F369955

General Info

Members Datasets Scaffolds Average Seq Length
260 224 133 701

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2643221576|2643891799
Length 698
Sequence LVWTDLDRKAVDTARVLAMDSVQKVGNGHPGTAMSLAPAAYLLFQKVMRHDPADPDWAARDRFVLSCGHSSITLYTQLYLGGFGLELDDLKALRTWGSKTPGHPEFGHTAGVEVTTGPLGQGVANAVGMAMAARRERGLLDPGAGDGASIFDHHVYVIASDGDLEEGVSSEASSIAGTQELGNLTVLYDANRISIEGDTHIAFNEDVAKRYEAYGWHVQTVDWTGNDHADLAHYAEDVPALYEAIKAADAVTDKPSLIVLKTVIAWPAPSAQNTEAAHGSALGADEVAATKTVLGFDPEQDFEVPDDVLEHTRSLVQRGKAWAAEWNEQYAAWSTAHPDSAALLHRMKGRALPDGIEDVLPTFEADAKGVATRAASGKVINAIAAIMPELWGGSADLAGSNNTTIKDAKSFLPVDRSVEEWQGDPYQGRVLHFGIREHGMGAIMNGIAVHGGTRVFGGTFLTFSDYMRGSVRVAALMKAPVIYVWTHDSVGLGEDGPTHQPIEHVASLRAMPGLDIVRPADANETAAAWLQVLRNADRPAGLVLSRQNVPTFPRGTEGFATTENVGKGGYVLVDAEGGEPDVVLLATGSEVQLAVTAREQLKADGINARVVSLPCIEWFEAQTQAYRDSVIPPTVKARVSVEAGVKQGWREYVGDAGRIVSIDHYGASADAGTLFREFGFTPEAVAVAARESIAAVRA

Samples

Sample ID Description Type Environment
1 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
2 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
3 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
4 2643221546 Microbacterium sp. Root53 Isolate Unclassified
5 2643221549 Agromyces sp. Root1464 Isolate Unclassified
6 2643221553 Microbacterium sp. Root553 Isolate Unclassified
7 2643221566 Microbacterium sp. Root166 Isolate Unclassified
8 2643221572 Leifsonia sp. Root60 Isolate Unclassified
9 2643221575 Microbacterium sp. Root61 Isolate Unclassified
10 2643221576 Nocardioides sp. Root614 Isolate Unclassified
11 2643221590 Nocardioides sp. Root682 Isolate Unclassified
12 2643221597 Microbacterium sp. Root180 Isolate Unclassified
13 2643221604 Nocardioides sp. Root190 Isolate Unclassified
14 2643221616 Leifsonia sp. Root227 Isolate Unclassified
15 2643221619 Agromyces sp. Root81 Isolate Unclassified
16 2643221630 Microbacterium sp. Root322 Isolate Unclassified
17 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
18 2643221635 Yonghaparkia sp. Root332 Isolate Unclassified
19 2643221649 Leifsonia sp. Root4 Isolate Unclassified
20 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
21 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
22 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
23 2690315906 Arthrobacter sp. OY3WO11 Isolate Unclassified
24 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
25 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
26 2738541305 Nocardioides sp. CF167 Isolate Unclassified
27 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
28 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
29 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
30 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
31 2773857759 Microbacterium sp. 1294 Isolate Unclassified
32 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
33 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
34 2808606357 Arthrobacter sp. SLBN-122 Isolate Unclassified
35 2808606371 Arthrobacter sp. SLBN-53 Isolate Unclassified
36 2808606372 Agromyces sp. 23-23 Isolate Unclassified
37 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
38 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
39 2816332305 Kocuria rhizophila FDAARGOS_302 Isolate Rhizosphere
40 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
41 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
42 2844849076 Arthrobacter cupressi DSM 24664 Isolate Rhizosphere
43 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
44 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
45 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
46 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
47 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
48 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
49 2856741275 Microbispora triticiradicis NEAU-HRDPA2-9 Isolate Unclassified
50 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
51 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
52 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
53 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
54 2857740372 Paenarthrobacter sp. R-74611 Isolate Unclassified
55 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
56 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
57 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
58 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
59 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
60 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
61 2891562705 Microbispora tritici MT50 Isolate Unclassified
62 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
63 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
64 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
65 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
66 2904497146 Arthrobacter sp. 1276 Isolate Rhizosphere
67 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
68 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
69 2904776348 Paenarthrobacter sp. 1092 Isolate Rhizosphere
70 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
71 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
72 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
73 2910809715 Paenarthrobacter sp. CM16 Isolate Unclassified
74 2919034639 Paenarthrobacter nitroguajacolicus 247 Isolate Rhizosphere
75 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
76 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
77 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
78 2919059106 Arthrobacter sp. 1088 Isolate Rhizosphere
79 2919069694 Microbacterium sp. 1154 Isolate Unclassified
80 2919395869 Microbacterium resistens 2980 Isolate Unclassified
81 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
82 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
83 2919538618 Paenarthrobacter nitroguajacolicus 3945 Isolate Unclassified
84 2920879853 Kocuria salina CV6 Isolate Unclassified
85 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
86 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
87 2928153084 Leifsonia sp. 563 Isolate Unclassified
88 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
89 2932426870 Paenarthrobacter sp. 4246 Isolate Rhizosphere
90 2933418574 Jeotgalibacillus campisalis 4120 Isolate Rhizosphere
91 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
92 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
93 2939647034 Arthrobacter sp. 2762 Isolate Rhizosphere
94 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
95 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
96 2939674588 Arthrobacter bambusae 3552 Isolate Rhizosphere
97 2945916053 Arthrobacter ulcerisalmonis W1I2 Isolate Rhizosphere
98 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
99 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
100 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
101 2946059875 Arthrobacter sp. SLBN-112 Isolate Rhizosphere
102 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
103 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
104 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
105 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
106 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
107 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
108 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
109 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
110 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
111 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
112 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
113 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
114 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
115 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
116 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
117 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
118 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
119 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
120 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
121 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
122 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
123 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
124 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
125 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
126 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
127 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
128 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
129 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
130 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
131 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
132 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
133 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
134 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
135 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
136 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
137 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
138 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
139 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
140 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
141 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
142 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
143 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
144 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
145 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
146 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
147 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
148 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
149 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
150 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
151 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
152 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
153 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
154 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
155 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
156 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
157 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
158 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
159 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
160 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
161 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
162 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
163 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
164 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
165 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
166 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
167 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
168 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
169 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
170 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
171 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
172 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
173 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
174 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
175 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
176 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
177 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
178 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
179 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
180 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
181 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
182 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
183 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
184 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
185 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
186 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
187 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
188 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
189 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
190 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
191 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
192 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
193 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
194 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
195 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
196 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
197 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
198 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
199 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
200 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
201 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
202 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
203 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
204 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
205 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
206 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
207 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
208 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
209 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
210 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
211 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
212 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
213 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
214 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
215 8004025490 Arthrobacter wenxiniae AETb3-4 Isolate Rhizosphere
216 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
217 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
218 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
219 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
220 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
221 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
222 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere
223 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere
224 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 50.38
Metatranscriptomes 0.77
Isolates 48.85

