | 3365 |
| 104 | Ga0207657_10122391 | 3300025919 | Bacteria | 2140 |
| 105 | Ga0207652_10033491 | 3300025921 | Unclassified | 4327 |
| 106 | Ga0207646_10404351 | 3300025922 | Bacteria | 1233 |
| 107 | Ga0207694_10379965 | 3300025924 | Bacteria | 1172 |
| 108 | Ga0207694_10424314 | 3300025924 | Bacteria | 1108 |
| 109 | Ga0207659_10233709 | 3300025926 | Bacteria | 1484 |
| 110 | Ga0207700_10260761 | 3300025928 | Bacteria | 1484 |
| 111 | Ga0207700_10474425 | 3300025928 | Bacteria | 1105 |
| 112 | Ga0207664_10021509 | 3300025929 | Bacteria | 4799 |
| 113 | Ga0207709_10000284 | 3300025935 | Bacteria | 57743 |
| 114 | Ga0207691_10315509 | 3300025940 | Bacteria | 1341 |
| 115 | Ga0207711_10176756 | 3300025941 | Bacteria | 1940 |
| 116 | Ga0207661_10074529 | 3300025944 | Bacteria | 2782 |
| 117 | Ga0207661_10109045 | 3300025944 | Bacteria | 2338 |
| 118 | Ga0207667_10002407 | 3300025949 | Bacteria | 23421 |
| 119 | Ga0207667_10020168 | 3300025949 | Bacteria | 7421 |
| 120 | Ga0207651_10004105 | 3300025960 | Bacteria | 7268 |
| 121 | Ga0207640_10132146 | 3300025981 | Bacteria | 1806 |
| 122 | Ga0207677_10114289 | 3300026023 | Unclassified | 2017 |
| 123 | Ga0207639_10030443 | 3300026041 | Bacteria | 3958 |
| 124 | Ga0207702_10013962 | 3300026078 | Bacteria | 6672 |
| 125 | Ga0207702_10042366 | 3300026078 | Bacteria | 3819 |
| 126 | Ga0207648_10129531 | 3300026089 | Bacteria | 2221 |
| 127 | Ga0207648_10513227 | 3300026089 | Bacteria | 1098 |
| 128 | Ga0207674_10019738 | 3300026116 | Bacteria | 7294 |
| 129 | Ga0207674_10522768 | 3300026116 | Bacteria | 1146 |
| 130 | Ga0207675_100148061 | 3300026118 | Unclassified | 2233 |
| 131 | Ga0207698_10001750 | 3300026142 | Bacteria | 12660 |
| 132 | Ga0207698_10327018 | 3300026142 | Bacteria | 1438 |
| 133 | Ga0207428_10000772 | 3300027907 | Bacteria | 36401 |
| 134 | Ga0268266_10000393 | 3300028379 | Bacteria | 66214 |
| 135 | Ga0268265_10032741 | 3300028380 | Bacteria | 3771 |
| 136 | Ga0268265_10342065 | 3300028380 | Bacteria | 1363 |
| 137 | Ga0268265_10693526 | 3300028380 | Bacteria | 983 |
| 138 | Ga0307515_10002076 | 3300028794 | Bacteria | 44102 |
| 139 | Ga0307513_10197905 | 3300031456 | Bacteria | 1853 |
| 140 | Ga0307408_100934899 | 3300031548 | Bacteria | 795 |
| 141 | Ga0307405_10012630 | 3300031731 | Bacteria | 4481 |
| 142 | Ga0307413_10439276 | 3300031824 | Bacteria | 1033 |
| 143 | Ga0307410_10468232 | 3300031852 | Bacteria | 1031 |
| 144 | Ga0307409_100808035 | 3300031995 | Bacteria | 946 |
| 145 | Ga0307416_100132832 | 3300032002 | Bacteria | 2245 |
| 146 | Ga0373927_0020514 | 3300035695 | Bacteria | 4334 |
| 147 | Ga0373947_0348704 | 3300035725 | Bacteria | 993 |
| 148 | Ga0373925_0005552 | 3300037068 | Bacteria | 9389 |
| 149 | Ga0395900_0032682 | 3300037418 | Bacteria | 5351 |
| 150 | Ga0395898_0002629 | 3300037466 | Bacteria | 20889 |
| 151 | Ga0395898_0072592 | 3300037466 | Bacteria | 3325 |
| 152 | Ga0395905_0064165 | 3300037471 | Bacteria | 3436 |
| 153 | Ga0395905_0101933 | 3300037471 | Bacteria | 2694 |
