F357709
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 245 | 172 | 490 | 304 |
Family's Representative Sequence
| Representative Sequence | 3300049581|Ga0501047_0326611|Ga0501047_0326611_137_1141 |
| Length | 334 |
| Sequence | MTLLLLALPGNERSTDLLEGALAAAPDDGRAARPPAERGAFTLRRFPDGETYVRVETPIRGRDVALVCTLDRPDDKLLPLLFLAATTRDLGAARVGLVAPYLAYMRQDRRFNEGEGVTSAYFAAFLSRSFDWLVTVDPHLHRRGALSEIYSIPTEVVHAAPAVAAWIRTSVRRPLLVGPDSESAQWVAAVAGMAAAPSIVLEKERRGDRDVSVAVPDMERWRDYTPVLVDDIISTARTMIETVRHLRRAGLAAPVCVGVHAVFAAGAYDELRSAGAARVVTCNTIPHLSNDIDLTAHVARAVATRLQRPAPPEGAGRREVPDKGPTLTTRTPRP |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 2 | 3300001915 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 | Metagenome | Rhizosphere |
| 3 | 3300002705 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS | Metagenome | Unclassified |
| 4 | 3300002737 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA | Metagenome | Endosphere |
| 5 | 3300002738 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA | Metagenome | Unclassified |
| 6 | 3300002741 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL | Metagenome | Unclassified |
| 7 | 3300002772 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS | Metagenome | Endosphere |
| 8 | 3300002773 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS | Metagenome | Endosphere |
| 9 | 3300002774 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA | Metagenome | Endosphere |
| 10 | 3300002987 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB | Metagenome | Endosphere |
| 11 | 3300003214 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL | Metagenome | Endosphere |
| 12 | 3300003316 | Sugarcane root Sample L1 | Metagenome | Unclassified |
| 13 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 14 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 15 | 3300003354 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS | Metagenome | Endosphere |
| 16 | 3300003374 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF | Metagenome | Endosphere |
| 17 | 3300003751 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 | Metagenome | Endosphere |
| 18 | 3300003752 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 | Metagenome | Endosphere |
| 19 | 3300003756 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 | Metagenome | Endosphere |
| 20 | 3300003758 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 | Metagenome | Endosphere |
| 21 | 3300003759 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 | Metagenome | Endosphere |
| 22 | 3300003760 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 | Metagenome | Endosphere |
| 23 | 3300003761 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 | Metagenome | Endosphere |
| 24 | 3300003762 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 | Metagenome | Endosphere |
| 25 | 3300003763 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 | Metagenome | Endosphere |
| 26 | 3300003771 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 | Metagenome | Endosphere |
| 27 | 3300003773 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 | Metagenome | Endosphere |
| 28 | 3300003775 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 | Metagenome | Endosphere |
| 29 | 3300003784 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 | Metagenome | Endosphere |
| 30 | 3300003790 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 | Metagenome | Endosphere |
| 31 | 3300003792 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 | Metagenome | Endosphere |
| 32 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 33 | 3300003841 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 34 | 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Metagenome | Rhizosphere |
| 35 | 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Metagenome | Rhizosphere |
| 36 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 37 | 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Metagenome | Rhizosphere |
| 38 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 39 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 40 | 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Metagenome | Rhizosphere |
| 41 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 42 | 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Metagenome | Rhizosphere |
| 43 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 44 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 45 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 46 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 47 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 48 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 49 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 50 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 51 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 52 | 3300006177 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 | Metagenome | Endosphere |