Biome Distribution

Category Percentage (%)
Aerial Root 0.77
Bulb 0
Endosphere 13.08
Nodule 0
Rhizoplane 5.77
Rhizosphere 43.46
Stem 0
Stem Tuber 0.38
Unclassified 36.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1001271 3300002738 Bacteria 9400
2 JGI25164J39214_1000465 3300002772 Bacteria 20556
3 JGI25165J46597_1000330 3300003214 Bacteria 56543
4 Ga0006562J51391_1062301 3300003578 Bacteria 6030
5 Ga0006562J51391_1062302 3300003578 Bacteria 4790
6 Ga0055527_1000001 3300003760 Bacteria 850044
7 Ga0055529_1000018 3300003763 Bacteria 344344
8 Ga0070671_100019118 3300005355 Bacteria 5572
9 Ga0070710_10005499 3300005437 Bacteria 6023
10 Ga0075365_10001138 3300006038 Bacteria 11652
11 Ga0075365_10007857 3300006038 Bacteria 6009
12 Ga0075363_100011853 3300006048 Bacteria 4186
13 Ga0075364_10015937 3300006051 Bacteria 4667
14 Ga0075367_10004898 3300006178 Bacteria 6595
15 Ga0075367_10012159 3300006178 Bacteria 4579
16 Ga0075369_10019868 3300006186 Bacteria 2746
17 Ga0075370_10018074 3300006353 Bacteria 3820
18 Ga0105244_10001160 3300009036 Bacteria 21797
19 Ga0105246_10010759 3300011119 Bacteria 5671
20 Ga0157371_10011963 3300013102 Bacteria 6654
21 Ga0157370_10067294 3300013104 Bacteria 3386
22 Ga0157369_10000408 3300013105 Bacteria 57117
23 Ga0163162_10036949 3300013306 Bacteria 4872
24 Ga0157372_10033036 3300013307 Bacteria 5680
25 Ga0209672_100006 3300025228 Bacteria 1004497
26 Ga0209147_100484 3300025229 Bacteria 23911
27 Ga0207427_100052 3300025231 Bacteria 218228
28 Ga0209437_100484 3300025233 Bacteria 29919
29 Ga0209646_1000071 3300025246 Bacteria 228702
30 Ga0209148_1000015 3300025254 Bacteria 850103
31 Ga0209129_1000067 3300025258 Bacteria 219974
32 Ga0209233_1000001 3300025261 Bacteria 2992747
33 Ga0209455_1000013 3300025272 Bacteria 850103
34 Ga0209025_1002233 3300025294 Bacteria 21329
35 Ga0207655_1014387 3300025728 Bacteria 4475
36 Ga0207692_10013986 3300025898 Bacteria 3496
37 Ga0209813_10008525 3300027866 Bacteria 2594
38 Ga0268266_10029886 3300028379 Bacteria 4630
39 Ga0307515_10073905 3300028794 Bacteria 4571
40 Ga0307408_100010735 3300031548 Bacteria 6043
41 Ga0307406_10002718 3300031901 Bacteria 9639
42 Ga0307407_10017282 3300031903 Bacteria 3615
43 Ga0307412_10065482 3300031911 Bacteria 2459
44 Ga0307409_100038742 3300031995 Bacteria 3528
45 Ga0307416_100009604 3300032002 Bacteria 6344
46 Ga0307416_100029262 3300032002 Bacteria 4111
47 Ga0395900_0002028 3300037418 Bacteria 22775
48 Ga0395898_0000131 3300037466 Bacteria 192369
49 Ga0395898_0038622 3300037466 Bacteria 4730
50 Ga0439436_0008027 3300041404 Bacteria 3241
51 Ga0439433_0000699 3300041999 Bacteria 6518
52 Ga0439442_000123 3300042002 Bacteria 19485
53 Ga0439457_001874 3300042014 Bacteria 6214
54 Ga0466965_0000005 3300044683 Bacteria 185168
55 Ga0466965_0005956 3300044683 Bacteria 5509
56 Ga0466965_0026226 3300044683 Bacteria 2824
57 Ga0466970_0000029 3300044765 Bacteria 52034
58 Ga0466957_0022144 3300044842 Bacteria 3747
59 Ga0466960_0002063 3300044901 Bacteria 7470
60 Ga0495590_0000234 3300046457 Bacteria 30439
61 Ga0495650_0001368 3300046471 Bacteria 24092
62 Ga0495642_0021833 3300046528 Bacteria 2520
63 Ga0495656_0028718 3300046615 Bacteria 2233
64 Ga0495626_0020096 3300048091 Bacteria 3333
