F359630

General Info

Members Datasets Scaffolds Average Seq Length
248 190 236 340

Family's Representative Sequence

Representative Sequence 3300005344|Ga0070661_100000051|Ga0070661_10000005117
Length 378
Sequence VPAFGGIARVPKARGSTRSTEHLVLSRILVTGGAGFVGSNFVLSWLSNADADGVINVDKLTYAGNRKTLASVEGDPRHIFSQTDICDRAALDSLFATYKPRAVLHFAAESHVDRSICAPAQFIQTNIVGTFTLLEAARAYWSELERDAKAAFRFLHVSTDEVFGSLGLGEPPFSEATPYAPNSPYSASKAASDHLVRAYYRTYGLPVLTTNCSNSYGPYHFPEKLIPLMITNALSSKPLPLYGDGQNVRDWLYVEDHCAAIREVLAHGRVGETYNVGGQSEKSNLEVVHTLCDLLDQLKPKKRGSYRDQITFVNDRLGHDRRYAIDTSKVECELGWKPTETFETGLRKTVQWYLDNQAWVRDVMSRGPRGGAAKQYAP

Samples

Sample ID Description Type Environment
1 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
2 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
3 2643221603 Noviherbaspirillum sp. Root189 Isolate Unclassified
4 2744054900 Paraburkholderia ginsengiterrae DCY85-1 Isolate Unclassified
5 2744054901 Paraburkholderia ginsengiterrae DCY85 Isolate Unclassified
6 2808606384 Burkholderia sp. SJZ089 Isolate Rhizosphere
7 2808606390 Burkholderia sp. SJZ115 Isolate Rhizosphere
8 2808606391 Burkholderia sp. SJZ091 Isolate Rhizosphere
9 2842521101 Rhizobium giardinii SEMIA 4084 Isolate Nodule
10 2885266251 Ralstonia sp. SET104 Isolate Nodule
11 2900577576 Ralstonia sp. TCR112 Isolate Rhizosphere
12 2981990288 Burkholderia sp. PvR073 Isolate Rhizosphere
13 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
14 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
15 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
16 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
17 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
18 3300003565 Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_16_lowP_mix3_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
19 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
20 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
21 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
22 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
23 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
24 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
25 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
26 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
27 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
28 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
29 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
30 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
31 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
32 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
33 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
34 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
35 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
36 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
37 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
38 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
39 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
40 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
41 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
42 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
43 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
44 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
45 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
46 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
47 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
48 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
49 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
50 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
51 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
52 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
53 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
54 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
55 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
56 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
57 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
58 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
59 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
60 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
61 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
62 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
63 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
64 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
65 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
66 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
67 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
68 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
69 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
70 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
71 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
72 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
73 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
74 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
75 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
77 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
78 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
79 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
80 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
81 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
83 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
84 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
115 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
117 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
118 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
119 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
120 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
121 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
122 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
123 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
124 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
125 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
126 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
127 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
128 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
129 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
130 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
131 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
132 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
133 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
134 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
135 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
136 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
137 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
138 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
139 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
140 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
141 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
142 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
143 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
144 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
145 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
146 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
147 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
148 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
149 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
150 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
151 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
152 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
153 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
154 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
155 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
156 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
157 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
158 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
159 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
160 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
161 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
162 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
163 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
164 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
165 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
166 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
167 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
168 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
169 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
170 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
171 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
172 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
173 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
174 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
175 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
176 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
177 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
178 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
179 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
180 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
181 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
182 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
183 3300059492 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 14R_AD_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
184 3300059505 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 24R_SD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
185 3300059508 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 53R_CD_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
186 3300059640 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 8R_CD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
187 3300059641 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 9R_AW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
188 3300059643 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 13R_AD_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
189 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
190 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.32
Metatranscriptomes 4.84
Isolates 4.84

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.08
Nodule 1.21
Rhizoplane 8.87
Rhizosphere 74.6
Stem 0
Stem Tuber 0
Unclassified 5.24

