F358595

General Info

Members Datasets Scaffolds Average Seq Length
246 190 492 827

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2597490356|2599106190
Length 950
Sequence NVVIVESPAKAKTINKYLGSDYTVVASFGHVRDLPARDGSVRPDEDFAMDWELGDRSKRHIDEIAKAVKGAERVYLATDPDREGEAIAWHLSELLREKRLIDDSKVQRITFNEITKSAVQAALEAPRDVSRELVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERESEIEVFKPQEYWTIEVGFATPGGASFTAQLTQLDGKRLDKFALPAREAAEAAVARISPQAFSVATVERKQSRRNPSPPFTTSTLQQEASRKLGFGATRTMRTAQRLYEGVDIGGETVGLITYMRTDGVSLSQEAIESARNLIGSHWGERYVPAQPRVYKTAAKNAQEAHEAIRPTDLFRRPEEVSTYLEGDELRLYELIWKRTLASQMESAVLDQVAVDIASPSKDVVLRATGSVVVFDGFLKVYQEDRDDGAADDDQERRLPAMDQGDALARGDISPEQHFTQPPPRYTEASLVKKLEELGIGRPSTYASILQVLQDRNYVRLDKRRFIPEDRGRLVTAFLKNFFNRYVEYNFTADLENKLDEISDGRIDWKTVLRDFWRAFHVAVDGTKDLTITQVLTTLDEELGPHFFPTNGNSDTPGHDPRVCPVCSQGRLGLKLGKMGAFIGCSRYPECRYTRPLAVANDENGEAQEGPRELGNDPETSLPVTVRRGPYGAYIQLGPPPVAAAPAEAVAEEAPVDGKKTKGKKKVKVEAPKPKRVSLPKGMAAADVDLDTALKLLALPRSIGNHPETGEDISAGIGRFGPYLKHGSVYKSLTPDDDVLTIGINRAVDLLAGAAKKASAPAKTLGDHPKTGKPVTTGSGRFGPYVKHGSVYASIPKGTEADSVTLEQALELLEAKAAKDAAKKGKAPKEAEPAADGAEAPAKAEKATKAKATAAKKEPAKKDAVKKAAPKKAAAKKPDTAKSDAAKSDAAKSDGDSDEKPAARKRA

Samples

Sample ID Description Type Environment
1 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
2 3300002070 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4 Metagenome Rhizosphere
3 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
4 3300002077 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3 Metagenome Rhizosphere
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
7 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
8 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
14 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
15 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
16 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
17 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
18 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
19 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
20 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
21 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
22 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
23 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
24 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
25 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
26 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
27 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
28 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
29 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
30 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
31 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
32 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
33 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
34 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
35 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
36 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
37 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
38 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
39 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
40 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
41 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
43 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
52 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
53 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
54 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
55 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
56 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
57 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
58 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
59 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
60 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
61 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
62 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
63 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
64 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
65 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
66 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
68 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
70 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
71 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
72 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
73 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
74 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
103 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
106 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
107 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
108 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
109 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
110 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
111 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
112 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
113 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
114 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
115 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
116 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
117 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
118 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
119 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
120 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
121 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
122 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
123 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
124 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
125 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
126 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
127 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
128 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
129 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
130 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
131 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
132 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
133 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
134 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
135 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
136 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
137 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
138 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
139 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
140 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
141 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
142 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
143 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
150 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
151 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
152 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
153 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
154 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
155 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
156 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
157 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
158 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
159 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
160 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
161 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
162 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
163 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
164 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
165 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
166 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
167 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
168 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
169 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
170 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
171 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
172 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
173 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
174 3300053733 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 endosphere Metagenome Endosphere
175 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
176 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
177 2511231221 Azospirillum lipoferum 4B Isolate Rhizosphere
178 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
179 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
180 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
181 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
182 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
183 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
184 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
185 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
186 2919138771 Novosphingobium sp. 1748 Isolate Rhizosphere
187 2946787523 Sphingomonas faeni W4I17 Isolate Rhizosphere
188 3000405567 Rhodobacteraceae bacterium LNNU 3342 Isolate Rhizosphere
189 8054002106 Azospirillum lipoferum 59b Isolate Unclassified
190 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.5
Metatranscriptomes 0.41
Isolates 6.1

