F358728

General Info

Members Datasets Scaffolds Average Seq Length
247 163 241 455

Family's Representative Sequence

Representative Sequence 3300005330|Ga0070690_100000219|Ga0070690_10000021911
Length 469
Sequence VTVPTASLSDLGRIVIVEDDPELLEQLTWALKGKFAVSAARDATHGKALCESDPDLYLFDMRLPPSGQVQEGLDLLKHVRRRDPEATVVMMSGEGERRDALRAVALGAFDFFQKPIDTAELMVILNRALERRRLLSENRELRRTAAEPEPAGGIVGRSAPMQRLLRDLERVAGSDATVLIVGESGTGKELAARAIHARSPRRDRPFVAVNAAALPESLAEAELFGHERGAFTGAVGSRPGRFELAEGGTLFLDEIGTLSAAVQSKLLRVLESREIERLGGRRSIPVDFRLVSATNEDLEARVAAGTFREDLYYRIHTVPIAIPPLRERAGDLPVLAEYFIELFGKRHGKPGLRLSPAALSRLEAHPWRGNVRELQHVIEMLVLFSDAEVIDEADLPRALRRPTPGVSPASGPAASASTSPRGFAAAVEDFERTLLKDAIAAAGGVKAEAARRLGLDANQIKYLCRKYGL

Samples

Sample ID Description Type Environment
1 2690315857 Rheinheimera sp. EpRS3 Isolate Unclassified
2 2738541276 Cellvibrio sp. YR554 Isolate Unclassified
3 2894510363 Methylomonas sp. Kb3 Isolate Unclassified
4 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
5 2989392574 Methylomonas rhizoryzae GJ1 Isolate Unclassified
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
10 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
13 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
14 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
15 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
16 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
17 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
18 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
19 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
20 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
21 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
22 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
23 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
24 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
25 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
26 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
27 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
28 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
29 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
30 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
31 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
32 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
33 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
34 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
35 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
36 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
37 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
38 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
39 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
40 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
41 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
42 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
43 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
44 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
45 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
46 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
47 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
48 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
49 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
50 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
51 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
52 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
53 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
54 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
55 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
56 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
57 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
58 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
59 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
60 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
61 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
62 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
63 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
64 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
65 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
66 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
67 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
68 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
69 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
70 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
71 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
72 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
73 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
74 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
75 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
101 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
105 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
106 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
107 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
108 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
109 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
110 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
111 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
112 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
113 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
114 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
115 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
116 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
117 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
118 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
119 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
120 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
121 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
122 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
123 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
124 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
125 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
126 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
127 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
128 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
129 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
130 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
131 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
132 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
133 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
134 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
135 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
136 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
137 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
138 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
139 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
140 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
141 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
142 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
143 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
144 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
145 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
146 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
147 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
148 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
149 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
150 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
151 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
153 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
154 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
155 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
156 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
157 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
158 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
159 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
160 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
161 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
162 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
163 8001522603 Methylomicrobium sp. RS1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.57
Metatranscriptomes 0
Isolates 2.43