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24741J21665_1000061 3300001915 Bacteria 26323
2 JGI24740J21852_10000285 3300001979 Bacteria 21547
3 JGI24740J21852_10000615 3300001979 Bacteria 15414
4 JGI24738J21930_10003566 3300002075 Bacteria 3906
5 JGI25154J39366_1000190 3300002738 Bacteria 45605
6 JGI25406J46586_10020479 3300003203 Bacteria 2674
7 Ga0006560J51390_1025847 3300003565 Bacteria 5598
8 Ga0006562J51391_1030529 3300003578 Bacteria 2013
9 Ga0055526_1000304 3300003771 Bacteria 41058
10 Ga0055526_1001794 3300003771 Bacteria 14879
11 Ga0055526_1003259 3300003771 Bacteria 10429
12 Ga0055536_1000103 3300003781 Bacteria 73706
13 Ga0055534_1000104 3300003784 Bacteria 64767
14 Ga0055534_1000158 3300003784 Bacteria 50846
15 Ga0055534_1000368 3300003784 Bacteria 28258
16 Ga0055534_1002591 3300003784 Bacteria 6176
17 Ga0055541_1001121 3300003841 Bacteria 6032
18 Ga0070683_100374021 3300005329 Bacteria 1357
19 Ga0070690_100269826 3300005330 Bacteria 1210
20 Ga0070682_100019878 3300005337 Bacteria 3945
21 Ga0070660_100067775 3300005339 Bacteria 2781
22 Ga0070661_100000051 3300005344 Bacteria 89625
23 Ga0070661_100069205 3300005344 Bacteria 2595
24 Ga0070692_10030683 3300005345 Bacteria 2689
25 Ga0070675_100064751 3300005354 Bacteria 3022
26 Ga0070673_100080071 3300005364 Bacteria 2646
27 Ga0070688_100010191 3300005365 Bacteria 5174
28 Ga0070659_100000002 3300005366 Bacteria 369239
29 Ga0070659_100003472 3300005366 Bacteria 11218
30 Ga0070714_100000019 3300005435 Bacteria 169455
31 Ga0070710_10000007 3300005437 Bacteria 215320
32 Ga0070663_100000012 3300005455 Bacteria 144773
33 Ga0070663_100231385 3300005455 Bacteria 1455
34 Ga0070663_100353188 3300005455 Bacteria 1191
35 Ga0070662_100028196 3300005457 Bacteria 3905
36 Ga0070706_100145985 3300005467 Bacteria 2209
37 Ga0070679_100144940 3300005530 Bacteria 2353
38 Ga0070679_100359795 3300005530 Bacteria 1403
39 Ga0070684_100019803 3300005535 Bacteria 5572
40 Ga0070672_100015416 3300005543 Bacteria 5440
41 Ga0070693_100094280 3300005547 Bacteria 1811
42 Ga0070664_100000230 3300005564 Bacteria 40002
43 Ga0070664_100052430 3300005564 Bacteria 3455
44 Ga0068857_100280133 3300005577 Bacteria 1534
45 Ga0068856_100000698 3300005614 Bacteria 36400
46 Ga0068852_100109950 3300005616 Bacteria 2504
47 Ga0068864_100065237 3300005618 Bacteria 3159
48 Ga0068861_100028091 3300005719 Bacteria 4104
49 Ga0068858_100349082 3300005842 Bacteria 1417
50 Ga0068860_100072235 3300005843 Bacteria 3279
51 Ga0081455_10055703 3300005937 Bacteria 3362
52 Ga0081538_10004454 3300005981 Bacteria 12906
53 Ga0081538_10056663 3300005981 Bacteria 2293
54 Ga0081539_10002883 3300005985 Bacteria 22801
55 Ga0081539_10004199 3300005985 Bacteria 16266
56 Ga0075365_10006298 3300006038 Bacteria 6515
57 Ga0075365_10058834 3300006038 Bacteria 2559
58 Ga0075363_100075769 3300006048 Bacteria 1833
59 Ga0075364_10035605 3300006051 Bacteria 3217
60 Ga0070712_100000243 3300006175 Bacteria 30680
61 Ga0075428_100135522 3300006844 Bacteria 2678
62 Ga0075428_100198751 3300006844 Bacteria 2168
63 Ga0075428_100287088 3300006844 Bacteria 1770
64 Ga0105240_10034569 3300009093 Bacteria 6518
65 Ga0111539_10023654 3300009094 Bacteria 7549
66 Ga0111539_10068423 3300009094 Bacteria 4192
67 Ga0105245_10021737 3300009098 Bacteria 5632
68 Ga0114129_10015091 3300009147 Bacteria 10995
69 Ga0114129_10100963 3300009147 Bacteria 3992
70 Ga0114129_10185249 3300009147 Bacteria 2830
71 Ga0105239_10042050 3300010375 Bacteria 5007
72 Ga0105239_10164055 3300010375 Bacteria 2484
73 Ga0105246_10002925 3300011119 Bacteria 10333
74 Ga0105246_10050878 3300011119 Bacteria 2843
75 Ga0105246_10134728 3300011119 Bacteria 1850
76 Ga0157371_10000122 3300013102 Bacteria 118586
77 Ga0157371_10101062 3300013102 Bacteria 2046
78 Ga0157370_10000025 3300013104 Bacteria 158865
