F371550

General Info

Members Datasets Scaffolds Average Seq Length
263 184 224 414

Family's Representative Sequence

Representative Sequence 3300002075|JGI24738J21930_10003399|JGI24738J21930_100033992
Length 446
Sequence MSQSGPPDELSAAQETDEKTPELELLTLRDGLPDVVETDTQLAAVVHDLAGGTGPVAIDAERASGYRYSARAYLIQLRREGSTTWLVDPTAFDDLTPLQEVLSGDEWILHAASQDLPCLREVGLEPTALFDTELAARLLGYPRVGLASLVEQLCGLRMRKEHSAADWSKRPLPSSWLEYAALDVEVLVEIRDRLARELVESGKDAWAEQEFAHVMAQRPVPRTDPWRRTSGMHKARGRRAVAAVRELWLTRDELAARRDVTPGRIIPDSAIVVAASALPTERSALLGLKGFHGRGAERYADRWIAAILTARELPESELPPVALRADGPPPPRAWAERDPVAAARLTAARAALAALSEERSVPVENMLTPDVVRRVLWSPPDPRQPAELAEAVATQLRDHGARDWQVELVGPVLVDSILHPAPAPDLPPEPSPLTDDLPEAEAPGVG

Samples

Sample ID Description Type Environment
1 2643221546 Microbacterium sp. Root53 Isolate Unclassified
2 2643221553 Microbacterium sp. Root553 Isolate Unclassified
3 2643221597 Microbacterium sp. Root180 Isolate Unclassified
4 2643221615 Nocardioides sp. Root224 Isolate Unclassified
5 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
6 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
7 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
8 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
9 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
10 2799112218 Motilibacter rhizosphaerae DSM 45622 Isolate Rhizosphere
11 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
12 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
13 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
14 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
15 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
16 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
17 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
18 2919069694 Microbacterium sp. 1154 Isolate Unclassified
19 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
20 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
21 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
22 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
23 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
24 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
25 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
26 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
27 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
28 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
29 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
30 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
31 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
32 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
33 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
34 3001119090 Lolliginicoccus lacisalsi G463 Isolate Rhizosphere
35 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
36 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
37 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
38 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
39 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
40 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
41 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
42 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
43 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
44 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
45 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
46 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
47 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
48 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
49 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
50 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
51 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
52 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
53 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
54 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
55 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
56 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
57 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
58 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
59 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
60 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
61 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
62 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
63 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
64 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
65 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
66 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
67 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
68 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
69 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
70 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
71 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
72 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
73 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
74 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
75 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
76 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
77 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
78 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
79 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
80 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
81 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
82 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
83 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
84 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
85 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
86 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
109 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
110 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
111 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
112 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
113 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
114 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
115 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
116 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
117 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
118 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
119 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
120 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
121 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
122 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
123 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
124 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
125 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
126 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
127 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
128 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
129 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
130 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
131 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
132 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
133 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
134 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
135 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
136 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
137 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
138 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
139 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
140 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
141 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
142 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
143 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
144 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
145 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
146 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
147 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
148 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
149 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
150 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
151 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
152 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
153 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
154 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
155 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
156 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
157 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
158 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
159 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
160 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
161 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
162 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
163 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
164 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
165 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
166 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
167 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
168 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
169 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
170 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
171 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
172 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
173 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
174 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
175 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
176 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
177 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
178 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
179 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
180 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
181 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
182 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
183 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
184 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.79
Metatranscriptomes 0.38
Isolates 14.83

Biome Distribution

Category Percentage (%)
Aerial Root 1.52
Bulb 0
Endosphere 3.42
Nodule 0
Rhizoplane 10.27
Rhizosphere 68.06
Stem 0
Stem Tuber 0
Unclassified 16.73

