F363355

General Info

Members Datasets Scaffolds Average Seq Length
252 198 237 339

Family's Representative Sequence

Representative Sequence 3300032004|Ga0307414_10027969|Ga0307414_100279694
Length 415
Sequence MDRTAHQVAQGGVDQPVTSQRQFALECLGHDGCLEMHAIVAEYPHFGSWQPGFYQFTDGFGVQRAFPNKMNGHSNPPPGNPMPELLPQQENATDAGLAASGRRVVEIEARALDALALRINGAFSSACRLVLASKGRVVATGMGKSGHIARKIAATLASTGTPSFYVHPGEAGHGDLGMITDADVVLALSYSGESDEVLTLLPVLKRQGNAVIAMTGRPQSTLARESDVHLDVSVPAEACPLDLAPTSSTTATLAMGDALAVALLEARGFTADDFARSHPAGSLGRRLLLHITDVMHAGDEVPRVREDATLSEALVEMSRKRLGMTAVVDARDKLIGLFTDGDLRRTLDDAALDVRTAMIAEVMTRQPRTIAADQLAVEAARLMETHKISGLVVVDETGRAVGALNIHDLLRARVV

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2524614729 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
3 2627854209 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
4 2643221559 Lysobacter sp. Root559 Isolate Unclassified
5 2643221573 Lysobacter sp. Root604 Isolate Unclassified
6 2643221586 Lysobacter sp. Root667 Isolate Unclassified
7 2643221593 Lysobacter sp. Root690 Isolate Unclassified
8 2643221612 Lysobacter sp. Root76 Isolate Unclassified
9 2643221695 Lysobacter sp. Root494 Isolate Unclassified
10 2643221720 Lysobacter sp. Root916 Isolate Unclassified
11 2643221727 Lysobacter sp. Root96 Isolate Unclassified
12 2643221728 Lysobacter sp. Root983 Isolate Unclassified
13 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
14 2941489479 Lysobacter enzymogenes 2943 Isolate Rhizosphere
15 2995948881 Lysobacter enzymogenes B25 Isolate Unclassified
16 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
17 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
18 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
19 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
20 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
21 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
22 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
23 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
24 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
25 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
26 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
27 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
28 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
29 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
30 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
31 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
32 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
33 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
34 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
35 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
36 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
37 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
38 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
39 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
40 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
41 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
42 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
43 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
44 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
45 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
46 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
47 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
48 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
49 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
50 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
51 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
52 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
53 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
54 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
55 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
56 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
57 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
58 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
59 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
60 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
61 3300009978 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_199 metaG Metagenome Rhizosphere
62 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
63 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
64 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
65 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
66 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
67 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
68 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
69 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
70 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
71 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
72 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
73 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
74 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
75 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
76 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
77 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
78 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
79 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
80 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
81 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
82 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
83 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
84 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
85 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
86 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
87 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
113 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
114 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
115 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
116 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
119 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
120 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
121 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
122 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
123 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
124 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
125 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
126 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
127 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
128 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
129 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
130 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
131 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
132 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
133 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
134 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
135 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
136 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
137 3300042001 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z081617_5542 Metagenome Rhizosphere
138 3300042003 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821FE14Z081617_5551 Metagenome Rhizosphere
139 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
140 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
141 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
142 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
143 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
144 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
145 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
146 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
147 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
148 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
149 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
150 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
151 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
152 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
153 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
154 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
155 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
156 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
157 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
158 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
159 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
160 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
161 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
162 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
163 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
164 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
165 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
166 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
167 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
168 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
169 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
170 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
171 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
172 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
173 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
174 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
175 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
176 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
177 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
178 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
179 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
180 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
181 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
182 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
183 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
184 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
185 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
186 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
187 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
188 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
189 3300049672 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_A_3_drought Metagenome Rhizosphere
190 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
191 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
192 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
193 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
194 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
195 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
196 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
197 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
198 8003014200 Lysobacter changpingensis Cm-3-T8 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.65
Metatranscriptomes 0.4
Isolates 5.95

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.1
Nodule 0
Rhizoplane 0.79
Rhizosphere 68.65
Stem 0
Stem Tuber 0
Unclassified 17.46