79 Ga0157369_10129383 3300013105 Bacteria 2676
80 Ga0157372_10000110 3300013307 Bacteria 86374
81 Ga0157375_10141659 3300013308 Bacteria 2532
82 Ga0157375_10341147 3300013308 Bacteria 1664
83 Ga0157380_10015334 3300014326 Bacteria 5631
84 Ga0157377_10004341 3300014745 Bacteria 6511
85 Ga0197907_11193719 3300020069 Bacteria 5662
86 Ga0206355_1145799 3300020076 Bacteria 7619
87 Ga0224712_10012888 3300022467 Bacteria 2647
88 Ga0209566_100200 3300025225 Bacteria 61991
89 Ga0209646_1000075 3300025246 Bacteria 221755
90 Ga0209026_1000902 3300025250 Bacteria 15282
91 Ga0209759_1000869 3300025256 Bacteria 23233
92 Ga0209130_1004663 3300025284 Bacteria 5088
93 Ga0209675_1000070 3300025291 Bacteria 169161
94 Ga0209675_1000078 3300025291 Bacteria 156111
95 Ga0209676_1000121 3300025292 Bacteria 198920
96 Ga0209025_1000051 3300025294 Bacteria 330080
97 Ga0209564_1000084 3300025295 Bacteria 252729
98 Ga0209564_1000133 3300025295 Bacteria 189140
99 Ga0209564_1000380 3300025295 Bacteria 81287
100 Ga0207692_10000001 3300025898 Bacteria 558345
101 Ga0207642_10093717 3300025899 Bacteria 1490
102 Ga0207688_10014266 3300025901 Bacteria 4324
103 Ga0207705_10109266 3300025909 Bacteria 2042
104 Ga0207684_10306336 3300025910 Bacteria 1369
105 Ga0207693_10000549 3300025915 Bacteria 33996
106 Ga0207660_10144311 3300025917 Bacteria 1823
107 Ga0207657_10012394 3300025919 Bacteria 8423
108 Ga0207649_10001726 3300025920 Bacteria 12561
109 Ga0207649_10054516 3300025920 Bacteria 2489
110 Ga0207652_10061570 3300025921 Bacteria 3241
111 Ga0207659_10027383 3300025926 Bacteria 3859
112 Ga0207664_10000008 3300025929 Bacteria 309301
113 Ga0207690_10000084 3300025932 Bacteria 78461
114 Ga0207690_10023149 3300025932 Bacteria 3874
115 Ga0207706_10003933 3300025933 Bacteria 14087
116 Ga0207709_10030890 3300025935 Bacteria 3121
117 Ga0207704_10224498 3300025938 Bacteria 1392
118 Ga0207661_10055041 3300025944 Bacteria 3189
119 Ga0207679_10000001 3300025945 Bacteria 777444
120 Ga0207679_10046021 3300025945 Bacteria 3160
121 Ga0207651_10076641 3300025960 Bacteria 2391
122 Ga0207658_10222042 3300025986 Bacteria 1590
123 Ga0207703_10119892 3300026035 Bacteria 2257
124 Ga0207639_10024849 3300026041 Bacteria 4340
125 Ga0207678_10000004 3300026067 Bacteria 196743
126 Ga0207678_10237062 3300026067 Bacteria 1562
127 Ga0207708_10007690 3300026075 Bacteria 7979
128 Ga0207702_10002607 3300026078 Bacteria 16935
129 Ga0207641_10311958 3300026088 Bacteria 1489
130 Ga0207674_10051019 3300026116 Bacteria 4223
131 Ga0207674_10307182 3300026116 Bacteria 1535
132 Ga0207675_100089336 3300026118 Bacteria 2895
133 Ga0207683_10121139 3300026121 Bacteria 2348
134 Ga0207698_10069781 3300026142 Bacteria 2781
135 Ga0207428_10032000 3300027907 Bacteria 4331
136 Ga0207428_10109648 3300027907 Bacteria 2125
137 Ga0268264_10090749 3300028381 Bacteria 2634
138 Ga0265319_1069276 3300028563 Bacteria 1132
139 Ga0265318_10006646 3300028577 Bacteria 5306
140 Ga0265320_10023684 3300031240 Bacteria 3262
141 Ga0265327_10000326 3300031251 Bacteria 90862
142 Ga0265327_10000858 3300031251 Bacteria 45459
143 Ga0265327_10008577 3300031251 Bacteria 7582
144 Ga0265316_10009754 3300031344 Bacteria 8818
145 Ga0265316_10210265 3300031344 Bacteria 1439
146 Ga0265313_10056092 3300031595 Bacteria 1864
147 Ga0265314_10024181 3300031711 Bacteria 4611
148 Ga0316578_10134219 3300031728 Bacteria 1490
149 Ga0307405_10036893 3300031731 Bacteria 2933
150 Ga0316577_10179919 3300031733 Bacteria 1194
151 Ga0307413_10004431 3300031824 Bacteria 6109
152 Ga0307406_10098171 3300031901 Bacteria 1988
153 Ga0307409_100046543 3300031995 Bacteria 3284
154 Ga0307409_100054585 3300031995 Bacteria 3078
155 Ga0307416_100110526 3300032002 Bacteria 2420
156 Ga0307411_10011614 3300032005 Bacteria 4765
157 Ga0307411_10070524 3300032005 Bacteria 2365