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.79
Nodule 0.41
Rhizoplane 0.41
Rhizosphere 78.05
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10006136 3300001989 Bacteria 4540
2 JGI24750J21931_1000381 3300002070 Bacteria 7518
3 JGI24738J21930_10006180 3300002075 Bacteria 2830
4 JGI24744J21845_10002090 3300002077 Bacteria 4050
5 JGI25151J46595_10000911 3300003187 Bacteria 23125
6 JGI25165J46597_1000082 3300003214 Bacteria 174736
7 JGI25153J46596_10000088 3300003215 Bacteria 110970
8 JGI25153J46596_10000128 3300003215 Bacteria 82972
9 rootH2_10002938 3300003320 Bacteria 50511
10 Ga0070658_10000393 3300005327 Bacteria 37936
11 Ga0070658_10001047 3300005327 Bacteria 23636
12 Ga0070676_10000043 3300005328 Bacteria 38508
13 Ga0068869_100000014 3300005334 Bacteria 73206
14 Ga0070680_100043250 3300005336 Bacteria 3659
15 Ga0068868_100000015 3300005338 Bacteria 104058
16 Ga0070660_100000280 3300005339 Bacteria 33943
17 Ga0070668_100013482 3300005347 Bacteria 6102
18 Ga0070668_100038108 3300005347 Bacteria 3672
19 Ga0070669_100003110 3300005353 Bacteria 11947
20 Ga0070671_100000369 3300005355 Bacteria 31156
21 Ga0070674_100000864 3300005356 Bacteria 15750
22 Ga0070673_100000098 3300005364 Bacteria 38913
23 Ga0070659_100017145 3300005366 Bacteria 5445
24 Ga0070709_10000130 3300005434 Bacteria 49643
25 Ga0070714_100000174 3300005435 Bacteria 52266
26 Ga0070713_100000218 3300005436 Bacteria 38024
27 Ga0070681_10005616 3300005458 Bacteria 12120
28 Ga0070681_10022104 3300005458 Bacteria 6384
29 Ga0068867_100000008 3300005459 Bacteria 143488
30 Ga0070707_100052078 3300005468 Bacteria 3924
31 Ga0070698_100010472 3300005471 Bacteria 9894
32 Ga0070679_100000716 3300005530 Bacteria 28574
33 Ga0070679_100048206 3300005530 Bacteria 4245
34 Ga0068853_100015806 3300005539 Bacteria 6197
35 Ga0068853_100026007 3300005539 Bacteria 4913
36 Ga0070665_100000107 3300005548 Bacteria 156048
37 Ga0068855_100000550 3300005563 Bacteria 46029
38 Ga0068855_100008726 3300005563 Bacteria 12253
39 Ga0068857_100010395 3300005577 Bacteria 8088
40 Ga0068854_100001792 3300005578 Bacteria 13085
41 Ga0068856_100002832 3300005614 Bacteria 17765
42 Ga0068852_100004146 3300005616 Bacteria 10210
43 Ga0068851_10000690 3300005834 Bacteria 14376
44 Ga0068863_100059359 3300005841 Bacteria 3619
45 Ga0068862_100019713 3300005844 Bacteria 5631
46 Ga0081455_10000089 3300005937 Bacteria 98248
47 Ga0081455_10010721 3300005937 Bacteria 9269
48 Ga0081539_10003180 3300005985 Bacteria 20800
49 Ga0097621_100032529 3300006237 Bacteria 4147
50 Ga0068865_100000036 3300006881 Bacteria 82943
51 Ga0105251_10000540 3300009011 Bacteria 35672
52 Ga0105240_10010008 3300009093 Bacteria 13357
53 Ga0105240_10020834 3300009093 Bacteria 8732
54 Ga0105240_10158295 3300009093 Bacteria 2692
55 Ga0111539_10000064 3300009094 Bacteria 106969
56 Ga0105245_10003374 3300009098 Bacteria 14312
57 Ga0114129_10100654 3300009147 Bacteria 3999
