F368809

General Info

Members Datasets Scaffolds Average Seq Length
259 167 519 154

Family's Representative Sequence

Representative Sequence 3300013104|Ga0157370_10047514|Ga0157370_100475143
Length 154
Sequence MEKQTLDQTDLEILKLLQQNAQLTNKEIGNQLHKSTATIHERIRQLKEAGYIKKIVAILDRKKVNRNLIAFSHVLLHNHAAETLKNFQKEVTRFPEVMECFQMTGTFDFILRVATVDMDAYHTFYSNLAALPNISTVQSFFVLSETKSDTAYPL

Samples

Sample ID Description Type Environment
1 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
5 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
6 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
7 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
8 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
9 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
10 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
11 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
12 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
13 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
14 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
15 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
16 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
17 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
26 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
27 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
30 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
34 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
35 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
36 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
37 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
42 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
43 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
44 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
45 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
46 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
47 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
48 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
49 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
50 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
52 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
53 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
54 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
55 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
56 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
58 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
59 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
61 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
70 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
71 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
72 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
73 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
74 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
75 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
76 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
77 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
78 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
79 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
80 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
81 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
82 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
83 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
84 3300041441 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_1 MetaG Metagenome Rhizoplane
85 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
86 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
87 3300041462 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG Metagenome Rhizoplane
88 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
89 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
90 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
91 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
92 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
93 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
94 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
95 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
96 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
97 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
98 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
99 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
100 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
101 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
102 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
103 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
104 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
105 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
106 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
107 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
108 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
109 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
110 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
111 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
112 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
113 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
114 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
115 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
116 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
117 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
118 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
119 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
120 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
121 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
122 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
123 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
124 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
125 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
126 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
127 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
128 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
129 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
130 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
131 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
132 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
133 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
134 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
135 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
136 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
137 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
138 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049656 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought Metagenome Rhizosphere
141 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
142 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
143 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
144 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
146 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
147 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
148 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
149 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
150 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
151 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
152 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
153 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
154 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
155 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
156 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
157 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
158 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
159 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
160 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
161 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
162 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
163 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
164 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
165 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
166 2738543023 Pedobacter sp. OK628 Isolate Unclassified
167 2914759650 Rhizosphaericola mali Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.23
Metatranscriptomes 0
Isolates 0.77

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.53
Nodule 0
Rhizoplane 1.54
Rhizosphere 70.66
Stem 0
Stem Tuber 0
Unclassified 12.36