158 Ga0307415_100023289 3300032126 Bacteria 3841
159 Ga0316574_0136131 3300035398 Bacteria 1582
160 Ga0316582_0024213 3300036647 Bacteria 3631
161 Ga0316584_0033543 3300036712 Bacteria 3804
162 Ga0316584_0278743 3300036712 Bacteria 1215
163 Ga0395900_0156316 3300037418 Bacteria 2329
164 Ga0395898_0215508 3300037466 Bacteria 1831
165 Ga0400490_58530 3300038726 Bacteria 12831
166 Ga0436365_0313997 3300039437 Bacteria 6529
167 Ga0436365_0741761 3300039437 Bacteria 4116
168 Ga0436363_1688093 3300039450 Bacteria 4129
169 Ga0466966_0173232 3300044684 Bacteria 1311
170 Ga0466963_0075198 3300044694 Bacteria 2279
171 Ga0466964_0052291 3300044706 Bacteria 1679
172 Ga0466957_0000568 3300044842 Bacteria 18608
173 Ga0466957_0214156 3300044842 Bacteria 1270
174 Ga0466959_0001298 3300045049 Bacteria 15133
175 Ga0466959_0008775 3300045049 Bacteria 7160
176 Ga0466959_0138187 3300045049 Bacteria 1724
177 Ga0466958_0006298 3300045836 Bacteria 6450
178 Ga0466967_0002897 3300045976 Bacteria 10925
179 Ga0466967_0230736 3300045976 Bacteria 1762
180 Ga0495582_0038981 3300046473 Bacteria 2616
181 Ga0495663_0057495 3300046525 Bacteria 1217
182 Ga0495598_0053504 3300046537 Bacteria 1223
183 Ga0495581_0007013 3300047315 Bacteria 6532
184 Ga0496100_0004229 3300048903 Bacteria 7586
185 Ga0496100_0052016 3300048903 Bacteria 2661
186 Ga0496101_0001057 3300048904 Bacteria 16283
187 Ga0496101_0010957 3300048904 Bacteria 6003
188 Ga0496102_0050217 3300048905 Bacteria 3797
189 Ga0496104_0006049 3300048907 Bacteria 10617
190 Ga0496105_0061266 3300048908 Bacteria 3105
191 Ga0496106_0025448 3300048909 Bacteria 4405
192 Ga0496106_0044098 3300048909 Bacteria 3347
193 Ga0496107_0070539 3300048910 Bacteria 2537
194 Ga0496108_0003981 3300048911 Bacteria 11863
195 Ga0496108_0014561 3300048911 Bacteria 6420
196 Ga0496108_0443818 3300048911 Bacteria 1133
197 Ga0496109_0025600 3300048912 Bacteria 5259
198 Ga0496109_0222672 3300048912 Bacteria 1774
199 Ga0496110_0007687 3300048913 Bacteria 8625
200 Ga0496110_0131029 3300048913 Bacteria 2264
201 Ga0496111_0012679 3300048914 Bacteria 5712
202 Ga0496112_0000389 3300048915 Bacteria 28795
203 Ga0496112_0009627 3300048915 Bacteria 8716
204 Ga0496112_0069790 3300048915 Bacteria 3471
205 Ga0496113_0057496 3300048916 Bacteria 2923
206 Ga0496125_0245078 3300048928 Bacteria 1135
207 Ga0501031_0136551 3300049568 Bacteria 1602
208 Ga0501032_0007187 3300049569 Bacteria 8145
209 Ga0501037_0257155 3300049573 Bacteria 1221
210 Ga0501038_0311477 3300049574 Bacteria 1233
211 Ga0501048_0098353 3300049582 Bacteria 2064
212 Ga0501070_0191174 3300049586 Bacteria 1682
213 Ga0501071_0025517 3300049587 Bacteria 4141
214 Ga0501072_0139919 3300049588 Bacteria 1929
215 Ga0501075_0133993 3300049591 Bacteria 1887
216 Ga0501076_0290141 3300049592 Bacteria 1340
217 Ga0501083_0073045 3300049744 Bacteria 2280
218 Ga0501045_0082589 3300049824 Bacteria 2370
219 nmdc:mga03n38_16782_c1 3300050490 Bacteria 2856
220 nmdc:mga00v17_29044_c1 3300050491 Bacteria 3243
221 nmdc:mga0yw44_31720_c1 3300050492 Bacteria 3075
222 nmdc:mga05p37_13407_c1 3300050507 Bacteria 9823
223 nmdc:mga05p37_14073_c1 3300050507 Bacteria 9600
224 nmdc:mga05p37_204712_c1 3300050507 Bacteria 2388
225 nmdc:mga05p37_442857_c1 3300050507 Bacteria 1506
226 nmdc:mga08y16_149375_c1 3300050511 Bacteria 2429
227 nmdc:mga08y16_7389_c1 3300050511 Bacteria 11515
228 Ga0501084_0169146 3300054114 Bacteria 1845
229 Ga0587073_0003660 3300059492 Bacteria 2130
230 Ga0587083_0000648 3300059505 Bacteria 3320
231 Ga0587088_000475 3300059508 Bacteria 3312
232 Ga0587067_000372 3300059640 Bacteria 3767
233 Ga0587068_005460 3300059641 Bacteria 1735
234 Ga0587072_005712 3300059643 Bacteria 1869
235 Ga0587111_0004743 3300060346 Bacteria 2050
236 Ga0501082_0045830 3300060353 Bacteria 3770