58 Ga0105243_10000625 3300009148 Bacteria 35272
59 Ga0105248_10010185 3300009177 Bacteria 10354
60 Ga0105237_10004846 3300009545 Bacteria 15460
61 Ga0105237_10006648 3300009545 Bacteria 12780
62 Ga0105239_10000060 3300010375 Bacteria 155195
63 Ga0105239_10087065 3300010375 Bacteria 3443
64 Ga0105239_10116019 3300010375 Bacteria 2971
65 Ga0157371_10022862 3300013102 Bacteria 4574
66 Ga0157370_10000112 3300013104 Bacteria 94316
67 Ga0157370_10001771 3300013104 Bacteria 26622
68 Ga0157370_10011209 3300013104 Bacteria 9401
69 Ga0157369_10025058 3300013105 Bacteria 6625
70 Ga0157374_10000086 3300013296 Bacteria 91348
71 Ga0157374_10001100 3300013296 Bacteria 23248
72 Ga0157378_10001248 3300013297 Bacteria 22962
73 Ga0157372_10028972 3300013307 Bacteria 6041
74 Ga0157375_10009204 3300013308 Bacteria 8660
75 Ga0157380_10000506 3300014326 Bacteria 23836
76 Ga0157376_10000033 3300014969 Bacteria 163952
77 Ga0183363_1010 3300015690 Bacteria 108191
78 Ga0206354_10727992 3300020081 Bacteria 8937
79 Ga0213876_10000414 3300021384 Bacteria 35795
80 Ga0213876_10000910 3300021384 Bacteria 19618
81 Ga0207427_100526 3300025231 Bacteria 19933
82 Ga0209026_1001359 3300025250 Bacteria 10913
83 Ga0209148_1000127 3300025254 Bacteria 181586
84 Ga0209148_1000671 3300025254 Bacteria 28996
85 Ga0209148_1002376 3300025254 Bacteria 6603
86 Ga0209233_1000041 3300025261 Bacteria 515463
87 Ga0209455_1001128 3300025272 Bacteria 12972
88 Ga0209455_1001467 3300025272 Bacteria 10611
89 Ga0209130_1000398 3300025284 Bacteria 47574
90 Ga0209675_1004214 3300025291 Bacteria 6495
91 Ga0209025_1000053 3300025294 Bacteria 317600
92 Ga0209758_1000061 3300025297 Bacteria 320172
93 Ga0209758_1002289 3300025297 Bacteria 19816
94 Ga0207426_1000362 3300025302 Bacteria 81654
95 Ga0209257_1000266 3300025304 Bacteria 119974
96 Ga0207647_10019736 3300025904 Bacteria 4529
97 Ga0207699_10000030 3300025906 Bacteria 138384
98 Ga0207645_10000117 3300025907 Bacteria 60207
99 Ga0207705_10000027 3300025909 Bacteria 248863
100 Ga0207705_10000314 3300025909 Bacteria 44233
101 Ga0207705_10002415 3300025909 Bacteria 14419
102 Ga0207707_10001444 3300025912 Bacteria 21971
103 Ga0207707_10056174 3300025912 Bacteria 3425
104 Ga0207693_10057646 3300025915 Bacteria 3044
105 Ga0207657_10000983 3300025919 Bacteria 30231
106 Ga0207657_10008290 3300025919 Bacteria 10574
107 Ga0207657_10014533 3300025919 Bacteria 7676
108 Ga0207652_10004487 3300025921 Bacteria 11349
109 Ga0207646_10026231 3300025922 Bacteria 5320
110 Ga0207694_10046492 3300025924 Bacteria 3355
111 Ga0207700_10002701 3300025928 Bacteria 10223
112 Ga0207664_10007650 3300025929 Bacteria 7495
113 Ga0207664_10033311 3300025929 Bacteria 3957
114 Ga0207644_10000518 3300025931 Bacteria 24946
115 Ga0207690_10009910 3300025932 Bacteria 5658
116 Ga0207690_10027324 3300025932 Bacteria 3606
117 Ga0207709_10000102 3300025935 Bacteria 132562
