F357429

General Info

Members Datasets Scaffolds Average Seq Length
245 162 490 1030

Family's Representative Sequence

Representative Sequence 3300025924|Ga0207694_10013720|Ga0207694_100137203
Length 1054
Sequence MNDTGGRFGPQPSQPPHHQRSFAISAWAIKNPIPVAVLFIGLILAGLISYMGLPIKQYPNIQFPMIAVTVTQNGAAPGEIETQITRPVEDALAGVTGVKTVQSTVTQGVSTTSMQFEIGENLQKKVDEVRSKVAQARAILPRDIDEPIVQQIEVDEAAPILTYAVTAPGMSDDELSWFIDDTISRTLQGAKGVAQITRVGGVSREINVVVDPDRLAARGLTATQVNNALRGFQTDAPGGRVNVGGREQTLRIYSNTTSVEALRNLNIPIGAGRYVKLADVADIGDGASEVRGFARLNGHPVVGFQVSKTKEASDVVTEDAVAKAVAGLEKTHPGVKFTKIFSSVTNTRETFKATQHVLGEGMLLAALVVFFFLRDWRATAMTAVAMPISLIPTFFVMKLIGFSLNMISLLALTLVVGILVDDAIVEIENIEKRVERGQRPYQAALEGADAIGLAVVATTMAIVVVFTPVSFMPGIPGQFFREFGLTVSVAVLFSLLTARLVTPLMAAYFLKPKAHARERKPFTGRYRRVLEWALRHRIVAAILGTVLFFGSLGLLFFLPQGFQPASDPDFMYVDIQGPPGASVADMEDTARRINDLFKGQPEVTNVFIQIGSTVSSFGPGMTGAGGSDLRSGTATLLLDPHRHATGDQIKARLRDGLRAIPDARLSFLDFQGASGFQQILTGDNPQNLQFAAHELEKEMRTLPQLADPHPSKPPEAPEIVIRPKPQEAARLGVSSDTLATIVRVATVGDIDANVAKFNEGERRIPIRVRLPQYARADIGRIRSLRVPTAAGGSTTLDSVADIYFQAGPARIDRLNRERQMTVRAELNGVEMGQAQRAVNNLPIMKHLPAGVRPAAIGNQQAMQEMFGGFLVAIFAGVSMIFGVQVLLFRSFFKPAVILLALPLAVGGAFVGLLAFNLSLSIPSLIGFLMLLGLAAKNSILLVEYAIEREREGYSQHEAIIEACRERSRPIIMTTVAMAAGMLPTALAIEKGSEFRQPMAVAVIGGLITSTMLSLVLIPVFYRFVDDFEQWLTPRLARLITPREAVLEPAPEDRF

Samples

Sample ID Description Type Environment
1 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
3 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
4 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
21 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
24 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
29 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
30 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
31 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
32 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
33 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
34 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
36 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
37 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
39 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
61 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
62 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
63 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
64 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
65 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
66 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
67 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
68 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
69 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
75 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
76 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
77 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
78 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
79 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
80 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
81 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
82 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
83 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
84 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
85 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
86 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
87 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
88 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
89 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
90 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
91 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
92 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
93 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
94 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
95 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
96 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
97 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
98 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
99 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
100 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
101 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
102 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
103 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
104 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
105 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
106 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
107 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
108 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
109 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
112 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
113 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
114 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
115 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
116 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
117 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
118 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
119 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
120 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
121 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
122 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
123 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
124 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
125 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
126 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
127 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
128 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
129 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
130 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
131 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
132 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
133 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere
134 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
135 2510917020 Caulobacter sp. AP07 Isolate Rhizosphere
136 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
137 2582581279 Caulobacter henricii OK261 Isolate Rhizosphere
138 2582581280 Caulobacter henricii CF287 Isolate Rhizosphere
139 2582581293 Caulobacter henricii YR570 Isolate Rhizosphere
140 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
141 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
142 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
143 2643221583 Caulobacter sp. Root655 Isolate Unclassified
144 2643221584 Caulobacter sp. Root656 Isolate Unclassified
145 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
146 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
147 2643221640 Caulobacter sp. Root342 Isolate Unclassified
148 2643221642 Caulobacter sp. Root343 Isolate Unclassified
149 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
150 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
151 2643221691 Caulobacter sp. Root487D2Y Isolate Unclassified
152 2791355048 Caulobacter flavus CGMCC1 15093 Isolate Rhizosphere
153 2818991435 Caulobacter henricii 536 Isolate Unclassified
154 2818991454 Caulobacter rhizosphaerae 3260 Isolate Rhizosphere
155 2843744320 Caulobacter flavus RHGG3 Isolate Unclassified
156 2849560528 Caulobacter zeae 410 Isolate Unclassified
157 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
158 2851153111 Caulobacter radicis 736 Isolate Unclassified
159 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
160 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
161 2898329390 Caulobacter sp. 602-2 Isolate Rhizosphere
162 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.49
Metatranscriptomes 0
Isolates 15.51

