F358602

General Info

Members Datasets Scaffolds Average Seq Length
246 178 492 761

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2675902999|2676200903
Length 901
Sequence IPVTTGGGQLPASGPTTGPPPERRRGLPRTGTQGGGTRAAGEDAGAAAPTGAERPATEPETAGNGAPVAGPAAASGPAGGDGGAGGDSAGGATSGNGGAASGASVVAVGGGVLAGGPVPDELPEDGAPVQPRLGHESPPLPRRLRSRLSRLSPHRETPPSALDPVLRGLLTNHPKADIGPVQLAFQVADEAHAGQVRASGHPYITHPIAVASILADLGMDVPTLCAALLHDTLEETTLTVDAIREQFGDQVALIVDAVSRLQKVNAGEMAQAEMIRRMVIAMARDPRALVVKLSDRLHNMXTLRFLPEHRQERKARQTLEVYAPLAHRLGMNSLKWELEDLSFAALYPKRYDEIVRLVADRAPSRDVYLADVTAGVQSYLSEAGIPSVVVGRPKHYYSIYQKMVVRGRSFDDIYDLVGIRVLVDSVRDCYAALGTVHANWKPIPGRFKDYIAMPKYNMYQSLHTTVIGPEGKPVELQIRTHGMHNRAEYGIAAHWKYKEEGRAASRRRGGGDEPDLARSRRRGGGEPDLASWLRQILDWQRESADPGEFLDSLRFEAPADEVFVFTPKGDVVALPAGSTPIDFAYAVHTDVGNQCVGARINGRIVTLDTELDNGDTVEVFTSRAQGAGPSEDWLTFVRSSRARSKIRQWHARERREDAVVAGRDAIARSLRRHNLPLTRLMTGEGLLSLAKDLRYADVSALYAAVGENNISAQAVVNRLLTAMGSPEATEEDVADTALPIRPLRRSAGDPGVLVSGASDIWVKLARCCTPMPGDEITGLVTRGRGVSVHRTDCANVGDPANPTADRQVSVEWAPSSGSVFLVVIQVEAMDRAKLLSDVTRVLSDHHVNILSASVTTNRENVAISRFTFEMGDAKHLGQVLGAVRRIEGVYDCFRVTSGVQA

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
3 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
15 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
16 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
20 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
21 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
22 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
23 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
28 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
29 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
30 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
31 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
32 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
33 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
34 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
35 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
53 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
54 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
55 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
56 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
57 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
58 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
59 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
60 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
61 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
62 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
63 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
64 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
65 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
66 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
67 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
68 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
69 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
70 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
71 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
72 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
75 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
76 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
77 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
78 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
79 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
80 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
81 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
82 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
83 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
84 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
85 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
86 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
87 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
88 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
89 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
90 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
91 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
92 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
93 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
94 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
95 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
96 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
97 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
98 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
99 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
100 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
101 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
102 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
103 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
104 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
105 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
106 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
107 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
108 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
118 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
119 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
120 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
121 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
122 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
123 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
124 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
125 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
126 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
127 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
128 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
129 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
130 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
131 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
132 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
133 2675902999 Frankia asymbiotica NRRL B-16386 Isolate Nodule
134 2506783011 Frankia datiscae Dg1 Isolate Nodule
135 2508501039 Frankia saprophytica CN3 Isolate Nodule
136 2517572101 Frankia sp. DC12 Isolate Nodule
137 2527291627 Frankia casuarinae Thr Isolate Nodule
138 2527291629 Frankia sp. BMG5.23 Isolate Nodule
139 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
140 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
141 2576861822 Frankia sp. CeD Isolate Nodule
142 2579778521 Frankia torreyi CpI1-S Isolate Unclassified
143 2619618881 Frankia sp. ACN1ag Isolate Unclassified
144 2619619003 Frankia sp. CpI1-P Isolate Nodule
145 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
146 2626541554 Frankia sp. AvcI.1 Isolate Nodule
147 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
148 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
149 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
150 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
151 2643221694 Cellulomonas sp. Root137 Isolate Unclassified
152 2643221722 Cellulomonas sp. Root930 Isolate Unclassified
153 2654587600 Glutamicibacter halophytocola KLBMP5180 Isolate Unclassified
154 2671180195 Frankia sp. CcI49 Isolate Nodule
155 2684623035 Frankia sp. NRRL B-16219 Isolate Rhizosphere
156 2684623036 Frankia sp. CgIM4 Isolate Nodule
157 2687453737 Frankia sp. BMG5.36 Isolate Nodule
158 2687453743 Frankia colletiae Cc1.17 Isolate Nodule
159 2710264753 Frankia sp. KB5 Isolate Nodule
160 2739367898 Nocardioides sp. CF479 Isolate Unclassified
161 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
162 2773857922 Frankia sp. CcI49 Isolate Nodule
163 2773857924 Frankia sp. CgIS1 Isolate Nodule
164 2773857933 Frankia sp. BMG5.30 Isolate Nodule
165 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
166 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
167 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
168 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
169 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
170 2939615513 Lactococcus lactis 1925 Isolate Rhizosphere
171 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
172 637000116 Frankia casuarinae CcI3 Isolate Nodule
173 8002775197 Frankia nepalensis CN7 Isolate Nodule
174 8002784119 Frankia sp. AgB1.9 Isolate Nodule
175 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
176 8054913762 Frankia gtarii Agncl-10 Isolate Nodule
177 8054920844 Frankia tisae Agncl-8 Isolate Nodule
178 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 80.89
Metatranscriptomes 0.41
Isolates 18.7