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10039816 3300002067 Bacteria 1373
2 JGI24738J21930_10003399 3300002075 Bacteria 4020
3 Ga0070658_10024707 3300005327 Bacteria 4818
4 Ga0070658_10039493 3300005327 Bacteria 3808
5 Ga0070658_10239681 3300005327 Bacteria 1537
6 Ga0070683_100053498 3300005329 Bacteria 3741
7 Ga0070683_100174382 3300005329 Bacteria 2041
8 Ga0070682_100043532 3300005337 Bacteria 2776
9 Ga0068868_100052812 3300005338 Bacteria 3200
10 Ga0070660_100070292 3300005339 Bacteria 2732
11 Ga0070660_100090317 3300005339 Bacteria 2415
12 Ga0070660_100125441 3300005339 Bacteria 2051
13 Ga0070691_10007226 3300005341 Bacteria 5084
14 Ga0070687_100010153 3300005343 Bacteria 4059
15 Ga0070692_10013245 3300005345 Bacteria 3840
16 Ga0070673_100032284 3300005364 Bacteria 3940
17 Ga0070659_100013559 3300005366 Bacteria 6070
18 Ga0070659_100037436 3300005366 Bacteria 3782
19 Ga0070667_100078959 3300005367 Bacteria 2813
20 Ga0070714_100001830 3300005435 Bacteria 15473
21 Ga0070678_100044085 3300005456 Bacteria 3183
22 Ga0070678_100073333 3300005456 Bacteria 2569
23 Ga0070662_100053532 3300005457 Bacteria 2922
24 Ga0068867_100019130 3300005459 Bacteria 4877
25 Ga0070685_10145022 3300005466 Bacteria 1499
26 Ga0070679_100016174 3300005530 Bacteria 7188
27 Ga0070684_100000859 3300005535 Bacteria 21453
28 Ga0070684_100037873 3300005535 Bacteria 4140
29 Ga0070684_100230015 3300005535 Bacteria 1693
30 Ga0068853_100051750 3300005539 Bacteria 3536
31 Ga0070672_100004836 3300005543 Bacteria 8850
32 Ga0070665_100000606 3300005548 Bacteria 49390
33 Ga0068857_100016723 3300005577 Bacteria 6426
34 Ga0068856_100033491 3300005614 Bacteria 5031
35 Ga0070702_100001666 3300005615 Bacteria 9225
36 Ga0068852_100044203 3300005616 Bacteria 3781
37 Ga0068864_100033319 3300005618 Bacteria 4380
38 Ga0068861_100037029 3300005719 Bacteria 3625
39 Ga0068858_100226640 3300005842 Bacteria 1771
40 Ga0068860_100001073 3300005843 Bacteria 30143
41 Ga0068860_100121546 3300005843 Bacteria 2501
42 Ga0081539_10099485 3300005985 Bacteria 1485
43 Ga0075365_10026697 3300006038 Bacteria 3668
44 Ga0075363_100038225 3300006048 Bacteria 2523
45 Ga0075364_10019844 3300006051 Bacteria 4224
46 Ga0097621_100167333 3300006237 Bacteria 1893
47 Ga0075370_10006141 3300006353 Bacteria 6025
48 Ga0068865_100024684 3300006881 Bacteria 3947
49 Ga0068865_100118152 3300006881 Bacteria 1967
50 Ga0105245_10007388 3300009098 Bacteria 9622
51 Ga0105245_10014379 3300009098 Bacteria 6896
52 Ga0105243_10012761 3300009148 Bacteria 6345
53 Ga0105243_10317272 3300009148 Bacteria 1419
54 Ga0105248_10042849 3300009177 Bacteria 5075
55 Ga0105249_10197661 3300009553 Bacteria 1966
56 Ga0105239_10003082 3300010375 Bacteria 20711
57 Ga0105239_10054721 3300010375 Bacteria 4378
58 Ga0105239_10142676 3300010375 Bacteria 2670
59 Ga0105246_10015819 3300011119 Bacteria 4770
60 Ga0157372_10013227 3300013307 Bacteria 8807
61 Ga0157372_10089213 3300013307 Bacteria 3503
62 Ga0157372_10190697 3300013307 Bacteria 2374
63 Ga0157372_10214224 3300013307 Bacteria 2232
64 Ga0157375_10006488 3300013308 Bacteria 10188
65 Ga0157375_10194719 3300013308 Bacteria 2182
66 Ga0157375_10242950 3300013308 Bacteria 1960
67 Ga0163163_10007508 3300014325 Bacteria 9622
68 Ga0163163_10189590 3300014325 Bacteria 2104
69 Ga0157377_10009640 3300014745 Bacteria 4749
70 Ga0206353_10659416 3300020082 Bacteria 2608
71 Ga0213873_10000173 3300021358 Bacteria 11928
72 Ga0213875_10004288 3300021388 Bacteria 7853
73 Ga0207643_10003700 3300025908 Bacteria 8226
74 Ga0207643_10036816 3300025908 Bacteria 2745
75 Ga0207705_10030209 3300025909 Bacteria 3866
76 Ga0207660_10043589 3300025917 Bacteria 3153
77 Ga0207657_10055403 3300025919 Bacteria 3425
78 Ga0207657_10055590 3300025919 Bacteria 3418
79 Ga0207687_10018606 3300025927 Bacteria 4589
80 Ga0207690_10035699 3300025932 Bacteria 3214
81 Ga0207690_10063189 3300025932 Bacteria 2524
82 Ga0207709_10031012 3300025935 Bacteria 3117
83 Ga0207704_10035447 3300025938 Bacteria 2859
84 Ga0207691_10010548 3300025940 Bacteria 8865
85 Ga0207661_10058365 3300025944 Bacteria 3105
86 Ga0207667_10040919 3300025949 Bacteria 4932
87 Ga0207640_10046049 3300025981 Bacteria 2804
88 Ga0207677_10071178 3300026023 Bacteria 2453
89 Ga0207677_10136984 3300026023 Bacteria 1868
90 Ga0207703_10159303 3300026035 Bacteria 1976
91 Ga0207708_10002132 3300026075 Bacteria 14600
92 Ga0207648_10005257 3300026089 Bacteria 13072
93 Ga0207648_10076121 3300026089 Bacteria 2925
94 Ga0207676_10043292 3300026095 Bacteria 3466
95 Ga0207674_10009755 3300026116 Bacteria 10937
96 Ga0207683_10062861 3300026121 Bacteria 3270
97 Ga0207683_10157036 3300026121 Bacteria 2055
98 Ga0207698_10022566 3300026142 Bacteria 4377
99 Ga0268266_10004169 3300028379 Bacteria 13938
100 Ga0268264_10000687 3300028381 Bacteria 39363
101 Ga0307511_10000713 3300030521 Bacteria 35403
102 Ga0307512_10039840 3300030522 Bacteria 3931
103 Ga0307516_10106481 3300031730 Bacteria 2614
104 Ga0307413_10012262 3300031824 Bacteria 4259
105 Ga0307410_10174854 3300031852 Bacteria 1621
106 Ga0307406_10009556 3300031901 Bacteria 5445
107 Ga0307406_10094101 3300031901 Bacteria 2025
108 Ga0307412_10037217 3300031911 Bacteria 3125
109 Ga0307412_10064140 3300031911 Bacteria 2481
110 Ga0307409_100123452 3300031995 Bacteria 2198
111 Ga0307416_100018760 3300032002 Bacteria 4884