| 154 | Ga0395905_0203294 | 3300037471 | Bacteria | 1857 |
| 155 | Ga0395901_0000336 | 3300038443 | Bacteria | 57518 |
| 156 | Ga0439462_0117278 | 3300042015 | Bacteria | 739 |
| 157 | Ga0451577_0051677 | 3300042876 | Bacteria | 3669 |
| 158 | Ga0466972_0133845 | 3300044658 | Bacteria | 1167 |
| 159 | Ga0453683_0100771 | 3300044673 | Bacteria | 1813 |
| 160 | Ga0466965_0020154 | 3300044683 | Bacteria | 3203 |
| 161 | Ga0466966_0000029 | 3300044684 | Bacteria | 104527 |
| 162 | Ga0466966_0009135 | 3300044684 | Bacteria | 6564 |
| 163 | Ga0466966_0332089 | 3300044684 | Bacteria | 913 |
| 164 | Ga0466961_0000725 | 3300044693 | Bacteria | 20736 |
| 165 | Ga0466961_0046234 | 3300044693 | Bacteria | 2784 |
| 166 | Ga0466961_0050909 | 3300044693 | Bacteria | 2645 |
| 167 | Ga0466961_0122851 | 3300044693 | Unclassified | 1629 |
| 168 | Ga0466963_0013658 | 3300044694 | Bacteria | 4993 |
| 169 | Ga0453684_0183850 | 3300044712 | Bacteria | 2451 |
| 170 | Ga0466971_0008274 | 3300044719 | Bacteria | 4537 |
| 171 | Ga0466968_0035972 | 3300044735 | Bacteria | 2074 |
| 172 | Ga0466970_0009567 | 3300044765 | Bacteria | 4903 |
| 173 | Ga0466957_0048930 | 3300044842 | Bacteria | 2569 |
| 174 | Ga0466957_0104297 | 3300044842 | Bacteria | 1791 |
| 175 | Ga0466959_0003491 | 3300045049 | Bacteria | 10300 |
| 176 | Ga0466959_0007542 | 3300045049 | Bacteria | 7643 |
| 177 | Ga0466958_0015850 | 3300045836 | Bacteria | 4330 |
| 178 | Ga0466958_0150769 | 3300045836 | Bacteria | 1467 |
| 179 | Ga0466958_0199076 | 3300045836 | Bacteria | 1274 |
| 180 | Ga0495592_0055879 | 3300046454 | Bacteria | 2918 |
| 181 | Ga0495591_003433 | 3300046458 | Bacteria | 8187 |
| 182 | Ga0495629_0020537 | 3300046459 | Bacteria | 4716 |
| 183 | Ga0495653_0038643 | 3300046463 | Bacteria | 3746 |
| 184 | Ga0495664_0212458 | 3300046477 | Bacteria | 1172 |
| 185 | Ga0495596_0002236 | 3300046500 | Bacteria | 10539 |
| 186 | Ga0495608_0106536 | 3300046511 | Bacteria | 1804 |
| 187 | Ga0495618_0015919 | 3300046514 | Bacteria | 4591 |
| 188 | Ga0495630_0009729 | 3300046517 | Bacteria | 6915 |
| 189 | Ga0495666_0023619 | 3300046526 | Bacteria | 3040 |
| 190 | Ga0495665_0002729 | 3300046531 | Bacteria | 9527 |
| 191 | Ga0495587_0007003 | 3300046536 | Bacteria | 7322 |
| 192 | Ga0495621_0053353 | 3300046539 | Bacteria | 1451 |
| 193 | Ga0495645_0306599 | 3300046543 | Bacteria | 1035 |
| 194 | Ga0495622_0000100 | 3300046557 | Bacteria | 76484 |
| 195 | Ga0495667_0107286 | 3300046559 | Bacteria | 1805 |
| 196 | Ga0495635_0009670 | 3300046663 | Bacteria | 6743 |
| 197 | Ga0495661_0000590 | 3300046665 | Bacteria | 37515 |
| 198 | Ga0495661_0039977 | 3300046665 | Bacteria | 2911 |
| 199 | Ga0495599_0007392 | 3300046678 | Bacteria | 6659 |
| 200 | Ga0495623_0299703 | 3300046679 | Bacteria | 888 |
| 201 | Ga0495646_0045179 | 3300046680 | Bacteria | 2691 |
| 202 | Ga0495646_0375942 | 3300046680 | Bacteria | 741 |
| 203 | Ga0495613_0096523 | 3300046689 | Bacteria | 2137 |
| 204 | Ga0495671_0110930 | 3300046692 | Bacteria | 1340 |