| 53 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 54 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 55 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 57 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 58 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 59 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 60 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 61 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 62 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 63 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 64 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 65 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 66 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 67 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 68 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 69 | 3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Metagenome | Rhizosphere |
| 70 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 71 | 3300015262 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG | Metagenome | Rhizosphere |
| 72 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 73 | 3300025208 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 74 | 3300025224 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 75 | 3300025225 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 76 | 3300025226 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 77 | 3300025228 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 78 | 3300025229 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 79 | 3300025230 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 80 | 3300025231 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 81 | 3300025233 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 82 | 3300025242 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 83 | 3300025245 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) | Metagenome | Endosphere |
| 84 | 3300025246 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) | Metagenome | Unclassified |
| 85 | 3300025250 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) | Metagenome | Unclassified |
| 86 | 3300025253 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 87 | 3300025254 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 88 | 3300025256 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) | Metagenome | Unclassified |
| 89 | 3300025258 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) | Metagenome | Endosphere |
| 90 | 3300025261 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) | Metagenome | Endosphere |
| 91 | 3300025263 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 92 | 3300025272 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 93 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 94 | 3300025284 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 95 | 3300025291 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 96 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 97 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 98 | 3300025299 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 99 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 100 | 3300025303 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 101 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 102 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 103 | 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 104 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 105 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 106 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 107 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 108 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 109 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 110 | 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 111 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 112 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 113 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 114 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 115 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 116 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 117 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 118 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 119 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 120 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 121 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 122 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 123 | 3300031616 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM | Metagenome | Unclassified |
