F360443

General Info

Members Datasets Scaffolds Average Seq Length
249 138 249 247

Family's Representative Sequence

Representative Sequence 3300005327|Ga0070658_10411189|Ga0070658_104111891
Length 276
Sequence MEPAGGAFDVRIKSARRSFRKAIMNDQAVQPATDVAPGLTQTQRVINTFVAPSKTFADIKAGHKSWWLPFIITALCGGVLWAAINSQVTWKTVYENQQKLQPEFAKRMMDQMPPEQRAAADARGPKTQAITWALSPLGLLIYDLLMALILWPTINFGFGGKATYGSILAVIMYAGLVLWPIRLLLGAVALFAGAAPDGFNIGNPAPTNIAAFLNQADTNKAVYALLSAIDAPTLWCLIITSIGVAIVAGVKRPSGYIAVFGWWFLVTLVLVGIAAI

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
33 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
34 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
42 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
43 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
53 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
54 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
55 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
56 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
57 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
58 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
89 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
90 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
91 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
92 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
93 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
94 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
95 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
96 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
97 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
98 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
99 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
100 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
101 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
102 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
103 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
104 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
105 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
106 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
107 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
108 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
109 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
110 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
111 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
112 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
113 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
114 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
115 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
116 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
117 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
118 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
119 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
120 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
121 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
122 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
123 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
124 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
125 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
126 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
127 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
128 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
129 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
130 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
131 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
134 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
135 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
136 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
137 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
138 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.59
Metatranscriptomes 2.41
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.2
Nodule 0
Rhizoplane 0.4
Rhizosphere 97.99
Stem 0
Stem Tuber 0
Unclassified 0.4