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300036647 Ga0316582_0024213 Ga0316582_0024213_28_870 279
2 3300009093 Ga0105240_10034569 Ga0105240_100345698 302
3 3300048911 Ga0496108_0443818 Ga0496108_0443818_125_1117 302
4 3300048912 Ga0496109_0222672 Ga0496109_0222672_506_1498 302
5 3300005435 Ga0070714_100000019 Ga0070714_100000019122 303
6 3300025929 Ga0207664_10000008 Ga0207664_10000008212 303
7 3300010375 Ga0105239_10164055 Ga0105239_101640552 304
8 3300005366 Ga0070659_100000002 Ga0070659_10000000214 305
9 3300025932 Ga0207690_10000084 Ga0207690_1000008431 305
10 3300045836 Ga0466958_0006298 Ga0466958_0006298_5152_6114 305
11 3300045976 Ga0466967_0230736 Ga0466967_0230736_96_1025 305
12 3300005981 Ga0081538_10056663 Ga0081538_100566633 308
13 3300048928 Ga0496125_0245078 Ga0496125_0245078_55_1047 309
14 3300031728 Ga0316578_10134219 Ga0316578_101342192 314
15 3300006175 Ga0070712_100000243 Ga0070712_10000024314 315
16 3300025915 Ga0207693_10000549 Ga0207693_1000054914 315
17 3300054114 Ga0501084_0169146 Ga0501084_0169146_37_1023 315
18 3300005437 Ga0070710_10000007 Ga0070710_10000007217 316
19 3300025898 Ga0207692_10000001 Ga0207692_10000001446 316
20 3300048903 Ga0496100_0052016 Ga0496100_0052016_1562_2554 320
21 3300048904 Ga0496101_0001057 Ga0496101_0001057_7638_8630 320
22 3300049573 Ga0501037_0257155 Ga0501037_0257155_239_1207 321
23 3300003203 JGI25406J46586_10020479 JGI25406J46586_100204792 323
24 3300005985 Ga0081539_10004199 Ga0081539_100041998 323
25 3300027907 Ga0207428_10109648 Ga0207428_101096483 323
26 3300048909 Ga0496106_0025448 Ga0496106_0025448_651_1640 323
27 3300048910 Ga0496107_0070539 Ga0496107_0070539_264_1253 323
28 3300048911 Ga0496108_0014561 Ga0496108_0014561_333_1322 323
29 3300048912 Ga0496109_0025600 Ga0496109_0025600_1637_2626 323
30 3300048913 Ga0496110_0131029 Ga0496110_0131029_1167_2156 323
31 3300048915 Ga0496112_0069790 Ga0496112_0069790_161_1144 323
32 3300048916 Ga0496113_0057496 Ga0496113_0057496_168_1157 323
33 3300049574 Ga0501038_0311477 Ga0501038_0311477_234_1214 323
34 3300050490 nmdc:mga03n38_16782_c1 nmdc:mga03n38_16782_c1_1631_2620 323
35 3300050491 nmdc:mga00v17_29044_c1 nmdc:mga00v17_29044_c1_836_1825 323
36 3300050492 nmdc:mga0yw44_31720_c1 nmdc:mga0yw44_31720_c1_1610_2599 323
37 3300050511 nmdc:mga08y16_149375_c1 nmdc:mga08y16_149375_c1_1044_2027 323
38 3300005455 Ga0070663_100231385 Ga0070663_1002313852 324
39 3300005981 Ga0081538_10004454 Ga0081538_100044549 324
40 3300005985 Ga0081539_10002883 Ga0081539_100028839 324
41 3300006844 Ga0075428_100135522 Ga0075428_1001355222 324
42 3300009094 Ga0111539_10023654 Ga0111539_100236544 324
43 3300011119 Ga0105246_10050878 Ga0105246_100508783 324
44 3300025899 Ga0207642_10093717 Ga0207642_100937172 324
45 3300026116 Ga0207674_10051019 Ga0207674_100510193 324
46 3300026121 Ga0207683_10121139 Ga0207683_101211393 324
47 3300027907 Ga0207428_10032000 Ga0207428_100320004 324
48 3300031995 Ga0307409_100054585 Ga0307409_1000545852 324
49 3300032005 Ga0307411_10070524 Ga0307411_100705243 324
50 3300044684 Ga0466966_0173232 Ga0466966_0173232_273_1259 324
51 3300046473 Ga0495582_0038981 Ga0495582_0038981_47_1033 324
52 3300048903 Ga0496100_0004229 Ga0496100_0004229_3598_4584 324
53 3300048904 Ga0496101_0010957 Ga0496101_0010957_1251_2237 324
54 3300048905 Ga0496102_0050217 Ga0496102_0050217_710_1696 324
55 3300048907 Ga0496104_0006049 Ga0496104_0006049_5172_6158 324
56 3300048908 Ga0496105_0061266 Ga0496105_0061266_1429_2415 324
57 3300048909 Ga0496106_0044098 Ga0496106_0044098_1901_2887 324
58 3300048911 Ga0496108_0003981 Ga0496108_0003981_10749_11735 324
59 3300048913 Ga0496110_0007687 Ga0496110_0007687_829_1815 324
60 3300048914 Ga0496111_0012679 Ga0496111_0012679_4242_5228 324
61 3300048915 Ga0496112_0009627 Ga0496112_0009627_1803_2789 324
62 3300049582 Ga0501048_0098353 Ga0501048_0098353_850_1836 324
63 3300049587 Ga0501071_0025517 Ga0501071_0025517_1086_2072 324
64 3300049588 Ga0501072_0139919 Ga0501072_0139919_62_1048 324
65 3300049591 Ga0501075_0133993 Ga0501075_0133993_524_1510 324
66 3300050507 nmdc:mga05p37_442857_c1 nmdc:mga05p37_442857_c1_34_1020 324
67 3300050511 nmdc:mga08y16_7389_c1 nmdc:mga08y16_7389_c1_2948_3934 324
68 3300060353 Ga0501082_0045830 Ga0501082_0045830_79_1065 324
69 3300011119 Ga0105246_10002925 Ga0105246_100029254 325
70 3300035398 Ga0316574_0136131 Ga0316574_0136131_167_1162 325
71 3300044694 Ga0466963_0075198 Ga0466963_0075198_185_1174 325
72 3300048915 Ga0496112_0000389 Ga0496112_0000389_21570_22571 325
73 3300026088 Ga0207641_10311958 Ga0207641_103119582 326
74 3300039437 Ga0436365_0313997 Ga0436365_0313997_904_1899 326
75 3300039450 Ga0436363_1688093 Ga0436363_1688093_2139_3134 326
76 3300005329 Ga0070683_100374021 Ga0070683_1003740211 327
77 3300005330 Ga0070690_100269826 Ga0070690_1002698262 327
78 3300005337 Ga0070682_100019878 Ga0070682_1000198783 327
79 3300005339 Ga0070660_100067775 Ga0070660_1000677752 327
80 3300005344 Ga0070661_100069205 Ga0070661_1000692052 327