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.63
Nodule 0
Rhizoplane 2.45
Rhizosphere 61.22
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207694_10013720 3300025924 Bacteria 6106
2 Ga0055536_1000288 3300003781 Bacteria 38152
3 Ga0055531_10000551 3300003794 Bacteria 33094
4 Ga0065165_1001209 3300005262 Bacteria 29779
5 Ga0065165_1001412 3300005262 Bacteria 26121
6 Ga0070658_10003402 3300005327 Bacteria 13083
7 Ga0070670_100000007 3300005331 Bacteria 318672
8 Ga0070670_100005007 3300005331 Bacteria 11147
9 Ga0070680_100002137 3300005336 Bacteria 14611
10 Ga0070668_100000293 3300005347 Bacteria 32901
11 Ga0070668_100000622 3300005347 Bacteria 23828
12 Ga0070668_100001654 3300005347 Bacteria 16174
13 Ga0070669_100004581 3300005353 Bacteria 9981
14 Ga0070659_100006611 3300005366 Bacteria 8376
15 Ga0070667_100000155 3300005367 Bacteria 85527
16 Ga0070667_100004833 3300005367 Bacteria 11289
17 Ga0070667_100035958 3300005367 Bacteria 4150
18 Ga0070681_10005369 3300005458 Bacteria 12372
19 Ga0070665_100000517 3300005548 Bacteria 54900
20 Ga0070665_100000837 3300005548 Bacteria 40130
21 Ga0070665_100004067 3300005548 Bacteria 15391
22 Ga0070665_100005544 3300005548 Bacteria 12979
23 Ga0070665_100040643 3300005548 Bacteria 4674
24 Ga0070665_100060472 3300005548 Bacteria 3797
25 Ga0068855_100015052 3300005563 Bacteria 9314
26 Ga0068859_100000230 3300005617 Bacteria 55064
27 Ga0068864_100000067 3300005618 Bacteria 115834
28 Ga0068864_100000128 3300005618 Bacteria 73813
29 Ga0068863_100000237 3300005841 Bacteria 58657
30 Ga0068863_100000360 3300005841 Bacteria 46300
31 Ga0068858_100000020 3300005842 Bacteria 175896
32 Ga0068858_100002621 3300005842 Bacteria 18119
33 Ga0068860_100000047 3300005843 Bacteria 213287
34 Ga0068860_100000531 3300005843 Bacteria 46615
35 Ga0068860_100021121 3300005843 Bacteria 6304
36 Ga0068862_100007038 3300005844 Bacteria 9340
37 Ga0068862_100011934 3300005844 Bacteria 7178
38 Ga0068862_100012144 3300005844 Bacteria 7119
39 Ga0075368_10001002 3300006042 Bacteria 8831
40 Ga0075367_10011700 3300006178 Bacteria 4656
41 Ga0068865_100003736 3300006881 Bacteria 9144
42 Ga0097620_100000230 3300006931 Bacteria 55064
43 Ga0105240_10000970 3300009093 Bacteria 51122
44 Ga0105248_10000517 3300009177 Bacteria 43853
45 Ga0105248_10007113 3300009177 Bacteria 12260
46 Ga0105248_10014640 3300009177 Bacteria 8630
47 Ga0105248_10021758 3300009177 Bacteria 7105
48 Ga0105238_10016976 3300009551 Bacteria 7388
49 Ga0105249_10003041 3300009553 Bacteria 14470
50 Ga0163163_10004712 3300014325 Bacteria 11685
51 Ga0157379_10005276 3300014968 Bacteria 11096
52 Ga0209026_1001805 3300025250 Bacteria 8823
53 Ga0209565_1000794 3300025263 Bacteria 18213
54 Ga0209673_1002253 3300025273 Bacteria 13894
55 Ga0209676_1000177 3300025292 Bacteria 151589
56 Ga0209676_1000247 3300025292 Bacteria 115814
57 Ga0209564_1001677 3300025295 Bacteria 21114
58 Ga0209758_1000246 3300025297 Bacteria 111041
59 Ga0209050_1000057 3300025298 Bacteria 326289
60 Ga0209050_1001701 3300025298 Bacteria 21997
61 Ga0209256_1006960 3300025299 Bacteria 5761
62 Ga0209051_1001237 3300025303 Bacteria 22915
63 Ga0209051_1012818 3300025303 Bacteria 4032
64 Ga0209257_1000159 3300025304 Bacteria 178767
65 Ga0209257_1000914 3300025304 Bacteria 41061
66 Ga0207705_10001024 3300025909 Bacteria 22688
67 Ga0207695_10000572 3300025913 Bacteria 75360