| 124 | 3300031665 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 | Metagenome | Rhizosphere |
| 125 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 126 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 127 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 128 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 129 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 130 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 131 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 132 | 3300033179 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM | Metagenome | Unclassified |
| 133 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 134 | 3300035724 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 | Metagenome | Rhizosphere |
| 135 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 136 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 137 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 138 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 139 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 140 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 141 | 3300041451 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG | Metagenome | Rhizoplane |
| 142 | 3300041459 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG | Metagenome | Rhizoplane |
| 143 | 3300041512 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG | Metagenome | Unclassified |
| 144 | 3300044650 | Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4E | Metagenome | Unclassified |
| 145 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 146 | 3300046462 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere | Metagenome | Rhizosphere |
| 147 | 3300046516 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere | Metagenome | Rhizosphere |
| 148 | 3300046536 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere | Metagenome | Rhizosphere |
| 149 | 3300046543 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere | Metagenome | Rhizosphere |
| 150 | 3300046675 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere | Metagenome | Rhizosphere |
| 151 | 3300046678 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere | Metagenome | Rhizosphere |
| 152 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 153 | 3300047444 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere | Metagenome | Rhizosphere |
| 154 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 155 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 156 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 157 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 158 | 3300050489 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation | Metagenome | Endosphere |
| 159 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 160 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 161 | 3300050515 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation | Metagenome | Rhizosphere |
| 162 | 3300050516 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation | Metagenome | Endosphere |
| 163 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 164 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 165 | 2571042365 | Lysobacter oryzae DSM 21044 | Isolate | Rhizosphere |
| 166 | 2596583598 | Ralstonia sp. UNCCL144 | Isolate | Unclassified |
| 167 | 2599185178 | Ralstonia sp. NFACC01 | Isolate | Rhizoplane |
| 168 | 2885266251 | Ralstonia sp. SET104 | Isolate | Nodule |
| 169 | 2895395659 | Rhodanobacter sp. T12-5 | Isolate | Unclassified |
| 170 | 2900577576 | Ralstonia sp. TCR112 | Isolate | Rhizosphere |
| 171 | 2904449895 | Variovorax sp. 1763 | Isolate | Rhizosphere |
| 172 | 2928058823 | Ralstonia sp. 1138 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 96.73 |
| Metatranscriptomes | 0 |
| Isolates | 3.27 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 39.59 |
| Nodule | 0.41 |
| Rhizoplane | 1.22 |
| Rhizosphere | 45.71 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 4.49 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0501047_0326611 | 3300049581 | Unclassified | 1373 |
| 2 | JGI24741J21665_1000197 | 3300001915 | Bacteria | 17760 |
| 3 | JGI25156J39149_1004317 | 3300002705 | Bacteria | 4365 |
| 4 | JGI25156J39149_1008925 | 3300002705 | Bacteria | 2481 |
| 5 | JGI25156J39149_1021515 | 3300002705 | Bacteria | 1114 |
| 6 | JGI25162J39368_1000064 | 3300002737 | Bacteria | 133482 |
| 7 | JGI25162J39368_1002074 | 3300002737 | Bacteria | 8609 |
| 8 | JGI25154J39366_1006769 | 3300002738 | Bacteria | 1639 |
| 9 | JGI25157J39369_1000411 | 3300002741 | Bacteria | 28952 |
| 10 | JGI25157J39369_1000508 | 3300002741 | Bacteria | 23994 |
| 11 | JGI25157J39369_1002563 | 3300002741 | Bacteria | 4364 |
| 12 | JGI25164J39214_1000155 | 3300002772 | Bacteria | 64758 |
| 13 | JGI25164J39214_1000161 | 3300002772 | Bacteria | 63192 |