| 205 | Ga0495581_0026560 | 3300047315 | Bacteria | 3356 |
| 206 | Ga0495604_0015604 | 3300047317 | Bacteria | 6064 |
| 207 | Ga0495674_0010813 | 3300047319 | Bacteria | 8632 |
| 208 | Ga0495672_0002523 | 3300047320 | Bacteria | 16718 |
| 209 | Ga0495676_0258460 | 3300047321 | Bacteria | 1185 |
| 210 | Ga0495680_0131258 | 3300047322 | Bacteria | 1840 |
| 211 | Ga0495679_005007 | 3300047446 | Bacteria | 5964 |
| 212 | Ga0495673_0002429 | 3300047469 | Bacteria | 13120 |
| 213 | Ga0495602_0441816 | 3300048088 | Bacteria | 919 |
| 214 | Ga0496100_0068142 | 3300048903 | Bacteria | 2365 |
| 215 | Ga0496101_0185497 | 3300048904 | Bacteria | 1603 |
| 216 | Ga0496104_0019484 | 3300048907 | Bacteria | 6209 |
| 217 | Ga0496106_0266826 | 3300048909 | Bacteria | 1370 |
| 218 | Ga0496108_0745289 | 3300048911 | Bacteria | 847 |
| 219 | Ga0496109_0011542 | 3300048912 | Bacteria | 7600 |
| 220 | Ga0496110_0047947 | 3300048913 | Bacteria | 3743 |
| 221 | Ga0496112_0058272 | 3300048915 | Bacteria | 3803 |
| 222 | Ga0496113_0041435 | 3300048916 | Bacteria | 3398 |
| 223 | Ga0496122_0000439 | 3300048925 | Bacteria | 87380 |
| 224 | Ga0496123_0000487 | 3300048926 | Bacteria | 69019 |
| 225 | Ga0496125_0007499 | 3300048928 | Bacteria | 11596 |
| 226 | Ga0496126_0002788 | 3300048929 | Bacteria | 23004 |
| 227 | Ga0495682_0011163 | 3300049460 | Bacteria | 3462 |
| 228 | Ga0501073_0028093 | 3300049589 | Unclassified | 4019 |
| 229 | Ga0501035_0068026 | 3300049822 | Bacteria | 3159 |
| 230 | Ga0501035_0531429 | 3300049822 | Unclassified | 965 |
| 231 | nmdc:mga0k408_101452_c1 | 3300050493 | Bacteria | 1697 |
| 232 | nmdc:mga07m45_18115_c1 | 3300050496 | Bacteria | 3795 |
| 233 | nmdc:mga09592_3100_c1 | 3300050508 | Bacteria | 13493 |
| 234 | nmdc:mga08y16_63_c1 | 3300050511 | Bacteria | 88815 |
| 235 | Ga0500583_0238980 | 3300053092 | Bacteria | 898 |
| 236 | Ga0500636_0012096 | 3300053177 | Bacteria | 5053 |
| 237 | Ga0466962_0112967 | 3300061719 | Bacteria | 1308 |
| 238 | Ga0466962_0192906 | 3300061719 | Bacteria | 994 |
| 239 | 2515685354 | 2515154122 | Bacteria | 8609520 |
| 240 | 2644466946 | 2643221683 | Bacteria | 5749203 |
| 241 | 2881929676 | 2881927736 | Bacteria | 3993927 |
| 242 | 2885274755 | 2885270888 | Bacteria | 9831543 |
| 243 | 2902689400 | 2902682994 | Bacteria | 8951596 |
| 244 | 2945948014 | 2945945610 | Bacteria | 5951079 |
| 245 | Ga0209258_100631 | |||
| 246 | JGI25156J39149_1000602 | |||
| 247 | JGI25154J39366_1000337 | |||
| 248 | JGI25157J39369_1000073 | |||
| 249 | JGI25157J39369_1000296 | |||
| 250 | Ga0055536_1001870 | |||
| 251 | Ga0055540_1001705 | |||
| 252 | Ga0065707_10138638 | |||
| 253 | Ga0070658_10023101 | |||
| 254 | Ga0070658_10074108 | |||
| 255 | Ga0070683_100035131 | |||
| 256 | Ga0070683_100089629 | |||
| 257 | Ga0070680_100175160 | |||
| 258 | Ga0068868_100021017 | |||
| 259 | Ga0070660_100274167 | |||
| 260 | Ga0070673_100014167 | |||
| 261 | Ga0070714_100008484 | |||
| 262 | Ga0070678_100490898 | |||
| 263 | Ga0070681_10043928 | |||