112 Ga0307414_10009977 3300032004 Bacteria 5483
113 Ga0307411_10021943 3300032005 Bacteria 3749
114 Ga0307510_10062728 3300033180 Bacteria 3794
115 Ga0395900_0139951 3300037418 Bacteria 2479
116 Ga0436364_0857252 3300037853 Bacteria 4143
117 Ga0436364_1402708 3300037853 Bacteria 14463
118 Ga0395901_0058984 3300038443 Bacteria 3993
119 Ga0395901_0085976 3300038443 Bacteria 3288
120 Ga0436362_0069678 3300039453 Bacteria 57350
121 Ga0451843_1093684 3300041509 Bacteria 2001
122 Ga0466972_0077165 3300044658 Bacteria 1587
123 Ga0466965_0011979 3300044683 Bacteria 4071
124 Ga0466965_0076384 3300044683 Bacteria 1690
125 Ga0466966_0050923 3300044684 Bacteria 2633
126 Ga0466961_0035478 3300044693 Bacteria 3203
127 Ga0466963_0038915 3300044694 Bacteria 3112
128 Ga0466970_0014097 3300044765 Bacteria 4099
129 Ga0466970_0019452 3300044765 Bacteria 3521
130 Ga0466970_0040792 3300044765 Bacteria 2465
131 Ga0466970_0055402 3300044765 Bacteria 2117
132 Ga0466957_0025822 3300044842 Bacteria 3482
133 Ga0466960_0003349 3300044901 Bacteria 6152
134 Ga0466960_0006594 3300044901 Bacteria 4664
135 Ga0466960_0011152 3300044901 Bacteria 3749
136 Ga0466960_0012917 3300044901 Bacteria 3537
137 Ga0466960_0014012 3300044901 Bacteria 3419
138 Ga0466959_0108808 3300045049 Bacteria 1979
139 Ga0466967_0009352 3300045976 Bacteria 7267
140 Ga0466967_0010070 3300045976 Bacteria 7065
141 Ga0466967_0037299 3300045976 Bacteria 4158
142 Ga0466967_0114014 3300045976 Bacteria 2488
143 Ga0466967_0144450 3300045976 Bacteria 2218
144 Ga0495627_005227 3300046453 Bacteria 5269
145 Ga0495658_0016627 3300046683 Bacteria 3787
146 Ga0495589_0008437 3300046794 Bacteria 5383
147 Ga0496101_0011077 3300048904 Bacteria 5975
148 Ga0496101_0027294 3300048904 Bacteria 3976
149 Ga0496102_0030321 3300048905 Bacteria 4840
150 Ga0496102_0034295 3300048905 Bacteria 4564
151 Ga0496103_0020948 3300048906 Bacteria 3931
152 Ga0496104_0042693 3300048907 Bacteria 4257
153 Ga0496104_0053647 3300048907 Bacteria 3809
154 Ga0496106_0174991 3300048909 Bacteria 1702
155 Ga0496107_0018353 3300048910 Bacteria 4926
156 Ga0496107_0034807 3300048910 Bacteria 3609
157 Ga0496107_0052593 3300048910 Bacteria 2938
158 Ga0496108_0013842 3300048911 Bacteria 6580
159 Ga0496108_0161833 3300048911 Bacteria 1935
160 Ga0496109_0004367 3300048912 Bacteria 11813
161 Ga0496109_0035220 3300048912 Bacteria 4514
162 Ga0496109_0038345 3300048912 Bacteria 4332
163 Ga0496109_0102270 3300048912 Bacteria 2659
164 Ga0496109_0105101 3300048912 Bacteria 2622
165 Ga0496109_0182812 3300048912 Bacteria 1969
166 Ga0496110_0008067 3300048913 Bacteria 8453
167 Ga0496110_0077678 3300048913 Bacteria 2954
168 Ga0496113_0079781 3300048916 Bacteria 2506
169 Ga0496114_0005642 3300048917 Bacteria 9814
170 Ga0496114_0019142 3300048917 Bacteria 5547
171 Ga0496114_0035661 3300048917 Bacteria 4108
172 Ga0496115_0024020 3300048918 Bacteria 4735
173 Ga0496115_0101400 3300048918 Bacteria 2360
174 Ga0496117_0000413 3300048920 Bacteria 71922
175 Ga0496117_0001712 3300048920 Bacteria 30358
176 Ga0496117_0026108 3300048920 Bacteria 4575
177 Ga0496118_0028561 3300048921 Bacteria 4695
178 Ga0496119_0003224 3300048922 Bacteria 17071
179 Ga0496119_0049995 3300048922 Bacteria 2580
180 Ga0496120_0001021 3300048923 Bacteria 37451
181 Ga0496120_0006127 3300048923 Bacteria 9325
182 Ga0496122_0004961 3300048925 Bacteria 16123
183 Ga0496122_0009423 3300048925 Bacteria 10292
184 Ga0496122_0033891 3300048925 Bacteria 4191
185 Ga0496122_0061266 3300048925 Bacteria 2763
186 Ga0496123_0053539 3300048926 Bacteria 2666
187 Ga0496124_0012959 3300048927 Bacteria 8176
188 Ga0496124_0097548 3300048927 Bacteria 2386
189 Ga0496125_0000640 3300048928 Bacteria 58381
190 Ga0496125_0009892 3300048928 Bacteria 9701
191 Ga0496125_0011812 3300048928 Bacteria 8703
192 Ga0496126_0000006 3300048929 Bacteria 798804
193 Ga0496126_0002895 3300048929 Bacteria 22382
194 Ga0501034_0009129 3300049571 Bacteria 10410
195 Ga0501037_0059736 3300049573 Bacteria 2781
196 Ga0501037_0130501 3300049573 Bacteria 1802
197 Ga0501040_0061704 3300049576 Bacteria 2579
198 Ga0501040_0069331 3300049576 Bacteria 2433
199 Ga0501047_0031615 3300049581 Bacteria 5107
200 Ga0501047_0042290 3300049581 Bacteria 4404
201 Ga0501067_0002696 3300049583 Bacteria 9795
202 Ga0501067_0006639 3300049583 Bacteria 6419
203 Ga0501067_0015345 3300049583 Bacteria 4240
204 Ga0501067_0032627 3300049583 Bacteria 2891
205 Ga0501068_0003366 3300049584 Bacteria 8588
206 Ga0501069_0000486 3300049585 Bacteria 18160
207 Ga0501069_0007807 3300049585 Bacteria 5618
208 Ga0501070_0002647 3300049586 Bacteria 15633
209 Ga0501070_0019595 3300049586 Bacteria 5672
210 Ga0501070_0051430 3300049586 Bacteria 3420
211 Ga0501071_0005406 3300049587 Bacteria 8206
212 Ga0501073_0001137 3300049589 Bacteria 19351
213 Ga0501077_0004994 3300049593 Bacteria 8043
214 Ga0501080_0016285 3300049742 Bacteria 6864
215 Ga0501083_0012986 3300049744 Bacteria 5819
216 nmdc:mga00v17_161319_c1 3300050491 Bacteria 1443
217 nmdc:mga00v17_7467_c1 3300050491 Bacteria 3061
218 nmdc:mga0sz30_93003_c1 3300050516 Bacteria 1313
219 Ga0495655_0008130 3300053083 Bacteria 1981
220 Ga0500644_0000143 3300053088 Bacteria 44243
221 Ga0500593_000367 3300053117 Bacteria 18158
222 Ga0501084_0013970 3300054114 Bacteria 6647
223 Ga0501082_0010017 3300060353 Bacteria 8171
224 Ga0466962_0018074 3300061719 Bacteria 3391