81 3300005345 Ga0070692_10030683 Ga0070692_100306833 327
82 3300005354 Ga0070675_100064751 Ga0070675_1000647513 327
83 3300005364 Ga0070673_100080071 Ga0070673_1000800713 327
84 3300005366 Ga0070659_100003472 Ga0070659_1000034722 327
85 3300005455 Ga0070663_100353188 Ga0070663_1003531881 327
86 3300005457 Ga0070662_100028196 Ga0070662_1000281964 327
87 3300005530 Ga0070679_100144940 Ga0070679_1001449402 327
88 3300005535 Ga0070684_100019803 Ga0070684_1000198033 327
89 3300005543 Ga0070672_100015416 Ga0070672_1000154163 327
90 3300005547 Ga0070693_100094280 Ga0070693_1000942802 327
91 3300005564 Ga0070664_100052430 Ga0070664_1000524303 327
92 3300005616 Ga0068852_100109950 Ga0068852_1001099503 327
93 3300005618 Ga0068864_100065237 Ga0068864_1000652373 327
94 3300005719 Ga0068861_100028091 Ga0068861_1000280912 327
95 3300005842 Ga0068858_100349082 Ga0068858_1003490822 327
96 3300005843 Ga0068860_100072235 Ga0068860_1000722353 327
97 3300006038 Ga0075365_10006298 Ga0075365_100062986 327
98 3300006048 Ga0075363_100075769 Ga0075363_1000757692 327
99 3300006051 Ga0075364_10035605 Ga0075364_100356052 327
100 3300009094 Ga0111539_10068423 Ga0111539_100684233 327
101 3300009098 Ga0105245_10021737 Ga0105245_100217376 327
102 3300010375 Ga0105239_10042050 Ga0105239_100420504 327
103 3300011119 Ga0105246_10134728 Ga0105246_101347282 327
104 3300013102 Ga0157371_10101062 Ga0157371_101010622 327
105 3300013308 Ga0157375_10141659 Ga0157375_101416593 327
106 3300014326 Ga0157380_10015334 Ga0157380_100153342 327
107 3300014745 Ga0157377_10004341 Ga0157377_100043412 327
108 3300025901 Ga0207688_10014266 Ga0207688_100142665 327
109 3300025909 Ga0207705_10109266 Ga0207705_101092662 327
110 3300025917 Ga0207660_10144311 Ga0207660_101443112 327
111 3300025919 Ga0207657_10012394 Ga0207657_100123945 327
112 3300025920 Ga0207649_10054516 Ga0207649_100545162 327
113 3300025921 Ga0207652_10061570 Ga0207652_100615702 327
114 3300025926 Ga0207659_10027383 Ga0207659_100273834 327
115 3300025932 Ga0207690_10023149 Ga0207690_100231492 327
116 3300025933 Ga0207706_10003933 Ga0207706_100039335 327
117 3300025935 Ga0207709_10030890 Ga0207709_100308902 327
118 3300025938 Ga0207704_10224498 Ga0207704_102244982 327
119 3300025944 Ga0207661_10055041 Ga0207661_100550413 327
120 3300025945 Ga0207679_10046021 Ga0207679_100460212 327
121 3300025960 Ga0207651_10076641 Ga0207651_100766412 327
122 3300025986 Ga0207658_10222042 Ga0207658_102220422 327
123 3300026035 Ga0207703_10119892 Ga0207703_101198922 327
124 3300026041 Ga0207639_10024849 Ga0207639_100248494 327
125 3300026067 Ga0207678_10237062 Ga0207678_102370622 327
126 3300026075 Ga0207708_10007690 Ga0207708_100076908 327
127 3300026118 Ga0207675_100089336 Ga0207675_1000893363 327
128 3300026142 Ga0207698_10069781 Ga0207698_100697812 327
129 3300028381 Ga0268264_10090749 Ga0268264_100907492 327
130 3300036712 Ga0316584_0278743 Ga0316584_0278743_142_1146 327
131 3300037418 Ga0395900_0156316 Ga0395900_0156316_158_1153 327
132 3300037466 Ga0395898_0215508 Ga0395898_0215508_325_1320 327
133 3300049586 Ga0501070_0191174 Ga0501070_0191174_395_1396 327
134 3300049744 Ga0501083_0073045 Ga0501083_0073045_143_1144 327
135 3300049824 Ga0501045_0082589 Ga0501045_0082589_900_1904 327
136 3300006038 Ga0075365_10058834 Ga0075365_100588344 328
137 3300013308 Ga0157375_10341147 Ga0157375_103411472 328
138 3300028563 Ga0265319_1069276 Ga0265319_10692761 328
139 3300028577 Ga0265318_10006646 Ga0265318_100066465 328
140 3300031240 Ga0265320_10023684 Ga0265320_100236843 328
141 3300031344 Ga0265316_10210265 Ga0265316_102102651 328
142 3300031595 Ga0265313_10056092 Ga0265313_100560922 328
143 3300031711 Ga0265314_10024181 Ga0265314_100241813 328
144 3300046525 Ga0495663_0057495 Ga0495663_0057495_19_1017 328
145 3300049592 Ga0501076_0290141 Ga0501076_0290141_237_1241 328
146 3300005467 Ga0070706_100145985 Ga0070706_1001459852 334
147 3300025910 Ga0207684_10306336 Ga0207684_103063361 334
148 3300006844 Ga0075428_100287088 Ga0075428_1002870882 336
149 3300009147 Ga0114129_10100963 Ga0114129_101009634 336
150 3300050507 nmdc:mga05p37_204712_c1 nmdc:mga05p37_204712_c1_164_1210 336
151 3300045049 Ga0466959_0008775 Ga0466959_0008775_5005_6072 338
152 3300044706 Ga0466964_0052291 Ga0466964_0052291_599_1663 339
153 3300044842 Ga0466957_0000568 Ga0466957_0000568_626_1690 339
154 3300045049 Ga0466959_0001298 Ga0466959_0001298_10557_11621 339
155 3300045976 Ga0466967_0002897 Ga0466967_0002897_923_1987 339
156 3300009147 Ga0114129_10015091 Ga0114129_100150919 340
157 3300031733 Ga0316577_10179919 Ga0316577_101799191 340
158 3300050507 nmdc:mga05p37_13407_c1 nmdc:mga05p37_13407_c1_2953_3993 340
159 3300044842 Ga0466957_0214156 Ga0466957_0214156_144_1214 341
160 3300046537 Ga0495598_0053504 Ga0495598_0053504_37_1107 342
161 3300047315 Ga0495581_0007013 Ga0495581_0007013_2301_3347 342
162 iso_pu_bacteria 2513237159 2514002332 344
163 iso_pu_bacteria 2582581866 2585395742 344