68 Ga0207695_10003712 3300025913 Bacteria 21257
69 Ga0207660_10021463 3300025917 Bacteria 4342
70 Ga0207657_10000381 3300025919 Bacteria 46762
71 Ga0207652_10003802 3300025921 Bacteria 12375
72 Ga0207650_10000030 3300025925 Bacteria 235824
73 Ga0207690_10001039 3300025932 Bacteria 17769
74 Ga0207704_10003198 3300025938 Bacteria 7414
75 Ga0207711_10001000 3300025941 Bacteria 27099
76 Ga0207711_10005088 3300025941 Bacteria 11145
77 Ga0207667_10004668 3300025949 Bacteria 16782
78 Ga0207667_10030357 3300025949 Bacteria 5848
79 Ga0207712_10001702 3300025961 Bacteria 14771
80 Ga0207668_10000010 3300025972 Bacteria 185249
81 Ga0207668_10000108 3300025972 Bacteria 59119
82 Ga0207658_10000265 3300025986 Bacteria 55108
83 Ga0207703_10000082 3300026035 Bacteria 110579
84 Ga0207641_10000007 3300026088 Bacteria 441443
85 Ga0207641_10009320 3300026088 Bacteria 8099
86 Ga0207676_10000183 3300026095 Bacteria 55220
87 Ga0207676_10000241 3300026095 Bacteria 47707
88 Ga0268266_10000003 3300028379 Bacteria 1701703
89 Ga0268266_10001015 3300028379 Bacteria 35377
90 Ga0268266_10002012 3300028379 Bacteria 22687
91 Ga0268266_10028991 3300028379 Bacteria 4704
92 Ga0268266_10050835 3300028379 Bacteria 3557
93 Ga0268265_10005898 3300028380 Bacteria 8347
94 Ga0268264_10000008 3300028381 Bacteria 773387
95 Ga0268264_10000125 3300028381 Bacteria 186416
96 Ga0268264_10024887 3300028381 Bacteria 4891
97 Ga0307515_10014431 3300028794 Bacteria 14647
98 Ga0307515_10048773 3300028794 Bacteria 6394
99 Ga0265338_10025810 3300028800 Bacteria 5947
100 Ga0265327_10000280 3300031251 Bacteria 100757
101 Ga0307513_10000077 3300031456 Bacteria 134167
102 Ga0307513_10005907 3300031456 Bacteria 16067
103 Ga0265313_10003190 3300031595 Bacteria 13509
104 Ga0307516_10000001 3300031730 Bacteria 510338
105 Ga0307414_10000203 3300032004 Bacteria 39859
106 Ga0373927_0003319 3300035695 Bacteria 11573
107 Ga0373925_0000003 3300037068 Bacteria 362401
108 Ga0395899_0000347 3300037312 Bacteria 57058
109 Ga0395900_0000008 3300037418 Bacteria 480459
110 Ga0395900_0023432 3300037418 Bacteria 6319
111 Ga0395900_0039394 3300037418 Bacteria 4869
112 Ga0395898_0038880 3300037466 Bacteria 4712
113 Ga0395905_0001727 3300037471 Bacteria 25583
114 Ga0395905_0002513 3300037471 Bacteria 20268
115 Ga0395901_0000008 3300038443 Bacteria 495962
116 Ga0395901_0036288 3300038443 Bacteria 5094
117 Ga0453684_0016611 3300044712 Bacteria 11486
118 Ga0495627_000656 3300046453 Bacteria 26634
119 Ga0495590_0001017 3300046457 Bacteria 12347
120 Ga0495638_0000265 3300046460 Bacteria 70712
121 Ga0495638_0001059 3300046460 Bacteria 26935
122 Ga0495638_0002993 3300046460 Bacteria 13491
123 Ga0495638_0003567 3300046460 Bacteria 12186
124 Ga0495638_0006381 3300046460 Bacteria 8588
125 Ga0495638_0018436 3300046460 Bacteria 4635
126 Ga0495650_0000068 3300046471 Bacteria 266671
127 Ga0495583_0000002 3300046506 Bacteria 782521
128 Ga0495610_0002359 3300046512 Bacteria 15958
129 Ga0495616_0000039 3300046513 Bacteria 123105
130 Ga0495616_0000782 3300046513 Bacteria 23235
131 Ga0495631_0004403 3300046518 Bacteria 7504
132 Ga0495631_0007979 3300046518 Bacteria 5354
133 Ga0495632_0000766 3300046519 Bacteria 28794
134 Ga0495632_0006424 3300046519 Bacteria 7560
135 Ga0495637_0009885 3300046520 Bacteria 4640
136 Ga0495648_0001203 3300046524 Bacteria 25919
137 Ga0495654_0000051 3300046530 Bacteria 145932
138 Ga0495597_0015939 3300046542 Bacteria 3554