118 Ga0207704_10000014 3300025938 Bacteria 164052
119 Ga0207689_10000364 3300025942 Bacteria 42763
120 Ga0207667_10000072 3300025949 Bacteria 177312
121 Ga0207667_10016570 3300025949 Bacteria 8322
122 Ga0207651_10000015 3300025960 Bacteria 164178
123 Ga0207640_10000310 3300025981 Bacteria 32549
124 Ga0207677_10000097 3300026023 Bacteria 71753
125 Ga0207703_10000985 3300026035 Bacteria 27423
126 Ga0207702_10003314 3300026078 Bacteria 14805
127 Ga0207641_10001907 3300026088 Bacteria 20027
128 Ga0207648_10000014 3300026089 Bacteria 163862
129 Ga0207674_10009178 3300026116 Bacteria 11342
130 Ga0207698_10004277 3300026142 Bacteria 8694
131 Ga0207428_10000072 3300027907 Bacteria 143629
132 Ga0268266_10001429 3300028379 Bacteria 28467
133 Ga0268266_10029691 3300028379 Bacteria 4646
134 Ga0268264_10014261 3300028381 Bacteria 6533
135 Ga0265318_10000109 3300028577 Bacteria 77225
136 Ga0265328_10003636 3300031239 Bacteria 6800
137 Ga0265320_10000960 3300031240 Bacteria 21445
138 Ga0265331_10000129 3300031250 Bacteria 99170
139 Ga0265331_10000156 3300031250 Bacteria 87128
140 Ga0265331_10001423 3300031250 Bacteria 17556
141 Ga0265331_10013495 3300031250 Bacteria 4388
142 Ga0265327_10002988 3300031251 Bacteria 16792
143 Ga0265327_10007623 3300031251 Bacteria 8299
144 Ga0265313_10000265 3300031595 Bacteria 57291
145 Ga0265313_10006287 3300031595 Bacteria 8458
146 Ga0265314_10018330 3300031711 Bacteria 5460
147 Ga0307411_10005182 3300032005 Bacteria 6374
148 Ga0373937_0000528 3300036401 Bacteria 34160
149 Ga0373925_0035348 3300037068 Bacteria 3686
150 Ga0395899_0011651 3300037312 Bacteria 6729
151 Ga0395900_0007191 3300037418 Bacteria 11537
152 Ga0395900_0053881 3300037418 Bacteria 4141
153 Ga0395901_0014403 3300038443 Bacteria 8049
154 Ga0400483_037067 3300039062 Bacteria 4373
155 Ga0436365_0053006 3300039437 Bacteria 19049
156 Ga0436365_0376847 3300039437 Bacteria 89580
157 Ga0436365_1596642 3300039437 Bacteria 39428
158 Ga0436360_0006170 3300039438 Bacteria 4360
159 Ga0436361_0871780 3300039447 Bacteria 6755
160 Ga0439448_0001437 3300042005 Bacteria 6163
161 Ga0439458_0000637 3300042157 Bacteria 9073
162 Ga0451577_0010700 3300042876 Bacteria 8735
163 Ga0453684_0000015 3300044712 Bacteria 969198
164 Ga0453684_0000020 3300044712 Bacteria 879938
165 Ga0453684_0022654 3300044712 Bacteria 9307
166 Ga0453684_0025746 3300044712 Bacteria 8530
167 Ga0453684_0042926 3300044712 Bacteria 6087
168 Ga0451576_0000094 3300045051 Bacteria 225875
169 Ga0466958_0014507 3300045836 Bacteria 4498
170 Ga0495583_0000038 3300046506 Bacteria 243395
171 Ga0495616_0001750 3300046513 Bacteria 14775
172 Ga0495648_0013498 3300046524 Bacteria 6032
173 Ga0495663_0013429 3300046525 Bacteria 2290
174 Ga0495654_0002192 3300046530 Bacteria 12667
175 Ga0495621_0004733 3300046539 Bacteria 3859
176 Ga0495668_0014257 3300046616 Bacteria 4665
177 Ga0495625_0000031 3300046660 Bacteria 238193
178 Ga0495670_0008621 3300046691 Bacteria 5019
