F368664

General Info

Members Datasets Scaffolds Average Seq Length
259 146 255 342

Family's Representative Sequence

Representative Sequence 3300005548|Ga0070665_100000198|Ga0070665_10000019842
Length 379
Sequence MIEGGAWLGWYSPAGLSDPMRRGLTVLMTSASQPTTPRLLRALAGETLDRPPVWFMRQAGRSLPEYRELRAKAPDFIAFCHNPEMAAEATLQPMRRFAFDAAIVFADILLVPRALGQEVWFEAGEGPRLSPLPAIGDLEDQVDASTRRLAEIGETLRRVRAELEPDRALIGFAGAPWTVATYMIEGRGSEREAARAFAYAQPERLDALLAVLVEATARYLVMQARAGAQALKLFESWAEGLAEDVFERVVIAPHVAIVEKVRAAGVTAPFIGFPRGAGALVETYAEAAPVEAVALDTQAPAALGRRLQAQGRTIQGALDNLLLRQGGPALDARVDQLLEQWGRGPYIFNLGHGVLPDTPIEHIARVVERITGRPARAAA

Samples

Sample ID Description Type Environment
1 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
2 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
3 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
4 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
7 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
8 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
11 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
14 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
15 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
16 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
17 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
33 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
34 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
35 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
36 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
39 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
44 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
47 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
48 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
51 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
52 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
53 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
54 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
55 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
56 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
87 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
88 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
89 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
90 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
91 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
92 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
93 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
94 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
95 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
96 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
97 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
98 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
99 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
100 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
101 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
102 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
103 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
104 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
105 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
106 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
107 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
108 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
109 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
110 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
111 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
112 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
113 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
114 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
115 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
116 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
117 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
118 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
119 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
120 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
121 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
122 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
123 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
124 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
128 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
129 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
130 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
131 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
132 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
133 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
134 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
135 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
136 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
137 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
138 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
139 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
140 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
141 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
142 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
143 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
144 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
145 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
146 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.46
Metatranscriptomes 0
Isolates 1.54

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.67
Nodule 0
Rhizoplane 2.32
Rhizosphere 75.68
Stem 0
Stem Tuber 0
Unclassified 7.34