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10008811 3300005327 Bacteria 8109
2 Ga0070658_10034259 3300005327 Bacteria 4086
3 Ga0070658_10411189 3300005327 Bacteria 1163
4 Ga0070683_100132281 3300005329 Bacteria 2361
5 Ga0070683_100692248 3300005329 Bacteria 976
6 Ga0070680_100006913 3300005336 Bacteria 8646
7 Ga0068868_100073077 3300005338 Bacteria 2737
8 Ga0068868_100078570 3300005338 Bacteria 2642
9 Ga0070660_100001386 3300005339 Bacteria 16479
10 Ga0070660_100038942 3300005339 Bacteria 3612
11 Ga0070661_100062111 3300005344 Bacteria 2742
12 Ga0070659_100000075 3300005366 Bacteria 77794
13 Ga0070659_100020963 3300005366 Bacteria 4970
14 Ga0070709_10000485 3300005434 Bacteria 23474
15 Ga0070714_100012422 3300005435 Bacteria 6800
16 Ga0070714_100223299 3300005435 Bacteria 1732
17 Ga0070714_100473879 3300005435 Bacteria 1191
18 Ga0070713_100000163 3300005436 Bacteria 45293
19 Ga0070713_100027970 3300005436 Bacteria 4447
20 Ga0070713_100203077 3300005436 Bacteria 1791
21 Ga0070710_10008470 3300005437 Bacteria 5007
22 Ga0070711_100033259 3300005439 Bacteria 3433
23 Ga0070711_100082715 3300005439 Bacteria 2292
24 Ga0070708_100002494 3300005445 Bacteria 14209
25 Ga0070663_100232644 3300005455 Unclassified 1452
26 Ga0070681_10031441 3300005458 Bacteria 5330
27 Ga0070681_10090509 3300005458 Bacteria 3010
28 Ga0070706_100037706 3300005467 Unclassified 4464
29 Ga0070706_100107053 3300005467 Unclassified 2601
30 Ga0070707_100007632 3300005468 Bacteria 10045
31 Ga0070698_100010165 3300005471 Bacteria 10054
32 Ga0070699_100000177 3300005518 Bacteria 61679
33 Ga0070679_100011956 3300005530 Bacteria 8287
34 Ga0070679_100368264 3300005530 Bacteria 1384
35 Ga0070697_100001730 3300005536 Bacteria 16675
36 Ga0070697_100270684 3300005536 Bacteria 1456
37 Ga0068853_100000115 3300005539 Bacteria 54407
38 Ga0068853_100050730 3300005539 Unclassified 3570
39 Ga0068853_100067803 3300005539 Bacteria 3100
40 Ga0068853_100103777 3300005539 Bacteria 2516
41 Ga0068855_100043575 3300005563 Bacteria 5315
42 Ga0068855_100152692 3300005563 Bacteria 2625
43 Ga0068855_100932969 3300005563 Bacteria 915
44 Ga0068857_100005509 3300005577 Bacteria 10797
45 Ga0068857_100009266 3300005577 Bacteria 8541
46 Ga0068854_100000038 3300005578 Bacteria 95978
47 Ga0068854_100068711 3300005578 Unclassified 2584
48 Ga0068854_100292591 3300005578 Bacteria 1315
49 Ga0068856_100003730 3300005614 Bacteria 15271
50 Ga0068856_100025565 3300005614 Bacteria 5757
51 Ga0068856_100883836 3300005614 Unclassified 912
52 Ga0068852_100028925 3300005616 Bacteria 4543
53 Ga0068852_100289657 3300005616 Unclassified 1581
54 Ga0068866_10020662 3300005718 Unclassified 3020
55 Ga0068863_100047478 3300005841 Bacteria 4072
56 Ga0068860_100397430 3300005843 Bacteria 1363
57 Ga0070717_10013278 3300006028 Bacteria 6305
58 Ga0070717_10022586 3300006028 Unclassified 4973
59 Ga0070717_10023125 3300006028 Unclassified 4920
60 Ga0070717_10234113 3300006028 Unclassified 1618
61 Ga0070717_10258078 3300006028 Bacteria 1541
62 Ga0070717_10260504 3300006028 Bacteria 1534
63 Ga0070717_10326243 3300006028 Unclassified 1368
64 Ga0070716_100015420 3300006173 Unclassified 3925
65 Ga0070712_100001721 3300006175 Bacteria 13392
66 Ga0070712_100006919 3300006175 Bacteria 7067
67 Ga0070712_100213164 3300006175 Bacteria 1524
68 Ga0097621_100108552 3300006237 Unclassified 2343
69 Ga0068871_100002575 3300006358 Bacteria 12387
70 Ga0105240_10009398 3300009093 Bacteria 13844
71 Ga0105240_10020442 3300009093 Bacteria 8831
72 Ga0105240_10139542 3300009093 Bacteria 2899
73 Ga0105240_10156231 3300009093 Bacteria 2712
74 Ga0105240_10217196 3300009093 Bacteria 2230
75 Ga0105240_10452291 3300009093 Unclassified 1437
76 Ga0105245_10001786 3300009098 Bacteria 19580
77 Ga0105245_10038624 3300009098 Bacteria 4247
78 Ga0105241_10149217 3300009174 Bacteria 1911
79 Ga0105241_10401679 3300009174 Bacteria 1202
80 Ga0105242_10048465 3300009176 Unclassified 3453
81 Ga0105248_10000049 3300009177 Bacteria 153741
82 Ga0105248_10058463 3300009177 Bacteria 4330
83 Ga0105248_10088127 3300009177 Bacteria 3493