65 Ga0496100_0021414 3300048903 Bacteria 3892
66 Ga0496101_0011486 3300048904 Bacteria 5878
67 Ga0496101_0016446 3300048904 Bacteria 4997
68 Ga0496103_0003139 3300048906 Bacteria 10164
69 Ga0496104_0057542 3300048907 Bacteria 3678
70 Ga0496107_0007438 3300048910 Bacteria 7550
71 Ga0496107_0035934 3300048910 Bacteria 3553
72 Ga0496108_0027370 3300048911 Bacteria 4707
73 Ga0496110_0026659 3300048913 Bacteria 4948
74 Ga0496111_0022540 3300048914 Bacteria 4411
75 Ga0496112_0030392 3300048915 Bacteria 5227
76 Ga0496113_0005979 3300048916 Bacteria 7657
77 Ga0496113_0030498 3300048916 Bacteria 3904
78 Ga0496114_0032287 3300048917 Bacteria 4307
79 Ga0496115_0012979 3300048918 Bacteria 6285
80 Ga0496116_0009700 3300048919 Bacteria 8181
81 Ga0496117_0001264 3300048920 Bacteria 37571
82 Ga0496117_0002993 3300048920 Bacteria 20350
83 Ga0496117_0020564 3300048920 Bacteria 5375
84 Ga0496118_0004905 3300048921 Bacteria 15547
85 Ga0496118_0007527 3300048921 Bacteria 11507
86 Ga0496118_0060804 3300048921 Bacteria 2803
87 Ga0496119_0001505 3300048922 Bacteria 27872
88 Ga0496119_0026017 3300048922 Bacteria 4069
89 Ga0496120_0000593 3300048923 Bacteria 54794
90 Ga0496122_0000054 3300048925 Bacteria 259135
91 Ga0496122_0000120 3300048925 Bacteria 182539
92 Ga0496122_0021120 3300048925 Bacteria 5843
93 Ga0496123_0000039 3300048926 Bacteria 259107
94 Ga0496123_0000051 3300048926 Bacteria 237095
95 Ga0496124_0000037 3300048927 Bacteria 317430
96 Ga0496124_0020501 3300048927 Bacteria 6105
97 Ga0496124_0062113 3300048927 Bacteria 3127
98 Ga0496124_0075217 3300048927 Bacteria 2790
99 Ga0496125_0005214 3300048928 Bacteria 14583
100 Ga0496125_0005465 3300048928 Bacteria 14112
101 Ga0496126_0001388 3300048929 Bacteria 38310
102 Ga0496126_0003610 3300048929 Bacteria 19352
103 Ga0496126_0013398 3300048929 Bacteria 8342
104 Ga0496126_0019697 3300048929 Bacteria 6639
105 Ga0496126_0037054 3300048929 Bacteria 4554
106 Ga0496126_0069264 3300048929 Bacteria 3148
107 Ga0501033_0022140 3300049570 Bacteria 4795
108 Ga0501034_0003742 3300049571 Bacteria 17185
109 Ga0501034_0004274 3300049571 Bacteria 15928
110 Ga0501034_0007703 3300049571 Bacteria 11458
111 Ga0501034_0032955 3300049571 Bacteria 5260
112 Ga0501046_0010472 3300049580 Bacteria 7961
113 Ga0501047_0021012 3300049581 Bacteria 6270
114 Ga0501070_0000300 3300049586 Bacteria 45950
115 Ga0501070_0000473 3300049586 Bacteria 36519
116 Ga0501070_0038162 3300049586 Bacteria 4008
117 Ga0501070_0045129 3300049586 Bacteria 3666
118 Ga0501073_0000029 3300049589 Bacteria 117147
119 Ga0501074_0071117 3300049590 Bacteria 2501
120 Ga0501035_0056279 3300049822 Bacteria 3509
121 Ga0501044_0006300 3300049823 Bacteria 13114
122 nmdc:mga03n38_18378_c1 3300050490 Bacteria 2759
123 nmdc:mga06z11_3184_c1 3300050494 Bacteria 6336
124 nmdc:mga04h51_15377_c1 3300050495 Bacteria 2204
125 nmdc:mga07m45_12638_c1 3300050496 Bacteria 4465
126 Ga0500635_0000012 3300053080 Bacteria 138781
127 Ga0500562_004908 3300053108 Bacteria 3371
128 Ga0500568_0000014 3300053139 Bacteria 223550
129 Ga0500568_0001140 3300053139 Bacteria 17832
130 Ga0500568_0005214 3300053139 Bacteria 6770
131 Ga0500573_0021317 3300053140 Bacteria 3712
132 Ga0500616_0000125 3300053153 Bacteria 135146
133 Ga0500616_0005665 3300053153 Bacteria 8425