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300030521 Ga0307511_10000713 Ga0307511_1000071323 355
2 3300031730 Ga0307516_10106481 Ga0307516_101064812 355
3 3300033180 Ga0307510_10062728 Ga0307510_100627283 355
4 3300045976 Ga0466967_0144450 Ga0466967_0144450_204_1553 358
5 3300048925 Ga0496122_0061266 Ga0496122_0061266_46_1155 366
6 3300044683 Ga0466965_0076384 Ga0466965_0076384_55_1278 368
7 3300048925 Ga0496122_0033891 Ga0496122_0033891_2298_3476 375
8 3300005337 Ga0070682_100043532 Ga0070682_1000435322 377
9 3300048927 Ga0496124_0012959 Ga0496124_0012959_3089_4285 379
10 3300048922 Ga0496119_0003224 Ga0496119_0003224_11748_12944 384
11 3300048923 Ga0496120_0001021 Ga0496120_0001021_17507_18703 384
12 3300013308 Ga0157375_10194719 Ga0157375_101947192 385
13 3300005535 Ga0070684_100000859 Ga0070684_10000085917 386
14 3300013308 Ga0157375_10006488 Ga0157375_100064884 386
15 3300048911 Ga0496108_0013842 Ga0496108_0013842_4693_6012 386
16 3300048912 Ga0496109_0035220 Ga0496109_0035220_340_1659 386
17 3300048920 Ga0496117_0026108 Ga0496117_0026108_1135_2331 386
18 3300048926 Ga0496123_0053539 Ga0496123_0053539_1180_2376 386
19 3300005339 Ga0070660_100125441 Ga0070660_1001254412 387
20 3300005466 Ga0070685_10145022 Ga0070685_101450221 387
21 3300005614 Ga0068856_100033491 Ga0068856_1000334914 387
22 3300005618 Ga0068864_100033319 Ga0068864_1000333193 387
23 3300005842 Ga0068858_100226640 Ga0068858_1002266402 387
24 3300006881 Ga0068865_100024684 Ga0068865_1000246842 387
25 3300009098 Ga0105245_10007388 Ga0105245_100073885 387
26 3300009177 Ga0105248_10042849 Ga0105248_100428494 387
27 3300010375 Ga0105239_10003082 Ga0105239_100030824 387
28 3300013307 Ga0157372_10013227 Ga0157372_100132279 387
29 3300014325 Ga0163163_10189590 Ga0163163_101895902 387
30 3300025927 Ga0207687_10018606 Ga0207687_100186061 387
31 3300025938 Ga0207704_10035447 Ga0207704_100354472 387
32 3300025944 Ga0207661_10058365 Ga0207661_100583653 387
33 3300026023 Ga0207677_10071178 Ga0207677_100711782 387
34 3300026035 Ga0207703_10159303 Ga0207703_101593032 387
35 3300026095 Ga0207676_10043292 Ga0207676_100432923 387
36 3300048913 Ga0496110_0008067 Ga0496110_0008067_4331_5644 387
37 3300005577 Ga0068857_100016723 Ga0068857_1000167234 388
38 3300026116 Ga0207674_10009755 Ga0207674_100097552 388
39 3300044658 Ga0466972_0077165 Ga0466972_0077165_20_1297 388
40 3300048912 Ga0496109_0004367 Ga0496109_0004367_4107_5453 388
41 3300048917 Ga0496114_0019142 Ga0496114_0019142_422_1768 388
42 3300005327 Ga0070658_10024707 Ga0070658_100247074 389
43 3300005843 Ga0068860_100121546 Ga0068860_1001215462 389
44 3300006237 Ga0097621_100167333 Ga0097621_1001673332 389
45 3300011119 Ga0105246_10015819 Ga0105246_100158193 389
46 3300025949 Ga0207667_10040919 Ga0207667_100409194 389
47 3300025981 Ga0207640_10046049 Ga0207640_100460492 389
48 3300041509 Ga0451843_1093684 Ga0451843_1093684_276_1454 389
49 3300046453 Ga0495627_005227 Ga0495627_005227_2041_3219 389
50 3300048905 Ga0496102_0034295 Ga0496102_0034295_42_1355 389
51 3300048920 Ga0496117_0001712 Ga0496117_0001712_24987_26165 389
52 3300048921 Ga0496118_0028561 Ga0496118_0028561_1651_2829 389
53 3300048925 Ga0496122_0004961 Ga0496122_0004961_8081_9259 389
54 3300048928 Ga0496125_0000640 Ga0496125_0000640_13449_14627 389
55 3300048928 Ga0496125_0011812 Ga0496125_0011812_7387_8565 389
56 3300050491 nmdc:mga00v17_161319_c1 nmdc:mga00v17_161319_c1_175_1353 389
57 3300050491 nmdc:mga00v17_7467_c1 nmdc:mga00v17_7467_c1_102_1280 389
58 3300005329 Ga0070683_100174382 Ga0070683_1001743821 390
59 iso_pu_bacteria 2643221553 2643785826 390
60 iso_pu_bacteria 2643221615 2644091538 390
61 iso_pu_bacteria 2643221657 2644321341 390
62 iso_pu_bacteria 2643221724 2644680229 390
63 iso_pu_bacteria 2728369380 2730229680 390
64 iso_pu_bacteria 2757320536 2758226169 390
65 iso_pu_bacteria 2773857758 2774380486 390
66 iso_pu_bacteria 2852646457 2852647326 390
