F364151

General Info

Members Datasets Scaffolds Average Seq Length
253 187 506 339

Family's Representative Sequence

Representative Sequence 3300028794|Ga0307515_10035885|Ga0307515_100358858
Length 409
Sequence VSSSARFLNPSEAARRLGVSTKALRLYEERGLVAPDRSAAGWRAYGPDAMARAAEVVALRALGLSLAQVAQVRGGDARSLELALAAHQAALEDRLRALGGTIEKLRGLRADLARGQAPAAGALGGVLRPTSGLSVAFELPWPWGGDVFELHDLRPLSYIVGPLGSGKTRLALRLAEAVPNAVFLGLDRLADGGAAARARLDADSALRSRVDQAVAWLVGDGATASAALIALLVGLATAEPTIVVVDMVEQDLDQATQEAVIAHLRQRGRAGGPALALTTRSSAILDLAAVGSDEAIILCPANHSPPVCVAPYPGAPGYEAVATCLASPDVRARTHGVVASRGRSGEAIERVADLVAHRVAAGVSSVVDDDQSCVGPRAGELPGGVERRPEVEAAVEQDPGDAGQPASVA

Samples

Sample ID Description Type Environment
1 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
6 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
7 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
8 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
21 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
22 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
23 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
24 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
25 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
26 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300009763 Root nodule microbial communities of legume samples collected from Mexico - Siratro Mexico nodule mix Metagenome Nodule
33 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
34 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
35 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
36 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
37 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
38 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
39 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
40 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
41 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
42 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
43 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
44 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
45 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
46 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
47 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
48 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
50 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
51 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
53 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
69 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
70 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
71 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
72 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
73 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
74 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
75 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
76 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
77 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
78 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
79 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
80 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
81 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
82 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
83 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
84 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
85 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
86 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
87 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
88 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
89 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
90 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
91 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
92 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
93 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
94 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
95 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
96 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
97 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
98 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
99 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
100 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
101 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
102 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
103 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
104 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
105 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
106 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
107 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
108 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
109 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
110 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
111 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
112 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
113 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
114 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
115 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
116 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
117 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
118 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
120 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
121 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
122 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
123 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
124 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
125 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
126 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
127 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
128 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
129 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
130 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
131 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
132 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
133 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
134 3300053128 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 endosphere Metagenome Endosphere
135 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
136 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
137 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
138 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
139 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
140 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
141 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
142 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
143 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
144 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
145 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
146 2510917028 Rhizobium sp. CF122 Isolate Rhizosphere
147 2513237137 Bradyrhizobium elkanii USDA 94 Isolate Nodule
148 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
149 2551306416 Herbaspirillum seropedicae Os34 Isolate Unclassified
150 2562617112 Burkholderia sp. BT03 Isolate Rhizosphere
151 2582581867 Rhizobium sp. OV201 Isolate Rhizosphere
152 2585427590 Rhizobium sp. CF048 Isolate Rhizosphere
153 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
154 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
155 2599185214 Variovorax sp. NFACC26 Isolate Rhizoplane
156 2599185226 Variovorax sp. NFACC27 Isolate Rhizoplane
157 2599185227 Variovorax sp. NFACC28 Isolate Rhizoplane
158 2599185229 Variovorax sp. NFACC29 Isolate Endosphere
159 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
160 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
161 2643221658 Variovorax sp. Root411 Isolate Unclassified
162 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
163 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
164 2643221672 Variovorax sp. Root434 Isolate Unclassified
165 2711768613 Burkholderia sp. BT03 Isolate Rhizosphere
166 2728368998 Bradyrhizobium macuxiense BR 10303 Isolate Nodule
167 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
168 2885211737 Variovorax sp. 553 Isolate Unclassified
169 2899803654 Agrobacterium sp. a22-2 Isolate Unclassified
170 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
171 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
172 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
173 2904699407
174 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
175 2921643360 Paraburkholderia steynii HC1.1ba Isolate Nodule
176 2923556063 Rhizobium tibeticum 3740 Isolate Unclassified
177 2928070936 Variovorax gossypii 1167 Isolate Unclassified
178 2928084124 Variovorax paradoxus 1218 Isolate Unclassified
179 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
180 2929520902 Variovorax beijingensis 502 Isolate Unclassified
181 2935630451 Bradyrhizobium sp. I1.14.4 Isolate Nodule
182 2941507105 Bradyrhizobium sp. i1.12.3 Isolate Nodule
183 2941515067 Bradyrhizobium sp. i1.14.1 Isolate Nodule
184 2941523033 Bradyrhizobium sp. i1.8.4 Isolate Nodule
185 2945909444 Variovorax sp. CRF3-Va-1 W1I1 Isolate Rhizosphere
186 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere
187 8024486573 Rhizobium tubonense CCBAU 85046 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 82.54
Metatranscriptomes 1.19
Isolates 16.27