| 14 | JGI25152J39213_1009720 | 3300002773 | Unclassified | 2260 |
| 15 | JGI25150J39212_1004067 | 3300002774 | Unclassified | 3309 |
| 16 | JGI25159J45721_1003672 | 3300002987 | Bacteria | 5331 |
| 17 | JGI25165J46597_1000059 | 3300003214 | Bacteria | 211634 |
| 18 | JGI25165J46597_1000321 | 3300003214 | Bacteria | 57780 |
| 19 | rootH1_10083378 | 3300003316 | Bacteria | 3956 |
| 20 | rootL2_10171943 | 3300003322 | Bacteria | 2951 |
| 21 | rootL2_10197484 | 3300003322 | Bacteria | 4049 |
| 22 | rootH1_10126054 | 3300003323 | Bacteria | 3370 |
| 23 | JGI25160J50197_1004082 | 3300003354 | Bacteria | 6357 |
| 24 | JGI25161J50226_1002127 | 3300003374 | Bacteria | 5323 |
| 25 | Ga0055538_1000298 | 3300003751 | Bacteria | 24894 |
| 26 | Ga0055539_1000300 | 3300003752 | Bacteria | 26848 |
| 27 | Ga0055533_1000167 | 3300003756 | Bacteria | 60266 |
| 28 | Ga0055533_1000308 | 3300003756 | Bacteria | 23910 |
| 29 | Ga0055532_1000037 | 3300003758 | Bacteria | 205054 |
| 30 | Ga0055525_1000294 | 3300003759 | Bacteria | 44173 |
| 31 | Ga0055527_1000044 | 3300003760 | Bacteria | 111829 |
| 32 | Ga0055527_1000047 | 3300003760 | Bacteria | 109679 |
| 33 | Ga0055527_1000615 | 3300003760 | Bacteria | 11313 |
| 34 | Ga0055527_1003388 | 3300003760 | Bacteria | 2384 |
| 35 | Ga0055535_1000018 | 3300003761 | Bacteria | 243804 |
| 36 | Ga0055535_1000040 | 3300003761 | Bacteria | 157988 |
| 37 | Ga0055535_1000109 | 3300003761 | Bacteria | 89299 |
| 38 | Ga0055535_1000991 | 3300003761 | Bacteria | 18354 |
| 39 | Ga0055535_1001612 | 3300003761 | Bacteria | 10579 |
| 40 | Ga0055542_1000065 | 3300003762 | Bacteria | 157988 |
| 41 | Ga0055542_1000108 | 3300003762 | Bacteria | 111829 |
| 42 | Ga0055542_1000341 | 3300003762 | Bacteria | 49456 |
| 43 | Ga0055542_1000524 | 3300003762 | Bacteria | 34530 |
| 44 | Ga0055529_1000041 | 3300003763 | Bacteria | 226495 |
| 45 | Ga0055529_1000094 | 3300003763 | Bacteria | 134217 |
| 46 | Ga0055529_1000361 | 3300003763 | Bacteria | 49632 |
| 47 | Ga0055529_1000646 | 3300003763 | Bacteria | 25329 |
| 48 | Ga0055526_1000050 | 3300003771 | Bacteria | 117283 |
| 49 | Ga0055526_1003900 | 3300003771 | Bacteria | 9233 |
| 50 | Ga0055537_1003137 | 3300003773 | Bacteria | 5184 |
| 51 | Ga0055524_1005887 | 3300003775 | Bacteria | 5407 |
| 52 | Ga0055534_1002557 | 3300003784 | Bacteria | 6236 |
| 53 | Ga0055528_1007015 | 3300003790 | Bacteria | 5037 |
| 54 | Ga0055540_1000582 | 3300003792 | Bacteria | 26747 |
| 55 | Ga0055531_10003133 | 3300003794 | Bacteria | 10659 |
| 56 | Ga0055541_1000455 | 3300003841 | Bacteria | 11790 |
| 57 | Ga0070690_100055034 | 3300005330 | Bacteria | 2548 |
| 58 | Ga0070689_100096089 | 3300005340 | Bacteria | 2341 |
| 59 | Ga0070661_100000104 | 3300005344 | Bacteria | 69475 |
| 60 | Ga0070669_100194363 | 3300005353 | Bacteria | 1593 |
| 61 | Ga0070714_100088625 | 3300005435 | Bacteria | 2708 |
| 62 | Ga0070713_100003316 | 3300005436 | Bacteria | 10617 |
| 63 | Ga0070694_100032809 | 3300005444 | Bacteria | 3412 |
| 64 | Ga0070663_100000030 | 3300005455 | Bacteria | 76733 |
| 65 | Ga0070678_100416115 | 3300005456 | Bacteria | 1171 |
| 66 | Ga0070698_100083515 | 3300005471 | Bacteria | 3183 |
| 67 | Ga0070698_100119340 | 3300005471 | Bacteria | 2598 |
| 68 | Ga0068853_100084173 | 3300005539 | Bacteria | 2787 |
| 69 | Ga0070672_100348703 | 3300005543 | Unclassified | 1262 |
| 70 | Ga0070665_100037171 | 3300005548 | Bacteria | 4898 |
| 71 | Ga0070664_100000037 | 3300005564 | Bacteria | 81234 |
| 72 | Ga0068857_100004542 | 3300005577 | Bacteria | 11739 |
| 73 | Ga0068856_100052185 | 3300005614 | Bacteria | 4032 |
| 74 | Ga0068856_100235603 | 3300005614 | Bacteria | 1846 |
| 75 | Ga0068852_100149550 | 3300005616 | Bacteria | 2170 |
| 76 | Ga0075365_10044984 | 3300006038 | Bacteria | 2895 |
| 77 | Ga0075362_10000902 | 3300006177 | Bacteria | 9006 |
| 78 | Ga0075431_100050609 | 3300006847 | Bacteria | 4283 |
| 79 | Ga0105240_10002357 | 3300009093 | Bacteria | 30451 |
| 80 | Ga0105240_10069459 | 3300009093 | Bacteria | 4360 |
| 81 | Ga0105240_10118662 | 3300009093 | Bacteria | 3188 |
| 82 | Ga0111539_10003498 | 3300009094 | Bacteria | 20714 |
| 83 | Ga0111539_10128834 | 3300009094 | Bacteria | 2964 |
| 84 | Ga0105245_10236004 | 3300009098 | Bacteria | 1771 |
| 85 | Ga0105242_10099625 | 3300009176 | Unclassified | 2460 |
| 86 | Ga0105248_10130975 | 3300009177 | Bacteria | 2830 |
| 87 | Ga0105248_10458388 | 3300009177 | Bacteria | 1437 |
| 88 | Ga0105237_10003967 | 3300009545 | Bacteria | 17311 |
| 89 | Ga0105238_10020814 | 3300009551 | Bacteria | 6681 |
| 90 | Ga0105239_10001665 | 3300010375 | Bacteria | 29281 |
| 91 | Ga0157373_10015908 | 3300013100 | Bacteria | 5491 |
| 92 | Ga0157371_10000213 | 3300013102 | Bacteria | 84696 |
| 93 | Ga0157371_10039068 | 3300013102 | Bacteria | 3395 |