179 Ga0495686_0001180 3300047472 Bacteria 30452
180 Ga0496103_0012191 3300048906 Bacteria 5106
181 Ga0496117_0018179 3300048920 Bacteria 5836
182 Ga0496118_0017423 3300048921 Bacteria 6538
183 Ga0496118_0020750 3300048921 Bacteria 5817
184 Ga0496121_0013505 3300048924 Bacteria 8766
185 Ga0496125_0015411 3300048928 Bacteria 7397
186 Ga0496125_0018624 3300048928 Bacteria 6590
187 Ga0501032_0000002 3300049569 Bacteria 335417
188 Ga0501034_0000001 3300049571 Bacteria 2184493
189 Ga0501034_0002039 3300049571 Bacteria 25369
190 Ga0501034_0003845 3300049571 Bacteria 16923
191 Ga0501034_0032308 3300049571 Bacteria 5316
192 Ga0501034_0108046 3300049571 Bacteria 2773
193 Ga0501037_0002114 3300049573 Bacteria 14393
194 Ga0501038_0000011 3300049574 Bacteria 181217
195 Ga0501039_0000047 3300049575 Bacteria 102013
196 Ga0501040_0001885 3300049576 Bacteria 13456
197 Ga0501042_0015783 3300049578 Bacteria 5175
198 Ga0501047_0003189 3300049581 Bacteria 15547
199 Ga0501047_0007072 3300049581 Bacteria 10538
200 Ga0501070_0016353 3300049586 Bacteria 6231
201 Ga0501072_0026705 3300049588 Bacteria 4503
202 Ga0501073_0000119 3300049589 Bacteria 50663
203 Ga0501073_0006181 3300049589 Bacteria 8938
204 Ga0501073_0015625 3300049589 Bacteria 5507
205 Ga0501073_0038779 3300049589 Bacteria 3378
206 Ga0501074_0008036 3300049590 Bacteria 7641
207 Ga0501079_0000287 3300049741 Bacteria 31113
208 Ga0501080_0010626 3300049742 Bacteria 8428
209 Ga0501080_0022225 3300049742 Bacteria 5876
210 Ga0501083_0000594 3300049744 Bacteria 23243
211 Ga0501083_0024238 3300049744 Bacteria 4205
212 Ga0501044_0024117 3300049823 Bacteria 6462
213 Ga0501044_0034198 3300049823 Bacteria 5333
214 nmdc:mga03683_3458_c1 3300050489 Bacteria 5099
215 nmdc:mga05p37_97313_c1 3300050507 Bacteria 3625
216 nmdc:mga08y16_38_c1 3300050511 Bacteria 135093
217 nmdc:mga08x19_412_c1 3300050514 Bacteria 29897
218 nmdc:mga0sz30_2004_c1 3300050516 Bacteria 7280
219 Ga0495601_0030906 3300053077 Bacteria 3327
220 Ga0495595_0009285 3300053084 Bacteria 4062
221 Ga0495619_0002503 3300053085 Bacteria 12032
222 Ga0500643_006298 3300053087 Bacteria 4979
223 Ga0500641_0003232 3300053096 Bacteria 5759
224 Ga0500592_000252 3300053116 Bacteria 9612
225 Ga0500595_000674 3300053119 Bacteria 20441
226 Ga0500642_0001582 3300053130 Bacteria 6569
227 Ga0500642_0005647 3300053130 Bacteria 4056
228 Ga0500616_0000824 3300053153 Bacteria 35140
229 Ga0500627_0009049 3300053158 Bacteria 3569
230 Ga0500552_000053 3300053733 Bacteria 9699
231 Ga0501082_0032911 3300060353 Bacteria 4471
232 2599106190 2597490356 Bacteria 7030811
233 2512033628 2511231221 Bacteria 6846400
234 2523102679 2522572158 Bacteria 6514390
235 2524610804 2524023250 Bacteria 5457705
236 2821444215 2821443989 Bacteria 7658172
237 2842334737 2842333319 Bacteria 8899485
238 2844536705 2844533157 Bacteria 7517899
239 2846955988 2846952575 Bacteria 6587527