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 27.67
Nodule 7.11
Rhizoplane 5.14
Rhizosphere 35.57
Stem 0
Stem Tuber 0
Unclassified 1.19

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307515_10035885 3300028794 Bacteria 8046
2 JGI25151J46595_10000826 3300003187 Bacteria 24661
3 JGI25151J46595_10002326 3300003187 Bacteria 11589
4 JGI25165J46597_1012347 3300003214 Bacteria 1195
5 JGI25165J46597_1012402 3300003214 Bacteria 1191
6 rootH1_10290526 3300003323 Bacteria 1074
7 Ga0006562J51391_1121476 3300003578 Bacteria 6820
8 Ga0006562J51391_1121478 3300003578 Bacteria 4880
9 Ga0055530_10008180 3300003791 Bacteria 4237
10 Ga0055530_10008531 3300003791 Bacteria 4089
11 Ga0055540_1001842 3300003792 Bacteria 11954
12 Ga0055540_1001903 3300003792 Bacteria 11689
13 Ga0055531_10002636 3300003794 Bacteria 11867
14 Ga0055531_10004330 3300003794 Bacteria 8685
15 Ga0070709_10000773 3300005434 Bacteria 17933
16 Ga0070714_100003361 3300005435 Bacteria 11923
17 Ga0070713_100011368 3300005436 Bacteria 6482
18 Ga0070710_10000439 3300005437 Bacteria 19519
19 Ga0070711_100008574 3300005439 Bacteria 6269
20 Ga0070681_10011734 3300005458 Bacteria 8681
21 Ga0070681_10278831 3300005458 Bacteria 1582
22 Ga0070679_100294032 3300005530 Bacteria 1575
23 Ga0070684_100065744 3300005535 Bacteria 3183
24 Ga0068853_100318419 3300005539 Bacteria 1441
25 Ga0070665_100004850 3300005548 Bacteria 13977
26 Ga0070665_100057006 3300005548 Bacteria 3917
27 Ga0068860_100000280 3300005843 Bacteria 72849
28 Ga0081538_10013118 3300005981 Bacteria 6582
29 Ga0075365_10002452 3300006038 Bacteria 9106
30 Ga0075365_10015723 3300006038 Bacteria 4583
31 Ga0075365_10057213 3300006038 Unclassified 2594
32 Ga0075365_10140778 3300006038 Bacteria 1674
33 Ga0075365_10182262 3300006038 Bacteria 1468
34 Ga0075368_10012453 3300006042 Bacteria 3109
35 Ga0075363_100011022 3300006048 Bacteria 4316
36 Ga0070716_100000998 3300006173 Bacteria 12360
37 Ga0075367_10001886 3300006178 Bacteria 9279
38 Ga0075369_10013346 3300006186 Bacteria 3260
39 Ga0075428_100010201 3300006844 Bacteria 10427
40 Ga0099824_1004050 3300006942 Bacteria 21204
41 Ga0111539_10094804 3300009094 Bacteria 3506
42 Ga0114129_10052487 3300009147 Bacteria 5721
43 Ga0105237_10070218 3300009545 Bacteria 3498
44 Ga0105237_10091672 3300009545 Bacteria 3028
45 Ga0123340_1047141 3300009763 Bacteria 1714
46 Ga0123341_1064722 3300009765 Bacteria 1714
47 Ga0123341_1064999 3300009765 Bacteria 1704
48 Ga0123342_1010951 3300009766 Bacteria 10166
49 Ga0157373_10026023 3300013100 Bacteria 4228
50 Ga0157374_10402323 3300013296 Bacteria 1366
51 Ga0157378_10111151 3300013297 Bacteria 2512
52 Ga0157372_10210692 3300013307 Bacteria 2252
53 Ga0163161_10000118 3300017792 Bacteria 75123
54 Ga0213873_10002300 3300021358 Bacteria 3291
55 Ga0213872_10081292 3300021361 Bacteria 1456
56 Ga0213876_10001131 3300021384 Bacteria 17004
57 Ga0213876_10031639 3300021384 Bacteria 2791