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048929 Ga0496126_0001388 Ga0496126_0001388_23235_25226 644
2 3300049590 Ga0501074_0071117 Ga0501074_0071117_20_1987 651
3 iso_pu_bacteria 2852677369 2852679425 654
4 3300048904 Ga0496101_0011486 Ga0496101_0011486_2768_4753 658
5 3300002772 JGI25164J39214_1000465 JGI25164J39214_10004656 679
6 3300003214 JGI25165J46597_1000330 JGI25165J46597_100033032 679
7 3300025231 Ga0207427_100052 Ga0207427_10005282 679
8 3300025233 Ga0209437_100484 Ga0209437_10048416 679
9 3300025261 Ga0209233_1000001 Ga0209233_10000012030 679
10 iso_pu_bacteria 2821268502 2821269802 681
11 3300005437 Ga0070710_10005499 Ga0070710_100054993 682
12 3300025898 Ga0207692_10013986 Ga0207692_100139862 682
13 3300048916 Ga0496113_0030498 Ga0496113_0030498_503_2575 682
14 3300049571 Ga0501034_0004274 Ga0501034_0004274_5605_7665 682
15 3300013105 Ga0157369_10000408 Ga0157369_1000040846 683
16 iso_pu_bacteria 2945916053 2945918963 683
17 3300048929 Ga0496126_0037054 Ga0496126_0037054_308_2401 685
18 iso_pu_bacteria 8055037949 8055038548 685
19 iso_pu_bacteria 2891554331 2891562359 686
20 3300028794 Ga0307515_10073905 Ga0307515_100739052 687
21 3300046615 Ga0495656_0028718 Ga0495656_0028718_114_2201 687
22 3300049586 Ga0501070_0038162 Ga0501070_0038162_246_2321 687
23 3300049589 Ga0501073_0000029 Ga0501073_0000029_95755_97830 687
24 3300053108 Ga0500562_004908 Ga0500562_004908_726_2801 687
25 3300053153 Ga0500616_0005665 Ga0500616_0005665_2446_4518 687
26 iso_pu_bacteria 2643221576 2643891799 687
27 iso_pu_bacteria 2643221590 2643960848 687
28 iso_pu_bacteria 2643221604 2644035634 687
29 iso_pu_bacteria 2738541305 2738868257 687
30 iso_pu_bacteria 2856741275 2856745813 687
31 iso_pu_bacteria 2870628048 2870630135 687
32 iso_pu_bacteria 2891562705 2891565634 687
33 iso_pu_bacteria 2995726249 2995728093 687
34 3300053139 Ga0500568_0000014 Ga0500568_0000014_69131_71257 689
35 iso_pu_bacteria 2675903060 2676493192 689
36 iso_pu_bacteria 2773857759 2774384679 689
37 iso_pu_bacteria 2808606306 2808631398 689
38 iso_pu_bacteria 2884693830 2884700580 689
39 iso_pu_bacteria 2895427314 2895430756 689
40 iso_pu_bacteria 2895442618 2895450199 689
41 iso_pu_bacteria 2977251589 2977253740 689
42 iso_pu_bacteria 8055034563 8055035898 689
43 iso_pu_bacteria 2585428094 2587862831 690
44 iso_pu_bacteria 2643221549 2643767768 690
45 iso_pu_bacteria 2643221572 2643875162 690
46 iso_pu_bacteria 2643221616 2644096108 690
47 iso_pu_bacteria 2643221619 2644111143 690
48 iso_pu_bacteria 2643221632 2644183540 690
49 iso_pu_bacteria 2643221635 2644199308 690
50 iso_pu_bacteria 2643221649 2644279729 690
51 iso_pu_bacteria 2643221669 2644382218 690
52 iso_pu_bacteria 2721755702 2723642034 690
53 iso_pu_bacteria 2751185788 2753302154 690
54 iso_pu_bacteria 2808606372 2808902012 690
55 iso_pu_bacteria 2844852863 2844855465 690
56 iso_pu_bacteria 2857729791 2857732581 690
57 iso_pu_bacteria 2862993130 2862996276 690
58 iso_pu_bacteria 2870622029 2870623517 690
59 iso_pu_bacteria 2884763398 2884765474 690
60 iso_pu_bacteria 2895660088 2895661289 690
61 iso_pu_bacteria 2904430863 2904432661 690
62 iso_pu_bacteria 2904501621 2904503108 690
63 iso_pu_bacteria 2908674828 2908675715 690
64 iso_pu_bacteria 2909074476 2909074767 690
65 iso_pu_bacteria 2919039151 2919040773 690
66 iso_pu_bacteria 2919042368 2919043838 690
67 iso_pu_bacteria 2919055335 2919058205 690
68 iso_pu_bacteria 2919443155 2919446213 690
69 iso_pu_bacteria 2919523602 2919524579 690
70 iso_pu_bacteria 2928104781 2928107884 690