| 264 | Ga0070707_100505577 | |||
| 265 | Ga0070679_100044954 | |||
| 266 | Ga0070684_100036693 | |||
| 267 | Ga0070684_100096623 | |||
| 268 | Ga0070686_100574894 | |||
| 269 | Ga0070693_100104495 | |||
| 270 | Ga0070665_100001307 | |||
| 271 | Ga0070665_100477684 | |||
| 272 | Ga0068855_100004846 | |||
| 273 | Ga0068855_100113443 | |||
| 274 | Ga0068857_100003528 | |||
| 275 | Ga0068854_100024341 | |||
| 276 | Ga0068856_100016216 | |||
| 277 | Ga0068852_100000905 | |||
| 278 | Ga0068852_100538487 | |||
| 279 | Ga0068852_100607062 | |||
| 280 | Ga0068859_100290188 | |||
| 281 | Ga0068861_100114314 | |||
| 282 | Ga0068851_10000498 | |||
| 283 | Ga0068862_100018288 | |||
| 284 | Ga0068862_100318446 | |||
| 285 | Ga0081455_10001215 | |||
| 286 | Ga0070717_10034466 | |||
| 287 | Ga0075366_10033235 | |||
| 288 | Ga0097621_100296653 | |||
| 289 | Ga0075370_10034645 | |||
| 290 | Ga0075428_100000140 | |||
| 291 | Ga0075429_100006229 | |||
| 292 | Ga0097620_100290183 | |||
| 293 | Ga0105240_10008383 | |||
| 294 | Ga0105240_10023776 | |||
| 295 | Ga0105240_10031336 | |||
| 296 | Ga0105240_10045107 | |||
| 297 | Ga0105240_10384079 | |||
| 298 | Ga0105240_10401420 | |||
| 299 | Ga0105240_10668150 | |||
| 300 | Ga0111539_10000094 | |||
| 301 | Ga0105243_10005636 | |||
| 302 | Ga0105243_10016158 | |||
| 303 | Ga0105242_10871118 | |||
| 304 | Ga0105248_10311206 | |||
| 305 | Ga0105237_10218073 | |||
| 306 | Ga0105238_10413740 | |||
| 307 | Ga0105238_10512121 | |||
| 308 | Ga0105238_10934061 | |||
| 309 | Ga0105239_10131755 | |||
| 310 | Ga0105239_10191753 | |||
| 311 | Ga0105239_11487041 | |||
| 312 | Ga0154012_137111 | |||
| 313 | Ga0157370_10192773 | |||
| 314 | Ga0157369_10002660 | |||
| 315 | Ga0157369_10018722 | |||
| 316 | Ga0157369_10109624 | |||
| 317 | Ga0157374_10056021 | |||
| 318 | Ga0157374_10385555 | |||
| 319 | Ga0163162_10472470 | |||
| 320 | Ga0163163_10425854 | |||
| 321 | Ga0157379_10022359 | |||
| 322 | Ga0157376_10826342 | |||
| 323 | Ga0206354_11009918 | |||
| 324 | Ga0206353_10312276 | |||
| 325 | Ga0224712_10021775 | |||
| 326 | Ga0209646_1000067 | |||
| 327 | Ga0209026_1000033 | |||
| 328 | Ga0209677_100087 | |||
| 329 | Ga0209759_1000024 | |||
| 330 | Ga0209759_1006371 | |||
| 331 | Ga0209759_1013266 | |||
| 332 | Ga0209676_1000581 | |||
| 333 | Ga0209051_1000496 | |||
| 334 | Ga0209257_1005292 | |||
| 335 | Ga0207656_10004245 | |||
| 336 | Ga0207699_10156585 | |||
| 337 | Ga0207705_10092716 | |||
| 338 | Ga0207654_10044062 | |||
| 339 | Ga0207707_10151837 | |||
| 340 | Ga0207695_10024554 | |||
| 341 | Ga0207695_10033640 | |||
| 342 | Ga0207695_10051449 | |||
| 343 | Ga0207695_10096493 | |||
| 344 | Ga0207695_10206079 | |||
| 345 | Ga0207695_10257123 | |||
| 346 | Ga0207695_10389233 | |||
| 347 | Ga0207660_10037844 | |||
| 348 | Ga0207657_10122391 | |||
| 349 | Ga0207652_10033491 | |||
| 350 | Ga0207646_10404351 | |||
| 351 | Ga0207694_10379965 | |||
| 352 | Ga0207694_10424314 | |||
| 353 | Ga0207659_10233709 | |||
| 354 | Ga0207700_10260761 | |||