58 Ga0213871_10001781 3300021441 Bacteria 3752
59 Ga0224572_1001855 3300024225 Plasmid 3259
60 Ga0207427_104486 3300025231 Bacteria 2329
61 Ga0209233_1003076 3300025261 Bacteria 5941
62 Ga0209233_1009083 3300025261 Bacteria 3042
63 Ga0209130_1001234 3300025284 Bacteria 17961
64 Ga0209676_1000403 3300025292 Bacteria 78171
65 Ga0209025_1000313 3300025294 Bacteria 107850
66 Ga0209025_1000514 3300025294 Bacteria 73822
67 Ga0209758_1000058 3300025297 Bacteria 331603
68 Ga0209758_1001166 3300025297 Bacteria 33385
69 Ga0209758_1003051 3300025297 Bacteria 15938
70 Ga0209050_1001095 3300025298 Bacteria 32903
71 Ga0209050_1005667 3300025298 Bacteria 7728
72 Ga0207426_1000066 3300025302 Bacteria 351182
73 Ga0209051_1000423 3300025303 Bacteria 58174
74 Ga0209051_1001614 3300025303 Bacteria 18391
75 Ga0209257_1000215 3300025304 Bacteria 136521
76 Ga0207692_10000972 3300025898 Bacteria 10423
77 Ga0207699_10003891 3300025906 Bacteria 7133
78 Ga0207707_10016643 3300025912 Bacteria 6410
79 Ga0207707_10250459 3300025912 Bacteria 1539
80 Ga0207671_10069005 3300025914 Bacteria 2635
81 Ga0207663_10006028 3300025916 Bacteria 6162
82 Ga0207652_10256842 3300025921 Bacteria 1576
83 Ga0207700_10002317 3300025928 Bacteria 10915
84 Ga0207664_10016370 3300025929 Bacteria 5409
85 Ga0207661_10070873 3300025944 Bacteria 2846
86 Ga0207661_10136277 3300025944 Bacteria 2109
87 Ga0207708_10224222 3300026075 Bacteria 1507
88 Ga0207683_10056648 3300026121 Bacteria 3439
89 Ga0268266_10042827 3300028379 Bacteria 3868
90 Ga0268266_10148993 3300028379 Bacteria 2107
91 Ga0268264_10000038 3300028381 Bacteria 383623
92 Ga0307517_10059496 3300028786 Bacteria 3657
93 Ga0307517_10107652 3300028786 Bacteria 2146
94 Ga0307515_10000471 3300028794 Bacteria 96225
95 Ga0307515_10017145 3300028794 Bacteria 13216
96 Ga0307515_10040292 3300028794 Bacteria 7391
97 Ga0307515_10040918 3300028794 Bacteria 7311
98 Ga0307515_10157511 3300028794 Bacteria 2335
99 Ga0307512_10129447 3300030522 Bacteria 1589
100 Ga0265760_10004496 3300031090 Unclassified 4000
101 Ga0307513_10018578 3300031456 Bacteria 8302
102 Ga0307513_10021093 3300031456 Bacteria 7698
103 Ga0307513_10113172 3300031456 Bacteria 2702
104 Ga0307513_10295759 3300031456 Bacteria 1388
105 Ga0307509_10004792 3300031507 Bacteria 19239
106 Ga0307509_10009865 3300031507 Bacteria 11814
107 Ga0307508_10000222 3300031616 Bacteria 69029
108 Ga0307516_10096547 3300031730 Bacteria 2776
109 Ga0307406_10050670 3300031901 Bacteria 2633
110 Ga0307415_100366046 3300032126 Bacteria 1219
111 Ga0307507_10183687 3300033179 Bacteria 1488
112 Ga0307510_10000011 3300033180 Bacteria 355464
113 Ga0307510_10050075 3300033180 Bacteria 4436
114 Ga0395898_0024634 3300037466 Bacteria 6070
115 Ga0436365_0351424 3300039437 Bacteria 9774
116 Ga0436365_0779597 3300039437 Bacteria 3569
117 Ga0436365_1264880 3300039437 Bacteria 5359
118 Ga0436360_0018717 3300039438 Bacteria 4352