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157370_10047514 3300013104 Bacteria 4114
2 SwRhRL2b_contig_2719742 2162886007 Bacteria 2042
3 JGI24740J21852_10017652 3300001979 Bacteria 2546
4 JGI25162J39368_1000173 3300002737 Bacteria 69607
5 JGI25154J39366_1005793 3300002738 Bacteria 1909
6 JGI25152J39213_1001542 3300002773 Bacteria 9782
7 JGI25150J39212_1000229 3300002774 Bacteria 30305
8 JGI25151J46595_10000638 3300003187 Bacteria 30172
9 JGI25153J46596_10000385 3300003215 Bacteria 30172
10 rootH1_10033719 3300003316 Bacteria 3762
11 rootH1_10033719 3300003323 Bacteria 3802
12 rootL2_10053060 3300003322 Bacteria 3683
13 rootL2_10120140 3300003322 Bacteria 7893
14 rootH1_10365334 3300003323 Unclassified 1613
15 Ga0055536_1000007 3300003781 Bacteria 345133
16 Ga0055530_10001141 3300003791 Bacteria 20680
17 Ga0065165_1008767 3300005262 Bacteria 4661
18 Ga0065714_10125538 3300005288 Bacteria 1300
19 Ga0065714_10128201 3300005288 Bacteria 1257
20 Ga0065714_10185728 3300005288 Bacteria 946
21 Ga0065714_10344031 3300005288 Unclassified 642
22 Ga0065704_10001030 3300005289 Bacteria 14589
23 Ga0065704_10090002 3300005289 Bacteria 2809
24 Ga0065704_10129322 3300005289 Unclassified 1650
25 Ga0070663_100017301 3300005455 Unclassified 4703
26 Ga0070665_101764409 3300005548 Bacteria 626
27 Ga0068855_100152639 3300005563 Bacteria 2626
28 Ga0068852_100683213 3300005616 Unclassified 1036
29 Ga0068858_101742125 3300005842 Bacteria 615
30 Ga0068860_100000138 3300005843 Bacteria 119368
31 Ga0068862_100326667 3300005844 Bacteria 1417
32 Ga0075366_10188183 3300006195 Unclassified 1254
33 Ga0075366_10314855 3300006195 Bacteria 958
34 Ga0075435_100731475 3300007076 Unclassified 860
35 Ga0105244_10000043 3300009036 Bacteria 150556
36 Ga0105240_10000054 3300009093 Bacteria 225529
37 Ga0105240_10000424 3300009093 Bacteria 78228
38 Ga0105240_10003673 3300009093 Bacteria 23739
39 Ga0105240_10139375 3300009093 Unclassified 2901
40 Ga0105240_10303215 3300009093 Bacteria 1827
41 Ga0105240_10552472 3300009093 Bacteria 1274
42 Ga0105243_10000004 3300009148 Bacteria 601266
43 Ga0105241_10012682 3300009174 Bacteria 6183
44 Ga0105237_10000087 3300009545 Bacteria 124934
45 Ga0105237_10005672 3300009545 Bacteria 14044
46 Ga0105237_10014174 3300009545 Bacteria 8345
47 Ga0105239_10000038 3300010375 Bacteria 205230
48 Ga0105239_10000717 3300010375 Bacteria 47009
49 Ga0105239_10033148 3300010375 Bacteria 5673
50 Ga0105239_10495442 3300010375 Bacteria 1389
51 Ga0157373_10059539 3300013100 Bacteria 2706
52 Ga0157373_10075370 3300013100 Bacteria 2380
53 Ga0157371_10000051 3300013102 Bacteria 180272
54 Ga0157371_10011800 3300013102 Bacteria 6709
55 Ga0157371_10014331 3300013102 Bacteria 5986
56 Ga0157370_10016255 3300013104 Bacteria 7539
57 Ga0157370_10029577 3300013104 Bacteria 5373
58 Ga0157370_10147710 3300013104 Bacteria 2188
59 Ga0157369_10000005 3300013105 Bacteria 470816
60 Ga0157369_10000007 3300013105 Bacteria 402562
61 Ga0157369_10000221 3300013105 Bacteria 78608
62 Ga0157369_10002353 3300013105 Bacteria 22741
63 Ga0157374_10692462 3300013296 Bacteria 1032
64 Ga0157378_10543386 3300013297 Bacteria 1166
65 Ga0163162_10000054 3300013306 Bacteria 110125
66 Ga0163162_10000246 3300013306 Bacteria 48982
67 Ga0163162_10003447 3300013306 Bacteria 15104
68 Ga0163162_10011256 3300013306 Bacteria 8722
69 Ga0157372_10000011 3300013307 Bacteria 277202
70 Ga0157372_10637828 3300013307 Bacteria 1241
71 Ga0157372_11824210 3300013307 Bacteria 699
72 Ga0157375_10054987 3300013308 Bacteria 3922
73 Ga0157380_11762143 3300014326 Bacteria 678
74 Ga0182008_10000326 3300014497 Bacteria 37611
75 Ga0182008_10000423 3300014497 Bacteria 32646