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.4
Nodule 0.81
Rhizoplane 1.62
Rhizosphere 89.47
Stem 0
Stem Tuber 0
Unclassified 7.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10061105 3300003320 Bacteria 3666
2 rootH1_10008777 3300003323 Bacteria 114505
3 Ga0070658_10023570 3300005327 Bacteria 4939
4 Ga0070690_100000219 3300005330 Bacteria 29859
5 Ga0070670_100000015 3300005331 Bacteria 228819
6 Ga0070670_100005542 3300005331 Bacteria 10648
7 Ga0068869_100170371 3300005334 Bacteria 1700
8 Ga0070666_10006635 3300005335 Bacteria 7117
9 Ga0070666_10013990 3300005335 Bacteria 5101
10 Ga0070666_10028476 3300005335 Bacteria 3666
11 Ga0070666_10093362 3300005335 Bacteria 2069
12 Ga0070660_100062495 3300005339 Bacteria 2893
13 Ga0070692_10002043 3300005345 Bacteria 7672
14 Ga0070669_100001929 3300005353 Bacteria 14963
15 Ga0070669_100067550 3300005353 Bacteria 2638
16 Ga0070675_100114701 3300005354 Bacteria 2283
17 Ga0070675_100126751 3300005354 Bacteria 2172
18 Ga0070671_100000013 3300005355 Bacteria 173287
19 Ga0070674_100066878 3300005356 Bacteria 2527
20 Ga0070688_100001685 3300005365 Bacteria 11039
21 Ga0070667_100000015 3300005367 Bacteria 238203
22 Ga0070667_100001693 3300005367 Bacteria 19716
23 Ga0070714_100012841 3300005435 Bacteria 6694
24 Ga0070710_10000897 3300005437 Bacteria 14244
25 Ga0070694_100056492 3300005444 Bacteria 2666
26 Ga0070708_100029848 3300005445 Bacteria 4707
27 Ga0070708_100057854 3300005445 Bacteria 3453
28 Ga0070708_100169718 3300005445 Bacteria 2036
29 Ga0070663_100010904 3300005455 Bacteria 5679
30 Ga0070678_100005896 3300005456 Bacteria 7126
31 Ga0068867_100166125 3300005459 Bacteria 1744
32 Ga0070685_10000116 3300005466 Bacteria 50879
33 Ga0070706_100008995 3300005467 Bacteria 9298
34 Ga0070707_100004019 3300005468 Bacteria 13837
35 Ga0070707_100106330 3300005468 Bacteria 2721
36 Ga0070698_100002318 3300005471 Bacteria 21057
37 Ga0070699_100169566 3300005518 Bacteria 1934
38 Ga0070697_100098513 3300005536 Bacteria 2426
39 Ga0070697_100123306 3300005536 Bacteria 2169
40 Ga0070672_100019437 3300005543 Bacteria 4930
41 Ga0070672_100047577 3300005543 Bacteria 3329
42 Ga0070696_100014149 3300005546 Bacteria 5355
43 Ga0070693_100011731 3300005547 Bacteria 4419
44 Ga0070665_100006002 3300005548 Bacteria 12424
45 Ga0070665_100027715 3300005548 Bacteria 5703
46 Ga0070704_100108449 3300005549 Bacteria 2108
47 Ga0068855_100260084 3300005563 Bacteria 1934
48 Ga0070664_100035179 3300005564 Bacteria 4204
49 Ga0070664_100112942 3300005564 Bacteria 2373
50 Ga0068856_100009736 3300005614 Bacteria 9335
51 Ga0068856_100067819 3300005614 Bacteria 3526
52 Ga0068859_100000339 3300005617 Bacteria 46761
53 Ga0068859_100087470 3300005617 Bacteria 3164
54 Ga0068859_100217889 3300005617 Bacteria 1996
55 Ga0068864_100000056 3300005618 Bacteria 127891
56 Ga0068864_100002617 3300005618 Bacteria 14862
57 Ga0068864_100003305 3300005618 Bacteria 13322
58 Ga0068861_100024896 3300005719 Bacteria 4334
59 Ga0068861_100037206 3300005719 Bacteria 3618
60 Ga0068863_100017388 3300005841 Bacteria 6894
61 Ga0068863_100051748 3300005841 Bacteria 3892
62 Ga0068863_100108571 3300005841 Bacteria 2641
63 Ga0068858_100000221 3300005842 Bacteria 61670
64 Ga0068858_100013383 3300005842 Bacteria 7742
65 Ga0068860_100002288 3300005843 Bacteria 20131
66 Ga0068860_100003304 3300005843 Bacteria 16592
67 Ga0068862_100004456 3300005844 Bacteria 11811
68 Ga0068862_100033084 3300005844 Bacteria 4367
69 Ga0068862_100074503 3300005844 Bacteria 2934
70 Ga0081455_10019589 3300005937 Bacteria 6395
71 Ga0070717_10023634 3300006028 Bacteria 4873
72 Ga0070712_100041194 3300006175 Bacteria 3170
73 Ga0075428_100095767 3300006844 Bacteria 3236
74 Ga0075433_10006334 3300006852 Bacteria 9355
75 Ga0075433_10213568 3300006852 Bacteria 1714
76 Ga0075434_100052893 3300006871 Bacteria 4035
77 Ga0097620_100000339 3300006931 Bacteria 46761
78 Ga0097620_100087469 3300006931 Bacteria 3164