119 Ga0436361_0028017 3300039447 Bacteria 1958
120 Ga0436361_0912633 3300039447 Bacteria 5236
121 Ga0436362_0162303 3300039453 Bacteria 5092
122 Ga0436362_1283701 3300039453 Bacteria 10006
123 Ga0439431_0021931 3300041997 Bacteria 1536
124 Ga0495627_002867 3300046453 Bacteria 7959
125 Ga0495603_0000983 3300046455 Bacteria 16436
126 Ga0495638_0002406 3300046460 Bacteria 15305
127 Ga0495638_0054241 3300046460 Bacteria 2492
128 Ga0495650_0041467 3300046471 Bacteria 1967
129 Ga0495580_0009299 3300046472 Bacteria 7732
130 Ga0495580_0125974 3300046472 Bacteria 1777
131 Ga0495610_0006267 3300046512 Bacteria 8240
132 Ga0495610_0028084 3300046512 Bacteria 2981
133 Ga0495616_0000410 3300046513 Bacteria 33119
134 Ga0495654_0005690 3300046530 Bacteria 7191
135 Ga0495665_0059101 3300046531 Bacteria 2024
136 Ga0495622_0051396 3300046557 Bacteria 1912
137 Ga0495668_0116309 3300046616 Bacteria 1462
138 Ga0495625_0000170 3300046660 Bacteria 102224
139 Ga0495625_0003029 3300046660 Bacteria 17237
140 Ga0495588_0057114 3300046674 Bacteria 2016
141 Ga0495613_0206023 3300046689 Bacteria 1385
142 Ga0495649_0070540 3300046694 Unclassified 1873
143 Ga0495674_0046318 3300047319 Bacteria 3860
144 Ga0495687_086675 3300047443 Bacteria 1210
145 Ga0495686_0022106 3300047472 Bacteria 4211
146 Ga0496100_0107804 3300048903 Bacteria 1930
147 Ga0496101_0158933 3300048904 Bacteria 1732
148 Ga0496101_0367517 3300048904 Bacteria 1131
149 Ga0496103_0207879 3300048906 Bacteria 1259
150 Ga0496103_0212504 3300048906 Bacteria 1244
151 Ga0496105_0006385 3300048908 Bacteria 9061
152 Ga0496106_0121052 3300048909 Bacteria 2046
153 Ga0496106_0310906 3300048909 Bacteria 1264
154 Ga0496107_0208454 3300048910 Bacteria 1453
155 Ga0496112_0008300 3300048915 Bacteria 9295
156 Ga0496117_0088387 3300048920 Bacteria 2005
157 Ga0496119_0001586 3300048922 Bacteria 27039
158 Ga0496121_0005020 3300048924 Bacteria 17302
159 Ga0496121_0053866 3300048924 Bacteria 3367
160 Ga0496121_0180371 3300048924 Bacteria 1525
161 Ga0496121_0189695 3300048924 Bacteria 1475
162 Ga0496121_0194706 3300048924 Bacteria 1450
163 Ga0496122_0000286 3300048925 Bacteria 112940
164 Ga0496122_0151290 3300048925 Bacteria 1432
165 Ga0496122_0172340 3300048925 Bacteria 1302
166 Ga0496123_0000066 3300048926 Bacteria 210327
167 Ga0496123_0001664 3300048926 Bacteria 29821
168 Ga0496123_0130754 3300048926 Bacteria 1391
169 Ga0496125_0000468 3300048928 Bacteria 72148
170 Ga0496125_0014286 3300048928 Bacteria 7739
171 Ga0496126_0207986 3300048929 Bacteria 1649
172 Ga0496126_0232748 3300048929 Bacteria 1543
173 Ga0496126_0266450 3300048929 Bacteria 1423
174 Ga0495682_0030568 3300049460 Bacteria 1992
175 Ga0501034_0141814 3300049571 Bacteria 2382
176 Ga0501080_0189225 3300049742 Bacteria 1892
177 nmdc:mga0yw44_865_c2 3300050492 Bacteria 5393
178 nmdc:mga06z11_5833_c1 3300050494 Bacteria 4971
179 nmdc:mga04h51_7059_c1 3300050495 Bacteria 1046