76 Ga0157376_12001100 3300014969 Bacteria 617
77 Ga0182006_1000233 3300015261 Bacteria 52709
78 Ga0182006_1000375 3300015261 Bacteria 37085
79 Ga0182006_1074169 3300015261 Bacteria 1254
80 Ga0182006_1086357 3300015261 Bacteria 1136
81 Ga0182007_10000007 3300015262 Bacteria 376596
82 Ga0163161_10000097 3300017792 Bacteria 84842
83 Ga0163161_10000130 3300017792 Bacteria 70533
84 Ga0163161_10000153 3300017792 Bacteria 63614
85 Ga0163161_10000246 3300017792 Bacteria 48503
86 Ga0163161_10000681 3300017792 Bacteria 27156
87 Ga0163161_10332726 3300017792 Bacteria 1203
88 Ga0209436_108080 3300025208 Unclassified 2133
89 Ga0207427_106606 3300025231 Bacteria 1450
90 Ga0209437_100299 3300025233 Bacteria 69659
91 Ga0209258_126617 3300025242 Bacteria 561
92 Ga0207425_1000004 3300025245 Bacteria 1092421
93 Ga0209646_1001246 3300025246 Bacteria 7225
94 Ga0209026_1005946 3300025250 Bacteria 3125
95 Ga0209129_1000048 3300025258 Bacteria 270192
96 Ga0209233_1001899 3300025261 Bacteria 8017
97 Ga0209233_1020576 3300025261 Bacteria 1727
98 Ga0209676_1000058 3300025292 Bacteria 345185
99 Ga0209025_1000009 3300025294 Bacteria 1092561
100 Ga0209758_1000010 3300025297 Bacteria 1092782
101 Ga0209050_1000054 3300025298 Bacteria 345186
102 Ga0207426_1028126 3300025302 Unclassified 1866
103 Ga0207654_10036887 3300025911 Bacteria 2734
104 Ga0207695_10000043 3300025913 Bacteria 444585
105 Ga0207695_10000055 3300025913 Bacteria 382776
106 Ga0207695_10000546 3300025913 Bacteria 78237
107 Ga0207695_10166050 3300025913 Bacteria 2136
108 Ga0207695_10247473 3300025913 Bacteria 1682
109 Ga0207695_10923165 3300025913 Bacteria 752
110 Ga0207671_10000096 3300025914 Bacteria 135750
111 Ga0207671_10000584 3300025914 Bacteria 48796
112 Ga0207671_10008715 3300025914 Bacteria 8556
113 Ga0207671_10049330 3300025914 Bacteria 3116
114 Ga0207671_10277951 3300025914 Bacteria 1320
115 Ga0207709_10000010 3300025935 Bacteria 601305
116 Ga0207667_10135623 3300025949 Bacteria 2535
117 Ga0207667_10266121 3300025949 Bacteria 1753
118 Ga0207658_11117362 3300025986 Bacteria 720
119 Ga0207677_11529959 3300026023 Bacteria 617
120 Ga0268264_10000109 3300028381 Bacteria 208477
121 Ga0307513_10237219 3300031456 Unclassified 1632
122 Ga0307509_10040535 3300031507 Bacteria 5065
123 Ga0307405_10000037 3300031731 Bacteria 91045
124 Ga0307407_10000014 3300031903 Bacteria 156064
125 Ga0307409_100017885 3300031995 Bacteria 4742
126 Ga0307416_100000007 3300032002 Bacteria 433284
127 Ga0307414_10000676 3300032004 Bacteria 17495
128 Ga0307414_10000765 3300032004 Bacteria 16475
129 Ga0307414_10110188 3300032004 Bacteria 2093
130 Ga0307507_10000071 3300033179 Bacteria 158391
131 Ga0307510_10001657 3300033180 Bacteria 24689
132 Ga0307510_10010992 3300033180 Bacteria 10762
133 Ga0307510_10301903 3300033180 Bacteria 1063
134 Ga0307510_10319493 3300033180 Bacteria 1010
135 Ga0395899_0000001 3300037312 Bacteria 1750322
136 Ga0395899_0000765 3300037312 Bacteria 31770
137 Ga0395900_0272781 3300037418 Bacteria 1686
138 Ga0395900_0391814 3300037418 Bacteria 1355
139 Ga0395898_0516382 3300037466 Bacteria 1136
140 Ga0395901_0083845 3300038443 Bacteria 3332
141 Ga0395901_0562793 3300038443 Bacteria 1154
142 Ga0439436_0044957 3300041404 Unclassified 1257
143 Ga0439439_0028296 3300041406 Unclassified 1419
144 Ga0451787_433612 3300041441 Bacteria 761
145 Ga0451791_1091617 3300041451 Bacteria 961
146 Ga0451797_0088508 3300041453 Unclassified 561
147 Ga0451806_648764 3300041462 Bacteria 721
148 Ga0451849_1393352 3300041505 Bacteria 1721
149 Ga0451853_0480370 3300041512 Unclassified 986
150 Ga0439457_024607 3300042014 Unclassified 1332
151 Ga0439462_0070972 3300042015 Bacteria 946