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_772469 2162886007 Bacteria 3584
2 JGI25152J39213_1000164 3300002773 Bacteria 45374
3 JGI25150J39212_1000593 3300002774 Bacteria 14205
4 JGI25151J46595_10000351 3300003187 Bacteria 49103
5 JGI25153J46596_10000219 3300003215 Bacteria 49103
6 Ga0055526_1000214 3300003771 Bacteria 50037
7 Ga0055526_1000428 3300003771 Bacteria 33858
8 Ga0055537_1000017 3300003773 Bacteria 123856
9 Ga0055537_1000267 3300003773 Bacteria 38049
10 Ga0055524_1000280 3300003775 Bacteria 50037
11 Ga0055524_1006439 3300003775 Bacteria 5089
12 Ga0055534_1000163 3300003784 Bacteria 50001
13 Ga0055534_1000267 3300003784 Bacteria 36162
14 Ga0055528_1000182 3300003790 Bacteria 53454
15 Ga0055528_1000204 3300003790 Bacteria 50037
16 Ga0055530_10003440 3300003791 Bacteria 8998
17 Ga0065714_10017036 3300005288 Bacteria 2802
18 Ga0065704_10070357 3300005289 Bacteria 30374
19 Ga0065715_10012939 3300005293 Bacteria 2898
20 Ga0065715_10108207 3300005293 Bacteria 2731
21 Ga0070676_10048365 3300005328 Bacteria 2486
22 Ga0070683_100116817 3300005329 Bacteria 2519
23 Ga0070670_100005162 3300005331 Bacteria 10991
24 Ga0070660_100000587 3300005339 Bacteria 24403
25 Ga0070661_100001353 3300005344 Bacteria 17141
26 Ga0070669_100024506 3300005353 Bacteria 4326
27 Ga0070669_100157365 3300005353 Bacteria 1763
28 Ga0070671_100015900 3300005355 Bacteria 6079
29 Ga0070673_100107294 3300005364 Bacteria 2310
30 Ga0070663_100002342 3300005455 Bacteria 10642
31 Ga0070662_100006931 3300005457 Bacteria 7337
32 Ga0068867_100105084 3300005459 Bacteria 2162
33 Ga0068853_100005105 3300005539 Bacteria 10253
34 Ga0070672_100016367 3300005543 Bacteria 5309
35 Ga0070672_100059428 3300005543 Bacteria 3007
36 Ga0068855_100001654 3300005563 Bacteria 27904
37 Ga0070664_100002697 3300005564 Bacteria 14323
38 Ga0070664_100012242 3300005564 Bacteria 6972
39 Ga0068854_100088482 3300005578 Bacteria 2300
40 Ga0068856_100000827 3300005614 Bacteria 33391
41 Ga0068859_100133658 3300005617 Bacteria 2553
42 Ga0068861_100023469 3300005719 Bacteria 4449
43 Ga0068870_10012789 3300005840 Bacteria 3929
44 Ga0068870_10023667 3300005840 Bacteria 3032
45 Ga0075364_10015794 3300006051 Bacteria 4686
46 Ga0075428_100102090 3300006844 Bacteria 3127
47 Ga0075431_100115294 3300006847 Bacteria 2773
48 Ga0097620_100133652 3300006931 Bacteria 2553
49 Ga0105251_10000013 3300009011 Bacteria 163226
50 Ga0105251_10004486 3300009011 Bacteria 9472
51 Ga0105244_10065948 3300009036 Bacteria 1813
52 Ga0105250_10000008 3300009092 Bacteria 343965
53 Ga0111539_10050978 3300009094 Bacteria 4930
54 Ga0105243_10002714 3300009148 Bacteria 14720
55 Ga0105241_10004900 3300009174 Bacteria 9874
56 Ga0105237_10036803 3300009545 Bacteria 4951
57 Ga0105238_10009300 3300009551 Bacteria 9839
58 Ga0105148_100548 3300009978 Bacteria 3211
59 Ga0105028_103485 3300009993 Bacteria 1643
60 Ga0105239_10005342 3300010375 Bacteria 15072
61 Ga0105239_10301794 3300010375 Bacteria 1803
62 Ga0105246_10144798 3300011119 Bacteria 1791
63 Ga0157373_10006999 3300013100 Bacteria 8404
64 Ga0157371_10136225 3300013102 Bacteria 1749
65 Ga0157369_10000001 3300013105 Bacteria 554908
66 Ga0157369_10022061 3300013105 Bacteria 7115
67 Ga0163162_10378006 3300013306 Bacteria 1550
68 Ga0157372_10000521 3300013307 Bacteria 42456
69 Ga0157375_10169554 3300013308 Bacteria 2330
70 Ga0157380_10280275 3300014326 Bacteria 1525
71 Ga0157379_10000026 3300014968 Bacteria 88552
72 Ga0182006_1006557 3300015261 Bacteria 5397
73 Ga0182005_1006319 3300015265 Bacteria 3636
74 Ga0163161_10006239 3300017792 Bacteria 8257
75 Ga0163161_10015056 3300017792 Bacteria 5391
76 Ga0207425_1000111 3300025245 Bacteria 77375
77 Ga0209129_1000087 3300025258 Bacteria 179582
78 Ga0209565_1000005 3300025263 Bacteria 947317