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10045554 3300003215 Bacteria 1307
2 Ga0055530_10000313 3300003791 Bacteria 44170
3 Ga0055531_10002388 3300003794 Bacteria 12617
4 Ga0065165_1005530 3300005262 Bacteria 7058
5 Ga0065165_1013255 3300005262 Bacteria 3291
6 Ga0070658_10058587 3300005327 Bacteria 3135
7 Ga0070658_10104558 3300005327 Bacteria 2343
8 Ga0070658_10140457 3300005327 Bacteria 2017
9 Ga0070670_100000004 3300005331 Bacteria 392110
10 Ga0070670_100132461 3300005331 Bacteria 2153
11 Ga0070666_10040130 3300005335 Bacteria 3123
12 Ga0070666_10121005 3300005335 Bacteria 1815
13 Ga0070680_100001568 3300005336 Bacteria 16671
14 Ga0070660_100019186 3300005339 Bacteria 5006
15 Ga0070660_100148034 3300005339 Bacteria 1887
16 Ga0070660_100252292 3300005339 Bacteria 1439
17 Ga0070691_10016447 3300005341 Bacteria 3397
18 Ga0070668_100000279 3300005347 Bacteria 33807
19 Ga0070668_100007881 3300005347 Bacteria 7907
20 Ga0070668_100015301 3300005347 Bacteria 5732
21 Ga0070668_100045250 3300005347 Bacteria 3377
22 Ga0070668_100071822 3300005347 Bacteria 2696
23 Ga0070669_100011256 3300005353 Bacteria 6353
24 Ga0070669_100110842 3300005353 Bacteria 2082
25 Ga0070671_100001769 3300005355 Bacteria 16417
26 Ga0070671_100063533 3300005355 Bacteria 3074
27 Ga0070671_100159910 3300005355 Bacteria 1904
28 Ga0070659_100009445 3300005366 Bacteria 7164
29 Ga0070659_100040551 3300005366 Bacteria 3639
30 Ga0070667_100005898 3300005367 Bacteria 10200
31 Ga0070667_100010076 3300005367 Bacteria 7826
32 Ga0070667_100035459 3300005367 Bacteria 4179
33 Ga0070667_100412678 3300005367 Bacteria 1230
34 Ga0070679_100009290 3300005530 Bacteria 9295
35 Ga0070679_100054846 3300005530 Bacteria 3969
36 Ga0068853_100011535 3300005539 Bacteria 7185
37 Ga0070665_100000198 3300005548 Bacteria 105999
38 Ga0070665_100000721 3300005548 Bacteria 44003
39 Ga0070665_100209272 3300005548 Bacteria 1951
40 Ga0070665_100261825 3300005548 Bacteria 1731
41 Ga0068855_100044020 3300005563 Bacteria 5285
42 Ga0068855_100435878 3300005563 Bacteria 1432
43 Ga0070664_100172340 3300005564 Bacteria 1920
44 Ga0068857_100333603 3300005577 Bacteria 1402
45 Ga0068859_100004565 3300005617 Bacteria 14125
46 Ga0068859_100124877 3300005617 Bacteria 2642
47 Ga0068864_100000106 3300005618 Bacteria 81202
48 Ga0068864_100011668 3300005618 Bacteria 7255
49 Ga0068863_100000175 3300005841 Bacteria 67772
50 Ga0068863_100000560 3300005841 Bacteria 37696
51 Ga0068863_100006003 3300005841 Bacteria 11910
52 Ga0068863_100018797 3300005841 Bacteria 6613
53 Ga0068858_100000006 3300005842 Bacteria 256011
54 Ga0068858_100028847 3300005842 Bacteria 5153
55 Ga0068858_100114073 3300005842 Bacteria 2524
56 Ga0068858_100161004 3300005842 Bacteria 2113
57 Ga0068860_100000066 3300005843 Bacteria 182836
58 Ga0068860_100193561 3300005843 Bacteria 1968
59 Ga0068862_100000183 3300005844 Bacteria 68758
60 Ga0068862_100012627 3300005844 Bacteria 6992
61 Ga0068862_100015283 3300005844 Bacteria 6375
62 Ga0068862_100051349 3300005844 Bacteria 3526
63 Ga0068862_100535174 3300005844 Bacteria 1117
64 Ga0075368_10010616 3300006042 Bacteria 3334
65 Ga0075364_10004480 3300006051 Bacteria 8045
66 Ga0075367_10010451 3300006178 Bacteria 4875
67 Ga0075369_10036122 3300006186 Bacteria 2102
68 Ga0075366_10011401 3300006195 Bacteria 5018
69 Ga0075370_10019149 3300006353 Bacteria 3724
70 Ga0068871_100055771 3300006358 Bacteria 3209
71 Ga0068865_100093309 3300006881 Bacteria 2188
72 Ga0097620_100004565 3300006931 Bacteria 14125
73 Ga0097620_100124884 3300006931 Bacteria 2642
74 Ga0105251_10114137 3300009011 Bacteria 1229
75 Ga0105240_10003768 3300009093 Bacteria 23424
76 Ga0105240_10009694 3300009093 Bacteria 13602
77 Ga0105240_10026151 3300009093 Bacteria 7658
78 Ga0105240_10165729 3300009093 Bacteria 2621
79 Ga0105247_10128018 3300009101 Bacteria 1652
80 Ga0105241_10097379 3300009174 Bacteria 2332
81 Ga0105248_10002055 3300009177 Bacteria 22287
82 Ga0105248_10030965 3300009177 Bacteria 5977
83 Ga0105248_10046035 3300009177 Bacteria 4890
84 Ga0105248_10068560 3300009177 Bacteria 3982
85 Ga0105238_10013031 3300009551 Bacteria 8391