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.41
Nodule 9.76
Rhizoplane 4.47
Rhizosphere 74.39
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10005895 3300005327 Bacteria 9940
2 Ga0070658_10019809 3300005327 Bacteria 5388
3 Ga0070658_10056904 3300005327 Bacteria 3180
4 Ga0070659_100000127 3300005366 Bacteria 57549
5 Ga0070709_10000283 3300005434 Bacteria 32257
6 Ga0070714_100000403 3300005435 Bacteria 31860
7 Ga0070714_100001584 3300005435 Bacteria 16523
8 Ga0070713_100003491 3300005436 Bacteria 10371
9 Ga0070713_100004912 3300005436 Bacteria 9074
10 Ga0070710_10000160 3300005437 Bacteria 31176
11 Ga0070708_100002356 3300005445 Bacteria 14625
12 Ga0070708_100003372 3300005445 Bacteria 12516
13 Ga0070708_100103353 3300005445 Bacteria 2612
14 Ga0070681_10009958 3300005458 Bacteria 9371
15 Ga0070681_10022198 3300005458 Bacteria 6371
16 Ga0070706_100000867 3300005467 Bacteria 33269
17 Ga0070706_100004922 3300005467 Bacteria 12783
18 Ga0070706_100007629 3300005467 Bacteria 10126
19 Ga0070707_100004689 3300005468 Bacteria 12810
20 Ga0070707_100012449 3300005468 Bacteria 7946
21 Ga0070707_100013518 3300005468 Bacteria 7637
22 Ga0070707_100039900 3300005468 Bacteria 4490
23 Ga0070698_100003847 3300005471 Bacteria 16510
24 Ga0070698_100015888 3300005471 Bacteria 7948
25 Ga0070698_100029303 3300005471 Bacteria 5713
26 Ga0070679_100103022 3300005530 Bacteria 2840
27 Ga0068859_100000042 3300005617 Bacteria 158982
28 Ga0068863_100001046 3300005841 Bacteria 27696
29 Ga0068858_100000036 3300005842 Bacteria 138467
30 Ga0068858_100000068 3300005842 Bacteria 105957
31 Ga0068858_100002449 3300005842 Bacteria 18744
32 Ga0068862_100000623 3300005844 Bacteria 36811
33 Ga0081455_10000115 3300005937 Bacteria 91703
34 Ga0081539_10007844 3300005985 Bacteria 9534
35 Ga0070717_10002215 3300006028 Bacteria 13665
36 Ga0070717_10005279 3300006028 Bacteria 9419
37 Ga0070717_10024113 3300006028 Bacteria 4827
38 Ga0070716_100001026 3300006173 Bacteria 12218
39 Ga0070712_100001077 3300006175 Bacteria 16458
40 Ga0097620_100000042 3300006931 Bacteria 158982
41 Ga0099794_10004089 3300007265 Bacteria 5676
42 Ga0105240_10080294 3300009093 Bacteria 4012
43 Ga0105247_10000041 3300009101 Bacteria 158571
44 Ga0105247_10002489 3300009101 Bacteria 12520
45 Ga0114129_10061352 3300009147 Bacteria 5254
46 Ga0105248_10000153 3300009177 Bacteria 80607
47 Ga0105248_10000195 3300009177 Bacteria 70232
48 Ga0105248_10005313 3300009177 Bacteria 14178
49 Ga0157371_10012474 3300013102 Bacteria 6493
50 Ga0157369_10006587 3300013105 Bacteria 13428
51 Ga0157369_10007928 3300013105 Bacteria 12210
52 Ga0157369_10075701 3300013105 Bacteria 3608
53 Ga0157372_10029976 3300013307 Bacteria 5946
54 Ga0163163_10006735 3300014325 Bacteria 10068
55 Ga0157379_10000014 3300014968 Bacteria 105963
56 Ga0157379_10002143 3300014968 Bacteria 16372