71 iso_pu_bacteria 2928121344 2928122923 690
72 iso_pu_bacteria 2928153084 2928156498 690
73 iso_pu_bacteria 2928500415 2928500699 690
74 iso_pu_bacteria 2935409751 2935411385 690
75 iso_pu_bacteria 2939657138 2939657950 690
76 iso_pu_bacteria 2939660829 2939661023 690
77 iso_pu_bacteria 2946033335 2946033629 690
78 iso_pu_bacteria 2964326757 2964329685 690
79 iso_pu_bacteria 2984551494 2984554293 690
80 iso_pu_bacteria 8046352972 8046356434 690
81 iso_pu_bacteria 8057345674 8057348692 690
82 iso_pu_bacteria 2757320536 2758226338 691
83 iso_pu_bacteria 2816332305 2817509123 691
84 iso_pu_bacteria 2852643534 2852645434 691
85 iso_pu_bacteria 2857737099 2857737389 691
86 iso_pu_bacteria 2643221575 2643885178 692
87 iso_pu_bacteria 2857733635 2857735636 692
88 iso_pu_bacteria 2977264416 2977266380 692
89 iso_pu_bacteria 3002998708 3003009419 692
90 iso_pu_bacteria 8002811521 8002812585 692
91 iso_pu_bacteria 8016254467 8016257773 692
92 3300009036 Ga0105244_10001160 Ga0105244_100011606 693
93 3300037466 Ga0395898_0038622 Ga0395898_0038622_2492_4609 693
94 3300041404 Ga0439436_0008027 Ga0439436_0008027_1089_3206 693
95 3300041999 Ga0439433_0000699 Ga0439433_0000699_3441_5558 693
96 3300042002 Ga0439442_000123 Ga0439442_000123_14125_16242 693
97 3300042014 Ga0439457_001874 Ga0439457_001874_1065_3182 693
98 3300046528 Ga0495642_0021833 Ga0495642_0021833_13_2130 693
99 iso_pu_bacteria 2690315906 2691513826 693
100 iso_pu_bacteria 2808606357 2808831098 693
101 iso_pu_bacteria 2808606371 2808896406 693
102 iso_pu_bacteria 2811994872 2812322897 693
103 iso_pu_bacteria 2844849076 2844852697 693
104 iso_pu_bacteria 2857740372 2857742151 693
105 iso_pu_bacteria 2904497146 2904498259 693
106 iso_pu_bacteria 2904776348 2904777620 693
107 iso_pu_bacteria 2910809715 2910811833 693
108 iso_pu_bacteria 2919034639 2919034991 693
109 iso_pu_bacteria 2919059106 2919059813 693
110 iso_pu_bacteria 2919538618 2919540448 693
111 iso_pu_bacteria 2932426870 2932428305 693
112 iso_pu_bacteria 2933418574 2933421140 693
113 iso_pu_bacteria 2939647034 2939648708 693
114 iso_pu_bacteria 2939674588 2939675238 693
115 iso_pu_bacteria 2946059875 2946062820 693
116 iso_pu_bacteria 8004025490 8004029444 693
117 3300003760 Ga0055527_1000001 Ga0055527_1000001318 694
118 3300003763 Ga0055529_1000018 Ga0055529_1000018178 694
119 3300025228 Ga0209672_100006 Ga0209672_100006658 694
120 3300025229 Ga0209147_100484 Ga0209147_10048418 694
121 3300025254 Ga0209148_1000015 Ga0209148_1000015502 694
122 3300025272 Ga0209455_1000013 Ga0209455_1000013502 694
123 3300037418 Ga0395900_0002028 Ga0395900_0002028_17922_20015 694
124 3300037466 Ga0395898_0000131 Ga0395898_0000131_98642_100735 694
125 3300044683 Ga0466965_0026226 Ga0466965_0026226_387_2480 694
126 3300044765 Ga0466970_0000029 Ga0466970_0000029_3583_5685 694
127 3300044842 Ga0466957_0022144 Ga0466957_0022144_423_2525 694
128 3300044901 Ga0466960_0002063 Ga0466960_0002063_1897_3990 694
129 3300048907 Ga0496104_0057542 Ga0496104_0057542_1219_3312 694
130 3300048910 Ga0496107_0007438 Ga0496107_0007438_3412_5505 694
131 3300048927 Ga0496124_0062113 Ga0496124_0062113_133_2226 694
132 3300049570 Ga0501033_0022140 Ga0501033_0022140_1440_3533 694
133 3300049571 Ga0501034_0032955 Ga0501034_0032955_1474_3567 694
134 3300049580 Ga0501046_0010472 Ga0501046_0010472_5034_7127 694
135 3300049586 Ga0501070_0000300 Ga0501070_0000300_33806_35899 694
136 3300049586 Ga0501070_0045129 Ga0501070_0045129_1111_3204 694
137 3300049823 Ga0501044_0006300 Ga0501044_0006300_2250_4343 694
138 3300053080 Ga0500635_0000012 Ga0500635_0000012_12618_14711 694