152 Ga0466969_0003277 3300044656 Bacteria 8603
153 Ga0466972_0000036 3300044658 Bacteria 146007
154 Ga0466972_0000980 3300044658 Bacteria 13745
155 Ga0466965_0257533 3300044683 Unclassified 937
156 Ga0466966_0000028 3300044684 Bacteria 105667
157 Ga0466964_0276884 3300044706 Unclassified 837
158 Ga0466968_0082205 3300044735 Bacteria 1417
159 Ga0466968_0357494 3300044735 Unclassified 710
160 Ga0466970_0037384 3300044765 Unclassified 2573
161 Ga0466957_0000484 3300044842 Bacteria 19807
162 Ga0466957_0028850 3300044842 Bacteria 3306
163 Ga0466960_0286031 3300044901 Unclassified 925
164 Ga0466959_0000047 3300045049 Bacteria 86901
165 Ga0495629_0261951 3300046459 Unclassified 1188
166 Ga0495638_0039931 3300046460 Bacteria 2976
167 Ga0495638_0228936 3300046460 Bacteria 1035
168 Ga0495650_0000003 3300046471 Bacteria 900730
169 Ga0495585_0000405 3300046492 Bacteria 41777
170 Ga0495585_0005813 3300046492 Bacteria 7736
171 Ga0495607_0347541 3300046501 Unclassified 685
172 Ga0495583_0213268 3300046506 Bacteria 782
173 Ga0495606_0000642 3300046507 Bacteria 54856
174 Ga0495606_0021844 3300046507 Bacteria 4681
175 Ga0495606_0315840 3300046507 Unclassified 841
176 Ga0495610_0000025 3300046512 Bacteria 301208
177 Ga0495610_0001047 3300046512 Bacteria 25418
178 Ga0495610_0002662 3300046512 Bacteria 14731
179 Ga0495616_0032807 3300046513 Bacteria 2710
180 Ga0495616_0068586 3300046513 Bacteria 1721
181 Ga0495628_0038795 3300046516 Unclassified 3811
182 Ga0495628_0369448 3300046516 Bacteria 1052
183 Ga0495637_0012275 3300046520 Bacteria 4101
184 Ga0495637_0084783 3300046520 Unclassified 1258
185 Ga0495637_0100008 3300046520 Bacteria 1134
186 Ga0495648_0000056 3300046524 Bacteria 158489
187 Ga0495648_0000662 3300046524 Bacteria 36792
188 Ga0495609_0001113 3300046538 Bacteria 18658
189 Ga0495609_0011010 3300046538 Bacteria 4320
190 Ga0495645_0851763 3300046543 Bacteria 544
191 Ga0495622_0046549 3300046557 Bacteria 2015
192 Ga0495622_0106012 3300046557 Bacteria 1287
193 Ga0495633_0000592 3300046558 Bacteria 35047
194 Ga0495633_0060411 3300046558 Bacteria 1776
195 Ga0495668_0000153 3300046616 Bacteria 104580
196 Ga0495668_0006040 3300046616 Bacteria 8027
197 Ga0495625_0003575 3300046660 Bacteria 15318
198 Ga0495625_0037219 3300046660 Bacteria 3572
199 Ga0495625_0038912 3300046660 Bacteria 3476
200 Ga0495625_0154373 3300046660 Bacteria 1541
201 Ga0495635_0652541 3300046663 Bacteria 685
202 Ga0495661_0000114 3300046665 Bacteria 95935
203 Ga0495661_0022609 3300046665 Bacteria 4091
204 Ga0495658_0006339 3300046683 Bacteria 5812
205 Ga0495658_0047744 3300046683 Bacteria 2412
206 Ga0495671_0365685 3300046692 Bacteria 691
207 Ga0495649_0000003 3300046694 Bacteria 880817
208 Ga0495600_0094389 3300046809 Bacteria 1951
209 Ga0495687_028372 3300047443 Bacteria 2604
210 Ga0495681_0265649 3300047470 Bacteria 673
211 Ga0495686_0000034 3300047472 Bacteria 325038
212 Ga0495686_0129866 3300047472 Bacteria 1495
213 Ga0495593_0134934 3300047673 Bacteria 1252
214 Ga0495614_0014177 3300048089 Bacteria 3493
215 Ga0496116_0003498 3300048919 Bacteria 15460
216 Ga0496117_0019724 3300048920 Bacteria 5525
217 Ga0496122_0002011 3300048925 Bacteria 30241
218 Ga0496122_0045329 3300048925 Bacteria 3419
219 Ga0496123_0001485 3300048926 Bacteria 32574
220 Ga0496124_0254252 3300048927 Bacteria 1297
221 Ga0496125_0352884 3300048928 Bacteria 878
222 Ga0495678_013746 3300049459 Bacteria 3789
223 Ga0501037_0136677 3300049573 Unclassified 1756
224 Ga0501047_0036912 3300049581 Bacteria 4723
225 Ga0501047_0112046 3300049581 Bacteria 2611
226 Ga0501209_225675 3300049656 Unclassified 581
227 Ga0501219_000217 3300049703 Bacteria 10881
228 Ga0501225_0000499 3300049705 Bacteria 12206