| 355 | Ga0207700_10474425 | |||
| 356 | Ga0207664_10021509 | |||
| 357 | Ga0207709_10000284 | |||
| 358 | Ga0207691_10315509 | |||
| 359 | Ga0207711_10176756 | |||
| 360 | Ga0207661_10074529 | |||
| 361 | Ga0207661_10109045 | |||
| 362 | Ga0207667_10002407 | |||
| 363 | Ga0207667_10020168 | |||
| 364 | Ga0207651_10004105 | |||
| 365 | Ga0207640_10132146 | |||
| 366 | Ga0207677_10114289 | |||
| 367 | Ga0207639_10030443 | |||
| 368 | Ga0207702_10013962 | |||
| 369 | Ga0207702_10042366 | |||
| 370 | Ga0207648_10129531 | |||
| 371 | Ga0207648_10513227 | |||
| 372 | Ga0207674_10019738 | |||
| 373 | Ga0207674_10522768 | |||
| 374 | Ga0207675_100148061 | |||
| 375 | Ga0207698_10001750 | |||
| 376 | Ga0207698_10327018 | |||
| 377 | Ga0207428_10000772 | |||
| 378 | Ga0268266_10000393 | |||
| 379 | Ga0268265_10032741 | |||
| 380 | Ga0268265_10342065 | |||
| 381 | Ga0268265_10693526 | |||
| 382 | Ga0307515_10002076 | |||
| 383 | Ga0307513_10197905 | |||
| 384 | Ga0307408_100934899 | |||
| 385 | Ga0307405_10012630 | |||
| 386 | Ga0307413_10439276 | |||
| 387 | Ga0307410_10468232 | |||
| 388 | Ga0307409_100808035 | |||
| 389 | Ga0307416_100132832 | |||
| 390 | Ga0373927_0020514 | |||
| 391 | Ga0373947_0348704 | |||
| 392 | Ga0373925_0005552 | |||
| 393 | Ga0395900_0032682 | |||
| 394 | Ga0395898_0002629 | |||
| 395 | Ga0395898_0072592 | |||
| 396 | Ga0395905_0064165 | |||
| 397 | Ga0395905_0101933 | |||
| 398 | Ga0395905_0203294 | |||
| 399 | Ga0395901_0000336 | |||
| 400 | Ga0439462_0117278 | |||
| 401 | Ga0451577_0051677 | |||
| 402 | Ga0466972_0133845 | |||
| 403 | Ga0453683_0100771 | |||
| 404 | Ga0466965_0020154 | |||
| 405 | Ga0466966_0000029 | |||
| 406 | Ga0466966_0009135 | |||
| 407 | Ga0466966_0332089 | |||
| 408 | Ga0466961_0000725 | |||
| 409 | Ga0466961_0046234 | |||
| 410 | Ga0466961_0050909 | |||
| 411 | Ga0466961_0122851 | |||
| 412 | Ga0466963_0013658 | |||
| 413 | Ga0453684_0183850 | |||
| 414 | Ga0466971_0008274 | |||
| 415 | Ga0466968_0035972 | |||
| 416 | Ga0466970_0009567 | |||
| 417 | Ga0466957_0048930 | |||
| 418 | Ga0466957_0104297 | |||
| 419 | Ga0466959_0003491 | |||
| 420 | Ga0466959_0007542 | |||
| 421 | Ga0466958_0015850 | |||
| 422 | Ga0466958_0150769 | |||
| 423 | Ga0466958_0199076 | |||
| 424 | Ga0495592_0055879 | |||
| 425 | Ga0495591_003433 | |||
| 426 | Ga0495629_0020537 | |||
| 427 | Ga0495653_0038643 | |||
| 428 | Ga0495664_0212458 | |||
| 429 | Ga0495596_0002236 | |||
| 430 | Ga0495608_0106536 | |||
| 431 | Ga0495618_0015919 | |||
| 432 | Ga0495630_0009729 | |||
| 433 | Ga0495666_0023619 | |||
| 434 | Ga0495665_0002729 | |||
| 435 | Ga0495587_0007003 | |||
| 436 | Ga0495621_0053353 | |||
| 437 | Ga0495645_0306599 | |||
| 438 | Ga0495622_0000100 | |||
| 439 | Ga0495667_0107286 | |||
| 440 | Ga0495635_0009670 | |||
| 441 | Ga0495661_0000590 | |||
| 442 | Ga0495661_0039977 | |||
| 443 | Ga0495599_0007392 | |||
| 444 | Ga0495623_0299703 | |||
| 445 | Ga0495646_0045179 | |||
| 446 | Ga0495646_0375942 | |||
| 447 | Ga0495613_0096523 | |||