| 94 | Ga0157370_10000239 | 3300013104 | Bacteria | 69976 |
| 95 | Ga0157369_10352744 | 3300013105 | Bacteria | 1528 |
| 96 | Ga0157378_10602719 | 3300013297 | Bacteria | 1110 |
| 97 | Ga0163162_10349978 | 3300013306 | Unclassified | 1610 |
| 98 | Ga0157372_10000116 | 3300013307 | Bacteria | 84694 |
| 99 | Ga0182008_10027784 | 3300014497 | Plasmid | 2863 |
| 100 | Ga0182006_1000935 | 3300015261 | Bacteria | 19472 |
| 101 | Ga0182007_10027978 | 3300015262 | Bacteria | 1940 |
| 102 | Ga0182007_10037211 | 3300015262 | Bacteria | 1635 |
| 103 | Ga0213876_10011117 | 3300021384 | Bacteria | 4814 |
| 104 | Ga0209436_100825 | 3300025208 | Bacteria | 12584 |
| 105 | Ga0209784_100066 | 3300025224 | Bacteria | 154427 |
| 106 | Ga0209566_100661 | 3300025225 | Bacteria | 20648 |
| 107 | Ga0209674_100026 | 3300025226 | Bacteria | 490631 |
| 108 | Ga0209674_101540 | 3300025226 | Bacteria | 5911 |
| 109 | Ga0209674_101784 | 3300025226 | Bacteria | 5221 |
| 110 | Ga0209672_100017 | 3300025228 | Bacteria | 514236 |
| 111 | Ga0209672_100024 | 3300025228 | Bacteria | 367869 |
| 112 | Ga0209672_100259 | 3300025228 | Bacteria | 39126 |
| 113 | Ga0209672_100296 | 3300025228 | Bacteria | 34508 |
| 114 | Ga0209672_101190 | 3300025228 | Bacteria | 10577 |
| 115 | Ga0209147_100005 | 3300025229 | Bacteria | 1036530 |
| 116 | Ga0209563_100067 | 3300025230 | Bacteria | 256096 |
| 117 | Ga0207427_100021 | 3300025231 | Bacteria | 494115 |
| 118 | Ga0207427_100046 | 3300025231 | Bacteria | 240976 |
| 119 | Ga0209437_100039 | 3300025233 | Bacteria | 448321 |
| 120 | Ga0209437_100150 | 3300025233 | Bacteria | 157430 |
| 121 | Ga0209258_100007 | 3300025242 | Bacteria | 1036530 |
| 122 | Ga0209258_100038 | 3300025242 | Bacteria | 398959 |
| 123 | Ga0209258_100047 | 3300025242 | Bacteria | 367869 |
| 124 | Ga0209258_100425 | 3300025242 | Bacteria | 49610 |
| 125 | Ga0209258_100529 | 3300025242 | Bacteria | 36394 |
| 126 | Ga0207425_1000082 | 3300025245 | Bacteria | 97145 |
| 127 | Ga0209646_1000668 | 3300025246 | Bacteria | 12657 |
| 128 | Ga0209026_1000069 | 3300025250 | Bacteria | 207574 |
| 129 | Ga0209026_1000261 | 3300025250 | Bacteria | 65449 |
| 130 | Ga0209026_1002609 | 3300025250 | Bacteria | 6604 |
| 131 | Ga0209026_1002610 | 3300025250 | Bacteria | 6604 |
| 132 | Ga0209677_100109 | 3300025253 | Bacteria | 88712 |
| 133 | Ga0209148_1000009 | 3300025254 | Bacteria | 1395625 |
| 134 | Ga0209148_1000054 | 3300025254 | Bacteria | 367869 |
| 135 | Ga0209148_1000214 | 3300025254 | Bacteria | 99629 |
| 136 | Ga0209148_1000541 | 3300025254 | Bacteria | 36394 |
| 137 | Ga0209148_1002439 | 3300025254 | Bacteria | 6404 |
| 138 | Ga0209759_1000301 | 3300025256 | Bacteria | 67978 |
| 139 | Ga0209759_1001462 | 3300025256 | Bacteria | 13234 |
| 140 | Ga0209759_1005008 | 3300025256 | Bacteria | 4765 |
| 141 | Ga0209759_1007524 | 3300025256 | Bacteria | 3493 |
| 142 | Ga0209129_1001698 | 3300025258 | Bacteria | 11889 |
| 143 | Ga0209233_1000023 | 3300025261 | Bacteria | 738870 |
| 144 | Ga0209233_1000090 | 3300025261 | Bacteria | 315680 |
| 145 | Ga0209565_1002909 | 3300025263 | Bacteria | 5852 |
| 146 | Ga0209455_1000011 | 3300025272 | Bacteria | 947242 |
| 147 | Ga0209455_1000032 | 3300025272 | Bacteria | 514243 |
| 148 | Ga0209455_1000052 | 3300025272 | Bacteria | 367804 |
| 149 | Ga0209455_1000184 | 3300025272 | Bacteria | 99629 |
| 150 | Ga0209455_1002222 | 3300025272 | Bacteria | 7649 |
| 151 | Ga0209673_1006477 | 3300025273 | Bacteria | 5647 |
| 152 | Ga0209130_1001996 | 3300025284 | Bacteria | 11153 |
| 153 | Ga0209675_1004208 | 3300025291 | Bacteria | 6499 |
| 154 | Ga0209564_1000007 | 3300025295 | Bacteria | 1028582 |
| 155 | Ga0209564_1003239 | 3300025295 | Bacteria | 11384 |
| 156 | Ga0209050_1000011 | 3300025298 | Bacteria | 914037 |
| 157 | Ga0209256_1002909 | 3300025299 | Bacteria | 12915 |
| 158 | Ga0207426_1002526 | 3300025302 | Bacteria | 11481 |
| 159 | Ga0209051_1000144 | 3300025303 | Bacteria | 134811 |
| 160 | Ga0209051_1029593 | 3300025303 | Bacteria | 2140 |
| 161 | Ga0209257_1000518 | 3300025304 | Bacteria | 66924 |
| 162 | Ga0207645_10052363 | 3300025907 | Bacteria | 2608 |
| 163 | Ga0207643_10169662 | 3300025908 | Bacteria | 1316 |
| 164 | Ga0207707_10214032 | 3300025912 | Bacteria | 1678 |
| 165 | Ga0207695_10000287 | 3300025913 | Bacteria | 125161 |
| 166 | Ga0207695_10004148 | 3300025913 | Bacteria | 19891 |
| 167 | Ga0207695_10050932 | 3300025913 | Bacteria | 4352 |
| 168 | Ga0207671_10003147 | 3300025914 | Bacteria | 16737 |
| 169 | Ga0207649_10000105 | 3300025920 | Bacteria | 69483 |
| 170 | Ga0207664_10059132 | 3300025929 | Bacteria | 3051 |
| 171 | Ga0207664_10280324 | 3300025929 | Bacteria | 1462 |
| 172 | Ga0207709_10311907 | 3300025935 | Bacteria | 1174 |
| 173 | Ga0207704_10086045 | 3300025938 | Bacteria | 2049 |