240 2848862261 2848858292 Bacteria 7391279
241 2897803711 2897803580 Bacteria 7000062
242 2919142647 2919138771 Bacteria 5281312
243 2946790132 2946787523 Bacteria 4366789
244 3000409264 3000405567 Bacteria 3779330
245 8054004764 8054002106 Bacteria 7987183
246 8054302582 8054302542 Bacteria 5698134
247 JGI24739J22299_10006136
248 JGI24750J21931_1000381
249 JGI24738J21930_10006180
250 JGI24744J21845_10002090
251 JGI25151J46595_10000911
252 JGI25165J46597_1000082
253 JGI25153J46596_10000088
254 JGI25153J46596_10000128
255 rootH2_10002938
256 Ga0070658_10000393
257 Ga0070658_10001047
258 Ga0070676_10000043
259 Ga0068869_100000014
260 Ga0070680_100043250
261 Ga0068868_100000015
262 Ga0070660_100000280
263 Ga0070668_100013482
264 Ga0070668_100038108
265 Ga0070669_100003110
266 Ga0070671_100000369
267 Ga0070674_100000864
268 Ga0070673_100000098
269 Ga0070659_100017145
270 Ga0070709_10000130
271 Ga0070714_100000174
272 Ga0070713_100000218
273 Ga0070681_10005616
274 Ga0070681_10022104
275 Ga0068867_100000008
276 Ga0070707_100052078
277 Ga0070698_100010472
278 Ga0070679_100000716
279 Ga0070679_100048206
280 Ga0068853_100015806
281 Ga0068853_100026007
282 Ga0070665_100000107
283 Ga0068855_100000550
284 Ga0068855_100008726
285 Ga0068857_100010395
286 Ga0068854_100001792
287 Ga0068856_100002832
288 Ga0068852_100004146
289 Ga0068851_10000690
290 Ga0068863_100059359
291 Ga0068862_100019713
292 Ga0081455_10000089
293 Ga0081455_10010721
294 Ga0081539_10003180
295 Ga0097621_100032529
296 Ga0068865_100000036
297 Ga0105251_10000540
298 Ga0105240_10010008
299 Ga0105240_10020834
300 Ga0105240_10158295
301 Ga0111539_10000064
302 Ga0105245_10003374
303 Ga0114129_10100654
304 Ga0105243_10000625
305 Ga0105248_10010185
306 Ga0105237_10004846
307 Ga0105237_10006648
308 Ga0105239_10000060
309 Ga0105239_10087065
310 Ga0105239_10116019
311 Ga0157371_10022862
312 Ga0157370_10000112
313 Ga0157370_10001771
314 Ga0157370_10011209
315 Ga0157369_10025058
316 Ga0157374_10000086
317 Ga0157374_10001100
318 Ga0157378_10001248
319 Ga0157372_10028972
320 Ga0157375_10009204
321 Ga0157380_10000506
322 Ga0157376_10000033
323 Ga0183363_1010
324 Ga0206354_10727992
325 Ga0213876_10000414
326 Ga0213876_10000910
327 Ga0207427_100526
328 Ga0209026_1001359
329 Ga0209148_1000127
330 Ga0209148_1000671
331 Ga0209148_1002376
332 Ga0209233_1000041
333 Ga0209455_1001128
334 Ga0209455_1001467
335 Ga0209130_1000398
336 Ga0209675_1004214
337 Ga0209025_1000053
338 Ga0209758_1000061
339 Ga0209758_1002289
340 Ga0207426_1000362
341 Ga0209257_1000266
342 Ga0207647_10019736
343 Ga0207699_10000030
344 Ga0207645_10000117
345 Ga0207705_10000027
346 Ga0207705_10000314
347 Ga0207705_10002415
348 Ga0207707_10001444
349 Ga0207707_10056174
350 Ga0207693_10057646
351 Ga0207657_10000983
352 Ga0207657_10008290
353 Ga0207657_10014533
354 Ga0207652_10004487
355 Ga0207646_10026231
356 Ga0207694_10046492
357 Ga0207700_10002701
358 Ga0207664_10007650