86 Ga0105238_10022337 3300009551 Bacteria 6450
87 Ga0105238_10193324 3300009551 Bacteria 2010
88 Ga0105249_10000838 3300009553 Bacteria 27558
89 Ga0105249_10118251 3300009553 Bacteria 2515
90 Ga0105239_10070112 3300010375 Bacteria 3850
91 Ga0163162_10031447 3300013306 Bacteria 5264
92 Ga0163162_10061951 3300013306 Bacteria 3780
93 Ga0163162_10265703 3300013306 Bacteria 1847
94 Ga0157375_10033763 3300013308 Bacteria 4866
95 Ga0163163_10000786 3300014325 Bacteria 26889
96 Ga0163163_10021371 3300014325 Bacteria 6106
97 Ga0157379_10021826 3300014968 Bacteria 5672
98 Ga0157379_10120493 3300014968 Bacteria 2360
99 Ga0213872_10011335 3300021361 Bacteria 4219
100 Ga0209026_1000749 3300025250 Bacteria 18446
101 Ga0209758_1001380 3300025297 Bacteria 28958
102 Ga0209050_1000053 3300025298 Bacteria 349521
103 Ga0209257_1000419 3300025304 Bacteria 81956
104 Ga0209257_1004976 3300025304 Bacteria 9723
105 Ga0207697_10019798 3300025315 Bacteria 2757
106 Ga0207696_1010713 3300025711 Bacteria 3344
107 Ga0207680_10044566 3300025903 Bacteria 2610
108 Ga0207705_10001218 3300025909 Bacteria 20813
109 Ga0207705_10075181 3300025909 Bacteria 2453
110 Ga0207707_10004282 3300025912 Bacteria 12629
111 Ga0207707_10080873 3300025912 Bacteria 2837
112 Ga0207695_10000269 3300025913 Bacteria 130183
113 Ga0207695_10001168 3300025913 Bacteria 45314
114 Ga0207695_10005132 3300025913 Bacteria 17533
115 Ga0207695_10005524 3300025913 Bacteria 16736
116 Ga0207695_10014255 3300025913 Bacteria 9428
117 Ga0207695_10300926 3300025913 Bacteria 1495
118 Ga0207660_10075838 3300025917 Bacteria 2457
119 Ga0207657_10000235 3300025919 Bacteria 58394
120 Ga0207657_10012071 3300025919 Bacteria 8543
121 Ga0207652_10011897 3300025921 Bacteria 7020
122 Ga0207681_10009523 3300025923 Bacteria 5938
123 Ga0207681_10206524 3300025923 Bacteria 1511
124 Ga0207694_10074084 3300025924 Bacteria 2665
125 Ga0207694_10101444 3300025924 Bacteria 2280
126 Ga0207694_10243483 3300025924 Bacteria 1470
127 Ga0207650_10000033 3300025925 Bacteria 226809
128 Ga0207650_10021791 3300025925 Bacteria 4531
129 Ga0207650_10074910 3300025925 Bacteria 2553
130 Ga0207644_10001094 3300025931 Bacteria 17394
131 Ga0207644_10040261 3300025931 Bacteria 3302
132 Ga0207644_10064996 3300025931 Bacteria 2652
133 Ga0207644_10127400 3300025931 Bacteria 1945
134 Ga0207690_10000031 3300025932 Bacteria 154724
135 Ga0207690_10331166 3300025932 Bacteria 1199
136 Ga0207711_10002318 3300025941 Bacteria 17056
137 Ga0207711_10005904 3300025941 Bacteria 10343
138 Ga0207711_10007627 3300025941 Bacteria 9048
139 Ga0207711_10038726 3300025941 Bacteria 4054
140 Ga0207679_10179469 3300025945 Bacteria 1750
141 Ga0207667_10020506 3300025949 Bacteria 7348
142 Ga0207667_10148910 3300025949 Bacteria 2409
143 Ga0207712_10000651 3300025961 Bacteria 27001
144 Ga0207712_10233491 3300025961 Bacteria 1478
145 Ga0207668_10000004 3300025972 Bacteria 201204
146 Ga0207668_10002432 3300025972 Bacteria 10876
147 Ga0207668_10002661 3300025972 Bacteria 10452
148 Ga0207668_10013798 3300025972 Bacteria 4986
149 Ga0207658_10033207 3300025986 Bacteria 3679
150 Ga0207658_10077262 3300025986 Bacteria 2540
151 Ga0207703_10000027 3300026035 Bacteria 209608
152 Ga0207703_10005972 3300026035 Bacteria 9755
153 Ga0207703_10186215 3300026035 Bacteria 1835
154 Ga0207639_10003312 3300026041 Bacteria 10846
155 Ga0207639_10155086 3300026041 Bacteria 1923
156 Ga0207641_10000003 3300026088 Bacteria 496984
157 Ga0207641_10019402 3300026088 Bacteria 5581
158 Ga0207641_10196603 3300026088 Bacteria 1856
159 Ga0207676_10001496 3300026095 Bacteria 17256
160 Ga0207676_10002933 3300026095 Bacteria 12151
161 Ga0207676_10064724 3300026095 Bacteria 2909
162 Ga0207674_10282438 3300026116 Bacteria 1608
163 Ga0207674_10390175 3300026116 Bacteria 1346
164 Ga0268266_10000003 3300028379 Bacteria 1701703
165 Ga0268266_10001373 3300028379 Bacteria 29333
166 Ga0268266_10043880 3300028379 Bacteria 3822
167 Ga0268265_10002368 3300028380 Bacteria 14262
168 Ga0268265_10002911 3300028380 Bacteria 12568
169 Ga0268265_10007932 3300028380 Bacteria 7166