229 Ga0501241_016582 3300049758 Bacteria 1344
230 Ga0501035_0892943 3300049822 Bacteria 704
231 Ga0501044_0024403 3300049823 Bacteria 6419
232 Ga0501284_00083 3300050005 Bacteria 23357
233 nmdc:mga0k408_732416_c1 3300050493 Bacteria 578
234 nmdc:mga0rr50_708362_c1 3300050513 Unclassified 859
235 Ga0500578_0000009 3300053086 Bacteria 219807
236 Ga0500578_0168564 3300053086 Bacteria 1355
237 Ga0500643_027124 3300053087 Bacteria 1784
238 Ga0500646_0026512 3300053090 Unclassified 1572
239 Ga0500646_0113015 3300053090 Bacteria 865
240 Ga0500583_0000056 3300053092 Bacteria 72293
241 Ga0500583_0000370 3300053092 Bacteria 14765
242 Ga0500562_028008 3300053108 Bacteria 1480
243 Ga0500608_022629 3300053122 Bacteria 2915
244 Ga0500608_041525 3300053122 Bacteria 2207
245 Ga0500618_000633 3300053125 Bacteria 21213
246 Ga0500652_004444 3300053131 Bacteria 4345
247 Ga0500658_0080730 3300053134 Unclassified 1390
248 Ga0500658_0351337 3300053134 Bacteria 677
249 Ga0500561_0007323 3300053137 Bacteria 2144
250 Ga0500568_0119325 3300053139 Bacteria 983
251 Ga0500568_0268904 3300053139 Unclassified 620
252 Ga0500588_0024220 3300053146 Bacteria 1673
253 Ga0500616_0012581 3300053153 Bacteria 4949
254 Ga0500619_063078 3300053154 Bacteria 1223
255 Ga0500622_0002142 3300053156 Bacteria 14668
256 Ga0500622_0048783 3300053156 Bacteria 2184
257 Ga0500624_000954 3300053157 Bacteria 5965
258 Ga0500636_0094240 3300053177 Bacteria 1711
259 2739304742 2738543023 Bacteria 6767879
260 2914762206 2914759650 Bacteria 4701441
261 Ga0157370_10047514
262 SwRhRL2b_contig_2719742
263 JGI24740J21852_10017652
264 JGI25162J39368_1000173
265 JGI25154J39366_1005793
266 JGI25152J39213_1001542
267 JGI25150J39212_1000229
268 JGI25151J46595_10000638
269 JGI25153J46596_10000385
270 rootH1_10033719
271 rootL2_10053060
272 rootL2_10120140
273 rootH1_10365334
274 Ga0055536_1000007
275 Ga0055530_10001141
276 Ga0065165_1008767
277 Ga0065714_10125538
278 Ga0065714_10128201
279 Ga0065714_10185728
280 Ga0065714_10344031
281 Ga0065704_10001030
282 Ga0065704_10090002
283 Ga0065704_10129322
284 Ga0070663_100017301
285 Ga0070665_101764409
286 Ga0068855_100152639
287 Ga0068852_100683213
288 Ga0068858_101742125
289 Ga0068860_100000138
290 Ga0068862_100326667
291 Ga0075366_10188183
292 Ga0075366_10314855
293 Ga0075435_100731475
294 Ga0105244_10000043
295 Ga0105240_10000054
296 Ga0105240_10000424
297 Ga0105240_10003673
298 Ga0105240_10139375
299 Ga0105240_10303215
300 Ga0105240_10552472
301 Ga0105243_10000004
302 Ga0105241_10012682
303 Ga0105237_10000087
304 Ga0105237_10005672
305 Ga0105237_10014174
306 Ga0105239_10000038
307 Ga0105239_10000717
308 Ga0105239_10033148
309 Ga0105239_10495442
310 Ga0157373_10059539
311 Ga0157373_10075370
312 Ga0157371_10000051
313 Ga0157371_10011800
314 Ga0157371_10014331
315 Ga0157370_10016255
316 Ga0157370_10029577
317 Ga0157370_10147710
318 Ga0157369_10000005
319 Ga0157369_10000007
320 Ga0157369_10000221
321 Ga0157369_10002353
322 Ga0157374_10692462
323 Ga0157378_10543386
324 Ga0163162_10000054
325 Ga0163162_10000246
326 Ga0163162_10003447
327 Ga0163162_10011256
328 Ga0157372_10000011
329 Ga0157372_10637828
330 Ga0157372_11824210
331 Ga0157375_10054987
332 Ga0157380_11762143
333 Ga0182008_10000326
334 Ga0182008_10000423
335 Ga0157376_12001100
336 Ga0182006_1000233
337 Ga0182006_1000375
338 Ga0182006_1074169
339 Ga0182006_1086357
340 Ga0182007_10000007
341 Ga0163161_10000097
342 Ga0163161_10000130
343 Ga0163161_10000153
344 Ga0163161_10000246
345 Ga0163161_10000681
346 Ga0163161_10332726
347 Ga0209436_108080
348 Ga0207427_106606
349 Ga0209437_100299
350 Ga0209258_126617
351 Ga0207425_1000004
352 Ga0209646_1001246
353 Ga0209026_1005946