84 Ga0105248_10202995 3300009177 Unclassified 2233
85 Ga0105237_10025700 3300009545 Bacteria 6020
86 Ga0105237_10051963 3300009545 Bacteria 4116
87 Ga0105238_10021204 3300009551 Bacteria 6622
88 Ga0105238_10029397 3300009551 Bacteria 5598
89 Ga0105238_10056620 3300009551 Bacteria 3933
90 Ga0105239_10155770 3300010375 Unclassified 2551
91 Ga0105239_10323264 3300010375 Bacteria 1740
92 Ga0157371_10178050 3300013102 Unclassified 1520
93 Ga0157371_10373632 3300013102 Bacteria 1040
94 Ga0157370_10005045 3300013104 Bacteria 14914
95 Ga0157370_10020133 3300013104 Bacteria 6669
96 Ga0157370_10278723 3300013104 Unclassified 1545
97 Ga0157369_10006187 3300013105 Bacteria 13888
98 Ga0157369_10018413 3300013105 Bacteria 7831
99 Ga0157369_10061967 3300013105 Bacteria 4031
100 Ga0157369_10379790 3300013105 Unclassified 1466
101 Ga0157374_10003877 3300013296 Bacteria 12559
102 Ga0157374_10039827 3300013296 Bacteria 4326
103 Ga0157374_10169276 3300013296 Bacteria 2130
104 Ga0157378_10000437 3300013297 Bacteria 40470
105 Ga0157378_10219853 3300013297 Bacteria 1805
106 Ga0163162_10027278 3300013306 Bacteria 5646
107 Ga0157372_10013203 3300013307 Bacteria 8813
108 Ga0157372_10022654 3300013307 Bacteria 6799
109 Ga0157372_10022745 3300013307 Bacteria 6786
110 Ga0157372_10024755 3300013307 Bacteria 6522
111 Ga0157372_10623850 3300013307 Unclassified 1256
112 Ga0157372_10655023 3300013307 Bacteria 1223
113 Ga0157375_10108263 3300013308 Unclassified 2873
114 Ga0157375_10135901 3300013308 Bacteria 2582
115 Ga0157379_10025330 3300014968 Bacteria 5270
116 Ga0157379_10535439 3300014968 Unclassified 1088
117 Ga0157376_10172408 3300014969 Bacteria 1971
118 Ga0182007_10106205 3300015262 Unclassified 932
119 Ga0213871_10067497 3300021441 Bacteria 1006
120 Ga0224572_1003890 3300024225 Unclassified 2557
121 Ga0228598_1007298 3300024227 Bacteria 2254
122 Ga0207642_10014947 3300025899 Unclassified 2880
123 Ga0207699_10003015 3300025906 Bacteria 8003
124 Ga0207705_10043773 3300025909 Bacteria 3216
125 Ga0207705_10077427 3300025909 Bacteria 2419
126 Ga0207705_10254874 3300025909 Unclassified 1339
127 Ga0207684_10001546 3300025910 Bacteria 24600
128 Ga0207684_10124437 3300025910 Bacteria 2212
129 Ga0207654_10242831 3300025911 Bacteria 1204
130 Ga0207707_10016684 3300025912 Bacteria 6403
131 Ga0207695_10003985 3300025913 Bacteria 20373
132 Ga0207695_10225971 3300025913 Bacteria 1778
133 Ga0207671_10027528 3300025914 Bacteria 4250
134 Ga0207671_10048802 3300025914 Bacteria 3133
135 Ga0207693_10000257 3300025915 Bacteria 48954
136 Ga0207693_10197627 3300025915 Bacteria 1581
137 Ga0207663_10062989 3300025916 Bacteria 2360
138 Ga0207660_10033763 3300025917 Bacteria 3542
139 Ga0207657_10003277 3300025919 Bacteria 17324
140 Ga0207657_10014331 3300025919 Bacteria 7743
141 Ga0207657_10088648 3300025919 Bacteria 2585
142 Ga0207652_10029065 3300025921 Bacteria 4617
143 Ga0207652_10299236 3300025921 Bacteria 1452
144 Ga0207646_10001897 3300025922 Bacteria 25168
145 Ga0207694_10047117 3300025924 Unclassified 3333
146 Ga0207694_10051169 3300025924 Bacteria 3201
147 Ga0207694_10711106 3300025924 Bacteria 847
148 Ga0207700_10000152 3300025928 Bacteria 41334
149 Ga0207700_10126666 3300025928 Unclassified 2079
150 Ga0207700_10218399 3300025928 Bacteria 1615
151 Ga0207664_10000076 3300025929 Bacteria 102019
152 Ga0207664_10066823 3300025929 Bacteria 2883
153 Ga0207664_10206729 3300025929 Unclassified 1697
154 Ga0207664_10442538 3300025929 Bacteria 1159
155 Ga0207690_10005479 3300025932 Bacteria 7486
156 Ga0207690_10124837 3300025932 Bacteria 1875
157 Ga0207665_10002806 3300025939 Bacteria 11676
158 Ga0207665_10216077 3300025939 Bacteria 1403
159 Ga0207711_10000033 3300025941 Bacteria 193513
160 Ga0207711_10058036 3300025941 Bacteria 3329
161 Ga0207661_10052886 3300025944 Bacteria 3247
162 Ga0207667_10095847 3300025949 Bacteria 3062
163 Ga0207667_10559406 3300025949 Bacteria 1156
164 Ga0207640_10000051 3300025981 Bacteria 95956
165 Ga0207640_10185577 3300025981 Bacteria 1563
166 Ga0207640_10211332 3300025981 Bacteria 1478