139 Ga0495622_0000720 3300046557 Bacteria 18691
140 Ga0495633_0002324 3300046558 Bacteria 13533
141 Ga0495668_0000026 3300046616 Bacteria 297287
142 Ga0495668_0005284 3300046616 Bacteria 8830
143 Ga0495625_0000198 3300046660 Bacteria 95530
144 Ga0495625_0001318 3300046660 Bacteria 30872
145 Ga0495625_0024132 3300046660 Bacteria 4634
146 Ga0495669_0000002 3300046684 Bacteria 282777
147 Ga0495613_0002180 3300046689 Bacteria 14822
148 Ga0495589_0003296 3300046794 Bacteria 8761
149 Ga0495672_0008681 3300047320 Bacteria 7459
150 Ga0495679_005798 3300047446 Bacteria 5435
151 Ga0495673_0000204 3300047469 Bacteria 89887
152 Ga0495673_0000225 3300047469 Bacteria 83589
153 Ga0495673_0000287 3300047469 Bacteria 67754
154 Ga0495673_0002746 3300047469 Bacteria 12052
155 Ga0495673_0007304 3300047469 Bacteria 6373
156 Ga0495686_0000805 3300047472 Bacteria 40626
157 Ga0495686_0008732 3300047472 Bacteria 7393
158 Ga0496102_0036699 3300048905 Bacteria 4417
159 Ga0496106_0004033 3300048909 Bacteria 10970
160 Ga0496107_0000038 3300048910 Bacteria 78077
161 Ga0496115_0000126 3300048918 Bacteria 69044
162 Ga0496115_0002920 3300048918 Bacteria 12337
163 Ga0496115_0041645 3300048918 Bacteria 3656
164 Ga0496118_0004235 3300048921 Bacteria 17215
165 Ga0496121_0000035 3300048924 Bacteria 374316
166 Ga0496121_0013543 3300048924 Bacteria 8747
167 Ga0496122_0003952 3300048925 Bacteria 18941
168 Ga0496123_0005109 3300048926 Bacteria 13396
169 Ga0496125_0007293 3300048928 Bacteria 11774
170 Ga0495678_003384 3300049459 Bacteria 9924
171 Ga0501034_0004630 3300049571 Bacteria 15240
172 Ga0501047_0005059 3300049581 Bacteria 12376
173 Ga0501044_0045803 3300049823 Bacteria 4530
174 nmdc:mga00v17_254_c1 3300050491 Bacteria 31422
175 nmdc:mga06z11_8727_c1 3300050494 Bacteria 4245
176 Ga0500578_0001673 3300053086 Bacteria 21300
177 Ga0500643_000508 3300053087 Bacteria 27781
178 Ga0500643_001156 3300053087 Bacteria 15725
179 Ga0500643_007092 3300053087 Bacteria 4587
180 Ga0500644_0000082 3300053088 Bacteria 58141
181 Ga0500644_0002447 3300053088 Bacteria 4640
182 Ga0500647_0009008 3300053091 Bacteria 4359
183 Ga0500651_0013616 3300053093 Bacteria 4961
184 Ga0500641_0000463 3300053096 Bacteria 14796
185 Ga0500641_0000763 3300053096 Bacteria 11684
186 Ga0500562_001545 3300053108 Bacteria 5697
187 Ga0500562_002754 3300053108 Bacteria 4372
188 Ga0500572_000275 3300053111 Bacteria 18663
189 Ga0500594_0000315 3300053118 Bacteria 10818
190 Ga0500595_004694 3300053119 Bacteria 6071
191 Ga0500608_000072 3300053122 Bacteria 43162
192 Ga0500608_000981 3300053122 Bacteria 10243
193 Ga0500618_000734 3300053125 Bacteria 18733
194 Ga0500658_0000758 3300053134 Bacteria 13308
195 Ga0500559_0000279 3300053136 Bacteria 39412
196 Ga0500559_0000304 3300053136 Bacteria 37380
197 Ga0500564_000075 3300053138 Bacteria 25716
198 Ga0500577_0001493 3300053142 Bacteria 5966
199 Ga0500590_009733 3300053148 Bacteria 4840
200 Ga0500622_0000167 3300053156 Bacteria 70349
201 Ga0500622_0000172 3300053156 Bacteria 69427
202 Ga0500622_0001556 3300053156 Bacteria 18128
203 Ga0500645_000909 3300053730 Bacteria 17047
204 Ga0500645_004104 3300053730 Bacteria 5693
205 Ga0500609_000224 3300053731 Bacteria 8132
206 Ga0500609_000454 3300053731 Bacteria 6091
207 Ga0500596_002679 3300053735 Bacteria 3493
208 2511125429 2510917020 Bacteria 5657507
209 2524609772 2524023250 Bacteria 5457705