354 Ga0209129_1000048
355 Ga0209233_1001899
356 Ga0209233_1020576
357 Ga0209676_1000058
358 Ga0209025_1000009
359 Ga0209758_1000010
360 Ga0209050_1000054
361 Ga0207426_1028126
362 Ga0207654_10036887
363 Ga0207695_10000043
364 Ga0207695_10000055
365 Ga0207695_10000546
366 Ga0207695_10166050
367 Ga0207695_10247473
368 Ga0207695_10923165
369 Ga0207671_10000096
370 Ga0207671_10000584
371 Ga0207671_10008715
372 Ga0207671_10049330
373 Ga0207671_10277951
374 Ga0207709_10000010
375 Ga0207667_10135623
376 Ga0207667_10266121
377 Ga0207658_11117362
378 Ga0207677_11529959
379 Ga0268264_10000109
380 Ga0307513_10237219
381 Ga0307509_10040535
382 Ga0307405_10000037
383 Ga0307407_10000014
384 Ga0307409_100017885
385 Ga0307416_100000007
386 Ga0307414_10000676
387 Ga0307414_10000765
388 Ga0307414_10110188
389 Ga0307507_10000071
390 Ga0307510_10001657
391 Ga0307510_10010992
392 Ga0307510_10301903
393 Ga0307510_10319493
394 Ga0395899_0000001
395 Ga0395899_0000765
396 Ga0395900_0272781
397 Ga0395900_0391814
398 Ga0395898_0516382
399 Ga0395901_0083845
400 Ga0395901_0562793
401 Ga0439436_0044957
402 Ga0439439_0028296
403 Ga0451787_433612
404 Ga0451791_1091617
405 Ga0451797_0088508
406 Ga0451806_648764
407 Ga0451849_1393352
408 Ga0451853_0480370
409 Ga0439457_024607
410 Ga0439462_0070972
411 Ga0466969_0003277
412 Ga0466972_0000036
413 Ga0466972_0000980
414 Ga0466965_0257533
415 Ga0466966_0000028
416 Ga0466964_0276884
417 Ga0466968_0082205
418 Ga0466968_0357494
419 Ga0466970_0037384
420 Ga0466957_0000484
421 Ga0466957_0028850
422 Ga0466960_0286031
423 Ga0466959_0000047
424 Ga0495629_0261951
425 Ga0495638_0039931
426 Ga0495638_0228936
427 Ga0495650_0000003
428 Ga0495585_0000405
429 Ga0495585_0005813
430 Ga0495607_0347541
431 Ga0495583_0213268
432 Ga0495606_0000642
433 Ga0495606_0021844
434 Ga0495606_0315840
435 Ga0495610_0000025
436 Ga0495610_0001047
437 Ga0495610_0002662
438 Ga0495616_0032807
439 Ga0495616_0068586
440 Ga0495628_0038795
441 Ga0495628_0369448
442 Ga0495637_0012275
443 Ga0495637_0084783
444 Ga0495637_0100008
445 Ga0495648_0000056
446 Ga0495648_0000662
447 Ga0495609_0001113
448 Ga0495609_0011010
449 Ga0495645_0851763
450 Ga0495622_0046549
451 Ga0495622_0106012
452 Ga0495633_0000592
453 Ga0495633_0060411
454 Ga0495668_0000153
455 Ga0495668_0006040
456 Ga0495625_0003575
457 Ga0495625_0037219
458 Ga0495625_0038912
459 Ga0495625_0154373
460 Ga0495635_0652541
461 Ga0495661_0000114
462 Ga0495661_0022609
463 Ga0495658_0006339
464 Ga0495658_0047744
465 Ga0495671_0365685
466 Ga0495649_0000003
467 Ga0495600_0094389
468 Ga0495687_028372
469 Ga0495681_0265649
470 Ga0495686_0000034
471 Ga0495686_0129866
472 Ga0495593_0134934
473 Ga0495614_0014177
474 Ga0496116_0003498
475 Ga0496117_0019724
476 Ga0496122_0002011
477 Ga0496122_0045329
478 Ga0496123_0001485
479 Ga0496124_0254252
480 Ga0496125_0352884
481 Ga0495678_013746
482 Ga0501037_0136677
483 Ga0501047_0036912
484 Ga0501047_0112046
485 Ga0501209_225675
486 Ga0501219_000217
487 Ga0501225_0000499
488 Ga0501241_016582
489 Ga0501035_0892943
490 Ga0501044_0024403
491 Ga0501284_00083
492 nmdc:mga0k408_732416_c1
493 nmdc:mga0rr50_708362_c1
494 Ga0500578_0000009
495 Ga0500578_0168564
496 Ga0500643_027124
497 Ga0500646_0026512
498 Ga0500646_0113015
499 Ga0500583_0000056
500 Ga0500583_0000370
501 Ga0500562_028008
502 Ga0500608_022629
503 Ga0500608_041525
504 Ga0500618_000633
505 Ga0500652_004444
506 Ga0500658_0080730
507 Ga0500658_0351337
508 Ga0500561_0007323
509 Ga0500568_0119325
510 Ga0500568_0268904
511 Ga0500588_0024220
512 Ga0500616_0012581
513 Ga0500619_063078
514 Ga0500622_0002142
515 Ga0500622_0048783
516 Ga0500624_000954
517 Ga0500636_0094240
518 2739304742
519 2914762206