139 3300053140 Ga0500573_0021317 Ga0500573_0021317_379_2472 694
140 iso_pu_bacteria 2643221546 2643752722 694
141 iso_pu_bacteria 2643221566 2643848133 694
142 iso_pu_bacteria 2643221597 2643995967 694
143 iso_pu_bacteria 2747842429 2747954287 694
144 iso_pu_bacteria 2773857758 2774380729 694
145 iso_pu_bacteria 2773857763 2774399767 694
146 iso_pu_bacteria 2808606447 2809227207 694
147 iso_pu_bacteria 2833709550 2833710725 694
148 iso_pu_bacteria 2852632344 2852633412 694
149 iso_pu_bacteria 2852663356 2852665404 694
150 iso_pu_bacteria 2857723135 2857724029 694
151 iso_pu_bacteria 2904509784 2904512878 694
152 iso_pu_bacteria 2908678064 2908681155 694
153 iso_pu_bacteria 2919069694 2919072967 694
154 iso_pu_bacteria 2919395869 2919398770 694
155 iso_pu_bacteria 2977228692 2977231130 694
156 iso_pu_bacteria 2977236895 2977239923 694
157 iso_pu_bacteria 2984542743 2984545805 694
158 iso_pu_bacteria 8004212874 8004214097 694
159 3300005355 Ga0070671_100019118 Ga0070671_1000191182 695
160 3300013102 Ga0157371_10011963 Ga0157371_100119633 695
161 3300025728 Ga0207655_1014387 Ga0207655_10143872 695
162 3300031548 Ga0307408_100010735 Ga0307408_1000107353 695
163 3300031903 Ga0307407_10017282 Ga0307407_100172822 695
164 3300031911 Ga0307412_10065482 Ga0307412_100654822 695
165 3300031995 Ga0307409_100038742 Ga0307409_1000387422 695
166 3300032002 Ga0307416_100029262 Ga0307416_1000292622 695
167 3300044683 Ga0466965_0000005 Ga0466965_0000005_158136_160235 695
168 3300046457 Ga0495590_0000234 Ga0495590_0000234_13071_15170 695
169 3300046471 Ga0495650_0001368 Ga0495650_0001368_5592_7706 695
170 3300048922 Ga0496119_0001505 Ga0496119_0001505_25439_27541 695
171 3300048923 Ga0496120_0000593 Ga0496120_0000593_22616_24712 695
172 3300048929 Ga0496126_0069264 Ga0496126_0069264_52_2139 695
173 3300053139 Ga0500568_0005214 Ga0500568_0005214_1084_3183 695
174 3300053153 Ga0500616_0000125 Ga0500616_0000125_60332_62431 695
175 iso_pu_bacteria 2920879853 2920882584 695
176 3300048091 Ga0495626_0020096 Ga0495626_0020096_881_3022 696
177 3300048903 Ga0496100_0021414 Ga0496100_0021414_916_3165 696
178 3300048919 Ga0496116_0009700 Ga0496116_0009700_4931_7030 696
179 3300048920 Ga0496117_0020564 Ga0496117_0020564_1431_3572 696
180 3300048921 Ga0496118_0004905 Ga0496118_0004905_6323_8464 696
181 3300048921 Ga0496118_0007527 Ga0496118_0007527_7848_9947 696
182 3300048922 Ga0496119_0026017 Ga0496119_0026017_1380_3521 696
183 3300048925 Ga0496122_0000054 Ga0496122_0000054_250210_252309 696
184 3300048926 Ga0496123_0000039 Ga0496123_0000039_250210_252309 696
185 3300048927 Ga0496124_0000037 Ga0496124_0000037_271899_274040 696
186 3300048927 Ga0496124_0020501 Ga0496124_0020501_3738_5837 696
187 3300048928 Ga0496125_0005465 Ga0496125_0005465_6978_9077 696
188 3300048929 Ga0496126_0003610 Ga0496126_0003610_1893_3992 696
189 3300049571 Ga0501034_0003742 Ga0501034_0003742_7951_10164 696
190 3300049571 Ga0501034_0007703 Ga0501034_0007703_1191_3308 696
191 3300049581 Ga0501047_0021012 Ga0501047_0021012_412_2625 696
192 3300049822 Ga0501035_0056279 Ga0501035_0056279_1255_3468 696
193 iso_pu_bacteria 2643221542 2643733522 696
194 iso_pu_bacteria 2643221630 2644170097 696
195 iso_pu_bacteria 2852646457 2852647476 696
196 iso_pu_bacteria 2945968032 2945971993 696
197 iso_pu_bacteria 2946080515 2946080790 696
198 iso_pu_bacteria 2966921586 2966922758 696
199 iso_pu_bacteria 2966924647 2966924820 696
200 iso_pu_bacteria 8004182704 8004185026 696
201 iso_pu_bacteria 8056037122 8056037544 696