57 Ga0213875_10000176 3300021388 Bacteria 67409
58 Ga0224712_10013648 3300022467 Bacteria 2593
59 Ga0207710_10000012 3300025900 Bacteria 409603
60 Ga0207710_10000038 3300025900 Bacteria 241794
61 Ga0207699_10000332 3300025906 Bacteria 25007
62 Ga0207705_10051410 3300025909 Bacteria 2966
63 Ga0207684_10000595 3300025910 Bacteria 43323
64 Ga0207684_10000615 3300025910 Bacteria 42433
65 Ga0207684_10000918 3300025910 Bacteria 33417
66 Ga0207684_10029260 3300025910 Bacteria 4693
67 Ga0207693_10002177 3300025915 Bacteria 17077
68 Ga0207663_10038303 3300025916 Bacteria 2897
69 Ga0207652_10042573 3300025921 Bacteria 3866
70 Ga0207646_10000913 3300025922 Bacteria 38056
71 Ga0207646_10019410 3300025922 Bacteria 6320
72 Ga0207700_10000139 3300025928 Bacteria 43579
73 Ga0207700_10013666 3300025928 Bacteria 5291
74 Ga0207664_10000108 3300025929 Bacteria 72754
75 Ga0207664_10000355 3300025929 Bacteria 33567
76 Ga0207664_10013206 3300025929 Bacteria 5918
77 Ga0207664_10016684 3300025929 Bacteria 5363
78 Ga0207664_10022600 3300025929 Bacteria 4700
79 Ga0207690_10000653 3300025932 Bacteria 22186
80 Ga0207665_10000153 3300025939 Bacteria 46744
81 Ga0207711_10001562 3300025941 Bacteria 21166
82 Ga0207711_10003062 3300025941 Bacteria 14603
83 Ga0207703_10000063 3300026035 Bacteria 127040
84 Ga0207703_10000083 3300026035 Bacteria 110315
85 Ga0207703_10012805 3300026035 Bacteria 6539
86 Ga0207702_10047900 3300026078 Bacteria 3603
87 Ga0207641_10001321 3300026088 Bacteria 24537
88 Ga0268265_10000066 3300028380 Bacteria 142517
89 Ga0265337_1006824 3300028556 Bacteria 4344
90 Ga0265326_10000711 3300028558 Bacteria 12291
91 Ga0265334_10005386 3300028573 Bacteria 5590
92 Ga0265338_10000859 3300028800 Bacteria 51384
93 Ga0265338_10002286 3300028800 Bacteria 29188
94 Ga0265320_10000238 3300031240 Bacteria 45232
95 Ga0265320_10006125 3300031240 Bacteria 7617
96 Ga0316576_10003089 3300031727 Bacteria 9706
97 Ga0316578_10009986 3300031728 Bacteria 4909
98 Ga0316578_10035190 3300031728 Bacteria 2878
99 Ga0307409_100001330 3300031995 Bacteria 11991
100 Ga0373955_0016664 3300035172 Bacteria 3621
101 Ga0316574_0000938 3300035398 Bacteria 13023
102 Ga0373937_0075162 3300036401 Bacteria 3118
103 Ga0316584_0006914 3300036712 Bacteria 7713
104 Ga0373925_0000030 3300037068 Bacteria 146196
105 Ga0373925_0006408 3300037068 Bacteria 8663
106 Ga0395900_0014692 3300037418 Bacteria 7986
107 Ga0395898_0016907 3300037466 Bacteria 7446
108 Ga0395905_0074725 3300037471 Bacteria 3177
109 Ga0436364_0875353 3300037853 Bacteria 55373
110 Ga0395901_0005961 3300038443 Bacteria 12341
111 Ga0395901_0029898 3300038443 Bacteria 5611
112 Ga0400483_062577 3300039062 Bacteria 66463
113 Ga0400483_229655 3300039062 Bacteria 22942
114 Ga0451577_0000141 3300042876 Bacteria 161372
115 Ga0451577_0168571 3300042876 Bacteria 1973