180 nmdc:mga07m45_138632_c1 3300050496 Bacteria 1408
181 nmdc:mga05p37_56623_c1 3300050507 Bacteria 4827
182 nmdc:mga0sz30_5803_c2 3300050516 Bacteria 4102
183 Ga0500643_025080 3300053087 Bacteria 1884
184 Ga0500646_0002815 3300053090 Bacteria 4470
185 Ga0500651_0000521 3300053093 Bacteria 19750
186 Ga0500641_0008544 3300053096 Bacteria 3658
187 Ga0500641_0044471 3300053096 Bacteria 1806
188 Ga0500556_0000097 3300053104 Bacteria 81329
189 Ga0500562_010804 3300053108 Bacteria 2316
190 Ga0500562_015350 3300053108 Bacteria 1964
191 Ga0500592_016757 3300053116 Bacteria 1177
192 Ga0500595_003014 3300053119 Bacteria 8017
193 Ga0500595_036641 3300053119 Bacteria 1605
194 Ga0500626_006593 3300053128 Bacteria 4650
195 Ga0500655_001230 3300053133 Bacteria 4861
196 Ga0500658_0000144 3300053134 Bacteria 33840
197 Ga0500658_0000244 3300053134 Bacteria 25588
198 Ga0500559_0025535 3300053136 Bacteria 2513
199 Ga0500559_0026451 3300053136 Bacteria 2471
200 Ga0500568_0004526 3300053139 Bacteria 7410
201 Ga0500573_0084936 3300053140 Bacteria 1795
202 Ga0500590_100547 3300053148 Bacteria 1389
203 Ga0500604_0000279 3300053151 Bacteria 14235
204 Ga0500616_0000309 3300053153 Bacteria 70113
205 Ga0500616_0001772 3300053153 Bacteria 19731
206 Ga0500634_0000020 3300053161 Bacteria 106250
207 Ga0500634_0022767 3300053161 Bacteria 3403
208 Ga0500636_0025166 3300053177 Bacteria 3517
209 Ga0500636_0053706 3300053177 Bacteria 2363
210 Ga0500636_0138810 3300053177 Bacteria 1347
211 Ga0500596_001618 3300053735 Bacteria 4571
212 2511182489 2510917028 Bacteria 6185411
213 2513863863 2513237137 Bacteria 9558895
214 2513865907 2513237138 Bacteria 7368160
215 2553007880 2551306416 Bacteria 6152985
216 2563063699 2562617112 Bacteria 10918404
217 2585400940 2582581867 Bacteria 7184437
218 2585822158 2585427590 Bacteria 6824633
219 2585996662 2585427633 Bacteria 6413184
220 2586001184 2585427634 Bacteria 6455027
221 2599627054 2599185214 Bacteria 8209958
222 2599676585 2599185226 Bacteria 8233575
223 2599684853 2599185227 Bacteria 8246414
224 2599696711 2599185229 Bacteria 8216126
225 2643782882 2643221552 Bacteria 5708754
226 2644087304 2643221614 Bacteria 4260023
227 2644326588 2643221658 Bacteria 6064537
228 2644344652 2643221661 Bacteria 4267604
229 2644366664 2643221666 Bacteria 4265935
230 2644396937 2643221672 Bacteria 6322190
231 2713474584 2711768613 Bacteria 11048459
232 2728752245 2728368998 Bacteria 8720350
233 2883297120 2883291878 Bacteria 5894118
234 2885213701 2885211737 Bacteria 7212420
235 2899808657 2899803654 Bacteria 5577784
236 2903757383 2903748898 Bacteria 9972761
237 2904543401 2904541872 Bacteria 8915136
238 2904698341 2904690495 Bacteria 9412302
239 2904700024
240 2919172951 2919171160 Bacteria 6499771
241 2921643564 2921643360 Bacteria 11448031
242 2923561078 2923556063 Bacteria 6793593
243 2928072643 2928070936 Bacteria 8062541
244 2928085815 2928084124 Bacteria 7159212