202 3300011119 Ga0105246_10010759 Ga0105246_100107593 697
203 3300025258 Ga0209129_1000067 Ga0209129_100006787 697
204 3300025294 Ga0209025_1002233 Ga0209025_10022337 697
205 3300049586 Ga0501070_0000473 Ga0501070_0000473_6852_9137 697
206 3300053139 Ga0500568_0001140 Ga0500568_0001140_10040_12238 697
207 iso_pu_bacteria 2537561592 2537898218 697
208 iso_pu_bacteria 2939598168 2939601337 697
209 iso_pu_bacteria 2974294766 2974296941 697
210 iso_pu_bacteria 2974324384 2974326827 697
211 iso_pu_bacteria 8004021418 8004022767 697
212 3300003578 Ga0006562J51391_1062301 Ga0006562J51391_10623012 698
213 3300003578 Ga0006562J51391_1062302 Ga0006562J51391_10623023 698
214 3300006038 Ga0075365_10001138 Ga0075365_100011389 698
215 3300006038 Ga0075365_10007857 Ga0075365_100078572 698
216 3300006048 Ga0075363_100011853 Ga0075363_1000118532 698
217 3300006051 Ga0075364_10015937 Ga0075364_100159374 698
218 3300006178 Ga0075367_10004898 Ga0075367_100048985 698
219 3300006178 Ga0075367_10012159 Ga0075367_100121593 698
220 3300006186 Ga0075369_10019868 Ga0075369_100198682 698
221 3300006353 Ga0075370_10018074 Ga0075370_100180742 698
222 3300013306 Ga0163162_10036949 Ga0163162_100369493 698
223 3300013307 Ga0157372_10033036 Ga0157372_100330363 698
224 3300027866 Ga0209813_10008525 Ga0209813_100085252 698
225 3300028379 Ga0268266_10029886 Ga0268266_100298863 698
226 3300032002 Ga0307416_100009604 Ga0307416_1000096042 698
227 3300044683 Ga0466965_0005956 Ga0466965_0005956_1425_3542 698
228 3300048904 Ga0496101_0016446 Ga0496101_0016446_1019_3127 698
229 3300048906 Ga0496103_0003139 Ga0496103_0003139_5500_7608 698
230 3300048910 Ga0496107_0035934 Ga0496107_0035934_760_2868 698
231 3300048911 Ga0496108_0027370 Ga0496108_0027370_1476_3584 698
232 3300048913 Ga0496110_0026659 Ga0496110_0026659_401_2509 698
233 3300048914 Ga0496111_0022540 Ga0496111_0022540_317_2425 698
234 3300048915 Ga0496112_0030392 Ga0496112_0030392_1245_3353 698
235 3300048916 Ga0496113_0005979 Ga0496113_0005979_1998_4106 698
236 3300048917 Ga0496114_0032287 Ga0496114_0032287_1181_3289 698
237 3300048918 Ga0496115_0012979 Ga0496115_0012979_2115_4223 698
238 3300050490 nmdc:mga03n38_18378_c1 nmdc:mga03n38_18378_c1_189_2297 698
239 3300050494 nmdc:mga06z11_3184_c1 nmdc:mga06z11_3184_c1_348_2444 698
240 3300050495 nmdc:mga04h51_15377_c1 nmdc:mga04h51_15377_c1_23_2131 698
241 3300050496 nmdc:mga07m45_12638_c1 nmdc:mga07m45_12638_c1_1274_3370 698
242 3300002738 JGI25154J39366_1001271 JGI25154J39366_10012715 700
243 3300013104 Ga0157370_10067294 Ga0157370_100672942 700
244 3300025246 Ga0209646_1000071 Ga0209646_100007139 700
245 3300031901 Ga0307406_10002718 Ga0307406_100027186 700
246 3300048920 Ga0496117_0001264 Ga0496117_0001264_16938_19109 700
247 3300048920 Ga0496117_0002993 Ga0496117_0002993_18207_20324 700
248 3300048921 Ga0496118_0060804 Ga0496118_0060804_424_2595 700
249 3300048925 Ga0496122_0000120 Ga0496122_0000120_78395_80566 700
250 3300048925 Ga0496122_0021120 Ga0496122_0021120_278_2395 700
251 3300048926 Ga0496123_0000051 Ga0496123_0000051_108290_110461 700
252 3300048927 Ga0496124_0075217 Ga0496124_0075217_169_2340 700
253 3300048928 Ga0496125_0005214 Ga0496125_0005214_4845_6962 700
254 3300048929 Ga0496126_0013398 Ga0496126_0013398_3166_5283 700
255 3300048929 Ga0496126_0019697 Ga0496126_0019697_3685_5856 700
256 iso_pu_bacteria 2643221553 2643785985 700
257 iso_pu_bacteria 2643221724 2644680400 700
258 iso_pu_bacteria 2728369380 2730229854 700
259 iso_pu_bacteria 2946041624 2946044364 700
260 iso_pu_bacteria 8045830549 8045830950 700