67 iso_pu_bacteria 2857720070 2857721137 390
68 iso_pu_bacteria 2857723135 2857723850 390
69 iso_pu_bacteria 2904509784 2904512056 390
70 iso_pu_bacteria 2908678064 2908680973 390
71 iso_pu_bacteria 2919069694 2919072557 390
72 iso_pu_bacteria 2928090899 2928092214 390
73 iso_pu_bacteria 2945968032 2945971802 390
74 iso_pu_bacteria 2946041624 2946044256 390
75 iso_pu_bacteria 2946080515 2946080899 390
76 iso_pu_bacteria 2974294766 2974297115 390
77 iso_pu_bacteria 2974324384 2974326650 390
78 iso_pu_bacteria 2977228692 2977231351 390
79 iso_pu_bacteria 2977236895 2977240132 390
80 iso_pu_bacteria 2977264416 2977266574 390
81 iso_pu_bacteria 2984542743 2984545595 390
82 iso_pu_bacteria 2984580707 2984581012 390
83 iso_pu_bacteria 8004212874 8004214271 390
84 iso_pu_bacteria 8016254467 8016257606 390
85 3300031995 Ga0307409_100123452 Ga0307409_1001234522 391
86 iso_pu_bacteria 2643221597 2643995773 391
87 3300021358 Ga0213873_10000173 Ga0213873_100001736 392
88 3300021388 Ga0213875_10004288 Ga0213875_100042883 392
89 3300037853 Ga0436364_1402708 Ga0436364_1402708_11632_12819 392
90 3300039453 Ga0436362_0069678 Ga0436362_0069678_11497_12684 392
91 iso_pu_bacteria 2643221546 2643752084 392
92 3300044901 Ga0466960_0006594 Ga0466960_0006594_1656_2963 393
93 3300031901 Ga0307406_10009556 Ga0307406_100095566 394
94 3300031901 Ga0307406_10094101 Ga0307406_100941012 394
95 3300031911 Ga0307412_10064140 Ga0307412_100641402 394
96 3300032004 Ga0307414_10009977 Ga0307414_100099773 394
97 3300048920 Ga0496117_0000413 Ga0496117_0000413_47300_48496 394
98 3300048922 Ga0496119_0049995 Ga0496119_0049995_1179_2375 394
99 3300048923 Ga0496120_0006127 Ga0496120_0006127_2624_3820 394
100 3300048925 Ga0496122_0009423 Ga0496122_0009423_3440_4636 394
101 3300048927 Ga0496124_0097548 Ga0496124_0097548_1075_2271 394
102 3300048928 Ga0496125_0009892 Ga0496125_0009892_5105_6301 394
103 3300048929 Ga0496126_0002895 Ga0496126_0002895_19575_20771 394
104 3300006881 Ga0068865_100118152 Ga0068865_1001181522 396
105 3300005367 Ga0070667_100078959 Ga0070667_1000789592 397
106 3300005456 Ga0070678_100044085 Ga0070678_1000440853 397
107 3300026121 Ga0207683_10062861 Ga0207683_100628612 397
108 3300050516 nmdc:mga0sz30_93003_c1 nmdc:mga0sz30_93003_c1_38_1270 397
109 3300005339 Ga0070660_100070292 Ga0070660_1000702922 399
110 3300025919 Ga0207657_10055403 Ga0207657_100554032 399
111 3300049581 Ga0501047_0042290 Ga0501047_0042290_2633_3856 399
112 3300044765 Ga0466970_0019452 Ga0466970_0019452_1834_3147 400
113 3300049571 Ga0501034_0009129 Ga0501034_0009129_1813_3132 400
114 3300049573 Ga0501037_0130501 Ga0501037_0130501_79_1398 400
115 3300049583 Ga0501067_0002696 Ga0501067_0002696_1875_3194 400
116 3300049584 Ga0501068_0003366 Ga0501068_0003366_1811_3130 400
117 3300049587 Ga0501071_0005406 Ga0501071_0005406_5293_6612 400
118 3300054114 Ga0501084_0013970 Ga0501084_0013970_1761_3080 400
119 iso_pu_bacteria 2852677369 2852679261 400
120 iso_pu_bacteria 2935390628 2935391144 402
121 3300005985 Ga0081539_10099485 Ga0081539_100994851 403
122 3300006038 Ga0075365_10026697 Ga0075365_100266972 403
123 3300013307 Ga0157372_10214224 Ga0157372_102142242 403
124 3300031824 Ga0307413_10012262 Ga0307413_100122622 403
125 3300048929 Ga0496126_0000006 Ga0496126_0000006_322892_324286 403
126 3300049586 Ga0501070_0051430 Ga0501070_0051430_826_2115 403
127 3300053117 Ga0500593_000367 Ga0500593_000367_1988_3226 403
128 iso_pu_bacteria 2852635781 2852638772 403
129 iso_pu_bacteria 8025478263 8025479469 403
130 iso_pu_bacteria 8056447290 8056449542 403
131 iso_pu_bacteria 8056667051 8056667074 403
132 3300006048 Ga0075363_100038225 Ga0075363_1000382253 404
133 3300006353 Ga0075370_10006141 Ga0075370_100061416 404
134 3300031852 Ga0307410_10174854 Ga0307410_101748541 404
135 3300031911 Ga0307412_10037217 Ga0307412_100372172 404
136 3300032002 Ga0307416_100018760 Ga0307416_1000187604 404