170 Ga0268265_10391212 3300028380 Bacteria 1282
171 Ga0268264_10000113 3300028381 Bacteria 203262
172 Ga0268264_10084867 3300028381 Bacteria 2716
173 Ga0268264_10137982 3300028381 Bacteria 2171
174 Ga0307517_10014862 3300028786 Bacteria 10407
175 Ga0307517_10103730 3300028786 Bacteria 2220
176 Ga0265338_10020070 3300028800 Bacteria 7048
177 Ga0265338_10047742 3300028800 Bacteria 3906
178 Ga0307511_10029350 3300030521 Bacteria 4969
179 Ga0265327_10000591 3300031251 Bacteria 60639
180 Ga0265327_10001587 3300031251 Bacteria 27712
181 Ga0307513_10000178 3300031456 Bacteria 91751
182 Ga0307513_10004553 3300031456 Bacteria 18488
183 Ga0307513_10149606 3300031456 Bacteria 2246
184 Ga0307516_10000144 3300031730 Bacteria 87138
185 Ga0307510_10007759 3300033180 Bacteria 12800
186 Ga0307510_10058839 3300033180 Bacteria 3975
187 Ga0373936_0001577 3300035113 Bacteria 8320
188 Ga0373935_0097399 3300035692 Bacteria 1935
189 Ga0373927_0000111 3300035695 Bacteria 62031
190 Ga0373925_0000209 3300037068 Bacteria 64086
191 Ga0395899_0017271 3300037312 Bacteria 5498
192 Ga0395899_0126484 3300037312 Bacteria 1827
193 Ga0395900_0000002 3300037418 Bacteria 671103
194 Ga0395898_0077581 3300037466 Bacteria 3207
195 Ga0395905_0011450 3300037471 Bacteria 8572
196 Ga0395905_0127372 3300037471 Bacteria 2394
197 Ga0395901_0001134 3300038443 Bacteria 28242
198 Ga0395901_0244145 3300038443 Bacteria 1872
199 Ga0436365_1511548 3300039437 Bacteria 5258
200 Ga0436361_0996005 3300039447 Bacteria 6512
201 Ga0436361_1191378 3300039447 Bacteria 2908
202 Ga0439442_010241 3300042002 Bacteria 1900
203 Ga0466961_0173231 3300044693 Bacteria 1342
204 Ga0495650_0036476 3300046471 Bacteria 2151
205 Ga0495642_0011775 3300046528 Bacteria 3369
206 Ga0495609_0014117 3300046538 Bacteria 3760
207 Ga0495597_0002967 3300046542 Bacteria 10281
208 Ga0495622_0022837 3300046557 Bacteria 2916
209 Ga0495668_0027995 3300046616 Bacteria 3190
210 Ga0495588_0054783 3300046674 Bacteria 2058
211 Ga0495669_0000007 3300046684 Bacteria 180797
212 Ga0495669_0000548 3300046684 Bacteria 16774
213 Ga0495669_0012358 3300046684 Bacteria 3634
214 Ga0495669_0127996 3300046684 Bacteria 1194
215 Ga0495672_0140841 3300047320 Bacteria 1260
216 Ga0495686_0026504 3300047472 Bacteria 3791
217 Ga0496108_0183872 3300048911 Bacteria 1810
218 Ga0496109_0039822 3300048912 Bacteria 4255
219 Ga0496112_0137386 3300048915 Bacteria 2414
220 Ga0496112_0173108 3300048915 Bacteria 2124
221 Ga0496115_0000460 3300048918 Bacteria 32584
222 Ga0496115_0004365 3300048918 Bacteria 10236
223 Ga0496117_0023735 3300048920 Bacteria 4875
224 Ga0496118_0008171 3300048921 Bacteria 10889
225 Ga0496119_0052229 3300048922 Bacteria 2505
226 Ga0496121_0000042 3300048924 Bacteria 342304
227 Ga0501033_0024133 3300049570 Bacteria 4589
228 Ga0501047_0002245 3300049581 Bacteria 18488
229 Ga0501047_0194827 3300049581 Bacteria 1889
230 Ga0501035_0321961 3300049822 Bacteria 1299
231 Ga0501044_0041180 3300049823 Bacteria 4809
232 Ga0501044_0108432 3300049823 Bacteria 2787
233 nmdc:mga00v17_2761_c1 3300050491 Bacteria 9010
234 nmdc:mga0k408_19782_c1 3300050493 Bacteria 3766
235 nmdc:mga04h51_14505_c2 3300050495 Bacteria 1618
236 nmdc:mga07m45_147282_c1 3300050496 Bacteria 1365
237 nmdc:mga07m45_697_c1 3300050496 Bacteria 14268
238 nmdc:mga0sz30_1586_c2 3300050516 Bacteria 6322
239 Ga0500635_0000051 3300053080 Bacteria 76510
240 Ga0500583_0033968 3300053092 Bacteria 2263
241 Ga0500651_0005008 3300053093 Bacteria 7514
242 Ga0500641_0023474 3300053096 Bacteria 2372
243 Ga0500562_001555 3300053108 Bacteria 5684
244 Ga0500562_004227 3300053108 Bacteria 3630
245 Ga0500569_000114 3300053109 Bacteria 12490
246 Ga0500572_000638 3300053111 Bacteria 11613
247 Ga0500595_000938 3300053119 Bacteria 16518
248 Ga0500595_006517 3300053119 Bacteria 4942
249 Ga0500608_012667 3300053122 Bacteria 3705
250 Ga0500658_0036053 3300053134 Bacteria 1961
251 Ga0500622_0007932 3300053156 Bacteria 5978
252 Ga0500637_0001261 3300053178 Bacteria 10594
253 Ga0500637_0013005 3300053178 Bacteria 4349
254 Ga0500645_000539 3300053730 Bacteria 25211
255 Ga0500596_004569 3300053735 Bacteria 2525