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22613

Transketolase_C_1

Transketolase-like TK C-terminal domain

568

681

0.99

PF02779

Transket_pyr

Transketolase, pyrimidine binding domain

368

551

0.98

PF00456

Transketolase_N

Transketolase, thiamine diphosphate binding domain

6

353

0.93

PF02780

Transketolase_C

Transketolase, C-terminal domain

569

685

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3rim-assembly2.cif.gz_D crystal structure of mycobacterium tuberculosis transketolase (rv1449c) 0.9707 8 697
7wrr-assembly2.cif.gz_D x-ray structure of thermus thermophilus hb8 transketorase in complex with tpp and mes 0.9628 10 693
1ay0-assembly1.cif.gz_B identification of catalytically important residues in yeast transketolase 0.9619 7 697
4c7v-assembly1.cif.gz_A apo transketolase from lactobacillus salivarius at 2.2a resolution 0.9614 7 693
1ngs-assembly1.cif.gz_B complex of transketolase with thiamin diphosphate, ca2+ and acceptor substrate erythrose-4-phosphate 0.9612 7 697
ID Description Score Start End Superfamily
3rimD01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9774 8 347 3.40.50.970
af_Q4CW17_401_534_3.40.50.920 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9705 571 700 3.40.50.920
af_A0A0R4J2U8_604_731_3.40.50.920 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9664 570 695 3.40.50.920
2e6kB03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9587 571 691 3.40.50.920
af_P33315_544_681_3.40.50.920 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9583 570 697 3.40.50.920
ID Description Score Start End GO Terms
AF-A0A7G6Z7V2-F1-model_v4 Transketolase (EC 2.2.1.1) 0.9883 3 698 GO:0000287
GO:0004802
GO:0005829
GO:0006098
AF-A0A286H8T5-F1-model_v4 Transketolase (EC 2.2.1.1) 0.9877 1 698 GO:0000287
GO:0004802
GO:0005829
GO:0006098
AF-A0A7K1EKI0-F1-model_v4 deleted 0.9859 6 554
AF-A0A1H9DTS0-F1-model_v4 Transketolase, C-terminal domain 0.9857 576 692 GO:0004802
GO:0005829
GO:0006098
AF-A0A259S9A8-F1-model_v4 Transketolase 0.9853 3 496 GO:0000287
GO:0004802
GO:0005829
GO:0006098

Feature Viewer

pLDDT pTM Quality
89.95 0.92 High
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Predicted Structure (AlphaFold2)

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