79 Ga0097620_100217895 3300006931 Bacteria 1996
80 Ga0079104_1003797 3300006946 Bacteria 6792
81 Ga0075435_100065134 3300007076 Bacteria 2962
82 Ga0099795_10056884 3300007788 Bacteria 1440
83 Ga0105247_10037276 3300009101 Bacteria 2967
84 Ga0114129_10021217 3300009147 Bacteria 9224
85 Ga0114129_10041587 3300009147 Bacteria 6475
86 Ga0105248_10002759 3300009177 Bacteria 19510
87 Ga0105248_10114383 3300009177 Bacteria 3043
88 Ga0105248_10199220 3300009177 Bacteria 2256
89 Ga0105249_10001106 3300009553 Bacteria 23950
90 Ga0105249_10030593 3300009553 Bacteria 4868
91 Ga0157370_10045543 3300013104 Bacteria 4208
92 Ga0157374_10006434 3300013296 Bacteria 9974
93 Ga0157378_10005211 3300013297 Bacteria 11414
94 Ga0163162_10009267 3300013306 Bacteria 9575
95 Ga0163162_10066193 3300013306 Bacteria 3662
96 Ga0163162_10105921 3300013306 Bacteria 2906
97 Ga0157375_10001574 3300013308 Bacteria 19656
98 Ga0157375_10021472 3300013308 Bacteria 5921
99 Ga0157375_10024227 3300013308 Bacteria 5613
100 Ga0163163_10000158 3300014325 Bacteria 70435
101 Ga0163163_10102495 3300014325 Bacteria 2886
102 Ga0163163_10216834 3300014325 Bacteria 1963
103 Ga0157380_10017544 3300014326 Bacteria 5298
104 Ga0157380_10019843 3300014326 Bacteria 5016
105 Ga0157379_10006246 3300014968 Bacteria 10256
106 Ga0157379_10129804 3300014968 Bacteria 2268
107 Ga0157379_10208632 3300014968 Bacteria 1768
108 Ga0157376_10005114 3300014969 Bacteria 9144
109 Ga0157376_10039456 3300014969 Bacteria 3851
110 Ga0163161_10175741 3300017792 Bacteria 1639
111 Ga0213873_10004651 3300021358 Bacteria 2578
112 Ga0228598_1006528 3300024227 Bacteria 2412
113 Ga0207697_10022432 3300025315 Bacteria 2586
114 Ga0207710_10012515 3300025900 Bacteria 3570
115 Ga0207680_10000910 3300025903 Bacteria 13983
116 Ga0207680_10072460 3300025903 Bacteria 2139
117 Ga0207647_10065939 3300025904 Bacteria 2197
118 Ga0207684_10088628 3300025910 Bacteria 2636
119 Ga0207684_10098211 3300025910 Bacteria 2501
120 Ga0207693_10001207 3300025915 Bacteria 23033
121 Ga0207681_10002419 3300025923 Bacteria 11845
122 Ga0207681_10111716 3300025923 Bacteria 1989
123 Ga0207650_10000013 3300025925 Bacteria 409471
124 Ga0207644_10000106 3300025931 Bacteria 61480
125 Ga0207706_10023527 3300025933 Bacteria 5531
126 Ga0207706_10039779 3300025933 Bacteria 4169
127 Ga0207670_10073803 3300025936 Bacteria 2366
128 Ga0207691_10000738 3300025940 Bacteria 32273
129 Ga0207691_10006042 3300025940 Bacteria 11688
130 Ga0207691_10033109 3300025940 Bacteria 4813
131 Ga0207711_10000200 3300025941 Bacteria 63897
132 Ga0207711_10000303 3300025941 Bacteria 52820
133 Ga0207689_10001800 3300025942 Bacteria 20229
134 Ga0207689_10007399 3300025942 Bacteria 9629
135 Ga0207679_10010856 3300025945 Bacteria 5872
136 Ga0207679_10068544 3300025945 Bacteria 2666
137 Ga0207651_10048340 3300025960 Bacteria 2875
138 Ga0207658_10000005 3300025986 Bacteria 408341
139 Ga0207658_10002940 3300025986 Bacteria 12204
140 Ga0207658_10024954 3300025986 Bacteria 4183
141 Ga0207703_10001581 3300026035 Bacteria 20638
142 Ga0207703_10250353 3300026035 Bacteria 1596
143 Ga0207678_10003285 3300026067 Bacteria 14586
144 Ga0207702_10052249 3300026078 Bacteria 3457
145 Ga0207641_10004500 3300026088 Bacteria 12055
146 Ga0207641_10005135 3300026088 Bacteria 11212
147 Ga0207641_10010622 3300026088 Bacteria 7557
148 Ga0207641_10058510 3300026088 Bacteria 3280
149 Ga0207641_10065408 3300026088 Bacteria 3110
150 Ga0207648_10003629 3300026089 Bacteria 16138
151 Ga0207648_10170385 3300026089 Bacteria 1924
152 Ga0207676_10000010 3300026095 Bacteria 519402
153 Ga0207676_10133524 3300026095 Bacteria 2114
154 Ga0207675_100017353 3300026118 Bacteria 6719
155 Ga0207675_100027900 3300026118 Bacteria 5258
156 Ga0207675_100121724 3300026118 Bacteria 2470
157 Ga0207683_10081850 3300026121 Bacteria 2866
158 Ga0209281_1005614 3300027111 Bacteria 3444
159 Ga0268266_10020643 3300028379 Bacteria 5613