79 Ga0209565_1000031 3300025263 Bacteria 320341
80 Ga0209673_1000011 3300025273 Bacteria 586604
81 Ga0209673_1000164 3300025273 Bacteria 138082
82 Ga0209675_1000004 3300025291 Bacteria 947166
83 Ga0209675_1000015 3300025291 Bacteria 403517
84 Ga0209025_1000013 3300025294 Bacteria 871757
85 Ga0209025_1000023 3300025294 Bacteria 541307
86 Ga0209564_1000018 3300025295 Bacteria 586913
87 Ga0209564_1000037 3300025295 Bacteria 414794
88 Ga0209758_1000014 3300025297 Bacteria 871757
89 Ga0209050_1000417 3300025298 Bacteria 78631
90 Ga0209256_1000021 3300025299 Bacteria 537097
91 Ga0209257_1000623 3300025304 Bacteria 57092
92 Ga0209257_1012102 3300025304 Bacteria 4045
93 Ga0207696_1000119 3300025711 Bacteria 147213
94 Ga0207713_1000262 3300025735 Bacteria 64928
95 Ga0207713_1018967 3300025735 Bacteria 3385
96 Ga0207682_10007752 3300025893 Bacteria 4265
97 Ga0207645_10000197 3300025907 Bacteria 49246
98 Ga0207643_10046464 3300025908 Bacteria 2454
99 Ga0207671_10004681 3300025914 Bacteria 12946
100 Ga0207657_10000387 3300025919 Bacteria 46408
101 Ga0207649_10002210 3300025920 Bacteria 10997
102 Ga0207652_10196574 3300025921 Bacteria 1814
103 Ga0207681_10039147 3300025923 Bacteria 3145
104 Ga0207694_10003766 3300025924 Bacteria 12018
105 Ga0207650_10013107 3300025925 Bacteria 5735
106 Ga0207690_10000921 3300025932 Bacteria 18788
107 Ga0207706_10000158 3300025933 Bacteria 75298
108 Ga0207706_10000427 3300025933 Bacteria 45237
109 Ga0207709_10001341 3300025935 Bacteria 17363
110 Ga0207709_10026349 3300025935 Bacteria 3339
111 Ga0207669_10071557 3300025937 Bacteria 2179
112 Ga0207704_10027906 3300025938 Bacteria 3123
113 Ga0207691_10010547 3300025940 Bacteria 8865
114 Ga0207679_10001446 3300025945 Bacteria 14935
115 Ga0207679_10007460 3300025945 Bacteria 6940
116 Ga0207679_10083164 3300025945 Bacteria 2453
117 Ga0207667_10002884 3300025949 Bacteria 21346
118 Ga0207640_10056127 3300025981 Bacteria 2583
119 Ga0207678_10001676 3300026067 Bacteria 20327
120 Ga0207702_10009177 3300026078 Bacteria 8317
121 Ga0207648_10000165 3300026089 Bacteria 68239
122 Ga0207648_10239178 3300026089 Bacteria 1616
123 Ga0207675_100001050 3300026118 Bacteria 27372
124 Ga0209371_1000011 3300027312 Bacteria 848456
125 Ga0209999_1007368 3300027543 Bacteria 1981
126 Ga0209983_1002435 3300027665 Bacteria 4074
127 Ga0209974_10000131 3300027876 Bacteria 22213
128 Ga0209974_10017264 3300027876 Bacteria 2394
129 Ga0268266_10018901 3300028379 Bacteria 5870
130 Ga0268265_10020042 3300028380 Bacteria 4661
131 Ga0268256_1000011 3300030500 Bacteria 848625
132 Ga0265328_10034219 3300031239 Bacteria 1881
133 Ga0265320_10093574 3300031240 Bacteria 1390
134 Ga0265316_10294583 3300031344 Bacteria 1183
135 Ga0307513_10000456 3300031456 Bacteria 58897
136 Ga0307513_10091953 3300031456 Bacteria 3090
137 Ga0307408_100167126 3300031548 Bacteria 1753
138 Ga0307410_10018883 3300031852 Bacteria 4178
139 Ga0307410_10033054 3300031852 Bacteria 3337
140 Ga0307406_10004938 3300031901 Bacteria 7268
141 Ga0307412_10006162 3300031911 Bacteria 6758
142 Ga0307412_10091219 3300031911 Bacteria 2132
143 Ga0307414_10002500 3300032004 Bacteria 9642
144 Ga0307414_10007779 3300032004 Bacteria 6041
145 Ga0307414_10027969 3300032004 Bacteria 3650
146 Ga0307414_10316545 3300032004 Bacteria 1326
147 Ga0307415_100002740 3300032126 Bacteria 8807
148 Ga0316574_0095602 3300035398 Bacteria 1899
149 Ga0316584_0020905 3300036712 Bacteria 4753
150 Ga0237819_00040 3300038705 Bacteria 45528
151 Ga0400487_29895 3300039110 Bacteria 2854
152 Ga0439436_0016318 3300041404 Bacteria 2228
153 Ga0439447_003988 3300041407 Bacteria 5165
154 Ga0439465_0004469 3300041413 Bacteria 4523
155 Ga0451843_1024113 3300041509 Bacteria 3043
156 Ga0439441_005537 3300042001 Bacteria 1969
157 Ga0439443_001939 3300042003 Bacteria 2397