210 2585150345 2582581279 Bacteria 4980720
211 2585151784 2582581280 Bacteria 5994497
212 2585155492 2582581280 Bacteria 5994497
213 2585194731 2582581293 Bacteria 5907401
214 2585199315 2582581293 Bacteria 5907401
215 2587917361 2585428106 Bacteria 5179711
216 2587918295 2585428106 Bacteria 5179711
217 2643748411 2643221545 Bacteria 5083237
218 2643778416 2643221552 Bacteria 5708754
219 2643782391 2643221552 Bacteria 5708754
220 2643924167 2643221583 Bacteria 5218014
221 2643927833 2643221584 Bacteria 5511711
222 2643930797 2643221584 Bacteria 5511711
223 2643998906 2643221598 Bacteria 4578346
224 2644087068 2643221614 Bacteria 4260023
225 2644227118 2643221640 Bacteria 5258820
226 2644227813 2643221640 Bacteria 5258820
227 2644233415 2643221642 Bacteria 5357871
228 2644233926 2643221642 Bacteria 5357871
229 2644342022 2643221661 Bacteria 4267604
230 2644368309 2643221666 Bacteria 4265935
231 2644510084 2643221691 Bacteria 5093099
232 2792459057 2791355048 Bacteria 5832535
233 2792462067 2791355048 Bacteria 5832535
234 2819536297 2818991435 Bacteria 5433759
235 2819540133 2818991435 Bacteria 5433759
236 2819649171 2818991454 Bacteria 5563326
237 2843745972 2843744320 Bacteria 5659202
238 2843746571 2843744320 Bacteria 5659202
239 2849563682 2849560528 Bacteria 5393480
240 2849576010 2849573788 Bacteria 5421256
241 2851153389 2851153111 Bacteria 5542585
242 2857505490 2857504554 Bacteria 5369913
243 2884962246 2884960567 Bacteria 5437054
244 2898331562 2898329390 Bacteria 5168154
245 2928533040 2928531327 Bacteria 5101314
246 Ga0207694_10013720
247 Ga0055536_1000288
248 Ga0055531_10000551
249 Ga0065165_1001209
250 Ga0065165_1001412
251 Ga0070658_10003402
252 Ga0070670_100000007
253 Ga0070670_100005007
254 Ga0070680_100002137
255 Ga0070668_100000293
256 Ga0070668_100000622
257 Ga0070668_100001654
258 Ga0070669_100004581
259 Ga0070659_100006611
260 Ga0070667_100000155
261 Ga0070667_100004833
262 Ga0070667_100035958
263 Ga0070681_10005369
264 Ga0070665_100000517
265 Ga0070665_100000837
266 Ga0070665_100004067
267 Ga0070665_100005544
268 Ga0070665_100040643
269 Ga0070665_100060472
270 Ga0068855_100015052
271 Ga0068859_100000230
272 Ga0068864_100000067
273 Ga0068864_100000128
274 Ga0068863_100000237
275 Ga0068863_100000360
276 Ga0068858_100000020
277 Ga0068858_100002621
278 Ga0068860_100000047
279 Ga0068860_100000531
280 Ga0068860_100021121
281 Ga0068862_100007038
282 Ga0068862_100011934
283 Ga0068862_100012144
284 Ga0075368_10001002
285 Ga0075367_10011700
286 Ga0068865_100003736
287 Ga0097620_100000230
288 Ga0105240_10000970
289 Ga0105248_10000517
290 Ga0105248_10007113
291 Ga0105248_10014640
292 Ga0105248_10021758
293 Ga0105238_10016976
294 Ga0105249_10003041
295 Ga0163163_10004712
296 Ga0157379_10005276
297 Ga0209026_1001805
298 Ga0209565_1000794
299 Ga0209673_1002253
300 Ga0209676_1000177
301 Ga0209676_1000247
302 Ga0209564_1001677
303 Ga0209758_1000246
304 Ga0209050_1000057
305 Ga0209050_1001701
306 Ga0209256_1006960
307 Ga0209051_1001237
308 Ga0209051_1012818
309 Ga0209257_1000159
310 Ga0209257_1000914
311 Ga0207705_10001024
312 Ga0207695_10000572
313 Ga0207695_10003712
314 Ga0207660_10021463
315 Ga0207657_10000381
316 Ga0207652_10003802
317 Ga0207650_10000030
318 Ga0207690_10001039
319 Ga0207704_10003198
320 Ga0207711_10001000
321 Ga0207711_10005088
322 Ga0207667_10004668
323 Ga0207667_10030357
324 Ga0207712_10001702
325 Ga0207668_10000010