137 3300032005 Ga0307411_10021943 Ga0307411_100219432 404
138 3300037418 Ga0395900_0139951 Ga0395900_0139951_957_2210 404
139 3300044683 Ga0466965_0011979 Ga0466965_0011979_380_1648 404
140 3300044684 Ga0466966_0050923 Ga0466966_0050923_970_2223 404
141 3300044765 Ga0466970_0055402 Ga0466970_0055402_617_1885 404
142 3300045049 Ga0466959_0108808 Ga0466959_0108808_189_1442 404
143 3300046794 Ga0495589_0008437 Ga0495589_0008437_550_1821 404
144 3300049576 Ga0501040_0061704 Ga0501040_0061704_1205_2461 404
145 3300049576 Ga0501040_0069331 Ga0501040_0069331_1104_2375 404
146 3300005329 Ga0070683_100053498 Ga0070683_1000534981 405
147 3300013308 Ga0157375_10242950 Ga0157375_102429502 405
148 3300025917 Ga0207660_10043589 Ga0207660_100435892 405
149 3300025932 Ga0207690_10063189 Ga0207690_100631893 405
150 3300038443 Ga0395901_0085976 Ga0395901_0085976_278_1561 405
151 3300048904 Ga0496101_0011077 Ga0496101_0011077_1611_2900 405
152 3300048905 Ga0496102_0030321 Ga0496102_0030321_857_2146 405
153 3300048906 Ga0496103_0020948 Ga0496103_0020948_482_1771 405
154 3300048907 Ga0496104_0042693 Ga0496104_0042693_1748_3061 405
155 3300048909 Ga0496106_0174991 Ga0496106_0174991_264_1577 405
156 3300048910 Ga0496107_0052593 Ga0496107_0052593_107_1396 405
157 3300048912 Ga0496109_0105101 Ga0496109_0105101_934_2223 405
158 3300048912 Ga0496109_0182812 Ga0496109_0182812_280_1593 405
159 3300048917 Ga0496114_0005642 Ga0496114_0005642_2577_3866 405
160 3300048918 Ga0496115_0101400 Ga0496115_0101400_844_2133 405
161 3300049583 Ga0501067_0032627 Ga0501067_0032627_1546_2859 405
162 3300006051 Ga0075364_10019844 Ga0075364_100198444 406
163 3300020082 Ga0206353_10659416 Ga0206353_106594162 406
164 3300045976 Ga0466967_0009352 Ga0466967_0009352_3868_5136 406
165 3300048904 Ga0496101_0027294 Ga0496101_0027294_1675_2958 406
166 3300048907 Ga0496104_0053647 Ga0496104_0053647_122_1405 406
167 3300048910 Ga0496107_0018353 Ga0496107_0018353_2089_3372 406
168 3300048910 Ga0496107_0034807 Ga0496107_0034807_66_1379 406
169 3300048912 Ga0496109_0038345 Ga0496109_0038345_2422_3705 406
170 3300048913 Ga0496110_0077678 Ga0496110_0077678_1321_2604 406
171 3300048917 Ga0496114_0035661 Ga0496114_0035661_1643_2926 406
172 3300048918 Ga0496115_0024020 Ga0496115_0024020_2443_3726 406
173 3300049585 Ga0501069_0000486 Ga0501069_0000486_2833_4176 406
174 3300049586 Ga0501070_0019595 Ga0501070_0019595_2246_3589 406
175 3300053083 Ga0495655_0008130 Ga0495655_0008130_369_1673 406
176 iso_pu_bacteria 2956939328 2956940300 406
177 iso_pu_bacteria 3001119090 3001121714 406
178 3300005435 Ga0070714_100001830 Ga0070714_1000018304 407
179 3300010375 Ga0105239_10054721 Ga0105239_100547212 407
180 3300013307 Ga0157372_10190697 Ga0157372_101906973 407
181 3300038443 Ga0395901_0058984 Ga0395901_0058984_253_1584 407
182 3300045976 Ga0466967_0010070 Ga0466967_0010070_1487_2773 407
183 3300046683 Ga0495658_0016627 Ga0495658_0016627_1534_2826 407
184 3300048911 Ga0496108_0161833 Ga0496108_0161833_81_1370 407
185 iso_pu_bacteria 2799112218 2799184091 407
186 3300005843 Ga0068860_100001073 Ga0068860_10000107319 408
187 3300028381 Ga0268264_10000687 Ga0268264_1000068716 408
188 3300030522 Ga0307512_10039840 Ga0307512_100398404 408
189 3300044694 Ga0466963_0038915 Ga0466963_0038915_1798_3090 408
190 3300048912 Ga0496109_0102270 Ga0496109_0102270_373_1776 408
191 3300048916 Ga0496113_0079781 Ga0496113_0079781_899_2302 408
192 3300037853 Ga0436364_0857252 Ga0436364_0857252_1585_2913 409
193 3300044693 Ga0466961_0035478 Ga0466961_0035478_1342_2646 409
194 3300044765 Ga0466970_0014097 Ga0466970_0014097_676_1980 409
195 3300044765 Ga0466970_0040792 Ga0466970_0040792_148_1452 409
196 3300044842 Ga0466957_0025822 Ga0466957_0025822_2042_3346 409
197 3300044901 Ga0466960_0003349 Ga0466960_0003349_2827_4149 409
198 3300044901 Ga0466960_0011152 Ga0466960_0011152_1383_2687 409