167 Ga0207677_10039185 3300026023 Unclassified 3113
168 Ga0207677_10054598 3300026023 Bacteria 2727
169 Ga0207639_10000069 3300026041 Bacteria 96786
170 Ga0207639_10005801 3300026041 Bacteria 8364
171 Ga0207639_10234744 3300026041 Bacteria 1592
172 Ga0207678_10003228 3300026067 Bacteria 14724
173 Ga0207678_10135998 3300026067 Bacteria 2097
174 Ga0207702_10155312 3300026078 Bacteria 2085
175 Ga0207702_10833659 3300026078 Unclassified 912
176 Ga0207674_10000847 3300026116 Bacteria 39909
177 Ga0207674_10007600 3300026116 Bacteria 12628
178 Ga0207698_10152793 3300026142 Bacteria 2006
179 Ga0268264_10454982 3300028381 Unclassified 1241
180 Ga0265338_10003661 3300028800 Bacteria 21405
181 Ga0265338_10024120 3300028800 Bacteria 6225
182 Ga0265338_10053698 3300028800 Bacteria 3601
183 Ga0265338_10155668 3300028800 Bacteria 1770
184 Ga0265338_10160677 3300028800 Unclassified 1735
185 Ga0265762_1006577 3300030760 Unclassified 2077
186 Ga0265762_1007554 3300030760 Bacteria 1939
187 Ga0265762_1008863 3300030760 Bacteria 1791
188 Ga0265770_1007549 3300030878 Unclassified 1533
189 Ga0265760_10035738 3300031090 Bacteria 1472
190 Ga0265760_10041537 3300031090 Unclassified 1371
191 Ga0265325_10006583 3300031241 Bacteria 7037
192 Ga0265325_10031462 3300031241 Bacteria 2839
193 Ga0265325_10039908 3300031241 Unclassified 2468
194 Ga0265339_10028744 3300031249 Bacteria 3159
195 Ga0265327_10150303 3300031251 Unclassified 1082
196 Ga0265316_10050457 3300031344 Bacteria 3272
197 Ga0265316_10090452 3300031344 Bacteria 2335
198 Ga0265313_10039498 3300031595 Bacteria 2340
199 Ga0265313_10063575 3300031595 Bacteria 1720
200 Ga0265314_10069867 3300031711 Bacteria 2355
201 Ga0373934_0032380 3300035086 Unclassified 2050
202 Ga0373923_0280734 3300035111 Unclassified 785
203 Ga0373936_0001392 3300035113 Bacteria 8779
204 Ga0373945_0000758 3300035116 Bacteria 9427
205 Ga0373945_0049558 3300035116 Unclassified 1541
206 Ga0373953_0006455 3300035117 Unclassified 3863
207 Ga0373954_0015616 3300035118 Bacteria 3395
208 Ga0373956_0003153 3300035119 Bacteria 6662
209 Ga0373957_0062654 3300035120 Unclassified 1443
210 Ga0373943_0000342 3300035170 Bacteria 19549
211 Ga0373946_0038349 3300035171 Bacteria 1951
212 Ga0373946_0128332 3300035171 Unclassified 1164
213 Ga0373955_0227730 3300035172 Unclassified 1114
214 Ga0373924_0213699 3300035410 Unclassified 852
215 Ga0373935_0004925 3300035692 Bacteria 7847
216 Ga0373935_0005573 3300035692 Bacteria 7418
217 Ga0373927_0001340 3300035695 Bacteria 18585
218 Ga0373933_0364018 3300035724 Unclassified 940
219 Ga0373947_0000058 3300035725 Bacteria 55174
220 Ga0373947_0123098 3300035725 Bacteria 1649
221 Ga0373947_0262482 3300035725 Unclassified 1145
222 Ga0373925_0237597 3300037068 Unclassified 1458
223 Ga0436360_0750516 3300039438 Bacteria 1274
224 Ga0436360_1081249 3300039438 Bacteria 1636
225 Ga0466961_0186153 3300044693 Bacteria 1288
226 Ga0495651_0126048 3300046462 Unclassified 1875
227 Ga0495650_0000006 3300046471 Bacteria 721347
228 Ga0495580_0129195 3300046472 Bacteria 1753
229 Ga0495664_0010074 3300046477 Bacteria 5303
230 Ga0495630_0043950 3300046517 Bacteria 3339
231 Ga0495630_0308078 3300046517 Unclassified 1210
232 Ga0495630_0403750 3300046517 Bacteria 1047
233 Ga0495586_0277712 3300046535 Unclassified 958
234 Ga0495645_0035077 3300046543 Bacteria 3658
235 Ga0495581_0258725 3300047315 Bacteria 1018
236 Ga0495674_0003273 3300047319 Bacteria 15737
237 Ga0495676_0421941 3300047321 Unclassified 883
238 Ga0495680_0440587 3300047322 Unclassified 893
239 Ga0495686_0004933 3300047472 Bacteria 10744
240 Ga0496115_0620327 3300048918 Unclassified 858
241 Ga0496126_0003359 3300048929 Bacteria 20291
242 Ga0501033_0301454 3300049570 Bacteria 1128
243 Ga0501047_0004467 3300049581 Bacteria 13163
244 Ga0501070_0456266 3300049586 Unclassified 1030
245 Ga0501080_0886913 3300049742 Bacteria 778
246 Ga0501035_0084913 3300049822 Bacteria 2792
247 Ga0500643_012906 3300053087 Bacteria 2976
248 Ga0500644_0031724 3300053088 Unclassified 1683
249 Ga0500595_028739 3300053119 Bacteria 1893