326 Ga0207668_10000108
327 Ga0207658_10000265
328 Ga0207703_10000082
329 Ga0207641_10000007
330 Ga0207641_10009320
331 Ga0207676_10000183
332 Ga0207676_10000241
333 Ga0268266_10000003
334 Ga0268266_10001015
335 Ga0268266_10002012
336 Ga0268266_10028991
337 Ga0268266_10050835
338 Ga0268265_10005898
339 Ga0268264_10000008
340 Ga0268264_10000125
341 Ga0268264_10024887
342 Ga0307515_10014431
343 Ga0307515_10048773
344 Ga0265338_10025810
345 Ga0265327_10000280
346 Ga0307513_10000077
347 Ga0307513_10005907
348 Ga0265313_10003190
349 Ga0307516_10000001
350 Ga0307414_10000203
351 Ga0373927_0003319
352 Ga0373925_0000003
353 Ga0395899_0000347
354 Ga0395900_0000008
355 Ga0395900_0023432
356 Ga0395900_0039394
357 Ga0395898_0038880
358 Ga0395905_0001727
359 Ga0395905_0002513
360 Ga0395901_0000008
361 Ga0395901_0036288
362 Ga0453684_0016611
363 Ga0495627_000656
364 Ga0495590_0001017
365 Ga0495638_0000265
366 Ga0495638_0001059
367 Ga0495638_0002993
368 Ga0495638_0003567
369 Ga0495638_0006381
370 Ga0495638_0018436
371 Ga0495650_0000068
372 Ga0495583_0000002
373 Ga0495610_0002359
374 Ga0495616_0000039
375 Ga0495616_0000782
376 Ga0495631_0004403
377 Ga0495631_0007979
378 Ga0495632_0000766
379 Ga0495632_0006424
380 Ga0495637_0009885
381 Ga0495648_0001203
382 Ga0495654_0000051
383 Ga0495597_0015939
384 Ga0495622_0000720
385 Ga0495633_0002324
386 Ga0495668_0000026
387 Ga0495668_0005284
388 Ga0495625_0000198
389 Ga0495625_0001318
390 Ga0495625_0024132
391 Ga0495669_0000002
392 Ga0495613_0002180
393 Ga0495589_0003296
394 Ga0495672_0008681
395 Ga0495679_005798
396 Ga0495673_0000204
397 Ga0495673_0000225
398 Ga0495673_0000287
399 Ga0495673_0002746
400 Ga0495673_0007304
401 Ga0495686_0000805
402 Ga0495686_0008732
403 Ga0496102_0036699
404 Ga0496106_0004033
405 Ga0496107_0000038
406 Ga0496115_0000126
407 Ga0496115_0002920
408 Ga0496115_0041645
409 Ga0496118_0004235
410 Ga0496121_0000035
411 Ga0496121_0013543
412 Ga0496122_0003952
413 Ga0496123_0005109
414 Ga0496125_0007293
415 Ga0495678_003384
416 Ga0501034_0004630
417 Ga0501047_0005059
418 Ga0501044_0045803
419 nmdc:mga00v17_254_c1
420 nmdc:mga06z11_8727_c1
421 Ga0500578_0001673
422 Ga0500643_000508
423 Ga0500643_001156
424 Ga0500643_007092
425 Ga0500644_0000082
426 Ga0500644_0002447
427 Ga0500647_0009008
428 Ga0500651_0013616
429 Ga0500641_0000463
430 Ga0500641_0000763
431 Ga0500562_001545
432 Ga0500562_002754
433 Ga0500572_000275
434 Ga0500594_0000315
435 Ga0500595_004694
436 Ga0500608_000072
437 Ga0500608_000981
438 Ga0500618_000734
439 Ga0500658_0000758
440 Ga0500559_0000279
441 Ga0500559_0000304
442 Ga0500564_000075
443 Ga0500577_0001493
444 Ga0500590_009733
445 Ga0500622_0000167
446 Ga0500622_0000172
447 Ga0500622_0001556
448 Ga0500645_000909
449 Ga0500645_004104
450 Ga0500609_000224
451 Ga0500609_000454
452 Ga0500596_002679
453 2511125429
454 2524609772
455 2585150345
456 2585151784
457 2585155492
458 2585194731
459 2585199315
460 2587917361
461 2587918295
462 2643748411
463 2643778416
464 2643782391
465 2643924167
466 2643927833
467 2643930797
468 2643998906
469 2644087068
470 2644227118
471 2644227813
472 2644233415
473 2644233926
474 2644342022
475 2644368309
476 2644510084
477 2792459057
478 2792462067
479 2819536297
480 2819540133
481 2819649171
482 2843745972
483 2843746571
484 2849563682
485 2849576010
486 2851153389
487 2857505490
488 2884962246
489 2898331562
490 2928533040