| 174 | Ga0207711_10095481 | 3300025941 | Unclassified | 2622 |
| 175 | Ga0207679_10000067 | 3300025945 | Bacteria | 96016 |
| 176 | Ga0207678_10000041 | 3300026067 | Bacteria | 96726 |
| 177 | Ga0207702_10000605 | 3300026078 | Bacteria | 39648 |
| 178 | Ga0207702_10019772 | 3300026078 | Bacteria | 5575 |
| 179 | Ga0207674_10001002 | 3300026116 | Bacteria | 36849 |
| 180 | Ga0207698_10125095 | 3300026142 | Bacteria | 2185 |
| 181 | Ga0268266_10051841 | 3300028379 | Bacteria | 3523 |
| 182 | Ga0265325_10005390 | 3300031241 | Bacteria | 7903 |
| 183 | Ga0265339_10001204 | 3300031249 | Bacteria | 19501 |
| 184 | Ga0265331_10000080 | 3300031250 | Bacteria | 137743 |
| 185 | Ga0265316_10038601 | 3300031344 | Bacteria | 3845 |
| 186 | Ga0265313_10002165 | 3300031595 | Bacteria | 17438 |
| 187 | Ga0307508_10016992 | 3300031616 | Bacteria | 6618 |
| 188 | Ga0316575_10046587 | 3300031665 | Unclassified | 1722 |
| 189 | Ga0265314_10027721 | 3300031711 | Bacteria | 4238 |
| 190 | Ga0316576_10148904 | 3300031727 | Bacteria | 1764 |
| 191 | Ga0307516_10136272 | 3300031730 | Bacteria | 2229 |
| 192 | Ga0307405_10045674 | 3300031731 | Bacteria | 2686 |
| 193 | Ga0307406_10141803 | 3300031901 | Bacteria | 1702 |
| 194 | Ga0307416_100053743 | 3300032002 | Bacteria | 3233 |
| 195 | Ga0307415_100266511 | 3300032126 | Bacteria | 1401 |
| 196 | Ga0307507_10022173 | 3300033179 | Bacteria | 7033 |
| 197 | Ga0316574_0004290 | 3300035398 | Bacteria | 7447 |
| 198 | Ga0373933_0009227 | 3300035724 | Bacteria | 5387 |
| 199 | Ga0373937_0004575 | 3300036401 | Bacteria | 11733 |
| 200 | Ga0395899_0000552 | 3300037312 | Bacteria | 40348 |
| 201 | Ga0395899_0103348 | 3300037312 | Bacteria | 2055 |
| 202 | Ga0395900_0000256 | 3300037418 | Bacteria | 82977 |
| 203 | Ga0395900_0001769 | 3300037418 | Bacteria | 24813 |
| 204 | Ga0395898_0000249 | 3300037466 | Bacteria | 134019 |
| 205 | Ga0395898_0002196 | 3300037466 | Bacteria | 23815 |
| 206 | Ga0395898_0002530 | 3300037466 | Bacteria | 21459 |
| 207 | Ga0395901_0000267 | 3300038443 | Bacteria | 64966 |
| 208 | Ga0395901_0000646 | 3300038443 | Bacteria | 40293 |
| 209 | Ga0436365_0269741 | 3300039437 | Bacteria | 31894 |
| 210 | Ga0451791_1627911 | 3300041451 | Bacteria | 1407 |
| 211 | Ga0451800_0445718 | 3300041459 | Bacteria | 1199 |
| 212 | Ga0451853_2049667 | 3300041512 | Unclassified | 1566 |
| 213 | Ga0451853_2058081 | 3300041512 | Bacteria | 2818 |
| 214 | Ga0466986_0002906 | 3300044650 | Bacteria | 8601 |
| 215 | Ga0466969_0000590 | 3300044656 | Bacteria | 19717 |
| 216 | Ga0495651_0057167 | 3300046462 | Bacteria | 2995 |
| 217 | Ga0495628_0053607 | 3300046516 | Bacteria | 3182 |
| 218 | Ga0495587_0002287 | 3300046536 | Bacteria | 12841 |
| 219 | Ga0495645_0000214 | 3300046543 | Bacteria | 41700 |
| 220 | Ga0495657_0097000 | 3300046675 | Bacteria | 1883 |
| 221 | Ga0495599_0107489 | 3300046678 | Bacteria | 1738 |
| 222 | Ga0495658_0031429 | 3300046683 | Bacteria | 2892 |
| 223 | Ga0495675_0122871 | 3300047444 | Bacteria | 1616 |
| 224 | Ga0496125_0006016 | 3300048928 | Bacteria | 13272 |
| 225 | Ga0501032_0065440 | 3300049569 | Bacteria | 2431 |
| 226 | Ga0501034_0000215 | 3300049571 | Bacteria | 110067 |
| 227 | Ga0501034_0000536 | 3300049571 | Bacteria | 60287 |
| 228 | Ga0501047_0117247 | 3300049581 | Bacteria | 2544 |
| 229 | Ga0501080_0506680 | 3300049742 | Bacteria | 1078 |
| 230 | nmdc:mga03683_60245_c1 | 3300050489 | Bacteria | 1603 |
| 231 | nmdc:mga0yw44_14877_c1 | 3300050492 | Bacteria | 4148 |
| 232 | nmdc:mga08y16_2110_c1 | 3300050511 | Bacteria | 20383 |
| 233 | nmdc:mga08y16_424282_c1 | 3300050511 | Unclassified | 1359 |
| 234 | nmdc:mga0a205_167432_c1 | 3300050515 | Bacteria | 2093 |
| 235 | nmdc:mga0sz30_33340_c1 | 3300050516 | Bacteria | 2140 |
| 236 | Ga0501084_0266245 | 3300054114 | Unclassified | 1447 |
| 237 | Ga0501082_0021887 | 3300060353 | Bacteria | 5511 |
| 238 | 2572253964 | 2571042365 | Bacteria | 3289345 |
| 239 | 2597030680 | 2596583598 | Bacteria | 5251611 |
| 240 | 2599447824 | 2599185178 | Bacteria | 5365746 |
| 241 | 2885269158 | 2885266251 | Bacteria | 4796748 |
| 242 | 2895395783 | 2895395659 | Bacteria | 3983269 |
| 243 | 2900582096 | 2900577576 | Bacteria | 5438534 |
| 244 | 2904453600 | 2904449895 | Bacteria | 6927402 |
| 245 | 2928058989 | 2928058823 | Bacteria | 5520022 |
| 246 | Ga0501047_0326611 | |||
| 247 | JGI24741J21665_1000197 | |||
| 248 | JGI25156J39149_1004317 | |||
| 249 | JGI25156J39149_1008925 | |||
| 250 | JGI25156J39149_1021515 | |||
| 251 | JGI25162J39368_1000064 | |||
| 252 | JGI25162J39368_1002074 | |||
| 253 | JGI25154J39366_1006769 | |||
| 254 | JGI25157J39369_1000411 | |||
| 255 | JGI25157J39369_1000508 | |||
| 256 | JGI25157J39369_1002563 | |||
| 257 | JGI25164J39214_1000155 | |||
| 258 | JGI25164J39214_1000161 | |||
| 259 | JGI25152J39213_1009720 | |||