245 2929160634 2929160207 Bacteria 9075316
246 2929524240 2929520902 Bacteria 6765052
247 2935637110 2935630451 Bacteria 8169952
248 2941513803 2941507105 Bacteria 8166816
249 2941521765 2941515067 Bacteria 8166720
250 2941530859 2941523033 Bacteria 8169134
251 2945910294 2945909444 Bacteria 7065066
252 2945987664 2945984333 Bacteria 7358892
253 8024488449 8024486573 Bacteria 6540512
254 Ga0307515_10035885
255 JGI25151J46595_10000826
256 JGI25151J46595_10002326
257 JGI25165J46597_1012347
258 JGI25165J46597_1012402
259 rootH1_10290526
260 Ga0006562J51391_1121476
261 Ga0006562J51391_1121478
262 Ga0055530_10008180
263 Ga0055530_10008531
264 Ga0055540_1001842
265 Ga0055540_1001903
266 Ga0055531_10002636
267 Ga0055531_10004330
268 Ga0070709_10000773
269 Ga0070714_100003361
270 Ga0070713_100011368
271 Ga0070710_10000439
272 Ga0070711_100008574
273 Ga0070681_10011734
274 Ga0070681_10278831
275 Ga0070679_100294032
276 Ga0070684_100065744
277 Ga0068853_100318419
278 Ga0070665_100004850
279 Ga0070665_100057006
280 Ga0068860_100000280
281 Ga0081538_10013118
282 Ga0075365_10002452
283 Ga0075365_10015723
284 Ga0075365_10057213
285 Ga0075365_10140778
286 Ga0075365_10182262
287 Ga0075368_10012453
288 Ga0075363_100011022
289 Ga0070716_100000998
290 Ga0075367_10001886
291 Ga0075369_10013346
292 Ga0075428_100010201
293 Ga0099824_1004050
294 Ga0111539_10094804
295 Ga0114129_10052487
296 Ga0105237_10070218
297 Ga0105237_10091672
298 Ga0123340_1047141
299 Ga0123341_1064722
300 Ga0123341_1064999
301 Ga0123342_1010951
302 Ga0157373_10026023
303 Ga0157374_10402323
304 Ga0157378_10111151
305 Ga0157372_10210692
306 Ga0163161_10000118
307 Ga0213873_10002300
308 Ga0213872_10081292
309 Ga0213876_10001131
310 Ga0213876_10031639
311 Ga0213871_10001781
312 Ga0224572_1001855
313 Ga0207427_104486
314 Ga0209233_1003076
315 Ga0209233_1009083
316 Ga0209130_1001234
317 Ga0209676_1000403
318 Ga0209025_1000313
319 Ga0209025_1000514
320 Ga0209758_1000058
321 Ga0209758_1001166
322 Ga0209758_1003051
323 Ga0209050_1001095
324 Ga0209050_1005667
325 Ga0207426_1000066
326 Ga0209051_1000423
327 Ga0209051_1001614
328 Ga0209257_1000215
329 Ga0207692_10000972
330 Ga0207699_10003891
331 Ga0207707_10016643
332 Ga0207707_10250459
333 Ga0207671_10069005
334 Ga0207663_10006028
335 Ga0207652_10256842
336 Ga0207700_10002317
337 Ga0207664_10016370
338 Ga0207661_10070873
339 Ga0207661_10136277
340 Ga0207708_10224222
341 Ga0207683_10056648
342 Ga0268266_10042827
343 Ga0268266_10148993
344 Ga0268264_10000038
345 Ga0307517_10059496
346 Ga0307517_10107652
347 Ga0307515_10000471
348 Ga0307515_10017145
349 Ga0307515_10040292
350 Ga0307515_10040918
351 Ga0307515_10157511
352 Ga0307512_10129447
353 Ga0265760_10004496
354 Ga0307513_10018578
355 Ga0307513_10021093
356 Ga0307513_10113172
357 Ga0307513_10295759
358 Ga0307509_10004792
359 Ga0307509_10009865
360 Ga0307508_10000222
361 Ga0307516_10096547
362 Ga0307406_10050670