116 Ga0453683_0000007 3300044673 Bacteria 581341
117 Ga0453683_0000580 3300044673 Bacteria 40538
118 Ga0453684_0000463 3300044712 Bacteria 161665
119 Ga0453684_0001850 3300044712 Bacteria 55234
120 Ga0453684_0010286 3300044712 Bacteria 16020
121 Ga0453684_0041602 3300044712 Bacteria 6211
122 Ga0453684_0096372 3300044712 Bacteria 3635
123 Ga0451576_0000155 3300045051 Bacteria 175508
124 Ga0495592_0056878 3300046454 Bacteria 2888
125 Ga0495603_0028784 3300046455 Bacteria 3352
126 Ga0495585_0008272 3300046492 Bacteria 6315
127 Ga0495594_0000219 3300046499 Bacteria 27912
128 Ga0495608_0001749 3300046511 Bacteria 15518
129 Ga0495644_0000041 3300046523 Bacteria 60975
130 Ga0495648_0046814 3300046524 Bacteria 2678
131 Ga0495652_0028611 3300046529 Bacteria 4901
132 Ga0495609_0005607 3300046538 Bacteria 6545
133 Ga0495667_0000427 3300046559 Bacteria 26926
134 Ga0495657_0001402 3300046675 Bacteria 20876
135 Ga0495646_0020154 3300046680 Bacteria 4216
136 Ga0495600_0003697 3300046809 Bacteria 9038
137 Ga0495604_0007425 3300047317 Bacteria 8683
138 Ga0495674_0013036 3300047319 Bacteria 7825
139 Ga0495680_0000660 3300047322 Bacteria 38648
140 Ga0495684_0018212 3300047471 Bacteria 5413
141 Ga0495686_0001533 3300047472 Bacteria 24770
142 Ga0495602_0015422 3300048088 Bacteria 7712
143 Ga0496102_0001140 3300048905 Bacteria 24358
144 Ga0496103_0011640 3300048906 Bacteria 5217
145 Ga0496109_0062773 3300048912 Bacteria 3398
146 Ga0496109_0077774 3300048912 Bacteria 3053
147 Ga0496110_0014376 3300048913 Bacteria 6571
148 Ga0496110_0042086 3300048913 Bacteria 3987
149 Ga0496112_0071618 3300048915 Bacteria 3426
150 Ga0496114_0010648 3300048917 Bacteria 7319
151 Ga0496115_0003169 3300048918 Bacteria 11823
152 Ga0496115_0027746 3300048918 Bacteria 4432
153 Ga0496116_0000150 3300048919 Bacteria 141440
154 Ga0496117_0000060 3300048920 Bacteria 258500
155 Ga0496118_0032144 3300048921 Bacteria 4332
156 Ga0496119_0001709 3300048922 Bacteria 25586
157 Ga0496119_0002359 3300048922 Bacteria 20786
158 Ga0496120_0000340 3300048923 Bacteria 77467
159 Ga0496121_0017690 3300048924 Bacteria 7256
160 Ga0496121_0021082 3300048924 Bacteria 6403
161 Ga0496126_0001168 3300048929 Bacteria 43240
162 Ga0496126_0011235 3300048929 Bacteria 9290
163 Ga0501031_0068281 3300049568 Bacteria 2315
164 Ga0501034_0030618 3300049571 Bacteria 5469
165 Ga0501036_0018271 3300049572 Bacteria 5871
166 Ga0501038_0038484 3300049574 Bacteria 4188
167 Ga0501039_0038284 3300049575 Bacteria 3704
168 Ga0501040_0048845 3300049576 Bacteria 2892
169 Ga0501041_0010195 3300049577 Bacteria 5538
170 Ga0501042_0004632 3300049578 Bacteria 8777
171 Ga0501042_0021780 3300049578 Bacteria 4470
172 Ga0501047_0095721 3300049581 Bacteria 2848
173 Ga0501067_0022383 3300049583 Bacteria 3498
174 Ga0501071_0002901 3300049587 Bacteria 10571