160 Ga0268266_10027015 3300028379 Bacteria 4883
161 Ga0268265_10000486 3300028380 Bacteria 41482
162 Ga0268265_10002839 3300028380 Bacteria 12732
163 Ga0268264_10000036 3300028381 Bacteria 392994
164 Ga0268264_10003953 3300028381 Bacteria 12695
165 Ga0268264_10023876 3300028381 Bacteria 4987
166 Ga0265332_10057859 3300031238 Bacteria 1660
167 Ga0265331_10051523 3300031250 Bacteria 1970
168 Ga0265327_10000238 3300031251 Bacteria 109943
169 Ga0307513_10008770 3300031456 Bacteria 12879
170 Ga0307408_100000051 3300031548 Bacteria 154427
171 Ga0307408_100001234 3300031548 Bacteria 19190
172 Ga0316575_10008705 3300031665 Bacteria 3702
173 Ga0316578_10026205 3300031728 Bacteria 3286
174 Ga0307406_10000701 3300031901 Bacteria 18905
175 Ga0307411_10088641 3300032005 Bacteria 2153
176 Ga0373934_0011908 3300035086 Bacteria 3279
177 Ga0373954_0002844 3300035118 Bacteria 7293
178 Ga0373933_0010676 3300035724 Bacteria 5037
179 Ga0373937_0017299 3300036401 Bacteria 6420
180 Ga0373937_0070195 3300036401 Bacteria 3231
181 Ga0373925_0060593 3300037068 Bacteria 2842
182 Ga0395905_0052504 3300037471 Bacteria 3816
183 Ga0436364_0207337 3300037853 Bacteria 2924
184 Ga0400484_26939 3300038725 Bacteria 43017
185 Ga0400490_47081 3300038726 Bacteria 19193
186 Ga0400491_14579 3300038727 Bacteria 4283
187 Ga0400488_57471 3300038741 Bacteria 3102
188 Ga0400483_042932 3300039062 Bacteria 7088
189 Ga0400483_161317 3300039062 Bacteria 5194
190 Ga0436360_0133508 3300039438 Bacteria 2128
191 Ga0436360_1039492 3300039438 Bacteria 2607
192 Ga0436363_1044580 3300039450 Bacteria 1965
193 Ga0436362_0685955 3300039453 Bacteria 6540
194 Ga0436362_0864881 3300039453 Bacteria 2189
195 Ga0436362_1269477 3300039453 Bacteria 6207
196 Ga0451807_1361628 3300041486 Bacteria 1794
197 Ga0451577_0000995 3300042876 Bacteria 41255
198 Ga0451577_0009952 3300042876 Bacteria 9115
199 Ga0453683_0020413 3300044673 Bacteria 4233
200 Ga0451576_0120578 3300045051 Bacteria 2730
201 Ga0495591_026122 3300046458 Bacteria 1821
202 Ga0495580_0005508 3300046472 Bacteria 10458
203 Ga0495580_0125330 3300046472 Bacteria 1782
204 Ga0495618_0030676 3300046514 Bacteria 3359
205 Ga0495644_0006748 3300046523 Bacteria 4445
206 Ga0495654_0015992 3300046530 Bacteria 3975
207 Ga0495586_0035856 3300046535 Bacteria 2664
208 Ga0495621_0004687 3300046539 Bacteria 3869
209 Ga0495667_0038671 3300046559 Bacteria 3176
210 Ga0495667_0083387 3300046559 Bacteria 2076
211 Ga0495667_0170567 3300046559 Bacteria 1398
212 Ga0495625_0017530 3300046660 Bacteria 5606
213 Ga0495635_0019134 3300046663 Bacteria 4778
214 Ga0495635_0036544 3300046663 Bacteria 3404
215 Ga0495623_0046472 3300046679 Bacteria 2755
216 Ga0495647_0000995 3300046681 Bacteria 8609
217 Ga0495647_0017031 3300046681 Bacteria 2567
218 Ga0495658_0009785 3300046683 Bacteria 4780
219 Ga0495604_0068983 3300047317 Bacteria 2681
220 Ga0496102_0005839 3300048905 Bacteria 10475
221 Ga0496106_0002839 3300048909 Bacteria 12857
222 Ga0496108_0086448 3300048911 Bacteria 2662
223 Ga0496125_0039379 3300048928 Bacteria 4071
224 Ga0496126_0059038 3300048929 Bacteria 3456
225 Ga0501031_0057645 3300049568 Bacteria 2531
226 Ga0501047_0165600 3300049581 Bacteria 2081
227 Ga0501072_0314407 3300049588 Bacteria 1245
228 Ga0501076_0129306 3300049592 Bacteria 2048
229 nmdc:mga05p37_13709_c1 3300050507 Bacteria 9717
230 nmdc:mga05p37_30326_c1 3300050507 Bacteria 6598
231 nmdc:mga0n895_8943_c1 3300050512 Bacteria 8731
232 nmdc:mga0rr50_1824_c1 3300050513 Bacteria 11777
233 nmdc:mga0a205_229059_c1 3300050515 Bacteria 1742
234 Ga0495601_0012754 3300053077 Bacteria 5044
235 Ga0495595_0012938 3300053084 Bacteria 3520
236 Ga0495595_0020802 3300053084 Bacteria 2859
237 Ga0495595_0056344 3300053084 Bacteria 1831
238 Ga0495619_0007816 3300053085 Bacteria 6769
239 Ga0495619_0007857 3300053085 Bacteria 6747
240 Ga0495619_0018101 3300053085 Bacteria 4467
241 Ga0500595_026739 3300053119 Bacteria 1985