199 3300044901 Ga0466960_0014012 Ga0466960_0014012_811_2262 409
200 3300045976 Ga0466967_0037299 Ga0466967_0037299_2597_3913 409
201 3300061719 Ga0466962_0018074 Ga0466962_0018074_1635_2975 409
202 3300049573 Ga0501037_0059736 Ga0501037_0059736_337_1647 410
203 3300005327 Ga0070658_10239681 Ga0070658_102396811 411
204 3300002075 JGI24738J21930_10003399 JGI24738J21930_100033992 412
205 3300005338 Ga0068868_100052812 Ga0068868_1000528122 412
206 3300005341 Ga0070691_10007226 Ga0070691_100072263 412
207 3300005343 Ga0070687_100010153 Ga0070687_1000101532 412
208 3300005345 Ga0070692_10013245 Ga0070692_100132453 412
209 3300005364 Ga0070673_100032284 Ga0070673_1000322842 412
210 3300005366 Ga0070659_100037436 Ga0070659_1000374363 412
211 3300005456 Ga0070678_100073333 Ga0070678_1000733332 412
212 3300005457 Ga0070662_100053532 Ga0070662_1000535322 412
213 3300005459 Ga0068867_100019130 Ga0068867_1000191303 412
214 3300005535 Ga0070684_100037873 Ga0070684_1000378733 412
215 3300005535 Ga0070684_100230015 Ga0070684_1002300151 412
216 3300005539 Ga0068853_100051750 Ga0068853_1000517502 412
217 3300005543 Ga0070672_100004836 Ga0070672_1000048364 412
218 3300005615 Ga0070702_100001666 Ga0070702_1000016666 412
219 3300005616 Ga0068852_100044203 Ga0068852_1000442032 412
220 3300005719 Ga0068861_100037029 Ga0068861_1000370293 412
221 3300009098 Ga0105245_10014379 Ga0105245_100143796 412
222 3300009148 Ga0105243_10012761 Ga0105243_100127613 412
223 3300010375 Ga0105239_10142676 Ga0105239_101426762 412
224 3300013307 Ga0157372_10089213 Ga0157372_100892133 412
225 3300014325 Ga0163163_10007508 Ga0163163_100075084 412
226 3300014745 Ga0157377_10009640 Ga0157377_100096403 412
227 3300025908 Ga0207643_10003700 Ga0207643_100037003 412
228 3300025935 Ga0207709_10031012 Ga0207709_100310122 412
229 3300025940 Ga0207691_10010548 Ga0207691_100105486 412
230 3300026023 Ga0207677_10136984 Ga0207677_101369842 412
231 3300026075 Ga0207708_10002132 Ga0207708_1000213210 412
232 3300026089 Ga0207648_10005257 Ga0207648_100052578 412
233 3300026121 Ga0207683_10157036 Ga0207683_101570362 412
234 3300026142 Ga0207698_10022566 Ga0207698_100225663 412
235 3300045976 Ga0466967_0114014 Ga0466967_0114014_934_2217 412
236 3300049583 Ga0501067_0015345 Ga0501067_0015345_1650_2987 412
237 3300049585 Ga0501069_0007807 Ga0501069_0007807_3207_4544 412
238 3300053088 Ga0500644_0000143 Ga0500644_0000143_40948_42336 412
239 3300009148 Ga0105243_10317272 Ga0105243_103172721 413
240 3300005327 Ga0070658_10039493 Ga0070658_100394932 414
241 3300005339 Ga0070660_100090317 Ga0070660_1000903172 414
242 3300005366 Ga0070659_100013559 Ga0070659_1000135592 414
243 3300025908 Ga0207643_10036816 Ga0207643_100368162 414
244 3300025909 Ga0207705_10030209 Ga0207705_100302093 414
245 3300025919 Ga0207657_10055590 Ga0207657_100555902 414
246 3300025932 Ga0207690_10035699 Ga0207690_100356992 414
247 3300044901 Ga0466960_0012917 Ga0466960_0012917_58_1398 415
248 3300009553 Ga0105249_10197661 Ga0105249_101976611 416
249 3300026089 Ga0207648_10076121 Ga0207648_100761212 416
250 iso_pu_bacteria 2984576629 2984579116 416
251 iso_pu_bacteria 2990256926 2990259990 416
252 3300005548 Ga0070665_100000606 Ga0070665_10000060618 417
253 3300028379 Ga0268266_10004169 Ga0268266_100041693 417
254 3300049581 Ga0501047_0031615 Ga0501047_0031615_973_2304 417
255 3300049583 Ga0501067_0006639 Ga0501067_0006639_5026_6357 417
256 3300049586 Ga0501070_0002647 Ga0501070_0002647_11569_12900 417
257 3300049589 Ga0501073_0001137 Ga0501073_0001137_1786_3117 417
258 3300049593 Ga0501077_0004994 Ga0501077_0004994_4165_5496 417
259 3300049742 Ga0501080_0016285 Ga0501080_0016285_1944_3275 417
260 3300049744 Ga0501083_0012986 Ga0501083_0012986_3144_4475 417
261 3300060353 Ga0501082_0010017 Ga0501082_0010017_5650_6981 417
262 3300002067 JGI24735J21928_10039816 JGI24735J21928_100398161 418
263 3300005530 Ga0070679_100016174 Ga0070679_1000161746 418