175 Ga0501071_0019246 3300049587 Bacteria 4736
176 Ga0501071_0022386 3300049587 Bacteria 4406
177 Ga0501072_0005965 3300049588 Bacteria 9286
178 Ga0501074_0015168 3300049590 Bacteria 5603
179 Ga0501074_0028204 3300049590 Bacteria 4068
180 Ga0501075_0025082 3300049591 Bacteria 4378
181 Ga0501076_0024092 3300049592 Bacteria 4701
182 Ga0501076_0039503 3300049592 Bacteria 3704
183 Ga0501076_0068366 3300049592 Bacteria 2837
184 Ga0501077_0015581 3300049593 Bacteria 4786
185 Ga0501077_0035394 3300049593 Bacteria 3178
186 Ga0501079_0016887 3300049741 Bacteria 5574
187 Ga0501080_0019495 3300049742 Bacteria 6282
188 Ga0501080_0036946 3300049742 Bacteria 4560
189 Ga0501080_0073315 3300049742 Bacteria 3185
190 Ga0501081_0008985 3300049743 Bacteria 6495
191 Ga0501081_0035220 3300049743 Bacteria 3407
192 Ga0501045_0009780 3300049824 Bacteria 6707
193 Ga0501045_0015543 3300049824 Bacteria 5399
194 nmdc:mga05p37_217508_c1 3300050507 Bacteria 2307
195 nmdc:mga05p37_43789_c1 3300050507 Bacteria 5507
196 Ga0495595_0013625 3300053084 Bacteria 3437
197 Ga0500643_000978 3300053087 Bacteria 17644
198 Ga0501084_0002242 3300054114 Bacteria 15513
199 Ga0501084_0042276 3300054114 Bacteria 3812
200 Ga0501082_0006118 3300060353 Bacteria 10448
201 2676200903 2675902999 Bacteria 9438463
202 2506867096 2506783011 Bacteria 5323186
203 2508675790 2508501039 Bacteria 9978592
204 2517763865 2517572101 Bacteria 6884336
205 2528203195 2527291627 Bacteria 5309833
206 2528213042 2527291629 Bacteria 5267418
207 2546949258 2546825537 Bacteria 5389291
208 2555229947 2554235227 Bacteria 3637389
209 2579748038 2576861822 Bacteria 5004595
210 2579852872 2579778521 Bacteria 7624758
211 2619854046 2619618881 Bacteria 7521104
212 2620348978 2619619003 Bacteria 7619552
213 2623500231 2622736605 Bacteria 4992138
214 2626638396 2626541554 Bacteria 7741902
215 2643849972 2643221567 Bacteria 4163945
216 2644135974 2643221624 Bacteria 4384879
217 2644174060 2643221631 Bacteria 8168043
218 2644503802 2643221690 Bacteria 4654705
219 2644527128 2643221694 Bacteria 4392972
220 2644670143 2643221722 Bacteria 4247614
221 2655032651 2654587600 Bacteria 3911798
222 2671832904 2671180195 Bacteria 9757215
223 2686536036 2684623035 Bacteria 8032739
224 2686544918 2684623036 Bacteria 5199090
225 2689962683 2687453737 Bacteria 11203906
226 2689991114 2687453743 Bacteria 8361025
227 2710602031 2710264753 Bacteria 5455564
228 2740169508 2739367898 Bacteria 4367674
229 2774845481 2773857921 Bacteria 9435764
230 2774851060 2773857922 Bacteria 9757215
231 2774863523 2773857924 Bacteria 5256821
232 2774903944 2773857933 Bacteria 5818019
233 2808874182 2808606365 Bacteria 4301966
234 2819739100 2818991472 Bacteria 10089953
235 2884995573 2884994152 Bacteria 4492978
236 2887446472 2887443736 Bacteria 4426037
237 2895887237 2895880812 Bacteria 11255272