158 Ga0439432_008932 3300042006 Bacteria 3502
159 Ga0439449_0000004 3300042007 Bacteria 82454
160 Ga0439456_004448 3300042013 Bacteria 2833
161 Ga0439462_0010763 3300042015 Bacteria 2321
162 Ga0450899_005617 3300042135 Bacteria 1349
163 Ga0450908_006908 3300042184 Bacteria 2148
164 Ga0439434_0006846 3300042435 Bacteria 3330
165 Ga0439444_0003923 3300042437 Bacteria 2128
166 Ga0451577_0004991 3300042876 Bacteria 13752
167 Ga0453684_0186354 3300044712 Bacteria 2432
168 Ga0451576_0105237 3300045051 Bacteria 2935
169 Ga0495603_0129389 3300046455 Bacteria 1471
170 Ga0495638_0000881 3300046460 Bacteria 30946
171 Ga0495638_0079411 3300046460 Bacteria 1995
172 Ga0495643_0003922 3300046522 Bacteria 10656
173 Ga0495663_0001521 3300046525 Bacteria 7294
174 Ga0495586_0019307 3300046535 Bacteria 3626
175 Ga0495633_0025129 3300046558 Bacteria 2935
176 Ga0495656_0008788 3300046615 Bacteria 3619
177 Ga0495668_0002791 3300046616 Bacteria 13910
178 Ga0495636_0006123 3300047318 Bacteria 4725
179 Ga0495672_0000090 3300047320 Bacteria 148367
180 Ga0495686_0088642 3300047472 Bacteria 1880
181 Ga0496102_0010174 3300048905 Bacteria 8088
182 Ga0496106_0003315 3300048909 Bacteria 12000
183 Ga0496117_0000617 3300048920 Bacteria 57555
184 Ga0496117_0001304 3300048920 Bacteria 36712
185 Ga0496118_0000737 3300048921 Bacteria 52822
186 Ga0496118_0009570 3300048921 Bacteria 9757
187 Ga0496118_0017699 3300048921 Bacteria 6470
188 Ga0496119_0000329 3300048922 Bacteria 66425
189 Ga0496119_0006232 3300048922 Bacteria 11141
190 Ga0496120_0000147 3300048923 Bacteria 117881
191 Ga0496120_0000514 3300048923 Bacteria 60279
192 Ga0496121_0002594 3300048924 Bacteria 27284
193 Ga0496121_0013642 3300048924 Bacteria 8711
194 Ga0496122_0000566 3300048925 Bacteria 75845
195 Ga0496122_0001044 3300048925 Bacteria 48545
196 Ga0496122_0040760 3300048925 Bacteria 3683
197 Ga0496123_0000150 3300048926 Bacteria 142879
198 Ga0496123_0000324 3300048926 Bacteria 91012
199 Ga0496124_0000032 3300048927 Bacteria 332524
200 Ga0496124_0000680 3300048927 Bacteria 55821
201 Ga0496124_0012173 3300048927 Bacteria 8515
202 Ga0496124_0023155 3300048927 Bacteria 5677
203 Ga0496124_0025020 3300048927 Bacteria 5413
204 Ga0496124_0030972 3300048927 Bacteria 4739
205 Ga0496124_0080084 3300048927 Bacteria 2688
206 Ga0496124_0109457 3300048927 Bacteria 2226
207 Ga0496125_0006598 3300048928 Bacteria 12493
208 Ga0496125_0091668 3300048928 Bacteria 2275
209 Ga0496125_0128146 3300048928 Bacteria 1793
210 Ga0496126_0000967 3300048929 Bacteria 49289
211 Ga0501306_007845 3300049127 Bacteria 1287
212 Ga0501032_0015375 3300049569 Bacteria 5402
213 Ga0501033_0015569 3300049570 Bacteria 5766
214 Ga0501037_0024657 3300049573 Bacteria 4447
215 Ga0501037_0246476 3300049573 Bacteria 1251
216 Ga0501038_0021003 3300049574 Bacteria 5866
217 Ga0501039_0219483 3300049575 Bacteria 1495
218 Ga0501043_0123271 3300049579 Bacteria 2032
219 Ga0501046_0021192 3300049580 Bacteria 5367
220 Ga0501047_0065732 3300049581 Bacteria 3496
221 Ga0501068_0110879 3300049584 Bacteria 1706
222 Ga0501070_0253434 3300049586 Bacteria 1439
223 Ga0501071_0016059 3300049587 Bacteria 5145
224 Ga0501073_0073119 3300049589 Bacteria 2387
225 Ga0501075_0245303 3300049591 Bacteria 1365
226 Ga0501076_0047327 3300049592 Bacteria 3400
227 Ga0501077_0133874 3300049593 Bacteria 1572
228 Ga0501239_003838 3300049672 Bacteria 1449
229 Ga0501081_0062440 3300049743 Bacteria 2584
230 Ga0501266_005815 3300049763 Bacteria 1532
231 Ga0501035_0053239 3300049822 Bacteria 3620
232 Ga0501045_0036801 3300049824 Bacteria 3555
233 Ga0501045_0275555 3300049824 Bacteria 1252
234 nmdc:mga0qj67_105217_c1 3300050509 Bacteria 2277
235 nmdc:mga06r32_122800_c1 3300050510 Bacteria 2563
236 nmdc:mga08y16_18642_c1 3300050511 Bacteria 7310
237 Ga0501082_0259042 3300060353 Bacteria 1513