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005339 Ga0070660_100001386 Ga0070660_10000138611 216
2 3300005366 Ga0070659_100000075 Ga0070659_10000007540 216
3 3300005455 Ga0070663_100232644 Ga0070663_1002326441 216
4 3300005539 Ga0068853_100000115 Ga0068853_10000011530 216
5 3300005578 Ga0068854_100000038 Ga0068854_10000003859 216
6 3300009093 Ga0105240_10009398 Ga0105240_100093985 216
7 3300013104 Ga0157370_10020133 Ga0157370_100201331 216
8 3300025913 Ga0207695_10003985 Ga0207695_1000398514 216
9 3300025919 Ga0207657_10003277 Ga0207657_100032775 216
10 3300025932 Ga0207690_10005479 Ga0207690_100054791 216
11 3300025981 Ga0207640_10000051 Ga0207640_1000005138 216
12 3300026041 Ga0207639_10000069 Ga0207639_1000006965 216
13 3300026067 Ga0207678_10135998 Ga0207678_101359982 216
14 3300048929 Ga0496126_0003359 Ga0496126_0003359_2170_2832 217
15 3300009177 Ga0105248_10058463 Ga0105248_100584636 219
16 3300046471 Ga0495650_0000006 Ga0495650_0000006_261201_261944 222
17 3300053087 Ga0500643_012906 Ga0500643_012906_865_1608 222
18 3300013102 Ga0157371_10178050 Ga0157371_101780502 223
19 3300039438 Ga0436360_1081249 Ga0436360_1081249_159_860 223
20 3300049822 Ga0501035_0084913 Ga0501035_0084913_1856_2611 223
21 3300005327 Ga0070658_10034259 Ga0070658_100342593 224
22 3300005336 Ga0070680_100006913 Ga0070680_1000069134 227
23 3300005344 Ga0070661_100062111 Ga0070661_1000621112 227
24 3300005366 Ga0070659_100020963 Ga0070659_1000209633 227
25 3300005458 Ga0070681_10090509 Ga0070681_100905092 227
26 3300005530 Ga0070679_100011956 Ga0070679_1000119566 227
27 3300005539 Ga0068853_100103777 Ga0068853_1001037772 227
28 3300005563 Ga0068855_100043575 Ga0068855_1000435757 227
29 3300005577 Ga0068857_100009266 Ga0068857_10000926610 227
30 3300005578 Ga0068854_100292591 Ga0068854_1002925912 227
31 3300009545 Ga0105237_10051963 Ga0105237_100519634 227
32 3300009551 Ga0105238_10029397 Ga0105238_100293973 227
33 3300013104 Ga0157370_10005045 Ga0157370_1000504516 227
34 3300013105 Ga0157369_10006187 Ga0157369_100061875 227
35 3300013307 Ga0157372_10024755 Ga0157372_100247555 227
36 3300025909 Ga0207705_10043773 Ga0207705_100437732 227
37 3300025914 Ga0207671_10048802 Ga0207671_100488024 227
38 3300025917 Ga0207660_10033763 Ga0207660_100337634 227
39 3300025919 Ga0207657_10014331 Ga0207657_100143315 227
40 3300025921 Ga0207652_10029065 Ga0207652_100290653 227
41 3300025932 Ga0207690_10124837 Ga0207690_101248373 227
42 3300025949 Ga0207667_10559406 Ga0207667_105594062 227
43 3300025981 Ga0207640_10211332 Ga0207640_102113322 227
44 3300026041 Ga0207639_10234744 Ga0207639_102347442 227
45 3300026067 Ga0207678_10003228 Ga0207678_100032285 227
46 3300026116 Ga0207674_10000847 Ga0207674_1000084719 227
47 3300009093 Ga0105240_10139542 Ga0105240_101395423 228
48 3300009093 Ga0105240_10217196 Ga0105240_102171961 228
49 3300025924 Ga0207694_10711106 Ga0207694_107111061 228
50 3300049570 Ga0501033_0301454 Ga0501033_0301454_190_933 228
51 3300049581 Ga0501047_0004467 Ga0501047_0004467_175_918 228
52 3300049586 Ga0501070_0456266 Ga0501070_0456266_69_812 228
53 3300049742 Ga0501080_0886913 Ga0501080_0886913_13_756 228
54 3300044693 Ga0466961_0186153 Ga0466961_0186153_45_836 229
55 3300046472 Ga0495580_0129195 Ga0495580_0129195_282_986 232
56 3300005338 Ga0068868_100078570 Ga0068868_1000785703 234
57 3300013296 Ga0157374_10039827 Ga0157374_100398274 234
58 3300013306 Ga0163162_10027278 Ga0163162_100272783 234
59 3300026023 Ga0207677_10039185 Ga0207677_100391853 234
60 3300035111 Ga0373923_0280734 Ga0373923_0280734_17_727 234
61 3300013105 Ga0157369_10379790 Ga0157369_103797901 235
62 3300035725 Ga0373947_0262482 Ga0373947_0262482_82_849 238
63 3300046517 Ga0495630_0043950 Ga0495630_0043950_713_1480 238
64 3300028800 Ga0265338_10053698 Ga0265338_100536984 239
65 3300035116 Ga0373945_0049558 Ga0373945_0049558_60_833 239
66 3300035171 Ga0373946_0038349 Ga0373946_0038349_676_1449 239
67 3300035692 Ga0373935_0004925 Ga0373935_0004925_4649_5422 239
68 3300035725 Ga0373947_0123098 Ga0373947_0123098_16_789 239
69 3300046517 Ga0495630_0308078 Ga0495630_0308078_355_1128 239
70 3300046543 Ga0495645_0035077 Ga0495645_0035077_2202_2975 239
71 3300047319 Ga0495674_0003273 Ga0495674_0003273_2514_3287 239
72 3300006028 Ga0070717_10023125 Ga0070717_100231255 240
73 3300030760 Ga0265762_1006577 Ga0265762_10065772 240
74 3300030878 Ga0265770_1007549 Ga0265770_10075492 240
75 3300047472 Ga0495686_0004933 Ga0495686_0004933_4961_5698 241
76 3300048918 Ga0496115_0620327 Ga0496115_0620327_10_747 241
77 3300025915 Ga0207693_10197627 Ga0207693_101976272 242
78 3300031090 Ga0265760_10041537 Ga0265760_100415372 242
79 3300025929 Ga0207664_10000076 Ga0207664_1000007673 243
80 3300035086 Ga0373934_0032380 Ga0373934_0032380_889_1653 243
81 3300035113 Ga0373936_0001392 Ga0373936_0001392_3927_4691 243
82 3300035116 Ga0373945_0000758 Ga0373945_0000758_4499_5263 243
83 3300035117 Ga0373953_0006455 Ga0373953_0006455_1442_2206 243