| 260 | JGI25150J39212_1004067 | |||
| 261 | JGI25159J45721_1003672 | |||
| 262 | JGI25165J46597_1000059 | |||
| 263 | JGI25165J46597_1000321 | |||
| 264 | rootH1_10083378 | |||
| 265 | rootL2_10171943 | |||
| 266 | rootL2_10197484 | |||
| 267 | rootH1_10126054 | |||
| 268 | JGI25160J50197_1004082 | |||
| 269 | JGI25161J50226_1002127 | |||
| 270 | Ga0055538_1000298 | |||
| 271 | Ga0055539_1000300 | |||
| 272 | Ga0055533_1000167 | |||
| 273 | Ga0055533_1000308 | |||
| 274 | Ga0055532_1000037 | |||
| 275 | Ga0055525_1000294 | |||
| 276 | Ga0055527_1000044 | |||
| 277 | Ga0055527_1000047 | |||
| 278 | Ga0055527_1000615 | |||
| 279 | Ga0055527_1003388 | |||
| 280 | Ga0055535_1000018 | |||
| 281 | Ga0055535_1000040 | |||
| 282 | Ga0055535_1000109 | |||
| 283 | Ga0055535_1000991 | |||
| 284 | Ga0055535_1001612 | |||
| 285 | Ga0055542_1000065 | |||
| 286 | Ga0055542_1000108 | |||
| 287 | Ga0055542_1000341 | |||
| 288 | Ga0055542_1000524 | |||
| 289 | Ga0055529_1000041 | |||
| 290 | Ga0055529_1000094 | |||
| 291 | Ga0055529_1000361 | |||
| 292 | Ga0055529_1000646 | |||
| 293 | Ga0055526_1000050 | |||
| 294 | Ga0055526_1003900 | |||
| 295 | Ga0055537_1003137 | |||
| 296 | Ga0055524_1005887 | |||
| 297 | Ga0055534_1002557 | |||
| 298 | Ga0055528_1007015 | |||
| 299 | Ga0055540_1000582 | |||
| 300 | Ga0055531_10003133 | |||
| 301 | Ga0055541_1000455 | |||
| 302 | Ga0070690_100055034 | |||
| 303 | Ga0070689_100096089 | |||
| 304 | Ga0070661_100000104 | |||
| 305 | Ga0070669_100194363 | |||
| 306 | Ga0070714_100088625 | |||
| 307 | Ga0070713_100003316 | |||
| 308 | Ga0070694_100032809 | |||
| 309 | Ga0070663_100000030 | |||
| 310 | Ga0070678_100416115 | |||
| 311 | Ga0070698_100083515 | |||
| 312 | Ga0070698_100119340 | |||
| 313 | Ga0068853_100084173 | |||
| 314 | Ga0070672_100348703 | |||
| 315 | Ga0070665_100037171 | |||
| 316 | Ga0070664_100000037 | |||
| 317 | Ga0068857_100004542 | |||
| 318 | Ga0068856_100052185 | |||
| 319 | Ga0068856_100235603 | |||
| 320 | Ga0068852_100149550 | |||
| 321 | Ga0075365_10044984 | |||
| 322 | Ga0075362_10000902 | |||
| 323 | Ga0075431_100050609 | |||
| 324 | Ga0105240_10002357 | |||
| 325 | Ga0105240_10069459 | |||
| 326 | Ga0105240_10118662 | |||
| 327 | Ga0111539_10003498 | |||
| 328 | Ga0111539_10128834 | |||
| 329 | Ga0105245_10236004 | |||
| 330 | Ga0105242_10099625 | |||
| 331 | Ga0105248_10130975 | |||
| 332 | Ga0105248_10458388 | |||
| 333 | Ga0105237_10003967 | |||
| 334 | Ga0105238_10020814 | |||
| 335 | Ga0105239_10001665 | |||
| 336 | Ga0157373_10015908 | |||
| 337 | Ga0157371_10000213 | |||
| 338 | Ga0157371_10039068 | |||
| 339 | Ga0157370_10000239 | |||
| 340 | Ga0157369_10352744 | |||
| 341 | Ga0157378_10602719 | |||
| 342 | Ga0163162_10349978 | |||
| 343 | Ga0157372_10000116 | |||
| 344 | Ga0182008_10027784 | |||
| 345 | Ga0182006_1000935 | |||
| 346 | Ga0182007_10027978 | |||
| 347 | Ga0182007_10037211 | |||
| 348 | Ga0213876_10011117 | |||
| 349 | Ga0209436_100825 | |||
| 350 | Ga0209784_100066 | |||
| 351 | Ga0209566_100661 | |||
| 352 | Ga0209674_100026 | |||
| 353 | Ga0209674_101540 | |||
| 354 | Ga0209674_101784 | |||
| 355 | Ga0209672_100017 | |||
| 356 | Ga0209672_100024 | |||
| 357 | Ga0209672_100259 | |||
| 358 | Ga0209672_100296 | |||
| 359 | Ga0209672_101190 | |||
| 360 | Ga0209147_100005 | |||
| 361 | Ga0209563_100067 | |||
| 362 | Ga0207427_100021 | |||
| 363 | Ga0207427_100046 | |||
| 364 | Ga0209437_100039 | |||
| 365 | Ga0209437_100150 | |||
| 366 | Ga0209258_100007 | |||
| 367 | Ga0209258_100038 | |||
| 368 | Ga0209258_100047 | |||
| 369 | Ga0209258_100425 | |||
| 370 | Ga0209258_100529 | |||
| 371 | Ga0207425_1000082 | |||
| 372 | Ga0209646_1000668 | |||
| 373 | Ga0209026_1000069 | |||
| 374 | Ga0209026_1000261 | |||
| 375 | Ga0209026_1002609 | |||
| 376 | Ga0209026_1002610 | |||
| 377 | Ga0209677_100109 | |||
| 378 | Ga0209148_1000009 | |||
| 379 | Ga0209148_1000054 | |||
| 380 | Ga0209148_1000214 | |||
| 381 | Ga0209148_1000541 | |||
| 382 | Ga0209148_1002439 | |||
| 383 | Ga0209759_1000301 | |||
| 384 | Ga0209759_1001462 | |||
| 385 | Ga0209759_1005008 | |||
| 386 | Ga0209759_1007524 | |||
| 387 | Ga0209129_1001698 | |||
| 388 | Ga0209233_1000023 | |||
| 389 | Ga0209233_1000090 | |||
| 390 | Ga0209565_1002909 | |||
| 391 | Ga0209455_1000011 | |||
| 392 | Ga0209455_1000032 | |||
| 393 | Ga0209455_1000052 | |||
| 394 | Ga0209455_1000184 | |||
| 395 | Ga0209455_1002222 | |||
| 396 | Ga0209673_1006477 | |||
| 397 | Ga0209130_1001996 | |||
| 398 | Ga0209675_1004208 | |||
| 399 | Ga0209564_1000007 | |||
| 400 | Ga0209564_1003239 | |||
| 401 | Ga0209050_1000011 | |||
| 402 | Ga0209256_1002909 | |||
| 403 | Ga0207426_1002526 | |||
| 404 | Ga0209051_1000144 | |||
| 405 | Ga0209051_1029593 | |||
| 406 | Ga0209257_1000518 | |||
| 407 | Ga0207645_10052363 | |||