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046455 Ga0495603_0129389 Ga0495603_0129389_130_1128 324
2 3300039110 Ga0400487_29895 Ga0400487_29895_1660_2658 327
3 3300049575 Ga0501039_0219483 Ga0501039_0219483_398_1420 327
4 3300049587 Ga0501071_0016059 Ga0501071_0016059_3445_4467 327
5 3300049591 Ga0501075_0245303 Ga0501075_0245303_159_1181 327
6 3300049592 Ga0501076_0047327 Ga0501076_0047327_796_1818 327
7 3300049824 Ga0501045_0036801 Ga0501045_0036801_1911_2933 327
8 3300060353 Ga0501082_0259042 Ga0501082_0259042_349_1371 327
9 3300005840 Ga0068870_10023667 Ga0068870_100236673 328
10 3300006931 Ga0097620_100133652 Ga0097620_1001336522 328
11 3300014326 Ga0157380_10280275 Ga0157380_102802751 328
12 3300044712 Ga0453684_0186354 Ga0453684_0186354_985_1998 328
13 3300046535 Ga0495586_0019307 Ga0495586_0019307_1125_2129 328
14 3300049581 Ga0501047_0065732 Ga0501047_0065732_1958_2962 328
15 3300031852 Ga0307410_10018883 Ga0307410_100188832 329
16 3300031911 Ga0307412_10006162 Ga0307412_100061626 329
17 3300032004 Ga0307414_10316545 Ga0307414_103165452 329
18 3300032126 Ga0307415_100002740 Ga0307415_1000027406 329
19 3300042001 Ga0439441_005537 Ga0439441_005537_455_1474 329
20 3300042003 Ga0439443_001939 Ga0439443_001939_366_1385 329
21 3300042013 Ga0439456_004448 Ga0439456_004448_1732_2751 329
22 3300042135 Ga0450899_005617 Ga0450899_005617_209_1228 329
23 3300042184 Ga0450908_006908 Ga0450908_006908_371_1390 329
24 3300042435 Ga0439434_0006846 Ga0439434_0006846_2243_3262 329
25 3300042437 Ga0439444_0003923 Ga0439444_0003923_1013_2032 329
26 3300042876 Ga0451577_0004991 Ga0451577_0004991_2308_3324 329
27 3300049824 Ga0501045_0275555 Ga0501045_0275555_73_1092 329
28 iso_pu_bacteria 2842757796 2842759234 329
29 iso_pu_bacteria 2941489479 2941494304 329
30 iso_pu_bacteria 2995948881 2995952936 329
31 3300005543 Ga0070672_100059428 Ga0070672_1000594282 330
32 3300009092 Ga0105250_10000008 Ga0105250_10000008216 330
33 3300009978 Ga0105148_100548 Ga0105148_1005483 330
34 3300014968 Ga0157379_10000026 Ga0157379_1000002635 330
35 3300025711 Ga0207696_1000119 Ga0207696_100011942 330
36 3300031239 Ga0265328_10034219 Ga0265328_100342192 330
37 3300031240 Ga0265320_10093574 Ga0265320_100935742 330
38 3300031344 Ga0265316_10294583 Ga0265316_102945831 330
39 3300031852 Ga0307410_10033054 Ga0307410_100330542 330
40 3300042006 Ga0439432_008932 Ga0439432_008932_1345_2355 330
41 3300042015 Ga0439462_0010763 Ga0439462_0010763_811_1821 330
42 3300048927 Ga0496124_0000032 Ga0496124_0000032_101947_102954 330
43 3300049127 Ga0501306_007845 Ga0501306_007845_251_1261 330
44 3300049672 Ga0501239_003838 Ga0501239_003838_65_1075 330
45 3300049763 Ga0501266_005815 Ga0501266_005815_478_1488 330
46 iso_pu_bacteria 2524614729 2525557288 330
47 iso_pu_bacteria 2627854209 2630648884 330
48 iso_pu_bacteria 2643221695 2644529719 330
49 3300003771 Ga0055526_1000214 Ga0055526_100021423 331
50 3300003773 Ga0055537_1000267 Ga0055537_100026729 331
51 3300003775 Ga0055524_1000280 Ga0055524_100028023 331
52 3300003784 Ga0055534_1000163 Ga0055534_100016324 331
53 3300003790 Ga0055528_1000204 Ga0055528_100020423 331
54 3300005719 Ga0068861_100023469 Ga0068861_1000234695 331
55 3300005840 Ga0068870_10012789 Ga0068870_100127895 331
56 3300006844 Ga0075428_100102090 Ga0075428_1001020903 331
57 3300006847 Ga0075431_100115294 Ga0075431_1001152943 331
58 3300009094 Ga0111539_10050978 Ga0111539_100509785 331
59 3300025263 Ga0209565_1000005 Ga0209565_1000005838 331
60 3300025273 Ga0209673_1000011 Ga0209673_1000011493 331
61 3300025291 Ga0209675_1000004 Ga0209675_1000004838 331
62 3300025295 Ga0209564_1000018 Ga0209564_1000018493 331
63 3300025299 Ga0209256_1000021 Ga0209256_1000021441 331
64 3300025893 Ga0207682_10007752 Ga0207682_100077525 331
65 3300025907 Ga0207645_10000197 Ga0207645_1000019733 331
66 3300025908 Ga0207643_10046464 Ga0207643_100464642 331
67 3300025923 Ga0207681_10039147 Ga0207681_100391474 331
68 3300025933 Ga0207706_10000427 Ga0207706_1000042710 331
69 3300025937 Ga0207669_10071557 Ga0207669_100715572 331
70 3300025938 Ga0207704_10027906 Ga0207704_100279062 331
71 3300026089 Ga0207648_10000165 Ga0207648_1000016534 331
72 3300026118 Ga0207675_100001050 Ga0207675_10000105022 331
73 3300027543 Ga0209999_1007368 Ga0209999_10073682 331
74 3300027665 Ga0209983_1002435 Ga0209983_10024355 331
75 3300027876 Ga0209974_10000131 Ga0209974_1000013118 331
76 3300028380 Ga0268265_10020042 Ga0268265_100200424 331
77 3300036712 Ga0316584_0020905 Ga0316584_0020905_2464_3495 331
78 3300041407 Ga0439447_003988 Ga0439447_003988_11_1033 331
79 3300045051 Ga0451576_0105237 Ga0451576_0105237_1716_2729 331
80 3300046615 Ga0495656_0008788 Ga0495656_0008788_698_1702 331
81 3300046616 Ga0495668_0002791 Ga0495668_0002791_7211_8248 331
82 3300047318 Ga0495636_0006123 Ga0495636_0006123_1919_2923 331
83 3300048924 Ga0496121_0002594 Ga0496121_0002594_7286_8308 331
84 3300049593 Ga0501077_0133874 Ga0501077_0133874_521_1543 331
85 3300049743 Ga0501081_0062440 Ga0501081_0062440_1384_2406 331