164 iso_pu_bacteria 2842521101 2842527519 344
165 3300036712 Ga0316584_0033543 Ga0316584_0033543_1818_2867 345
166 3300038726 Ga0400490_58530 Ga0400490_58530_11318_12376 345
167 iso_pu_bacteria 2643221603 2644027397 346
168 iso_pu_bacteria 2744054900 2746092087 346
169 iso_pu_bacteria 2744054901 2746093680 346
170 iso_pu_bacteria 2808606384 2808972198 347
171 iso_pu_bacteria 2808606390 2809006884 347
172 iso_pu_bacteria 2808606391 2809014022 347
173 iso_pu_bacteria 2981990288 2981994173 347
174 3300005530 Ga0070679_100359795 Ga0070679_1003597952 348
175 3300031251 Ga0265327_10000326 Ga0265327_1000032656 348
176 3300031251 Ga0265327_10000858 Ga0265327_1000085827 348
177 3300031344 Ga0265316_10009754 Ga0265316_100097544 348
178 3300049568 Ga0501031_0136551 Ga0501031_0136551_256_1305 348
179 3300049569 Ga0501032_0007187 Ga0501032_0007187_311_1513 348
180 3300005937 Ga0081455_10055703 Ga0081455_100557033 349
181 3300031731 Ga0307405_10036893 Ga0307405_100368933 349
182 3300031824 Ga0307413_10004431 Ga0307413_100044312 349
183 3300031901 Ga0307406_10098171 Ga0307406_100981712 349
184 3300031995 Ga0307409_100046543 Ga0307409_1000465433 349
185 3300032002 Ga0307416_100110526 Ga0307416_1001105262 349
186 3300032005 Ga0307411_10011614 Ga0307411_100116144 349
187 3300032126 Ga0307415_100023289 Ga0307415_1000232894 349
188 iso_pu_bacteria 2900577576 2900581976 349
189 3300002075 JGI24738J21930_10003566 JGI24738J21930_100035664 350
190 3300039437 Ga0436365_0741761 Ga0436365_0741761_789_1862 350
191 iso_pu_bacteria 2885266251 2885270419 350
192 3300003841 Ga0055541_1001121 Ga0055541_10011211 351
193 3300006844 Ga0075428_100198751 Ga0075428_1001987511 351
194 3300009147 Ga0114129_10185249 Ga0114129_101852493 351
195 3300025225 Ga0209566_100200 Ga0209566_10020033 351
196 3300031251 Ga0265327_10008577 Ga0265327_100085773 351
197 3300045049 Ga0466959_0138187 Ga0466959_0138187_571_1632 351
198 3300050507 nmdc:mga05p37_14073_c1 nmdc:mga05p37_14073_c1_447_1541 351
199 3300005365 Ga0070688_100010191 Ga0070688_1000101916 352
200 3300001979 JGI24740J21852_10000615 JGI24740J21852_1000061511 353
201 3300001915 JGI24741J21665_1000061 JGI24741J21665_10000618 354
202 3300001979 JGI24740J21852_10000285 JGI24740J21852_100002854 354
203 3300002738 JGI25154J39366_1000190 JGI25154J39366_100019040 354
204 3300003565 Ga0006560J51390_1025847 Ga0006560J51390_10258471 354
205 3300003578 Ga0006562J51391_1030529 Ga0006562J51391_10305292 354
206 3300003771 Ga0055526_1000304 Ga0055526_10003046 354
207 3300003771 Ga0055526_1001794 Ga0055526_100179413 354
208 3300003771 Ga0055526_1003259 Ga0055526_100325910 354
209 3300003781 Ga0055536_1000103 Ga0055536_100010326 354
210 3300003784 Ga0055534_1000104 Ga0055534_100010471 354
211 3300003784 Ga0055534_1000158 Ga0055534_100015821 354
212 3300003784 Ga0055534_1000368 Ga0055534_100036825 354
213 3300003784 Ga0055534_1002591 Ga0055534_10025913 354
214 3300005344 Ga0070661_100000051 Ga0070661_10000005117 354
215 3300005455 Ga0070663_100000012 Ga0070663_100000012124 354
216 3300005564 Ga0070664_100000230 Ga0070664_10000023017 354
217 3300005577 Ga0068857_100280133 Ga0068857_1002801332 354
218 3300005614 Ga0068856_100000698 Ga0068856_10000069815 354
219 3300013102 Ga0157371_10000122 Ga0157371_1000012276 354
220 3300013104 Ga0157370_10000025 Ga0157370_1000002540 354
221 3300013105 Ga0157369_10129383 Ga0157369_101293832 354
222 3300013307 Ga0157372_10000110 Ga0157372_1000011041 354
223 3300020069 Ga0197907_11193719 Ga0197907_111937196 354
224 3300020076 Ga0206355_1145799 Ga0206355_11457992 354
225 3300022467 Ga0224712_10012888 Ga0224712_100128881 354
226 3300025246 Ga0209646_1000075 Ga0209646_100007553 354
227 3300025250 Ga0209026_1000902 Ga0209026_10009021 354
228 3300025256 Ga0209759_1000869 Ga0209759_10008692 354
229 3300025284 Ga0209130_1004663 Ga0209130_10046634 354
230 3300025291 Ga0209675_1000070 Ga0209675_10000705 354
231 3300025291 Ga0209675_1000078 Ga0209675_100007840 354
232 3300025292 Ga0209676_1000121 Ga0209676_1000121147 354
233 3300025294 Ga0209025_1000051 Ga0209025_100005141 354
234 3300025295 Ga0209564_1000084 Ga0209564_1000084170 354
235 3300025295 Ga0209564_1000133 Ga0209564_1000133139 354
236 3300025295 Ga0209564_1000380 Ga0209564_10003805 354
237 3300025920 Ga0207649_10001726 Ga0207649_1000172611 354
238 3300025945 Ga0207679_10000001 Ga0207679_10000001694 354
239 3300026067 Ga0207678_10000004 Ga0207678_10000004168 354
240 3300026078 Ga0207702_10002607 Ga0207702_1000260715 354
241 3300026116 Ga0207674_10307182 Ga0207674_103071822 354
242 3300059492 Ga0587073_0003660 Ga0587073_0003660_496_1581 354
243 3300059505 Ga0587083_0000648 Ga0587083_0000648_1743_2828 354
244 3300059508 Ga0587088_000475 Ga0587088_000475_1442_2527 354
245 3300059640 Ga0587067_000372 Ga0587067_000372_530_1615 354
246 3300059641 Ga0587068_005460 Ga0587068_005460_562_1647 354
247 3300059643 Ga0587072_005712 Ga0587072_005712_335_1420 354
248 3300060346 Ga0587111_0004743 Ga0587111_0004743_410_1495 354