84 3300035118 Ga0373954_0015616 Ga0373954_0015616_2149_2913 243
85 3300035119 Ga0373956_0003153 Ga0373956_0003153_2737_3501 243
86 3300035120 Ga0373957_0062654 Ga0373957_0062654_510_1274 243
87 3300035170 Ga0373943_0000342 Ga0373943_0000342_8338_9102 243
88 3300035171 Ga0373946_0128332 Ga0373946_0128332_348_1112 243
89 3300035172 Ga0373955_0227730 Ga0373955_0227730_176_940 243
90 3300035410 Ga0373924_0213699 Ga0373924_0213699_56_820 243
91 3300035692 Ga0373935_0005573 Ga0373935_0005573_6526_7290 243
92 3300035695 Ga0373927_0001340 Ga0373927_0001340_16552_17316 243
93 3300035724 Ga0373933_0364018 Ga0373933_0364018_113_877 243
94 3300035725 Ga0373947_0000058 Ga0373947_0000058_22152_22916 243
95 3300037068 Ga0373925_0237597 Ga0373925_0237597_223_987 243
96 3300046477 Ga0495664_0010074 Ga0495664_0010074_3594_4358 243
97 3300046517 Ga0495630_0403750 Ga0495630_0403750_155_919 243
98 3300046535 Ga0495586_0277712 Ga0495586_0277712_183_947 243
99 3300047321 Ga0495676_0421941 Ga0495676_0421941_89_853 243
100 3300047322 Ga0495680_0440587 Ga0495680_0440587_63_827 243
101 3300005327 Ga0070658_10411189 Ga0070658_104111891 244
102 3300005329 Ga0070683_100132281 Ga0070683_1001322812 244
103 3300005338 Ga0068868_100073077 Ga0068868_1000730772 244
104 3300005435 Ga0070714_100012422 Ga0070714_1000124222 244
105 3300005539 Ga0068853_100050730 Ga0068853_1000507301 244
106 3300005616 Ga0068852_100289657 Ga0068852_1002896572 244
107 3300006175 Ga0070712_100213164 Ga0070712_1002131642 244
108 3300009093 Ga0105240_10156231 Ga0105240_101562312 244
109 3300009098 Ga0105245_10038624 Ga0105245_100386242 244
110 3300009174 Ga0105241_10149217 Ga0105241_101492172 244
111 3300009545 Ga0105237_10025700 Ga0105237_100257002 244
112 3300009551 Ga0105238_10021204 Ga0105238_100212044 244
113 3300010375 Ga0105239_10155770 Ga0105239_101557702 244
114 3300013296 Ga0157374_10003877 Ga0157374_1000387713 244
115 3300013296 Ga0157374_10169276 Ga0157374_101692762 244
116 3300013297 Ga0157378_10219853 Ga0157378_102198532 244
117 3300013307 Ga0157372_10022745 Ga0157372_100227452 244
118 3300013308 Ga0157375_10135901 Ga0157375_101359012 244
119 3300021441 Ga0213871_10067497 Ga0213871_100674971 244
120 3300025909 Ga0207705_10254874 Ga0207705_102548741 244
121 3300025914 Ga0207671_10027528 Ga0207671_100275282 244
122 3300025924 Ga0207694_10051169 Ga0207694_100511692 244
123 3300025929 Ga0207664_10066823 Ga0207664_100668232 244
124 3300025944 Ga0207661_10052886 Ga0207661_100528862 244
125 3300026023 Ga0207677_10054598 Ga0207677_100545982 244
126 3300026041 Ga0207639_10005801 Ga0207639_100058012 244
127 3300039438 Ga0436360_0750516 Ga0436360_0750516_320_1075 244
128 3300005539 Ga0068853_100067803 Ga0068853_1000678032 245
129 3300005563 Ga0068855_100932969 Ga0068855_1009329691 245
130 3300005577 Ga0068857_100005509 Ga0068857_1000055094 245
131 3300005578 Ga0068854_100068711 Ga0068854_1000687113 245
132 3300005614 Ga0068856_100025565 Ga0068856_1000255653 245
133 3300005616 Ga0068852_100028925 Ga0068852_1000289253 245
134 3300005718 Ga0068866_10020662 Ga0068866_100206622 245
135 3300006237 Ga0097621_100108552 Ga0097621_1001085522 245
136 3300006358 Ga0068871_100002575 Ga0068871_1000025752 245
137 3300009093 Ga0105240_10452291 Ga0105240_104522912 245
138 3300009098 Ga0105245_10001786 Ga0105245_100017864 245
139 3300009174 Ga0105241_10401679 Ga0105241_104016791 245
140 3300009176 Ga0105242_10048465 Ga0105242_100484653 245
141 3300009177 Ga0105248_10202995 Ga0105248_102029952 245
142 3300009551 Ga0105238_10056620 Ga0105238_100566203 245
143 3300010375 Ga0105239_10323264 Ga0105239_103232642 245
144 3300013102 Ga0157371_10373632 Ga0157371_103736321 245
145 3300013105 Ga0157369_10061967 Ga0157369_100619674 245
146 3300013297 Ga0157378_10000437 Ga0157378_100004373 245
147 3300013307 Ga0157372_10655023 Ga0157372_106550232 245
148 3300013308 Ga0157375_10108263 Ga0157375_101082633 245
149 3300014969 Ga0157376_10172408 Ga0157376_101724081 245
150 3300015262 Ga0182007_10106205 Ga0182007_101062052 245
151 3300024225 Ga0224572_1003890 Ga0224572_10038902 245
152 3300024227 Ga0228598_1007298 Ga0228598_10072983 245
153 3300025899 Ga0207642_10014947 Ga0207642_100149473 245
154 3300025911 Ga0207654_10242831 Ga0207654_102428312 245
155 3300025924 Ga0207694_10047117 Ga0207694_100471174 245
156 3300025981 Ga0207640_10185577 Ga0207640_101855772 245
157 3300026078 Ga0207702_10155312 Ga0207702_101553122 245
158 3300026116 Ga0207674_10007600 Ga0207674_100076004 245
159 3300026142 Ga0207698_10152793 Ga0207698_101527932 245
160 3300030760 Ga0265762_1007554 Ga0265762_10075541 245
161 3300031090 Ga0265760_10035738 Ga0265760_100357381 245
162 3300005329 Ga0070683_100692248 Ga0070683_1006922481 246
163 3300005435 Ga0070714_100223299 Ga0070714_1002232992 246
164 3300005458 Ga0070681_10031441 Ga0070681_100314412 246
165 3300005467 Ga0070706_100037706 Ga0070706_1000377066 246