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300026116 Ga0207674_10390175 Ga0207674_103901751 304
2 3300009174 Ga0105241_10097379 Ga0105241_100973791 307
3 3300005530 Ga0070679_100054846 Ga0070679_1000548462 309
4 3300025924 Ga0207694_10074084 Ga0207694_100740842 310
5 iso_pu_bacteria 2643221614 2644087624 314
6 iso_pu_bacteria 2643221661 2644344332 314
7 iso_pu_bacteria 2643221666 2644366983 314
8 3300005331 Ga0070670_100132461 Ga0070670_1001324612 317
9 3300005341 Ga0070691_10016447 Ga0070691_100164474 317
10 3300005618 Ga0068864_100000106 Ga0068864_10000010660 317
11 3300005841 Ga0068863_100000175 Ga0068863_10000017561 317
12 3300025941 Ga0207711_10007627 Ga0207711_1000762710 317
13 3300026088 Ga0207641_10000003 Ga0207641_10000003333 317
14 3300026095 Ga0207676_10001496 Ga0207676_100014968 317
15 3300047320 Ga0495672_0140841 Ga0495672_0140841_278_1234 318
16 3300028786 Ga0307517_10014862 Ga0307517_100148625 320
17 3300031456 Ga0307513_10149606 Ga0307513_101496061 320
18 3300009093 Ga0105240_10165729 Ga0105240_101657292 321
19 3300046674 Ga0495588_0054783 Ga0495588_0054783_38_1006 322
20 3300005339 Ga0070660_100252292 Ga0070660_1002522922 324
21 3300009551 Ga0105238_10193324 Ga0105238_101933241 324
22 3300009553 Ga0105249_10000838 Ga0105249_1000083813 324
23 3300009553 Ga0105249_10118251 Ga0105249_101182512 324
24 3300013306 Ga0163162_10061951 Ga0163162_100619512 324
25 3300014968 Ga0157379_10021826 Ga0157379_100218263 324
26 3300053080 Ga0500635_0000051 Ga0500635_0000051_59675_60649 324
27 3300053178 Ga0500637_0001261 Ga0500637_0001261_8153_9127 324
28 3300009093 Ga0105240_10026151 Ga0105240_100261518 325
29 3300025913 Ga0207695_10014255 Ga0207695_100142558 325
30 3300053108 Ga0500562_004227 Ga0500562_004227_2515_3609 326
31 3300005327 Ga0070658_10104558 Ga0070658_101045582 328
32 3300025909 Ga0207705_10075181 Ga0207705_100751812 328
33 3300033180 Ga0307510_10007759 Ga0307510_100077595 328
34 3300048918 Ga0496115_0000460 Ga0496115_0000460_1353_2402 328
35 3300009551 Ga0105238_10013031 Ga0105238_100130315 329
36 3300025924 Ga0207694_10101444 Ga0207694_101014442 329
37 3300046528 Ga0495642_0011775 Ga0495642_0011775_2060_3109 329
38 3300031456 Ga0307513_10000178 Ga0307513_1000017882 330
39 3300005262 Ga0065165_1013255 Ga0065165_10132552 332
40 3300005844 Ga0068862_100535174 Ga0068862_1005351741 332
41 3300028380 Ga0268265_10391212 Ga0268265_103912121 332
42 3300035113 Ga0373936_0001577 Ga0373936_0001577_1663_2730 332
43 3300042002 Ga0439442_010241 Ga0439442_010241_819_1862 332
44 3300046471 Ga0495650_0036476 Ga0495650_0036476_825_1892 332
45 3300047472 Ga0495686_0026504 Ga0495686_0026504_125_1177 332
46 3300053730 Ga0500645_000539 Ga0500645_000539_23965_25017 332
47 3300005355 Ga0070671_100063533 Ga0070671_1000635333 333
48 3300005564 Ga0070664_100172340 Ga0070664_1001723402 333
49 3300005618 Ga0068864_100011668 Ga0068864_1000116682 333
50 3300006358 Ga0068871_100055771 Ga0068871_1000557713 333
51 3300013306 Ga0163162_10265703 Ga0163162_102657031 333
52 3300013308 Ga0157375_10033763 Ga0157375_100337634 333
53 3300025931 Ga0207644_10040261 Ga0207644_100402613 333
54 3300025945 Ga0207679_10179469 Ga0207679_101794692 333
55 3300026095 Ga0207676_10002933 Ga0207676_100029336 333
56 3300048911 Ga0496108_0183872 Ga0496108_0183872_95_1144 333
57 3300048912 Ga0496109_0039822 Ga0496109_0039822_1652_2701 333
58 3300005327 Ga0070658_10058587 Ga0070658_100585871 334
59 3300005336 Ga0070680_100001568 Ga0070680_10000156819 334
60 3300005339 Ga0070660_100019186 Ga0070660_1000191867 334
61 3300005366 Ga0070659_100040551 Ga0070659_1000405515 334
62 3300005530 Ga0070679_100009290 Ga0070679_1000092908 334
63 3300005539 Ga0068853_100011535 Ga0068853_1000115353 334
64 3300005563 Ga0068855_100044020 Ga0068855_1000440207 334
65 3300005577 Ga0068857_100333603 Ga0068857_1003336031 334
66 3300025909 Ga0207705_10001218 Ga0207705_1000121817 334
67 3300025912 Ga0207707_10004282 Ga0207707_100042823 334
68 3300025913 Ga0207695_10000269 Ga0207695_1000026994 334
69 3300025919 Ga0207657_10000235 Ga0207657_1000023535 334
70 3300025921 Ga0207652_10011897 Ga0207652_1001189710 334
71 3300025932 Ga0207690_10331166 Ga0207690_103311661 334
72 3300025949 Ga0207667_10020506 Ga0207667_100205062 334
73 3300026041 Ga0207639_10003312 Ga0207639_100033123 334
74 3300026116 Ga0207674_10282438 Ga0207674_102824381 334
75 3300053096 Ga0500641_0023474 Ga0500641_0023474_840_1895 334
76 3300009093 Ga0105240_10009694 Ga0105240_100096944 335
77 3300048915 Ga0496112_0173108 Ga0496112_0173108_846_1895 335
78 3300009177 Ga0105248_10068560 Ga0105248_100685602 336
79 3300025941 Ga0207711_10038726 Ga0207711_100387262 336
80 3300021361 Ga0213872_10011335 Ga0213872_100113355 338
81 3300039447 Ga0436361_0996005 Ga0436361_0996005_1593_2612 338
82 3300039447 Ga0436361_1191378 Ga0436361_1191378_1853_2872 338
83 3300053156 Ga0500622_0007932 Ga0500622_0007932_2633_3652 338
84 3300046616 Ga0495668_0027995 Ga0495668_0027995_1003_2022 339
85 iso_pu_bacteria 2643221598 2643999638 339
86 3300053111 Ga0500572_000638 Ga0500572_000638_9172_10194 340
87 3300005366 Ga0070659_100009445 Ga0070659_1000094455 341
88 3300005548 Ga0070665_100209272 Ga0070665_1002092722 341