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046559 Ga0495667_0170567 Ga0495667_0170567_268_1386 339
2 3300007788 Ga0099795_10056884 Ga0099795_100568841 378
3 3300049588 Ga0501072_0314407 Ga0501072_0314407_30_1235 390
4 3300006852 Ga0075433_10006334 Ga0075433_100063341 421
5 3300006871 Ga0075434_100052893 Ga0075434_1000528932 421
6 3300009147 Ga0114129_10041587 Ga0114129_100415872 421
7 3300050507 nmdc:mga05p37_13709_c1 nmdc:mga05p37_13709_c1_7645_9024 421
8 3300050512 nmdc:mga0n895_8943_c1 nmdc:mga0n895_8943_c1_6881_8260 421
9 3300050513 nmdc:mga0rr50_1824_c1 nmdc:mga0rr50_1824_c1_472_1851 421
10 3300005518 Ga0070699_100169566 Ga0070699_1001695662 424
11 3300036401 Ga0373937_0070195 Ga0373937_0070195_616_1995 425
12 3300046663 Ga0495635_0019134 Ga0495635_0019134_2234_3613 425
13 3300047317 Ga0495604_0068983 Ga0495604_0068983_695_2074 425
14 3300053084 Ga0495595_0012938 Ga0495595_0012938_1234_2613 425
15 3300053085 Ga0495619_0007857 Ga0495619_0007857_1454_2833 425
16 3300013308 Ga0157375_10021472 Ga0157375_100214724 426
17 3300014968 Ga0157379_10208632 Ga0157379_102086321 426
18 3300025940 Ga0207691_10033109 Ga0207691_100331092 426
19 3300014969 Ga0157376_10039456 Ga0157376_100394563 429
20 3300031238 Ga0265332_10057859 Ga0265332_100578591 438
21 3300031250 Ga0265331_10051523 Ga0265331_100515231 438
22 3300038726 Ga0400490_47081 Ga0400490_47081_11178_12503 438
23 iso_pu_bacteria 2690315857 2691330415 443
24 iso_pu_bacteria 2919534386 2919535471 443
25 3300046472 Ga0495580_0125330 Ga0495580_0125330_80_1450 444
26 3300005445 Ga0070708_100169718 Ga0070708_1001697182 445
27 3300005459 Ga0068867_100166125 Ga0068867_1001661251 445
28 3300005467 Ga0070706_100008995 Ga0070706_1000089953 445
29 3300005468 Ga0070707_100106330 Ga0070707_1001063303 445
30 3300007076 Ga0075435_100065134 Ga0075435_1000651342 445
31 3300009147 Ga0114129_10021217 Ga0114129_100212172 445
32 3300025910 Ga0207684_10088628 Ga0207684_100886282 445
33 3300026089 Ga0207648_10170385 Ga0207648_101703852 445
34 3300049592 Ga0501076_0129306 Ga0501076_0129306_586_1962 445
35 3300050507 nmdc:mga05p37_30326_c1 nmdc:mga05p37_30326_c1_4033_5394 445
36 iso_pu_bacteria 2989392574 2989394226 445
37 3300005335 Ga0070666_10093362 Ga0070666_100933622 446
38 3300005445 Ga0070708_100029848 Ga0070708_1000298482 446
39 3300005471 Ga0070698_100002318 Ga0070698_10000231813 446
40 3300005536 Ga0070697_100098513 Ga0070697_1000985132 446
41 3300005536 Ga0070697_100123306 Ga0070697_1001233062 446
42 3300005546 Ga0070696_100014149 Ga0070696_1000141492 446
43 3300025903 Ga0207680_10072460 Ga0207680_100724602 446
44 3300037068 Ga0373925_0060593 Ga0373925_0060593_650_2029 446
45 3300046472 Ga0495580_0005508 Ga0495580_0005508_7009_8388 446
46 3300046514 Ga0495618_0030676 Ga0495618_0030676_202_1554 446
47 3300046535 Ga0495586_0035856 Ga0495586_0035856_280_1659 446
48 3300046559 Ga0495667_0038671 Ga0495667_0038671_1746_3098 446
49 3300046663 Ga0495635_0036544 Ga0495635_0036544_1882_3234 446
50 3300046679 Ga0495623_0046472 Ga0495623_0046472_1247_2623 446
51 3300046681 Ga0495647_0017031 Ga0495647_0017031_307_1686 446
52 3300053077 Ga0495601_0012754 Ga0495601_0012754_2614_3966 446
53 3300053084 Ga0495595_0056344 Ga0495595_0056344_152_1504 446
54 3300053085 Ga0495619_0007816 Ga0495619_0007816_425_1777 446
55 iso_pu_bacteria 2894510363 2894512717 446
56 3300005331 Ga0070670_100005542 Ga0070670_10000554212 447
57 3300005334 Ga0068869_100170371 Ga0068869_1001703711 447
58 3300005335 Ga0070666_10006635 Ga0070666_100066353 447
59 3300005339 Ga0070660_100062495 Ga0070660_1000624953 447
60 3300005345 Ga0070692_10002043 Ga0070692_1000204310 447
61 3300005353 Ga0070669_100067550 Ga0070669_1000675503 447
62 3300005354 Ga0070675_100126751 Ga0070675_1001267512 447
63 3300005356 Ga0070674_100066878 Ga0070674_1000668782 447
64 3300005444 Ga0070694_100056492 Ga0070694_1000564923 447
65 3300005456 Ga0070678_100005896 Ga0070678_1000058968 447
66 3300005543 Ga0070672_100047577 Ga0070672_1000475773 447
67 3300005548 Ga0070665_100027715 Ga0070665_1000277154 447
68 3300005563 Ga0068855_100260084 Ga0068855_1002600842 447
69 3300005614 Ga0068856_100067819 Ga0068856_1000678193 447
70 3300005617 Ga0068859_100087470 Ga0068859_1000874702 447
71 3300005617 Ga0068859_100217889 Ga0068859_1002178891 447
72 3300005618 Ga0068864_100002617 Ga0068864_1000026178 447
73 3300005618 Ga0068864_100003305 Ga0068864_10000330513 447
74 3300005719 Ga0068861_100037206 Ga0068861_1000372062 447
75 3300005841 Ga0068863_100017388 Ga0068863_1000173882 447
76 3300005841 Ga0068863_100108571 Ga0068863_1001085712 447
77 3300005844 Ga0068862_100033084 Ga0068862_1000330842 447
78 3300005844 Ga0068862_100074503 Ga0068862_1000745033 447
79 3300006852 Ga0075433_10213568 Ga0075433_102135681 447
80 3300006931 Ga0097620_100087469 Ga0097620_1000874692 447
81 3300006931 Ga0097620_100217895 Ga0097620_1002178951 447
82 3300009177 Ga0105248_10199220 Ga0105248_101992202 447