166 3300005841 Ga0068863_100047478 Ga0068863_1000474786 246
167 3300005843 Ga0068860_100397430 Ga0068860_1003974302 246
168 3300006028 Ga0070717_10258078 Ga0070717_102580782 246
169 3300009093 Ga0105240_10020442 Ga0105240_100204427 246
170 3300013307 Ga0157372_10013203 Ga0157372_100132033 246
171 3300014968 Ga0157379_10535439 Ga0157379_105354391 246
172 3300025910 Ga0207684_10124437 Ga0207684_101244371 246
173 3300025912 Ga0207707_10016684 Ga0207707_100166842 246
174 3300025913 Ga0207695_10225971 Ga0207695_102259712 246
175 3300025928 Ga0207700_10126666 Ga0207700_101266662 246
176 3300028381 Ga0268264_10454982 Ga0268264_104549822 246
177 3300028800 Ga0265338_10024120 Ga0265338_100241206 246
178 3300028800 Ga0265338_10160677 Ga0265338_101606772 246
179 3300031241 Ga0265325_10006583 Ga0265325_100065836 246
180 3300031241 Ga0265325_10031462 Ga0265325_100314622 246
181 3300031241 Ga0265325_10039908 Ga0265325_100399082 246
182 3300031251 Ga0265327_10150303 Ga0265327_101503031 246
183 3300031344 Ga0265316_10050457 Ga0265316_100504572 246
184 3300031595 Ga0265313_10039498 Ga0265313_100394982 246
185 3300031595 Ga0265313_10063575 Ga0265313_100635752 246
186 3300005434 Ga0070709_10000485 Ga0070709_100004859 247
187 3300005435 Ga0070714_100473879 Ga0070714_1004738792 247
188 3300005436 Ga0070713_100000163 Ga0070713_1000001636 247
189 3300005436 Ga0070713_100027970 Ga0070713_1000279701 247
190 3300005436 Ga0070713_100203077 Ga0070713_1002030772 247
191 3300005437 Ga0070710_10008470 Ga0070710_100084705 247
192 3300005439 Ga0070711_100033259 Ga0070711_1000332593 247
193 3300005439 Ga0070711_100082715 Ga0070711_1000827152 247
194 3300005445 Ga0070708_100002494 Ga0070708_10000249416 247
195 3300005467 Ga0070706_100107053 Ga0070706_1001070532 247
196 3300005468 Ga0070707_100007632 Ga0070707_1000076324 247
197 3300005471 Ga0070698_100010165 Ga0070698_1000101654 247
198 3300005518 Ga0070699_100000177 Ga0070699_1000001775 247
199 3300005536 Ga0070697_100001730 Ga0070697_1000017304 247
200 3300005614 Ga0068856_100003730 Ga0068856_1000037302 247
201 3300006028 Ga0070717_10013278 Ga0070717_100132782 247
202 3300006028 Ga0070717_10022586 Ga0070717_100225862 247
203 3300006028 Ga0070717_10234113 Ga0070717_102341132 247
204 3300006028 Ga0070717_10260504 Ga0070717_102605042 247
205 3300006028 Ga0070717_10326243 Ga0070717_103262432 247
206 3300006173 Ga0070716_100015420 Ga0070716_1000154202 247
207 3300006175 Ga0070712_100001721 Ga0070712_1000017217 247
208 3300006175 Ga0070712_100006919 Ga0070712_1000069197 247
209 3300013104 Ga0157370_10278723 Ga0157370_102787232 247
210 3300013307 Ga0157372_10623850 Ga0157372_106238502 247
211 3300025906 Ga0207699_10003015 Ga0207699_100030152 247
212 3300025910 Ga0207684_10001546 Ga0207684_1000154617 247
213 3300025915 Ga0207693_10000257 Ga0207693_1000025735 247
214 3300025916 Ga0207663_10062989 Ga0207663_100629893 247
215 3300025921 Ga0207652_10299236 Ga0207652_102992362 247
216 3300025922 Ga0207646_10001897 Ga0207646_1000189718 247
217 3300025928 Ga0207700_10000152 Ga0207700_1000015232 247
218 3300025928 Ga0207700_10218399 Ga0207700_102183991 247
219 3300025929 Ga0207664_10206729 Ga0207664_102067292 247
220 3300025929 Ga0207664_10442538 Ga0207664_104425381 247
221 3300025939 Ga0207665_10002806 Ga0207665_100028062 247
222 3300025939 Ga0207665_10216077 Ga0207665_102160772 247
223 3300028800 Ga0265338_10003661 Ga0265338_1000366115 247
224 3300028800 Ga0265338_10155668 Ga0265338_101556681 247
225 3300030760 Ga0265762_1008863 Ga0265762_10088632 247
226 3300031249 Ga0265339_10028744 Ga0265339_100287442 247
227 3300031344 Ga0265316_10090452 Ga0265316_100904522 247
228 3300031711 Ga0265314_10069867 Ga0265314_100698672 247
229 3300046462 Ga0495651_0126048 Ga0495651_0126048_1058_1825 247
230 3300047315 Ga0495581_0258725 Ga0495581_0258725_56_823 247
231 3300005327 Ga0070658_10008811 Ga0070658_100088114 249
232 3300005339 Ga0070660_100038942 Ga0070660_1000389424 249
233 3300005530 Ga0070679_100368264 Ga0070679_1003682642 249
234 3300005536 Ga0070697_100270684 Ga0070697_1002706843 249
235 3300005563 Ga0068855_100152692 Ga0068855_1001526923 249
236 3300005614 Ga0068856_100883836 Ga0068856_1008838361 249
237 3300009177 Ga0105248_10000049 Ga0105248_1000004982 249
238 3300009177 Ga0105248_10088127 Ga0105248_100881272 249
239 3300013105 Ga0157369_10018413 Ga0157369_100184135 249
240 3300013307 Ga0157372_10022654 Ga0157372_100226546 249
241 3300014968 Ga0157379_10025330 Ga0157379_100253304 249
242 3300025909 Ga0207705_10077427 Ga0207705_100774271 249
243 3300025919 Ga0207657_10088648 Ga0207657_100886483 249
244 3300025941 Ga0207711_10000033 Ga0207711_10000033119 249
245 3300025941 Ga0207711_10058036 Ga0207711_100580362 249
246 3300025949 Ga0207667_10095847 Ga0207667_100958473 249
247 3300026078 Ga0207702_10833659 Ga0207702_108336591 249
248 3300053088 Ga0500644_0031724 Ga0500644_0031724_462_1223 249
249 3300053119 Ga0500595_028739 Ga0500595_028739_141_902 249