| 448 | Ga0495671_0110930 | |||
| 449 | Ga0495581_0026560 | |||
| 450 | Ga0495604_0015604 | |||
| 451 | Ga0495674_0010813 | |||
| 452 | Ga0495672_0002523 | |||
| 453 | Ga0495676_0258460 | |||
| 454 | Ga0495680_0131258 | |||
| 455 | Ga0495679_005007 | |||
| 456 | Ga0495673_0002429 | |||
| 457 | Ga0495602_0441816 | |||
| 458 | Ga0496100_0068142 | |||
| 459 | Ga0496101_0185497 | |||
| 460 | Ga0496104_0019484 | |||
| 461 | Ga0496106_0266826 | |||
| 462 | Ga0496108_0745289 | |||
| 463 | Ga0496109_0011542 | |||
| 464 | Ga0496110_0047947 | |||
| 465 | Ga0496112_0058272 | |||
| 466 | Ga0496113_0041435 | |||
| 467 | Ga0496122_0000439 | |||
| 468 | Ga0496123_0000487 | |||
| 469 | Ga0496125_0007499 | |||
| 470 | Ga0496126_0002788 | |||
| 471 | Ga0495682_0011163 | |||
| 472 | Ga0501073_0028093 | |||
| 473 | Ga0501035_0068026 | |||
| 474 | Ga0501035_0531429 | |||
| 475 | nmdc:mga0k408_101452_c1 | |||
| 476 | nmdc:mga07m45_18115_c1 | |||
| 477 | nmdc:mga09592_3100_c1 | |||
| 478 | nmdc:mga08y16_63_c1 | |||
| 479 | Ga0500583_0238980 | |||
| 480 | Ga0500636_0012096 | |||
| 481 | Ga0466962_0112967 | |||
| 482 | Ga0466962_0192906 | |||
| 483 | 2515685354 | |||
| 484 | 2644466946 | |||
| 485 | 2881929676 | |||
| 486 | 2885274755 | |||
| 487 | 2902689400 | |||
| 488 | 2945948014 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 6jhe-assembly1.cif.gz_A | crystal structure of bacillus subtilis sigw domain 4 in complexed with -35 element dna | 0.9568 | 152 | 199 |
| 4go1-assembly1.cif.gz_A-2 | crystal structure of full length transcription repressor lsrr from e. coli. | 0.9449 | 155 | 188 |
| 5fgm-assembly1.cif.gz_A | streptomyces coelicolor sigr region 4 | 0.9414 | 145 | 202 |
| 3hug-assembly2.cif.gz_E | crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl | 0.9384 | 135 | 204 |
| 3hug-assembly6.cif.gz_M | crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl | 0.9244 | 131 | 201 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 3vepE00 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9579 | 147 | 200 | 1.10.10.10 |
| 3vepH00 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9575 | 147 | 201 | 1.10.10.10 |
| 3hugO00 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9445 | 136 | 201 | 1.10.10.10 |
| af_P9WGH7_10_94_1.10.1740.10 | Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif | 0.944 | 20 | 99 | 1.10.1740.10 |
| 3hugG00 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9406 | 135 | 201 | 1.10.10.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7V3D3I0-F1-model_v4 | RNA polymerase sigma factor | 0.5389 | 16 | 183 |
GO:0003677
GO:0006352 GO:0016987 |
| AF-A0A7V3D3I0-F1-model_v4 | RNA polymerase sigma factor | 0.5208 | 16 | 183 |
GO:0003677
GO:0006352 GO:0016987 |
| AF-A0A4R2EAE1-F1-model_v4 | RNA polymerase sigma factor | 0.5184 | 15 | 204 |
GO:0003677
GO:0006352 GO:0016987 |
| AF-A0A168S994-F1-model_v4 | deleted | 0.5159 | 1 | 229 |
|
| AF-A0A2E8GZZ1-F1-model_v4 | RNA polymerase sigma factor | 0.5124 | 15 | 232 |
GO:0003677
GO:0006352 GO:0016987 |