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00570

HRDC

HRDC domain

241

307

0.97

PF01612

DNA_pol_A_exo1

3'-5' exonuclease

33

199

0.97

PF18305

DNA_pol_A_exoN

3' to 5' exonuclease C-terminal domain

327

417

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
7mpr-assembly1.cif.gz_A brucella melitensis nrnc 0.9023 44 203
2rhf-assembly1.cif.gz_A d. radiodurans recq hrdc domain 3 0.9003 228 300
3cym-assembly1.cif.gz_A crystal structure of protein bad_0989 from bifidobacterium adolescentis 0.8945 11 400
7mpu-assembly1.cif.gz_A-2 brucella melitensis nrnc bound to pgg 0.8879 44 203
7mpm-assembly1.cif.gz_A bartonella henselae nrnc bound to paa 0.8876 44 203
ID Description Score Start End Superfamily
af_I6XF17_15_224_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9635 13 204 3.30.420.10
3cymA01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9548 11 203 3.30.420.10
af_I6XF17_332_429_1.10.150.80 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;HRDC domain 0.9197 313 403 1.10.150.80
1yt3A01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9012 23 204 3.30.420.10
af_A0A1D8PDF4_132_438_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8935 23 204 3.30.420.10
ID Description Score Start End GO Terms
AF-A0A850CE81-F1-model_v4 Ribonuclease D 0.9749 22 187 GO:0003676
GO:0006139
GO:0008408
AF-A0A4T0V3I0-F1-model_v4 Ribonuclease D 0.9664 7 404 GO:0000166
GO:0003676
GO:0006139
GO:0008408
AF-A0A2T8F802-F1-model_v4 Ribonuclease D 0.9652 13 402 GO:0000166
GO:0003676
GO:0006139
GO:0008408
AF-A0A7V8YKU7-F1-model_v4 Ribonuclease D 0.961 13 210 GO:0003676
GO:0006139
GO:0008408
AF-A0A850CE81-F1-model_v4 Ribonuclease D 0.9579 22 187 GO:0003676
GO:0006139
GO:0008408

Feature Viewer

pLDDT pTM Quality
90.44 0.84 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map