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

28

277

0.95

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

29

349

0.93

PF07993

NAD_binding_4

Male sterility protein

92

223

0.84

PF04321

RmlD_sub_bind

RmlD substrate binding domain

26

207

0.82

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

28

163

0.8

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

29

277

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
6bi4-assembly2.cif.gz_B 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9627 1 339
6bi4-assembly2.cif.gz_C 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9619 1 339
6bi4-assembly2.cif.gz_B 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9566 1 339
6bi4-assembly2.cif.gz_C 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9558 1 339
1g1a-assembly1.cif.gz_A the crystal structure of dtdp-d-glucose 4,6-dehydratase (rmlb)from salmonella enterica serovar typhimurium 0.9491 3 345
ID Description Score Start End Superfamily
1bxkA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9368 1 319 3.40.50.720
4egbB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.936 2 315 3.40.50.720
1bxkA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9331 1 319 3.40.50.720
4egbB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9316 2 315 3.40.50.720
af_K7VJC9_94_197_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9192 3 63 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A662ZRW6-F1-model_v4 deleted 0.9966 174 331
AF-A0A444QZH8-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9841 156 323
AF-A0A3N5VJY6-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9817 156 331
AF-A0A2M7RYH8-F1-model_v4 dTDP-glucose 4,6-dehydratase 0.9812 187 339
AF-A0A2X1PPC2-F1-model_v4 dTDP-glucose 46-dehydratase (EC 4.2.1.46) 0.9803 184 277 GO:0008460

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pLDDT pTM Quality
91.4 0.91 High
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Predicted Structure (AlphaFold2)

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