83 3300009553 Ga0105249_10001106 Ga0105249_1000110615 447
84 3300013296 Ga0157374_10006434 Ga0157374_100064344 447
85 3300013306 Ga0163162_10009267 Ga0163162_1000926711 447
86 3300013308 Ga0157375_10024227 Ga0157375_100242277 447
87 3300014325 Ga0163163_10102495 Ga0163163_101024953 447
88 3300014325 Ga0163163_10216834 Ga0163163_102168342 447
89 3300014326 Ga0157380_10017544 Ga0157380_100175442 447
90 3300014968 Ga0157379_10129804 Ga0157379_101298042 447
91 3300017792 Ga0163161_10175741 Ga0163161_101757411 447
92 3300025315 Ga0207697_10022432 Ga0207697_100224322 447
93 3300025904 Ga0207647_10065939 Ga0207647_100659392 447
94 3300025910 Ga0207684_10098211 Ga0207684_100982112 447
95 3300025933 Ga0207706_10023527 Ga0207706_100235272 447
96 3300025933 Ga0207706_10039779 Ga0207706_100397795 447
97 3300025940 Ga0207691_10000738 Ga0207691_1000073817 447
98 3300025942 Ga0207689_10001800 Ga0207689_100018004 447
99 3300025986 Ga0207658_10024954 Ga0207658_100249545 447
100 3300026035 Ga0207703_10250353 Ga0207703_102503532 447
101 3300026088 Ga0207641_10010622 Ga0207641_100106223 447
102 3300026088 Ga0207641_10058510 Ga0207641_100585103 447
103 3300026095 Ga0207676_10133524 Ga0207676_101335242 447
104 3300026118 Ga0207675_100027900 Ga0207675_1000279002 447
105 3300026118 Ga0207675_100121724 Ga0207675_1001217242 447
106 3300026121 Ga0207683_10081850 Ga0207683_100818503 447
107 3300028379 Ga0268266_10027015 Ga0268266_100270152 447
108 3300028380 Ga0268265_10002839 Ga0268265_1000283910 447
109 3300028381 Ga0268264_10023876 Ga0268264_100238762 447
110 3300037471 Ga0395905_0052504 Ga0395905_0052504_1696_3054 447
111 3300042876 Ga0451577_0009952 Ga0451577_0009952_5039_6412 447
112 3300050515 nmdc:mga0a205_229059_c1 nmdc:mga0a205_229059_c1_111_1484 447
113 iso_pu_bacteria 8001522603 8001523265 447
114 3300005330 Ga0070690_100000219 Ga0070690_10000021911 448
115 3300005335 Ga0070666_10028476 Ga0070666_100284762 448
116 3300005367 Ga0070667_100001693 Ga0070667_1000016937 448
117 3300005445 Ga0070708_100057854 Ga0070708_1000578544 448
118 3300005455 Ga0070663_100010904 Ga0070663_1000109042 448
119 3300005468 Ga0070707_100004019 Ga0070707_1000040195 448
120 3300005543 Ga0070672_100019437 Ga0070672_1000194374 448
121 3300005547 Ga0070693_100011731 Ga0070693_1000117314 448
122 3300005548 Ga0070665_100006002 Ga0070665_1000060023 448
123 3300005549 Ga0070704_100108449 Ga0070704_1001084492 448
124 3300005564 Ga0070664_100035179 Ga0070664_1000351791 448
125 3300005614 Ga0068856_100009736 Ga0068856_1000097367 448
126 3300005617 Ga0068859_100000339 Ga0068859_10000033913 448
127 3300005841 Ga0068863_100051748 Ga0068863_1000517483 448
128 3300005842 Ga0068858_100000221 Ga0068858_1000002215 448
129 3300005843 Ga0068860_100003304 Ga0068860_1000033045 448
130 3300005937 Ga0081455_10019589 Ga0081455_100195893 448
131 3300006931 Ga0097620_100000339 Ga0097620_10000033913 448
132 3300009177 Ga0105248_10002759 Ga0105248_100027598 448
133 3300013297 Ga0157378_10005211 Ga0157378_1000521110 448
134 3300013308 Ga0157375_10001574 Ga0157375_100015748 448
135 3300014326 Ga0157380_10019843 Ga0157380_100198432 448
136 3300014968 Ga0157379_10006246 Ga0157379_100062464 448
137 3300025903 Ga0207680_10000910 Ga0207680_100009104 448
138 3300025936 Ga0207670_10073803 Ga0207670_100738032 448
139 3300025940 Ga0207691_10006042 Ga0207691_100060424 448
140 3300025941 Ga0207711_10000303 Ga0207711_1000030318 448
141 3300025945 Ga0207679_10010856 Ga0207679_100108562 448
142 3300025960 Ga0207651_10048340 Ga0207651_100483403 448
143 3300025986 Ga0207658_10002940 Ga0207658_100029401 448
144 3300026035 Ga0207703_10001581 Ga0207703_1000158113 448
145 3300026067 Ga0207678_10003285 Ga0207678_100032853 448
146 3300026078 Ga0207702_10052249 Ga0207702_100522494 448
147 3300026088 Ga0207641_10004500 Ga0207641_100045005 448
148 3300026089 Ga0207648_10003629 Ga0207648_1000362912 448
149 3300028381 Ga0268264_10003953 Ga0268264_100039537 448
150 3300031665 Ga0316575_10008705 Ga0316575_100087052 448
151 3300031728 Ga0316578_10026205 Ga0316578_100262052 448
152 3300048905 Ga0496102_0005839 Ga0496102_0005839_4862_6271 448
153 3300048909 Ga0496106_0002839 Ga0496106_0002839_3070_4479 448
154 3300048911 Ga0496108_0086448 Ga0496108_0086448_213_1622 448
155 3300005354 Ga0070675_100114701 Ga0070675_1001147012 449
156 3300005435 Ga0070714_100012841 Ga0070714_1000128415 449
157 3300005437 Ga0070710_10000897 Ga0070710_100008972 449
158 3300005564 Ga0070664_100112942 Ga0070664_1001129422 449
159 3300005719 Ga0068861_100024896 Ga0068861_1000248962 449
160 3300006028 Ga0070717_10023634 Ga0070717_100236342 449
161 3300006175 Ga0070712_100041194 Ga0070712_1000411942 449
162 3300013104 Ga0157370_10045543 Ga0157370_100455432 449
163 3300013306 Ga0163162_10066193 Ga0163162_100661932 449
164 3300014969 Ga0157376_10005114 Ga0157376_100051142 449
165 3300021358 Ga0213873_10004651 Ga0213873_100046512 449
166 3300024227 Ga0228598_1006528 Ga0228598_10065282 449