86 3300050509 nmdc:mga0qj67_105217_c1 nmdc:mga0qj67_105217_c1_1233_2255 331
87 3300050510 nmdc:mga06r32_122800_c1 nmdc:mga06r32_122800_c1_1020_2042 331
88 3300050511 nmdc:mga08y16_18642_c1 nmdc:mga08y16_18642_c1_2138_3160 331
89 iso_pu_bacteria 2643221559 2643816565 331
90 iso_pu_bacteria 2643221573 2643881984 331
91 iso_pu_bacteria 2643221586 2643938755 331
92 iso_pu_bacteria 2643221612 2644077501 331
93 iso_pu_bacteria 2643221720 2644661643 331
94 iso_pu_bacteria 2643221727 2644694184 331
95 iso_pu_bacteria 2643221728 2644698669 331
96 3300002773 JGI25152J39213_1000164 JGI25152J39213_100016441 332
97 3300002774 JGI25150J39212_1000593 JGI25150J39212_100059310 332
98 3300003187 JGI25151J46595_10000351 JGI25151J46595_1000035141 332
99 3300003215 JGI25153J46596_10000219 JGI25153J46596_1000021941 332
100 3300003771 Ga0055526_1000428 Ga0055526_100042815 332
101 3300003773 Ga0055537_1000017 Ga0055537_100001794 332
102 3300003775 Ga0055524_1006439 Ga0055524_10064395 332
103 3300003784 Ga0055534_1000267 Ga0055534_100026716 332
104 3300003790 Ga0055528_1000182 Ga0055528_100018250 332
105 3300003791 Ga0055530_10003440 Ga0055530_100034404 332
106 3300005293 Ga0065715_10108207 Ga0065715_101082072 332
107 3300005328 Ga0070676_10048365 Ga0070676_100483652 332
108 3300005331 Ga0070670_100005162 Ga0070670_10000516213 332
109 3300005339 Ga0070660_100000587 Ga0070660_10000058713 332
110 3300005344 Ga0070661_100001353 Ga0070661_1000013537 332
111 3300005353 Ga0070669_100024506 Ga0070669_1000245062 332
112 3300005353 Ga0070669_100157365 Ga0070669_1001573653 332
113 3300005355 Ga0070671_100015900 Ga0070671_1000159003 332
114 3300005364 Ga0070673_100107294 Ga0070673_1001072942 332
115 3300005455 Ga0070663_100002342 Ga0070663_1000023429 332
116 3300005457 Ga0070662_100006931 Ga0070662_1000069312 332
117 3300005459 Ga0068867_100105084 Ga0068867_1001050843 332
118 3300005539 Ga0068853_100005105 Ga0068853_1000051054 332
119 3300005543 Ga0070672_100016367 Ga0070672_1000163673 332
120 3300005563 Ga0068855_100001654 Ga0068855_10000165423 332
121 3300005564 Ga0070664_100002697 Ga0070664_1000026974 332
122 3300005578 Ga0068854_100088482 Ga0068854_1000884822 332
123 3300005614 Ga0068856_100000827 Ga0068856_10000082726 332
124 3300005617 Ga0068859_100133658 Ga0068859_1001336584 332
125 3300006051 Ga0075364_10015794 Ga0075364_100157946 332
126 3300009011 Ga0105251_10000013 Ga0105251_1000001395 332
127 3300009011 Ga0105251_10004486 Ga0105251_100044865 332
128 3300009036 Ga0105244_10065948 Ga0105244_100659483 332
129 3300009148 Ga0105243_10002714 Ga0105243_100027146 332
130 3300010375 Ga0105239_10301794 Ga0105239_103017941 332
131 3300011119 Ga0105246_10144798 Ga0105246_101447982 332
132 3300013100 Ga0157373_10006999 Ga0157373_100069997 332
133 3300013102 Ga0157371_10136225 Ga0157371_101362252 332
134 3300013105 Ga0157369_10022061 Ga0157369_100220613 332
135 3300013306 Ga0163162_10378006 Ga0163162_103780061 332
136 3300013307 Ga0157372_10000521 Ga0157372_1000052129 332
137 3300013308 Ga0157375_10169554 Ga0157375_101695542 332
138 3300015261 Ga0182006_1006557 Ga0182006_10065576 332
139 3300015265 Ga0182005_1006319 Ga0182005_10063193 332
140 3300017792 Ga0163161_10006239 Ga0163161_1000623911 332
141 3300017792 Ga0163161_10015056 Ga0163161_100150565 332
142 3300025245 Ga0207425_1000111 Ga0207425_100011143 332
143 3300025258 Ga0209129_1000087 Ga0209129_1000087134 332
144 3300025263 Ga0209565_1000031 Ga0209565_1000031158 332
145 3300025273 Ga0209673_1000164 Ga0209673_100016461 332
146 3300025291 Ga0209675_1000015 Ga0209675_1000015257 332
147 3300025294 Ga0209025_1000013 Ga0209025_1000013439 332
148 3300025294 Ga0209025_1000023 Ga0209025_1000023109 332
149 3300025295 Ga0209564_1000037 Ga0209564_1000037112 332
150 3300025297 Ga0209758_1000014 Ga0209758_1000014439 332
151 3300025298 Ga0209050_1000417 Ga0209050_100041779 332
152 3300025304 Ga0209257_1012102 Ga0209257_10121026 332
153 3300025735 Ga0207713_1000262 Ga0207713_100026211 332
154 3300025735 Ga0207713_1018967 Ga0207713_10189673 332
155 3300025919 Ga0207657_10000387 Ga0207657_100003872 332
156 3300025920 Ga0207649_10002210 Ga0207649_1000221010 332
157 3300025925 Ga0207650_10013107 Ga0207650_100131073 332
158 3300025932 Ga0207690_10000921 Ga0207690_100009217 332
159 3300025933 Ga0207706_10000158 Ga0207706_1000015832 332
160 3300025935 Ga0207709_10001341 Ga0207709_1000134117 332
161 3300025935 Ga0207709_10026349 Ga0207709_100263493 332
162 3300025940 Ga0207691_10010547 Ga0207691_1001054710 332
163 3300025945 Ga0207679_10001446 Ga0207679_100014464 332
164 3300025945 Ga0207679_10083164 Ga0207679_100831643 332
165 3300025949 Ga0207667_10002884 Ga0207667_100028842 332
166 3300025981 Ga0207640_10056127 Ga0207640_100561272 332
167 3300026067 Ga0207678_10001676 Ga0207678_100016764 332
168 3300026078 Ga0207702_10009177 Ga0207702_100091778 332
169 3300026089 Ga0207648_10239178 Ga0207648_102391782 332
170 3300027312 Ga0209371_1000011 Ga0209371_1000011580 332
171 3300028379 Ga0268266_10018901 Ga0268266_100189013 332