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

24

1025

0.96

PF03176

MMPL

MMPL family

827

1042

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
7rr7-assembly1.cif.gz_C multidrug efflux pump subunit acrb 0.9162 18 1014
4u8y-assembly1.cif.gz_C coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump acrb 0.915 14 1013
6zo5-assembly1.cif.gz_C fusidic acid binding to the tm1/tm2 groove of acrb-g619p_g621p 0.9135 14 1013
2v50-assembly1.cif.gz_C the missing part of the bacterial mexab-oprm system: structural determination of the multidrug exporter mexb 0.9124 14 1012
7rr6-assembly1.cif.gz_C multidrug efflux pump subunit acrb 0.9083 14 1013
ID Description Score Start End Superfamily
af_Q2FVZ5_891_1052_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9791 857 1016 1.20.1640.10
af_Q2FVZ5_39_104_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9747 47 111 3.30.70.1430
af_P38054_46_113_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9666 56 120 3.30.70.1430
af_Q2FVZ5_891_1052_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9614 857 1016 1.20.1640.10
3w9iD05 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9574 863 1013 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A484ZPC0-F1-model_v4 Multidrug transporter MdtC 0.9683 353 501 GO:0005886
GO:0042910
AF-A0A2M7KMU7-F1-model_v4 Efflux RND transporter permease subunit 0.9676 867 1015 GO:0005886
GO:0042910
AF-A0A354YAT9-F1-model_v4 RND transporter 0.9584 11 936 GO:0005886
GO:0042910
AF-A0A354YAT9-F1-model_v4 RND transporter 0.9564 11 936 GO:0005886
GO:0042910
AF-A0A258C0G1-F1-model_v4 ABC transporter permease 0.9553 368 1028 GO:0005886
GO:0042910

Map