238 2939616608 2939615513 Bacteria 2384962
239 3003002167 3002998708 Bacteria 11715108
240 637878713 637000116 Bacteria 5433628
241 8002777709 8002775197 Bacteria 10728764
242 8002790073 8002784119 Bacteria 9788632
243 8053947921 8053945823 Bacteria 8962862
244 8054916467 8054913762 Bacteria 7713009
245 8054921193 8054920844 Bacteria 7068637
246 8055162909 8055157932 Bacteria 6429399
247 Ga0070658_10005895
248 Ga0070658_10019809
249 Ga0070658_10056904
250 Ga0070659_100000127
251 Ga0070709_10000283
252 Ga0070714_100000403
253 Ga0070714_100001584
254 Ga0070713_100003491
255 Ga0070713_100004912
256 Ga0070710_10000160
257 Ga0070708_100002356
258 Ga0070708_100003372
259 Ga0070708_100103353
260 Ga0070681_10009958
261 Ga0070681_10022198
262 Ga0070706_100000867
263 Ga0070706_100004922
264 Ga0070706_100007629
265 Ga0070707_100004689
266 Ga0070707_100012449
267 Ga0070707_100013518
268 Ga0070707_100039900
269 Ga0070698_100003847
270 Ga0070698_100015888
271 Ga0070698_100029303
272 Ga0070679_100103022
273 Ga0068859_100000042
274 Ga0068863_100001046
275 Ga0068858_100000036
276 Ga0068858_100000068
277 Ga0068858_100002449
278 Ga0068862_100000623
279 Ga0081455_10000115
280 Ga0081539_10007844
281 Ga0070717_10002215
282 Ga0070717_10005279
283 Ga0070717_10024113
284 Ga0070716_100001026
285 Ga0070712_100001077
286 Ga0097620_100000042
287 Ga0099794_10004089
288 Ga0105240_10080294
289 Ga0105247_10000041
290 Ga0105247_10002489
291 Ga0114129_10061352
292 Ga0105248_10000153
293 Ga0105248_10000195
294 Ga0105248_10005313
295 Ga0157371_10012474
296 Ga0157369_10006587
297 Ga0157369_10007928
298 Ga0157369_10075701
299 Ga0157372_10029976
300 Ga0163163_10006735
301 Ga0157379_10000014
302 Ga0157379_10002143
303 Ga0213875_10000176
304 Ga0224712_10013648
305 Ga0207710_10000012
306 Ga0207710_10000038
307 Ga0207699_10000332
308 Ga0207705_10051410
309 Ga0207684_10000595
310 Ga0207684_10000615
311 Ga0207684_10000918
312 Ga0207684_10029260
313 Ga0207693_10002177
314 Ga0207663_10038303
315 Ga0207652_10042573
316 Ga0207646_10000913
317 Ga0207646_10019410
318 Ga0207700_10000139
319 Ga0207700_10013666
320 Ga0207664_10000108
321 Ga0207664_10000355
322 Ga0207664_10013206
323 Ga0207664_10016684
324 Ga0207664_10022600
325 Ga0207690_10000653
326 Ga0207665_10000153
327 Ga0207711_10001562
328 Ga0207711_10003062
329 Ga0207703_10000063
330 Ga0207703_10000083
331 Ga0207703_10012805
332 Ga0207702_10047900
333 Ga0207641_10001321
334 Ga0268265_10000066
335 Ga0265337_1006824
336 Ga0265326_10000711
337 Ga0265334_10005386
338 Ga0265338_10000859
339 Ga0265338_10002286
340 Ga0265320_10000238
341 Ga0265320_10006125
342 Ga0316576_10003089
343 Ga0316578_10009986
344 Ga0316578_10035190
345 Ga0307409_100001330
346 Ga0373955_0016664
347 Ga0316574_0000938
348 Ga0373937_0075162
349 Ga0316584_0006914
350 Ga0373925_0000030