172 3300030500 Ga0268256_1000011 Ga0268256_1000011580 332
173 3300031548 Ga0307408_100167126 Ga0307408_1001671262 332
174 3300031901 Ga0307406_10004938 Ga0307406_100049387 332
175 3300031911 Ga0307412_10091219 Ga0307412_100912192 332
176 3300038705 Ga0237819_00040 Ga0237819_00040_35571_36572 332
177 3300041404 Ga0439436_0016318 Ga0439436_0016318_269_1294 332
178 3300046460 Ga0495638_0000881 Ga0495638_0000881_5892_6893 332
179 3300046522 Ga0495643_0003922 Ga0495643_0003922_1014_2015 332
180 3300047320 Ga0495672_0000090 Ga0495672_0000090_44388_45389 332
181 3300047472 Ga0495686_0088642 Ga0495686_0088642_645_1646 332
182 3300048905 Ga0496102_0010174 Ga0496102_0010174_748_1791 332
183 3300048909 Ga0496106_0003315 Ga0496106_0003315_7166_8209 332
184 3300048920 Ga0496117_0000617 Ga0496117_0000617_50614_51615 332
185 3300048920 Ga0496117_0001304 Ga0496117_0001304_7383_8384 332
186 3300048921 Ga0496118_0000737 Ga0496118_0000737_51272_52273 332
187 3300048921 Ga0496118_0009570 Ga0496118_0009570_2741_3742 332
188 3300048921 Ga0496118_0017699 Ga0496118_0017699_4776_5777 332
189 3300048922 Ga0496119_0000329 Ga0496119_0000329_31652_32653 332
190 3300048922 Ga0496119_0006232 Ga0496119_0006232_9424_10425 332
191 3300048923 Ga0496120_0000147 Ga0496120_0000147_33629_34630 332
192 3300048923 Ga0496120_0000514 Ga0496120_0000514_11671_12672 332
193 3300048924 Ga0496121_0013642 Ga0496121_0013642_5881_6882 332
194 3300048925 Ga0496122_0000566 Ga0496122_0000566_73940_74941 332
195 3300048925 Ga0496122_0001044 Ga0496122_0001044_34843_35844 332
196 3300048925 Ga0496122_0040760 Ga0496122_0040760_1395_2396 332
197 3300048926 Ga0496123_0000150 Ga0496123_0000150_71036_72037 332
198 3300048926 Ga0496123_0000324 Ga0496123_0000324_30647_31648 332
199 3300048927 Ga0496124_0000680 Ga0496124_0000680_1015_2016 332
200 3300048927 Ga0496124_0012173 Ga0496124_0012173_1353_2354 332
201 3300048927 Ga0496124_0023155 Ga0496124_0023155_692_1693 332
202 3300048927 Ga0496124_0025020 Ga0496124_0025020_788_1789 332
203 3300048927 Ga0496124_0030972 Ga0496124_0030972_1131_2132 332
204 3300048927 Ga0496124_0080084 Ga0496124_0080084_490_1491 332
205 3300048927 Ga0496124_0109457 Ga0496124_0109457_21_1022 332
206 3300048928 Ga0496125_0006598 Ga0496125_0006598_5522_6523 332
207 3300048928 Ga0496125_0091668 Ga0496125_0091668_1065_2066 332
208 3300048928 Ga0496125_0128146 Ga0496125_0128146_542_1543 332
209 3300048929 Ga0496126_0000967 Ga0496126_0000967_47528_48529 332
210 iso_pu_bacteria 2643221593 2643977973 332
211 3300005288 Ga0065714_10017036 Ga0065714_100170362 333
212 3300005293 Ga0065715_10012939 Ga0065715_100129391 333
213 3300005329 Ga0070683_100116817 Ga0070683_1001168172 333
214 3300005564 Ga0070664_100012242 Ga0070664_1000122424 333
215 3300025921 Ga0207652_10196574 Ga0207652_101965742 333
216 3300025945 Ga0207679_10007460 Ga0207679_100074605 333
217 3300027876 Ga0209974_10017264 Ga0209974_100172643 333
218 3300032004 Ga0307414_10007779 Ga0307414_100077796 333
219 3300035398 Ga0316574_0095602 Ga0316574_0095602_390_1397 333
220 3300046558 Ga0495633_0025129 Ga0495633_0025129_1781_2806 333
221 iso_pu_bacteria 8003014200 8003016730 333
222 2162886007 SwRhRL2b_contig_772469 SwRhRL2b_0691.00001740 334
223 3300005289 Ga0065704_10070357 Ga0065704_1007035719 334
224 3300009174 Ga0105241_10004900 Ga0105241_1000490012 334
225 3300009545 Ga0105237_10036803 Ga0105237_100368034 334
226 3300009551 Ga0105238_10009300 Ga0105238_100093007 334
227 3300009993 Ga0105028_103485 Ga0105028_1034851 334
228 3300010375 Ga0105239_10005342 Ga0105239_100053424 334
229 3300013105 Ga0157369_10000001 Ga0157369_1000000177 334
230 3300025304 Ga0209257_1000623 Ga0209257_100062347 334
231 3300025914 Ga0207671_10004681 Ga0207671_100046812 334
232 3300025924 Ga0207694_10003766 Ga0207694_100037661 334
233 3300031456 Ga0307513_10000456 Ga0307513_1000045644 334
234 3300031456 Ga0307513_10091953 Ga0307513_100919532 334
235 3300032004 Ga0307414_10002500 Ga0307414_100025006 334
236 3300032004 Ga0307414_10027969 Ga0307414_100279694 334
237 3300041413 Ga0439465_0004469 Ga0439465_0004469_877_1917 334
238 3300041509 Ga0451843_1024113 Ga0451843_1024113_1112_2116 334
239 3300042007 Ga0439449_0000004 Ga0439449_0000004_2959_3999 334
240 3300046460 Ga0495638_0079411 Ga0495638_0079411_145_1155 334
241 3300046525 Ga0495663_0001521 Ga0495663_0001521_5319_6323 334
242 3300049569 Ga0501032_0015375 Ga0501032_0015375_611_1624 334
243 3300049570 Ga0501033_0015569 Ga0501033_0015569_2238_3251 334
244 3300049573 Ga0501037_0024657 Ga0501037_0024657_2675_3688 334
245 3300049573 Ga0501037_0246476 Ga0501037_0246476_81_1106 334
246 3300049574 Ga0501038_0021003 Ga0501038_0021003_3741_4754 334
247 3300049579 Ga0501043_0123271 Ga0501043_0123271_708_1721 334
248 3300049580 Ga0501046_0021192 Ga0501046_0021192_4320_5345 334
249 3300049584 Ga0501068_0110879 Ga0501068_0110879_387_1490 334
250 3300049586 Ga0501070_0253434 Ga0501070_0253434_154_1167 334
251 3300049589 Ga0501073_0073119 Ga0501073_0073119_81_1106 334
252 3300049822 Ga0501035_0053239 Ga0501035_0053239_2207_3220 334