363 Ga0307415_100366046
364 Ga0307507_10183687
365 Ga0307510_10000011
366 Ga0307510_10050075
367 Ga0395898_0024634
368 Ga0436365_0351424
369 Ga0436365_0779597
370 Ga0436365_1264880
371 Ga0436360_0018717
372 Ga0436361_0028017
373 Ga0436361_0912633
374 Ga0436362_0162303
375 Ga0436362_1283701
376 Ga0439431_0021931
377 Ga0495627_002867
378 Ga0495603_0000983
379 Ga0495638_0002406
380 Ga0495638_0054241
381 Ga0495650_0041467
382 Ga0495580_0009299
383 Ga0495580_0125974
384 Ga0495610_0006267
385 Ga0495610_0028084
386 Ga0495616_0000410
387 Ga0495654_0005690
388 Ga0495665_0059101
389 Ga0495622_0051396
390 Ga0495668_0116309
391 Ga0495625_0000170
392 Ga0495625_0003029
393 Ga0495588_0057114
394 Ga0495613_0206023
395 Ga0495649_0070540
396 Ga0495674_0046318
397 Ga0495687_086675
398 Ga0495686_0022106
399 Ga0496100_0107804
400 Ga0496101_0158933
401 Ga0496101_0367517
402 Ga0496103_0207879
403 Ga0496103_0212504
404 Ga0496105_0006385
405 Ga0496106_0121052
406 Ga0496106_0310906
407 Ga0496107_0208454
408 Ga0496112_0008300
409 Ga0496117_0088387
410 Ga0496119_0001586
411 Ga0496121_0005020
412 Ga0496121_0053866
413 Ga0496121_0180371
414 Ga0496121_0189695
415 Ga0496121_0194706
416 Ga0496122_0000286
417 Ga0496122_0151290
418 Ga0496122_0172340
419 Ga0496123_0000066
420 Ga0496123_0001664
421 Ga0496123_0130754
422 Ga0496125_0000468
423 Ga0496125_0014286
424 Ga0496126_0207986
425 Ga0496126_0232748
426 Ga0496126_0266450
427 Ga0495682_0030568
428 Ga0501034_0141814
429 Ga0501080_0189225
430 nmdc:mga0yw44_865_c2
431 nmdc:mga06z11_5833_c1
432 nmdc:mga04h51_7059_c1
433 nmdc:mga07m45_138632_c1
434 nmdc:mga05p37_56623_c1
435 nmdc:mga0sz30_5803_c2
436 Ga0500643_025080
437 Ga0500646_0002815
438 Ga0500651_0000521
439 Ga0500641_0008544
440 Ga0500641_0044471
441 Ga0500556_0000097
442 Ga0500562_010804
443 Ga0500562_015350
444 Ga0500592_016757
445 Ga0500595_003014
446 Ga0500595_036641
447 Ga0500626_006593
448 Ga0500655_001230
449 Ga0500658_0000144
450 Ga0500658_0000244
451 Ga0500559_0025535
452 Ga0500559_0026451
453 Ga0500568_0004526
454 Ga0500573_0084936
455 Ga0500590_100547
456 Ga0500604_0000279
457 Ga0500616_0000309
458 Ga0500616_0001772
459 Ga0500634_0000020
460 Ga0500634_0022767
461 Ga0500636_0025166
462 Ga0500636_0053706
463 Ga0500636_0138810
464 Ga0500596_001618
465 2511182489
466 2513863863
467 2513865907
468 2553007880
469 2563063699
470 2585400940
471 2585822158
472 2585996662
473 2586001184
474 2599627054
475 2599676585
476 2599684853
477 2599696711
478 2643782882
479 2644087304
480 2644326588
481 2644344652
482 2644366664
483 2644396937
484 2713474584
485 2728752245
486 2883297120
487 2885213701
488 2899808657
489 2903757383
490 2904543401
491 2904698341
492 2904700024
493 2919172951
494 2921643564
495 2923561078
496 2928072643
497 2928085815
498 2929160634
499 2929524240
500 2935637110
501 2941513803
502 2941521765
503 2941530859
504 2945910294
505 2945987664
506 8024488449