| 408 | Ga0207643_10169662 | |||
| 409 | Ga0207707_10214032 | |||
| 410 | Ga0207695_10000287 | |||
| 411 | Ga0207695_10004148 | |||
| 412 | Ga0207695_10050932 | |||
| 413 | Ga0207671_10003147 | |||
| 414 | Ga0207649_10000105 | |||
| 415 | Ga0207664_10059132 | |||
| 416 | Ga0207664_10280324 | |||
| 417 | Ga0207709_10311907 | |||
| 418 | Ga0207704_10086045 | |||
| 419 | Ga0207711_10095481 | |||
| 420 | Ga0207679_10000067 | |||
| 421 | Ga0207678_10000041 | |||
| 422 | Ga0207702_10000605 | |||
| 423 | Ga0207702_10019772 | |||
| 424 | Ga0207674_10001002 | |||
| 425 | Ga0207698_10125095 | |||
| 426 | Ga0268266_10051841 | |||
| 427 | Ga0265325_10005390 | |||
| 428 | Ga0265339_10001204 | |||
| 429 | Ga0265331_10000080 | |||
| 430 | Ga0265316_10038601 | |||
| 431 | Ga0265313_10002165 | |||
| 432 | Ga0307508_10016992 | |||
| 433 | Ga0316575_10046587 | |||
| 434 | Ga0265314_10027721 | |||
| 435 | Ga0316576_10148904 | |||
| 436 | Ga0307516_10136272 | |||
| 437 | Ga0307405_10045674 | |||
| 438 | Ga0307406_10141803 | |||
| 439 | Ga0307416_100053743 | |||
| 440 | Ga0307415_100266511 | |||
| 441 | Ga0307507_10022173 | |||
| 442 | Ga0316574_0004290 | |||
| 443 | Ga0373933_0009227 | |||
| 444 | Ga0373937_0004575 | |||
| 445 | Ga0395899_0000552 | |||
| 446 | Ga0395899_0103348 | |||
| 447 | Ga0395900_0000256 | |||
| 448 | Ga0395900_0001769 | |||
| 449 | Ga0395898_0000249 | |||
| 450 | Ga0395898_0002196 | |||
| 451 | Ga0395898_0002530 | |||
| 452 | Ga0395901_0000267 | |||
| 453 | Ga0395901_0000646 | |||
| 454 | Ga0436365_0269741 | |||
| 455 | Ga0451791_1627911 | |||
| 456 | Ga0451800_0445718 | |||
| 457 | Ga0451853_2049667 | |||
| 458 | Ga0451853_2058081 | |||
| 459 | Ga0466986_0002906 | |||
| 460 | Ga0466969_0000590 | |||
| 461 | Ga0495651_0057167 | |||
| 462 | Ga0495628_0053607 | |||
| 463 | Ga0495587_0002287 | |||
| 464 | Ga0495645_0000214 | |||
| 465 | Ga0495657_0097000 | |||
| 466 | Ga0495599_0107489 | |||
| 467 | Ga0495658_0031429 | |||
| 468 | Ga0495675_0122871 | |||
| 469 | Ga0496125_0006016 | |||
| 470 | Ga0501032_0065440 | |||
| 471 | Ga0501034_0000215 | |||
| 472 | Ga0501034_0000536 | |||
| 473 | Ga0501047_0117247 | |||
| 474 | Ga0501080_0506680 | |||
| 475 | nmdc:mga03683_60245_c1 | |||
| 476 | nmdc:mga0yw44_14877_c1 | |||
| 477 | nmdc:mga08y16_2110_c1 | |||
| 478 | nmdc:mga08y16_424282_c1 | |||
| 479 | nmdc:mga0a205_167432_c1 | |||
| 480 | nmdc:mga0sz30_33340_c1 | |||
| 481 | Ga0501084_0266245 | |||
| 482 | Ga0501082_0021887 | |||
| 483 | 2572253964 | |||
| 484 | 2597030680 | |||
| 485 | 2599447824 | |||
| 486 | 2885269158 | |||
| 487 | 2895395783 | |||
| 488 | 2900582096 | |||
| 489 | 2904453600 | |||
| 490 | 2928058989 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1dku-assembly1.cif.gz_A | crystal structures of bacillus subtilis phosphoribosylpyrophosphate synthetase: molecular basis of allosteric inhibition and activation. | 0.8994 | 11 | 300 |
| 7pn0-assembly1.cif.gz_A | crystal structure of the phosphorybosylpyrophosphate synthetase ii from thermus thermophilus at r32 space group | 0.8975 | 11 | 300 |
| 1u9y-assembly1.cif.gz_A | crystal structure of phosphoribosyl diphosphate synthase from methanocaldococcus jannaschii | 0.8961 | 13 | 295 |
| 3efh-assembly1.cif.gz_A | crystal structure of human phosphoribosyl pyrophosphate synthetase 1 | 0.8931 | 11 | 300 |
| 8dbo-assembly1.cif.gz_A | human prps1-e307a engineered mutation with adp; hexamer | 0.8925 | 10 | 306 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 1u9yA01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; | 0.9274 | 13 | 154 | 3.40.50.2020 |
| 4twbA01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; | 0.915 | 13 | 154 | 3.40.50.2020 |
| af_Q4CLG0_51_161_3.40.50.2020 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; | 0.9136 | 10 | 109 | 3.40.50.2020 |
| af_Q4KME9_7_191_3.40.50.2020 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; | 0.9096 | 16 | 194 | 3.40.50.2020 |
| af_Q2G0S2_14_197_3.40.50.2020 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; | 0.909 | 16 | 194 | 3.40.50.2020 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A3D2L8D8-F1-model_v4 | ribose-phosphate diphosphokinase (EC 2.7.6.1) | 0.9889 | 11 | 177 |
GO:0000287
GO:0002189 GO:0004749 GO:0005737 GO:0006015 GO:0006164 GO:0016301 |
| AF-A0A3D2L7H8-F1-model_v4 | Phosphoribosylpyrophosphate synthetase (EC 2.7.6.1) | 0.9845 | 221 | 290 |
GO:0004749
|
| AF-X1CG91-F1-model_v4 | ribose-phosphate diphosphokinase (EC 2.7.6.1) | 0.9824 | 11 | 161 |
GO:0000287
GO:0002189 GO:0004749 GO:0005737 GO:0006015 GO:0006164 GO:0016301 |
| AF-A0A357NQ22-F1-model_v4 | deleted | 0.9791 | 11 | 140 |
|
| AF-A0A3D2L8D8-F1-model_v4 | ribose-phosphate diphosphokinase (EC 2.7.6.1) | 0.9773 | 11 | 177 |
GO:0000287
GO:0002189 GO:0004749 GO:0005737 GO:0006015 GO:0006164 GO:0016301 |