359 Ga0207664_10033311
360 Ga0207644_10000518
361 Ga0207690_10009910
362 Ga0207690_10027324
363 Ga0207709_10000102
364 Ga0207704_10000014
365 Ga0207689_10000364
366 Ga0207667_10000072
367 Ga0207667_10016570
368 Ga0207651_10000015
369 Ga0207640_10000310
370 Ga0207677_10000097
371 Ga0207703_10000985
372 Ga0207702_10003314
373 Ga0207641_10001907
374 Ga0207648_10000014
375 Ga0207674_10009178
376 Ga0207698_10004277
377 Ga0207428_10000072
378 Ga0268266_10001429
379 Ga0268266_10029691
380 Ga0268264_10014261
381 Ga0265318_10000109
382 Ga0265328_10003636
383 Ga0265320_10000960
384 Ga0265331_10000129
385 Ga0265331_10000156
386 Ga0265331_10001423
387 Ga0265331_10013495
388 Ga0265327_10002988
389 Ga0265327_10007623
390 Ga0265313_10000265
391 Ga0265313_10006287
392 Ga0265314_10018330
393 Ga0307411_10005182
394 Ga0373937_0000528
395 Ga0373925_0035348
396 Ga0395899_0011651
397 Ga0395900_0007191
398 Ga0395900_0053881
399 Ga0395901_0014403
400 Ga0400483_037067
401 Ga0436365_0053006
402 Ga0436365_0376847
403 Ga0436365_1596642
404 Ga0436360_0006170
405 Ga0436361_0871780
406 Ga0439448_0001437
407 Ga0439458_0000637
408 Ga0451577_0010700
409 Ga0453684_0000015
410 Ga0453684_0000020
411 Ga0453684_0022654
412 Ga0453684_0025746
413 Ga0453684_0042926
414 Ga0451576_0000094
415 Ga0466958_0014507
416 Ga0495583_0000038
417 Ga0495616_0001750
418 Ga0495648_0013498
419 Ga0495663_0013429
420 Ga0495654_0002192
421 Ga0495621_0004733
422 Ga0495668_0014257
423 Ga0495625_0000031
424 Ga0495670_0008621
425 Ga0495686_0001180
426 Ga0496103_0012191
427 Ga0496117_0018179
428 Ga0496118_0017423
429 Ga0496118_0020750
430 Ga0496121_0013505
431 Ga0496125_0015411
432 Ga0496125_0018624
433 Ga0501032_0000002
434 Ga0501034_0000001
435 Ga0501034_0002039
436 Ga0501034_0003845
437 Ga0501034_0032308
438 Ga0501034_0108046
439 Ga0501037_0002114
440 Ga0501038_0000011
441 Ga0501039_0000047
442 Ga0501040_0001885
443 Ga0501042_0015783
444 Ga0501047_0003189
445 Ga0501047_0007072
446 Ga0501070_0016353
447 Ga0501072_0026705
448 Ga0501073_0000119
449 Ga0501073_0006181
450 Ga0501073_0015625
451 Ga0501073_0038779
452 Ga0501074_0008036
453 Ga0501079_0000287
454 Ga0501080_0010626
455 Ga0501080_0022225
456 Ga0501083_0000594
457 Ga0501083_0024238
458 Ga0501044_0024117
459 Ga0501044_0034198
460 nmdc:mga03683_3458_c1
461 nmdc:mga05p37_97313_c1
462 nmdc:mga08y16_38_c1
463 nmdc:mga08x19_412_c1
464 nmdc:mga0sz30_2004_c1
465 Ga0495601_0030906
466 Ga0495595_0009285
467 Ga0495619_0002503
468 Ga0500643_006298
469 Ga0500641_0003232
470 Ga0500592_000252
471 Ga0500595_000674
472 Ga0500642_0001582
473 Ga0500642_0005647
474 Ga0500616_0000824
475 Ga0500627_0009049
476 Ga0500552_000053
477 Ga0501082_0032911
478 2599106190
479 2512033628
480 2523102679
481 2524610804
482 2821444215
483 2842334737
484 2844536705
485 2846955988
486 2848862261
487 2897803711
488 2919142647
489 2946790132
490 3000409264
491 8054004764
492 8054302582