167 3300025915 Ga0207693_10001207 Ga0207693_100012077 449
168 3300025923 Ga0207681_10111716 Ga0207681_101117162 449
169 3300025942 Ga0207689_10007399 Ga0207689_100073996 449
170 3300025945 Ga0207679_10068544 Ga0207679_100685442 449
171 3300026118 Ga0207675_100017353 Ga0207675_1000173534 449
172 3300031456 Ga0307513_10008770 Ga0307513_100087707 449
173 3300035086 Ga0373934_0011908 Ga0373934_0011908_260_1678 449
174 3300035118 Ga0373954_0002844 Ga0373954_0002844_2787_4205 449
175 3300035724 Ga0373933_0010676 Ga0373933_0010676_2267_3628 449
176 3300036401 Ga0373937_0017299 Ga0373937_0017299_3320_4738 449
177 3300037853 Ga0436364_0207337 Ga0436364_0207337_1317_2678 449
178 3300039062 Ga0400483_042932 Ga0400483_042932_4119_5474 449
179 3300039062 Ga0400483_161317 Ga0400483_161317_1979_3334 449
180 3300039438 Ga0436360_0133508 Ga0436360_0133508_321_1682 449
181 3300039438 Ga0436360_1039492 Ga0436360_1039492_78_1439 449
182 3300039450 Ga0436363_1044580 Ga0436363_1044580_452_1813 449
183 3300039453 Ga0436362_0685955 Ga0436362_0685955_1314_2675 449
184 3300039453 Ga0436362_0864881 Ga0436362_0864881_361_1722 449
185 3300039453 Ga0436362_1269477 Ga0436362_1269477_757_2130 449
186 3300041486 Ga0451807_1361628 Ga0451807_1361628_366_1727 449
187 3300042876 Ga0451577_0000995 Ga0451577_0000995_14992_16371 449
188 3300046559 Ga0495667_0083387 Ga0495667_0083387_19_1437 449
189 3300046660 Ga0495625_0017530 Ga0495625_0017530_555_1916 449
190 3300053084 Ga0495595_0020802 Ga0495595_0020802_1334_2752 449
191 3300053085 Ga0495619_0018101 Ga0495619_0018101_1401_2819 449
192 3300006844 Ga0075428_100095767 Ga0075428_1000957672 450
193 3300038725 Ga0400484_26939 Ga0400484_26939_15708_17069 450
194 3300038727 Ga0400491_14579 Ga0400491_14579_1285_2646 450
195 3300038741 Ga0400488_57471 Ga0400488_57471_831_2192 450
196 3300044673 Ga0453683_0020413 Ga0453683_0020413_1927_3321 450
197 3300005331 Ga0070670_100000015 Ga0070670_10000001585 451
198 3300005335 Ga0070666_10013990 Ga0070666_100139902 451
199 3300005353 Ga0070669_100001929 Ga0070669_1000019296 451
200 3300005355 Ga0070671_100000013 Ga0070671_10000001385 451
201 3300005365 Ga0070688_100001685 Ga0070688_1000016852 451
202 3300005367 Ga0070667_100000015 Ga0070667_100000015130 451
203 3300005466 Ga0070685_10000116 Ga0070685_100001163 451
204 3300005618 Ga0068864_100000056 Ga0068864_10000005628 451
205 3300005842 Ga0068858_100013383 Ga0068858_1000133832 451
206 3300005843 Ga0068860_100002288 Ga0068860_1000022886 451
207 3300005844 Ga0068862_100004456 Ga0068862_1000044566 451
208 3300006946 Ga0079104_1003797 Ga0079104_10037975 451
209 3300009101 Ga0105247_10037276 Ga0105247_100372762 451
210 3300009177 Ga0105248_10114383 Ga0105248_101143832 451
211 3300009553 Ga0105249_10030593 Ga0105249_100305932 451
212 3300013306 Ga0163162_10105921 Ga0163162_101059211 451
213 3300014325 Ga0163163_10000158 Ga0163163_1000015832 451
214 3300025900 Ga0207710_10012515 Ga0207710_100125152 451
215 3300025923 Ga0207681_10002419 Ga0207681_100024193 451
216 3300025925 Ga0207650_10000013 Ga0207650_10000013257 451
217 3300025931 Ga0207644_10000106 Ga0207644_100001063 451
218 3300025941 Ga0207711_10000200 Ga0207711_1000020029 451
219 3300025986 Ga0207658_10000005 Ga0207658_10000005258 451
220 3300026088 Ga0207641_10005135 Ga0207641_100051355 451
221 3300026088 Ga0207641_10065408 Ga0207641_100654082 451
222 3300026095 Ga0207676_10000010 Ga0207676_10000010355 451
223 3300027111 Ga0209281_1005614 Ga0209281_10056142 451
224 3300028379 Ga0268266_10020643 Ga0268266_100206432 451
225 3300028380 Ga0268265_10000486 Ga0268265_1000048630 451
226 3300028381 Ga0268264_10000036 Ga0268264_10000036262 451
227 3300031251 Ga0265327_10000238 Ga0265327_1000023860 451
228 3300048928 Ga0496125_0039379 Ga0496125_0039379_679_2040 451
229 3300048929 Ga0496126_0059038 Ga0496126_0059038_901_2262 451
230 3300053119 Ga0500595_026739 Ga0500595_026739_435_1799 451
231 3300032005 Ga0307411_10088641 Ga0307411_100886412 452
232 3300045051 Ga0451576_0120578 Ga0451576_0120578_1058_2440 452
233 3300049581 Ga0501047_0165600 Ga0501047_0165600_170_1537 452
234 iso_pu_bacteria 2738541276 2738713968 452
235 3300046458 Ga0495591_026122 Ga0495591_026122_105_1514 453
236 3300046523 Ga0495644_0006748 Ga0495644_0006748_723_2132 453
237 3300046530 Ga0495654_0015992 Ga0495654_0015992_2186_3595 453
238 3300046539 Ga0495621_0004687 Ga0495621_0004687_2234_3643 453
239 3300046681 Ga0495647_0000995 Ga0495647_0000995_1527_2936 453
240 3300046683 Ga0495658_0009785 Ga0495658_0009785_2400_3809 453
241 3300049568 Ga0501031_0057645 Ga0501031_0057645_1044_2447 453
242 3300003320 rootH2_10061105 rootH2_100611053 456
243 3300003323 rootH1_10008777 rootH1_1000877736 456
244 3300005327 Ga0070658_10023570 Ga0070658_100235702 456
245 3300031548 Ga0307408_100000051 Ga0307408_1000000513 456
246 3300031548 Ga0307408_100001234 Ga0307408_1000012347 456
247 3300031901 Ga0307406_10000701 Ga0307406_100007014 456