89 3300026041 Ga0207639_10155086 Ga0207639_101550862 341
90 3300005347 Ga0070668_100007881 Ga0070668_1000078815 342
91 3300005353 Ga0070669_100110842 Ga0070669_1001108422 342
92 3300005355 Ga0070671_100159910 Ga0070671_1001599102 342
93 3300005367 Ga0070667_100035459 Ga0070667_1000354592 342
94 3300005617 Ga0068859_100124877 Ga0068859_1001248773 342
95 3300005841 Ga0068863_100006003 Ga0068863_10000600314 342
96 3300005842 Ga0068858_100161004 Ga0068858_1001610042 342
97 3300005844 Ga0068862_100015283 Ga0068862_1000152838 342
98 3300006931 Ga0097620_100124884 Ga0097620_1001248843 342
99 3300025923 Ga0207681_10206524 Ga0207681_102065242 342
100 3300025925 Ga0207650_10021791 Ga0207650_100217912 342
101 3300025931 Ga0207644_10127400 Ga0207644_101274002 342
102 3300025972 Ga0207668_10013798 Ga0207668_100137982 342
103 3300025986 Ga0207658_10033207 Ga0207658_100332073 342
104 3300026088 Ga0207641_10019402 Ga0207641_100194026 342
105 3300026095 Ga0207676_10064724 Ga0207676_100647242 342
106 3300028800 Ga0265338_10047742 Ga0265338_100477421 342
107 3300031251 Ga0265327_10000591 Ga0265327_1000059114 342
108 3300031251 Ga0265327_10001587 Ga0265327_100015874 342
109 3300031456 Ga0307513_10004553 Ga0307513_1000455317 342
110 3300033180 Ga0307510_10058839 Ga0307510_100588393 342
111 3300028800 Ga0265338_10020070 Ga0265338_100200701 343
112 3300046684 Ga0495669_0000007 Ga0495669_0000007_154809_155879 343
113 3300005347 Ga0070668_100015301 Ga0070668_1000153013 344
114 3300005367 Ga0070667_100412678 Ga0070667_1004126781 344
115 3300005843 Ga0068860_100000066 Ga0068860_10000006621 344
116 3300005844 Ga0068862_100051349 Ga0068862_1000513492 344
117 3300025972 Ga0207668_10002432 Ga0207668_100024326 344
118 3300025986 Ga0207658_10077262 Ga0207658_100772622 344
119 3300028380 Ga0268265_10002368 Ga0268265_100023682 344
120 3300028381 Ga0268264_10000113 Ga0268264_10000113172 344
121 3300031730 Ga0307516_10000144 Ga0307516_1000014439 344
122 3300005335 Ga0070666_10040130 Ga0070666_100401302 345
123 3300005347 Ga0070668_100045250 Ga0070668_1000452504 345
124 3300005353 Ga0070669_100011256 Ga0070669_1000112566 345
125 3300005355 Ga0070671_100001769 Ga0070671_1000017693 345
126 3300005367 Ga0070667_100005898 Ga0070667_1000058984 345
127 3300005548 Ga0070665_100261825 Ga0070665_1002618252 345
128 3300005617 Ga0068859_100004565 Ga0068859_10000456515 345
129 3300005841 Ga0068863_100018797 Ga0068863_1000187975 345
130 3300005842 Ga0068858_100000006 Ga0068858_100000006114 345
131 3300005842 Ga0068858_100028847 Ga0068858_1000288471 345
132 3300005843 Ga0068860_100193561 Ga0068860_1001935611 345
133 3300006042 Ga0075368_10010616 Ga0075368_100106164 345
134 3300006051 Ga0075364_10004480 Ga0075364_100044807 345
135 3300006178 Ga0075367_10010451 Ga0075367_100104516 345
136 3300006186 Ga0075369_10036122 Ga0075369_100361222 345
137 3300006195 Ga0075366_10011401 Ga0075366_100114013 345
138 3300006353 Ga0075370_10019149 Ga0075370_100191492 345
139 3300006931 Ga0097620_100004565 Ga0097620_10000456515 345
140 3300009011 Ga0105251_10114137 Ga0105251_101141372 345
141 3300009177 Ga0105248_10002055 Ga0105248_100020554 345
142 3300009177 Ga0105248_10030965 Ga0105248_100309654 345
143 3300013306 Ga0163162_10031447 Ga0163162_100314475 345
144 3300014325 Ga0163163_10000786 Ga0163163_1000078624 345
145 3300014325 Ga0163163_10021371 Ga0163163_100213712 345
146 3300014968 Ga0157379_10120493 Ga0157379_101204932 345
147 3300025315 Ga0207697_10019798 Ga0207697_100197982 345
148 3300025711 Ga0207696_1010713 Ga0207696_10107132 345
149 3300025903 Ga0207680_10044566 Ga0207680_100445662 345
150 3300025913 Ga0207695_10005524 Ga0207695_1000552411 345
151 3300025923 Ga0207681_10009523 Ga0207681_100095231 345
152 3300025925 Ga0207650_10074910 Ga0207650_100749102 345
153 3300025931 Ga0207644_10001094 Ga0207644_1000109418 345
154 3300025941 Ga0207711_10002318 Ga0207711_1000231814 345
155 3300025941 Ga0207711_10005904 Ga0207711_1000590411 345
156 3300025972 Ga0207668_10002661 Ga0207668_100026614 345
157 3300026035 Ga0207703_10000027 Ga0207703_1000002741 345
158 3300026035 Ga0207703_10005972 Ga0207703_100059725 345
159 3300026088 Ga0207641_10196603 Ga0207641_101966032 345
160 3300028381 Ga0268264_10084867 Ga0268264_100848671 345
161 3300039437 Ga0436365_1511548 Ga0436365_1511548_3736_4824 345
162 3300046538 Ga0495609_0014117 Ga0495609_0014117_2653_3690 345
163 3300046542 Ga0495597_0002967 Ga0495597_0002967_2838_3875 345
164 3300046557 Ga0495622_0022837 Ga0495622_0022837_35_1072 345
165 3300048920 Ga0496117_0023735 Ga0496117_0023735_2041_3078 345
166 3300048921 Ga0496118_0008171 Ga0496118_0008171_9410_10447 345
167 3300048922 Ga0496119_0052229 Ga0496119_0052229_306_1343 345
168 3300048924 Ga0496121_0000042 Ga0496121_0000042_147205_148242 345
169 3300049822 Ga0501035_0321961 Ga0501035_0321961_151_1221 345
170 3300049823 Ga0501044_0108432 Ga0501044_0108432_187_1287 345
171 3300050491 nmdc:mga00v17_2761_c1 nmdc:mga00v17_2761_c1_2770_3807 345
172 3300050493 nmdc:mga0k408_19782_c1 nmdc:mga0k408_19782_c1_427_1464 345
173 3300050495 nmdc:mga04h51_14505_c2 nmdc:mga04h51_14505_c2_261_1298 345
174 3300050496 nmdc:mga07m45_147282_c1 nmdc:mga07m45_147282_c1_318_1355 345