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04893

Yip1

Yip1 domain

46

274

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
7xgf-assembly2.cif.gz_D crystal structure of bcl-xl in complex with computationally designed inhibitor protein 0.2963 49 233
3mvc-assembly1.cif.gz_A high resolution crystal structure of the heme domain of glb-6 from c. elegans 0.2946 41 247
7xgf-assembly2.cif.gz_D crystal structure of bcl-xl in complex with computationally designed inhibitor protein 0.283 49 233
8ipq-assembly2.cif.gz_C cryo-em structure of heme transporter cyddc from mycobacterium smegmatis in the inward facing apo state 0.2824 14 171
8btk-assembly1.cif.gz_TC structure of the trap complex with the sec translocon and a translating ribosome 0.2796 16 159
ID Description Score Start End Superfamily
af_P9WJU1_755_964_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.3775 3 248 1.20.1640.10
af_A0A5K1K993_190_457_1.20.1560.10 Mainly Alpha;Up-down Bundle;ABC transporter transmembrane region fold;ABC transporter type 1, transmembrane domain 0.3645 18 165 1.20.1560.10
af_P9WJU1_755_964_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.3452 3 248 1.20.1640.10
af_Q0JFK0_71_393_1.20.1560.10 Mainly Alpha;Up-down Bundle;ABC transporter transmembrane region fold;ABC transporter type 1, transmembrane domain 0.3274 17 162 1.20.1560.10
af_P32386_333_684_1.20.1560.10 Mainly Alpha;Up-down Bundle;ABC transporter transmembrane region fold;ABC transporter type 1, transmembrane domain 0.3088 3 165 1.20.1560.10
ID Description Score Start End GO Terms
AF-A0A4Q0T753-F1-model_v4 Yip1 domain-containing protein 0.9785 15 247 GO:0016020
AF-I3ZC06-F1-model_v4 Yip1 domain protein 0.9639 8 249 GO:0016020
AF-A0A4V6NEV3-F1-model_v4 Yip1-like protein 0.9548 1 248 GO:0016020
AF-Q1IHB9-F1-model_v4 Yip1 domain-containing protein 0.9459 1 249 GO:0016020
AF-A0A3P0X704-F1-model_v4 Yip1 domain-containing protein 0.9454 15 249 GO:0016020

Feature Viewer

pLDDT pTM Quality
90.28 0.86 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar

Map