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13412

HTH_24

Winged helix-turn-helix DNA-binding

6

53

0.99

PF13404

HTH_AsnC-type

AsnC-type helix-turn-helix domain

6

47

0.98

PF09339

HTH_IclR

IclR helix-turn-helix domain

11

55

0.96

PF01022

HTH_5

Bacterial regulatory protein, arsR family

7

54

0.95

PF01037

AsnC_trans_reg

Lrp/AsnC ligand binding domain

73

145

0.93

PF01047

MarR

MarR family

6

64

0.92

PF08279

HTH_11

HTH domain

9

63

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
2qww-assembly3.cif.gz_F crystal structure of multiple antibiotic-resistance repressor (marr) (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a resolution 0.9536 3 47
5hsm-assembly1.cif.gz_A-2 crystal structure of mycobacterium tuberculosis marr family protein rv2887 0.95 3 47
2qww-assembly2.cif.gz_C crystal structure of multiple antibiotic-resistance repressor (marr) (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a resolution 0.9499 3 47
2qww-assembly1.cif.gz_B crystal structure of multiple antibiotic-resistance repressor (marr) (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a resolution 0.947 3 47
2qww-assembly2.cif.gz_D crystal structure of multiple antibiotic-resistance repressor (marr) (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a resolution 0.946 3 47
ID Description Score Start End Superfamily
2ia0A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9798 2 50 1.10.10.10
2cfxF01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9762 1 49 1.10.10.10
2cfxA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9736 1 49 1.10.10.10
2cfxE01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9731 1 49 1.10.10.10
2cfxH01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9724 1 49 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A351NTB9-F1-model_v4 Lrp/AsnC family transcriptional regulator 0.5671 3 143 GO:0005829
GO:0043200
GO:0043565
AF-A0A017H7Z4-F1-model_v4 PutR, transcriptional activator of PutA and PutP 0.5651 4 141 GO:0005829
GO:0043200
GO:0043565
AF-A0A3A9JND5-F1-model_v4 Lrp/AsnC family transcriptional regulator 0.5633 2 141 GO:0005829
GO:0043200
GO:0043565
AF-A0A7W8GL12-F1-model_v4 deleted 0.5616 3 141
AF-A0A2S5TRW8-F1-model_v4 deleted 0.5604 3 143

Map