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00158

Sigma54_activat

Sigma-54 interaction domain

154

321

0.99

PF02954

HTH_8

Bacterial regulatory protein, Fis family

426

467

0.92

PF00072

Response_reg

Response regulator receiver domain

14

126

0.91

PF14532

Sigma54_activ_2

Sigma-54 interaction domain

155

325

0.88

PF07728

AAA_5

AAA domain (dynein-related subfamily)

177

304

0.76

PF01078

Mg_chelatase

Magnesium chelatase, subunit ChlI

161

304

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
4bs1-assembly1.cif.gz_A-1 mub is an aaaplus atpase that forms helical filaments to control target selection for dna transposition 0.9535 327 394
6ifh-assembly1.cif.gz_A unphosphorylated spo0f from paenisporosarcina sp. tg-14 0.9466 9 126
4qhs-assembly1.cif.gz_F crystal structure of aaa+sigma 54 activator domain of the flagellar regulatory protein flrc of vibrio cholerae in nucleotide free state 0.9452 150 382
6luf-assembly4.cif.gz_D trans-acting mutant y290a of the central aaa+ domain of the flagellar regulatory protein flrc 0.9422 150 391
5ep2-assembly1.cif.gz_A quorum-sensing signal integrator luxo - catalytic domain in complex with azau inhibitor 0.9411 149 390
ID Description Score Start End Superfamily
af_Q06065_316_382_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9872 321 386 1.10.8.60
5m7nA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9838 150 318 3.40.50.300
1ny5B03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9795 327 392 1.10.8.60
1ny6B02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9731 327 391 1.10.8.60
1ojlE02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9686 321 390 1.10.8.60
ID Description Score Start End GO Terms
AF-A0A850NXH2-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9616 151 340 GO:0003677
GO:0005524
GO:0006355
GO:0016887
GO:0032508
AF-A0A7C5Q6C3-F1-model_v4 Sigma-54 factor interaction domain-containing protein 0.9615 149 321 GO:0005524
GO:0006355
GO:0016887
AF-A0A496Z807-F1-model_v4 Sigma-54-dependent Fis family transcriptional regulator 0.9596 149 322 GO:0005524
GO:0006355
GO:0016887
AF-A0A5C9AV88-F1-model_v4 Sigma-54-dependent transcriptional regulator 0.9588 147 391 GO:0003677
GO:0005524
GO:0006355
GO:0016887
AF-A0A377ZU10-F1-model_v4 Psp operon transcriptional activator 0.9579 149 379 GO:0003677
GO:0005524
GO:0006355
GO:0016887

Feature Viewer

pLDDT pTM Quality
84.24 0.54 Medium
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar

Map