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01380

SIS

SIS domain

130

262

0.98

PF00571

CBS

CBS domain

359

415

0.95

PF00571

CBS

CBS domain

291

349

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
2xhz-assembly1.cif.gz_B probing the active site of the sugar isomerase domain from e. coli arabinose-5-phosphate isomerase via x-ray crystallography 0.985 16 187
2xhz-assembly1.cif.gz_B probing the active site of the sugar isomerase domain from e. coli arabinose-5-phosphate isomerase via x-ray crystallography 0.9683 16 187
3fxa-assembly1.cif.gz_D crystal structure of a putative sugar-phosphate isomerase (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a resolution 0.9497 10 199
4o9k-assembly1.cif.gz_B crystal structure of the cbs pair of a putative d-arabinose 5-phosphate isomerase from methylococcus capsulatus in complex with cmp-kdo 0.9442 205 334
3etn-assembly1.cif.gz_C crystal structure of putative phosphosugar isomerase involved in capsule formation (yp_209877.1) from bacteroides fragilis nctc 9343 at 1.70 a resolution 0.9428 16 200
ID Description Score Start End Superfamily
af_P45395_11_201_3.40.50.10490 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glucose-6-phosphate isomerase like protein; domain 1 0.9801 16 204 3.40.50.10490
af_P45395_11_201_3.40.50.10490 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glucose-6-phosphate isomerase like protein; domain 1 0.965 16 204 3.40.50.10490
af_P17115_194_318_3.10.580.10 Alpha Beta;Roll;CBS-domain;CBS-domain 0.962 205 330 3.10.580.10
af_P45395_202_325_3.10.580.10 Alpha Beta;Roll;CBS-domain;CBS-domain 0.9548 206 330 3.10.580.10
af_P17115_194_318_3.10.580.10 Alpha Beta;Roll;CBS-domain;CBS-domain 0.9472 205 330 3.10.580.10
ID Description Score Start End GO Terms
AF-A0A656SJ60-F1-model_v4 deleted 0.9897 49 130
AF-A0A4V2AMI0-F1-model_v4 SIS domain-containing protein 0.9801 27 172 GO:0097367
GO:1901135
AF-A0A7C1G239-F1-model_v4 SIS domain-containing protein 0.9792 18 119 GO:0097367
GO:1901135
AF-A0A5C9ADZ1-F1-model_v4 KpsF/GutQ family sugar-phosphate isomerase 0.9721 12 200 GO:0005975
GO:0016853
GO:0097367
GO:1901135
AF-A0A382IFM7-F1-model_v4 SIS domain-containing protein 0.9692 11 134 GO:0097367
GO:1901135

Feature Viewer

pLDDT pTM Quality
91.11 0.65 Medium
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Predicted Structure (AlphaFold2)

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