351 Ga0373925_0006408
352 Ga0395900_0014692
353 Ga0395898_0016907
354 Ga0395905_0074725
355 Ga0436364_0875353
356 Ga0395901_0005961
357 Ga0395901_0029898
358 Ga0400483_062577
359 Ga0400483_229655
360 Ga0451577_0000141
361 Ga0451577_0168571
362 Ga0453683_0000007
363 Ga0453683_0000580
364 Ga0453684_0000463
365 Ga0453684_0001850
366 Ga0453684_0010286
367 Ga0453684_0041602
368 Ga0453684_0096372
369 Ga0451576_0000155
370 Ga0495592_0056878
371 Ga0495603_0028784
372 Ga0495585_0008272
373 Ga0495594_0000219
374 Ga0495608_0001749
375 Ga0495644_0000041
376 Ga0495648_0046814
377 Ga0495652_0028611
378 Ga0495609_0005607
379 Ga0495667_0000427
380 Ga0495657_0001402
381 Ga0495646_0020154
382 Ga0495600_0003697
383 Ga0495604_0007425
384 Ga0495674_0013036
385 Ga0495680_0000660
386 Ga0495684_0018212
387 Ga0495686_0001533
388 Ga0495602_0015422
389 Ga0496102_0001140
390 Ga0496103_0011640
391 Ga0496109_0062773
392 Ga0496109_0077774
393 Ga0496110_0014376
394 Ga0496110_0042086
395 Ga0496112_0071618
396 Ga0496114_0010648
397 Ga0496115_0003169
398 Ga0496115_0027746
399 Ga0496116_0000150
400 Ga0496117_0000060
401 Ga0496118_0032144
402 Ga0496119_0001709
403 Ga0496119_0002359
404 Ga0496120_0000340
405 Ga0496121_0017690
406 Ga0496121_0021082
407 Ga0496126_0001168
408 Ga0496126_0011235
409 Ga0501031_0068281
410 Ga0501034_0030618
411 Ga0501036_0018271
412 Ga0501038_0038484
413 Ga0501039_0038284
414 Ga0501040_0048845
415 Ga0501041_0010195
416 Ga0501042_0004632
417 Ga0501042_0021780
418 Ga0501047_0095721
419 Ga0501067_0022383
420 Ga0501071_0002901
421 Ga0501071_0019246
422 Ga0501071_0022386
423 Ga0501072_0005965
424 Ga0501074_0015168
425 Ga0501074_0028204
426 Ga0501075_0025082
427 Ga0501076_0024092
428 Ga0501076_0039503
429 Ga0501076_0068366
430 Ga0501077_0015581
431 Ga0501077_0035394
432 Ga0501079_0016887
433 Ga0501080_0019495
434 Ga0501080_0036946
435 Ga0501080_0073315
436 Ga0501081_0008985
437 Ga0501081_0035220
438 Ga0501045_0009780
439 Ga0501045_0015543
440 nmdc:mga05p37_217508_c1
441 nmdc:mga05p37_43789_c1
442 Ga0495595_0013625
443 Ga0500643_000978
444 Ga0501084_0002242
445 Ga0501084_0042276
446 Ga0501082_0006118
447 2676200903
448 2506867096
449 2508675790
450 2517763865
451 2528203195
452 2528213042
453 2546949258
454 2555229947
455 2579748038
456 2579852872
457 2619854046
458 2620348978
459 2623500231
460 2626638396
461 2643849972
462 2644135974
463 2644174060
464 2644503802
465 2644527128
466 2644670143
467 2655032651
468 2671832904
469 2686536036
470 2686544918
471 2689962683
472 2689991114
473 2710602031
474 2740169508
475 2774845481
476 2774851060
477 2774863523
478 2774903944
479 2808874182
480 2819739100
481 2884995573
482 2887446472
483 2895887237
484 2939616608
485 3003002167
486 637878713
487 8002777709
488 8002790073
489 8053947921
490 8054916467
491 8054921193
492 8055162909