175 3300050496 nmdc:mga07m45_697_c1 nmdc:mga07m45_697_c1_2008_3045 345
176 3300050516 nmdc:mga0sz30_1586_c2 nmdc:mga0sz30_1586_c2_83_1120 345
177 3300053092 Ga0500583_0033968 Ga0500583_0033968_567_1604 345
178 3300053093 Ga0500651_0005008 Ga0500651_0005008_2504_3541 345
179 3300053109 Ga0500569_000114 Ga0500569_000114_5203_6240 345
180 3300053119 Ga0500595_000938 Ga0500595_000938_9577_10614 345
181 3300053122 Ga0500608_012667 Ga0500608_012667_677_1714 345
182 3300053134 Ga0500658_0036053 Ga0500658_0036053_567_1604 345
183 3300053178 Ga0500637_0013005 Ga0500637_0013005_2444_3481 345
184 3300053735 Ga0500596_004569 Ga0500596_004569_1006_2043 345
185 3300046684 Ga0495669_0000548 Ga0495669_0000548_6335_7444 346
186 3300005331 Ga0070670_100000004 Ga0070670_100000004136 348
187 3300005335 Ga0070666_10121005 Ga0070666_101210052 348
188 3300005347 Ga0070668_100000279 Ga0070668_1000002793 348
189 3300005347 Ga0070668_100071822 Ga0070668_1000718223 348
190 3300005367 Ga0070667_100010076 Ga0070667_1000100768 348
191 3300005548 Ga0070665_100000198 Ga0070665_10000019842 348
192 3300005563 Ga0068855_100435878 Ga0068855_1004358781 348
193 3300005841 Ga0068863_100000560 Ga0068863_10000056018 348
194 3300005844 Ga0068862_100000183 Ga0068862_10000018315 348
195 3300005844 Ga0068862_100012627 Ga0068862_1000126276 348
196 3300009101 Ga0105247_10128018 Ga0105247_101280181 348
197 3300009177 Ga0105248_10046035 Ga0105248_100460352 348
198 3300010375 Ga0105239_10070112 Ga0105239_100701124 348
199 3300025912 Ga0207707_10080873 Ga0207707_100808732 348
200 3300025913 Ga0207695_10005132 Ga0207695_100051329 348
201 3300025917 Ga0207660_10075838 Ga0207660_100758381 348
202 3300025924 Ga0207694_10243483 Ga0207694_102434831 348
203 3300025925 Ga0207650_10000033 Ga0207650_10000033230 348
204 3300025949 Ga0207667_10148910 Ga0207667_101489101 348
205 3300025961 Ga0207712_10000651 Ga0207712_1000065113 348
206 3300025961 Ga0207712_10233491 Ga0207712_102334911 348
207 3300025972 Ga0207668_10000004 Ga0207668_1000000482 348
208 3300028379 Ga0268266_10001373 Ga0268266_1000137317 348
209 3300028380 Ga0268265_10002911 Ga0268265_100029114 348
210 3300028380 Ga0268265_10007932 Ga0268265_100079322 348
211 3300028381 Ga0268264_10137982 Ga0268264_101379822 348
212 3300037312 Ga0395899_0126484 Ga0395899_0126484_609_1658 348
213 3300037466 Ga0395898_0077581 Ga0395898_0077581_51_1100 348
214 3300037471 Ga0395905_0011450 Ga0395905_0011450_6732_7781 348
215 3300037471 Ga0395905_0127372 Ga0395905_0127372_1023_2072 348
216 3300038443 Ga0395901_0244145 Ga0395901_0244145_793_1842 348
217 3300046684 Ga0495669_0012358 Ga0495669_0012358_1880_2974 348
218 3300049581 Ga0501047_0194827 Ga0501047_0194827_659_1720 348
219 3300005327 Ga0070658_10140457 Ga0070658_101404572 349
220 3300005339 Ga0070660_100148034 Ga0070660_1001480342 349
221 3300005548 Ga0070665_100000721 Ga0070665_10000072112 349
222 3300005842 Ga0068858_100114073 Ga0068858_1001140732 349
223 3300006881 Ga0068865_100093309 Ga0068865_1000933092 349
224 3300009093 Ga0105240_10003768 Ga0105240_100037684 349
225 3300009551 Ga0105238_10022337 Ga0105238_100223374 349
226 3300025913 Ga0207695_10001168 Ga0207695_1000116850 349
227 3300025913 Ga0207695_10300926 Ga0207695_103009261 349
228 3300025919 Ga0207657_10012071 Ga0207657_100120712 349
229 3300025931 Ga0207644_10064996 Ga0207644_100649962 349
230 3300025932 Ga0207690_10000031 Ga0207690_1000003199 349
231 3300026035 Ga0207703_10186215 Ga0207703_101862151 349
232 3300028379 Ga0268266_10000003 Ga0268266_100000031440 349
233 3300028379 Ga0268266_10043880 Ga0268266_100438803 349
234 3300028786 Ga0307517_10103730 Ga0307517_101037302 349
235 3300030521 Ga0307511_10029350 Ga0307511_100293501 349
236 3300035692 Ga0373935_0097399 Ga0373935_0097399_616_1665 349
237 3300035695 Ga0373927_0000111 Ga0373927_0000111_22066_23115 349
238 3300037068 Ga0373925_0000209 Ga0373925_0000209_40985_42034 349
239 3300044693 Ga0466961_0173231 Ga0466961_0173231_131_1180 349
240 3300046684 Ga0495669_0127996 Ga0495669_0127996_59_1108 349
241 3300048918 Ga0496115_0004365 Ga0496115_0004365_2872_3921 349
242 3300049570 Ga0501033_0024133 Ga0501033_0024133_1880_2929 349
243 3300049823 Ga0501044_0041180 Ga0501044_0041180_2834_3883 349
244 3300053119 Ga0500595_006517 Ga0500595_006517_513_1562 349
245 3300003215 JGI25153J46596_10045554 JGI25153J46596_100455541 350
246 3300003791 Ga0055530_10000313 Ga0055530_100003136 350
247 3300003794 Ga0055531_10002388 Ga0055531_100023887 350
248 3300005262 Ga0065165_1005530 Ga0065165_10055304 350
249 3300025250 Ga0209026_1000749 Ga0209026_10007494 350
250 3300025297 Ga0209758_1001380 Ga0209758_10013804 350
251 3300025298 Ga0209050_1000053 Ga0209050_100005388 350
252 3300025304 Ga0209257_1000419 Ga0209257_100041960 350
253 3300025304 Ga0209257_1004976 Ga0209257_10049764 350
254 3300037312 Ga0395899_0017271 Ga0395899_0017271_3048_4100 350
255 3300037418 Ga0395900_0000002 Ga0395900_0000002_322933_323985 350
256 3300038443 Ga0395901_0001134 Ga0395901_0001134_22997_24049 350
257 3300048915 Ga0496112_0137386 Ga0496112_0137386_320_1372 350
258 3300049581 Ga0501047_0002245 Ga0501047_0002245_2680_3735 350
259 3300053108 Ga0500562_001555 Ga0500562_001555_1884_3017 350