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00376

MerR

MerR family regulatory protein

9

45

0.97

PF13411

MerR_1

MerR HTH family regulatory protein

8

74

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
7tea-assembly2.cif.gz_C crystal structure of s. aureus glnr-dna complex 0.9469 6 72
4r4e-assembly1.cif.gz_B structure of glnr-dna complex 0.9289 3 72
7tec-assembly1.cif.gz_A-2 structure of the listeria monocytogenes glnr-dna complex to 3.45 angstrom 0.926 6 66
4r4e-assembly1.cif.gz_A structure of glnr-dna complex 0.9068 6 72
4r24-assembly1.cif.gz_B complete dissection of b. subtilis nitrogen homeostatic circuitry 0.9026 6 67
ID Description Score Start End Superfamily
af_P33358_1_73_1.10.1660.10 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.9219 4 74 1.10.1660.10
4r4eA00 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.9068 6 72 1.10.1660.10
af_O06302_4_79_1.10.1660.10 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.8942 3 70 1.10.1660.10
4r22B00 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.8905 6 72 1.10.1660.10
af_P33358_1_73_1.10.1660.10 Mainly Alpha;Orthogonal Bundle;Multidrug-efflux Transporter Regulator; Chain: A; Domain 2; 0.8867 4 74 1.10.1660.10
ID Description Score Start End GO Terms
AF-A0A7V8FRU9-F1-model_v4 AAA+ ATPase domain-containing protein 0.9646 131 335
AF-A0A2C6DJV8-F1-model_v4 MerR family transcriptional regulator 0.9513 1 70 GO:0003677
GO:0003700
GO:0005829
AF-D3F0T3-F1-model_v4 Transcriptional regulator, MerR family 0.9441 3 59 GO:0003677
GO:0003700
GO:0005829
AF-A0A7V8FRU9-F1-model_v4 AAA+ ATPase domain-containing protein 0.9378 131 335
AF-A0A527ZJR8-F1-model_v4 MerR family transcriptional regulator 0.934 180 335

Map