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13368

Toprim_C_rpt

Topoisomerase C-terminal repeat

660

748

0.96

PF01396

zf-C4_Topoisom

Topoisomerase DNA binding C4 zinc finger

604

642

0.95

PF13368

Toprim_C_rpt

Topoisomerase C-terminal repeat

811

867

0.95

PF13368

Toprim_C_rpt

Topoisomerase C-terminal repeat

749

805

0.94

PF01131

Topoisom_bac

DNA topoisomerase

128

557

0.92

PF01751

Toprim

Toprim domain

1

114

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
1cy2-assembly1.cif.gz_A complex of e.coli dna topoisomerase i with tptptp3' 0.8898 2 543
1cy1-assembly1.cif.gz_A complex of e.coli dna topoisomerase i with 5'ptptpt 0.8842 2 543
3pwt-assembly1.cif.gz_A crystal structure of mutant e.coli topoisomerase ia 0.8836 2 543
1mw8-assembly1.cif.gz_X crystal structure of a complex between h365r mutant of 67 kda n-terminal fragment of e. coli dna topoisomerase i and 5'-acttcgggatg-3' 0.8814 2 543
1cy8-assembly1.cif.gz_A complex of e.coli dna topoisomerase i with 5'-thymidine monophosphate and 3'-thymidine monophosphate 0.8799 2 543
ID Description Score Start End Superfamily
5uj1A02 Mainly Alpha;Orthogonal Bundle;Topoisomerase I; domain 2;Topoisomerase I, domain 2 0.9813 436 530 1.10.460.10
1cy2A02 Mainly Alpha;Orthogonal Bundle;Topoisomerase I; domain 2;Topoisomerase I, domain 2 0.974 436 543 1.10.460.10
2gaiB02 Mainly Alpha;Orthogonal Bundle;Topoisomerase I; domain 2;Topoisomerase I, domain 2 0.9703 437 532 1.10.460.10
af_A0A1D6LWZ0_306_445_3.40.50.140 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9677 2 134 3.40.50.140
1cy0A02 Mainly Alpha;Orthogonal Bundle;Topoisomerase I; domain 2;Topoisomerase I, domain 2 0.9628 436 532 1.10.460.10
ID Description Score Start End GO Terms
AF-A0A520HXF8-F1-model_v4 Omega-protein (Relaxing enzyme) (Swivelase) (Untwisting enzyme) 0.9934 1 159 GO:0003677
GO:0003917
GO:0006265
AF-A0A520HXF8-F1-model_v4 Omega-protein (Relaxing enzyme) (Swivelase) (Untwisting enzyme) 0.9872 1 159 GO:0003677
GO:0003917
GO:0006265
AF-A0A539EA23-F1-model_v4 Omega-protein (Relaxing enzyme) (Swivelase) (Untwisting enzyme) 0.9831 2 149 GO:0003677
GO:0003917
GO:0006265
AF-A0A855K9A4-F1-model_v4 Toprim domain-containing protein 0.983 29 113 GO:0003677
GO:0003917
GO:0006265
AF-A0A530R615-F1-model_v4 DNA topoisomerase I 0.9808 1 145 GO:0003677
GO:0003917
GO:0006265

Map