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04607

RelA_SpoT

Region found in RelA / SpoT proteins

391

502

0.99

PF02824

TGS

TGS domain

562

621

0.98

PF13328

HD_4

HD domain

184

332

0.98

PF01842

ACT

ACT domain

822

888

0.97

PF13291

ACT_4

ACT domain

816

894

0.97

PF19296

RelA_AH_RIS

RelA/SpoT, AH and RIS domains

635

798

0.81

PF01966

HD

HD domain

203

300

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
3hvz-assembly3.cif.gz_E crystal structure of the tgs domain of the clolep_03100 protein from clostridium leptum, northeast structural genomics consortium target qlr13a 0.9916 415 476
3hvz-assembly3.cif.gz_E crystal structure of the tgs domain of the clolep_03100 protein from clostridium leptum, northeast structural genomics consortium target qlr13a 0.9761 415 476
7oiw-assembly1.cif.gz_A structure of s. aureus rel catalytic domains in complex with pppgpp 0.952 42 372
7oiw-assembly2.cif.gz_B structure of s. aureus rel catalytic domains in complex with pppgpp 0.9415 42 372
7oiw-assembly1.cif.gz_A structure of s. aureus rel catalytic domains in complex with pppgpp 0.935 42 372
ID Description Score Start End Superfamily
af_P0AG24_192_325_3.30.460.10 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.9821 225 358 3.30.460.10
3hvzC00 Alpha Beta;Roll;Ubiquitin-like (UB roll);Beta-grasp domain 0.9804 415 477 3.10.20.30
af_P0AG24_192_325_3.30.460.10 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.9749 225 358 3.30.460.10
af_P0AG20_208_341_3.30.460.10 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.9635 225 358 3.30.460.10
af_P0AG24_2_190_1.10.3210.10 Mainly Alpha;Orthogonal Bundle;Hypothetical protein af1432;Hypothetical protein af1432 0.9595 38 223 1.10.3210.10
ID Description Score Start End GO Terms
AF-A0A535STX3-F1-model_v4 Bifunctional (P)ppGpp synthetase/guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase 0.9841 58 351 GO:0005886
GO:0015969
GO:0016787
AF-A0A661X1T4-F1-model_v4 HD domain-containing protein 0.9822 38 300 GO:0005886
GO:0015969
AF-A0A6L8JM59-F1-model_v4 deleted 0.982 39 328
AF-A0A847WCF3-F1-model_v4 Bifunctional (P)ppGpp synthetase/guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase 0.9814 38 120 GO:0016787
AF-A0A7K0N1T4-F1-model_v4 HD domain-containing protein 0.9785 36 243 GO:0005886

Map