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01208

URO-D

Uroporphyrinogen decarboxylase (URO-D)

34

372

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
1r3q-assembly1.cif.gz_A uroporphyrinogen decarboxylase in complex with coproporphyrinogen-i 0.9415 4 339
1r3s-assembly1.cif.gz_A uroporphyrinogen decarboxylase single mutant d86g in complex with coproporphyrinogen-i 0.9414 4 339
1r3v-assembly1.cif.gz_A-2 uroporphyrinogen decarboxylase single mutant d86e in complex with coproporphyrinogen-i 0.9399 4 339
3gw0-assembly1.cif.gz_A-2 urod mutant g318r 0.9379 4 339
1r3w-assembly1.cif.gz_A-2 uroporphyrinogen decarboxylase y164f mutant in complex with coproporphyrinogen-iii 0.9369 4 339
ID Description Score Start End Superfamily
1r3sA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.9414 4 339 3.20.20.210
2ejaB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.9331 4 343 3.20.20.210
2ejaB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.9251 4 343 3.20.20.210
af_C6TEE8_35_387_3.20.20.210 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.9231 1 342 3.20.20.210
af_P32347_4_362_3.20.20.210 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.9081 5 342 3.20.20.210
ID Description Score Start End GO Terms
AF-A0A519PJJ2-F1-model_v4 Uroporphyrinogen decarboxylase (EC 4.1.1.37) 0.9914 1 342 GO:0004853
GO:0005829
GO:0019353
AF-A0A519PJJ2-F1-model_v4 Uroporphyrinogen decarboxylase (EC 4.1.1.37) 0.9885 1 342 GO:0004853
GO:0005829
GO:0019353
AF-A0A258D2A8-F1-model_v4 Uroporphyrinogen decarboxylase 0.982 1 344 GO:0004853
GO:0005829
GO:0019353
AF-A0A358J0B3-F1-model_v4 Uroporphyrinogen decarboxylase 0.9762 4 134 GO:0004853
GO:0005829
GO:0019353
AF-K5YVB4-F1-model_v4 Uroporphyrinogen decarboxylase (UPD) (URO-D) (EC 4.1.1.37) 0.9743 7 339 GO:0004853
GO:0005829
GO:0019353

Feature Viewer

pLDDT pTM Quality
93.14 0.92 High
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Predicted Structure (AlphaFold2)

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