F372250

General Info

Members Datasets Scaffolds Average Seq Length
263 181 229 343

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2818991444|2819587598
Length 387
Sequence SSEITPYYRKIYGLFTTYPKYKQHFQALLLQLRQANMATTSINLITPAQQKINRLWHLVGNTPMLQIHYTWQGRKGSIFVKCEHYNLTGSIKDRMALYILSEAYKTGAIQPGDTIVEATSGNTGIAFSAIGKALGHKVMIIMPDWLSKERFDIISSLGADIQRVSKAEGGFLGSIQKAEAMRRESDHYFLPRQFENEWNAEAHYYTTGPEIVKQLESIGRKPDAFVAGVGTGGTVMGTGRYLLSQYPGAQIHPLEPAESPTLTTGYKVGSHRIQGISDEFIPAIVQLKNLAPVVQAHDGDAIIMAQKLSQELGLAVGISSGANVIGAIQLQQQLGADATVVTLLPDSNKKYLSTDLMRQEPVKPGYISTDTVFTDFEPVSRANLNSF

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
3 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
4 2738541283 Pedobacter sp. OK701 Isolate Unclassified
5 2738543023 Pedobacter sp. OK628 Isolate Unclassified
6 2739367651 Pedobacter sp. OK291 Isolate Unclassified
7 2739367656 Pedobacter sp. CF523 Isolate Unclassified
8 2772190705 Chryseobacterium contaminans C-26 Isolate Rhizosphere
9 2818991437 Pedobacter terrae 518 Isolate Unclassified
10 2818991444 Filimonas endophytica 3197 Isolate Unclassified
11 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
12 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
13 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
14 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
15 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
16 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
17 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
18 2887375801 Parapusillimonas sp. SGNA-6 Isolate Rhizosphere
19 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
20 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
21 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
22 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
23 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
24 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
25 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
26 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
27 2914759650 Rhizosphaericola mali Isolate Rhizosphere
28 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
29 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
30 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
31 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
32 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
33 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
34 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
35 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
36 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
37 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
38 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
39 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
40 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
41 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
42 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
43 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
44 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
45 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
46 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
47 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
48 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
49 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
50 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
51 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
52 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
53 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
54 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
55 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
56 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
57 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
58 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
59 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
60 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
61 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
62 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
63 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
64 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
65 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
66 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
67 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
68 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
69 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
70 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
71 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
72 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
73 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
74 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
75 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
76 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
77 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
78 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
79 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
80 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
81 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
82 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
83 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
84 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
85 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
86 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
87 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
88 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
89 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
90 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
91 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
92 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
93 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
110 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
111 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
112 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
113 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
114 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
115 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
116 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
117 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
118 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
119 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
120 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
121 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
122 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
123 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
124 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
125 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
126 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
127 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
128 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
129 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
130 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
131 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
132 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
133 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
134 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
135 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
136 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
137 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
138 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
139 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
140 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
141 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
142 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
143 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
144 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
145 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
146 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
147 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
148 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
149 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
150 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
151 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
152 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
153 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
154 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
155 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
156 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
157 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
158 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
159 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
160 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
161 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
162 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
163 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
164 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
165 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
166 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
167 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
168 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
169 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
170 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
171 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
172 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
173 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
174 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
175 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
176 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
177 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
178 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
179 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
180 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
181 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.45
Metatranscriptomes 0
Isolates 12.55

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.75
Nodule 0
Rhizoplane 0.38
Rhizosphere 77.19
Stem 0
Stem Tuber 0
Unclassified 13.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1134848 2162886007 Bacteria 28426
2 JGI24740J21852_10006230 3300001979 Unclassified 4965
3 JGI25162J39368_1000173 3300002737 Bacteria 69607
4 JGI25152J39213_1000136 3300002773 Bacteria 50151
5 JGI25150J39212_1000008 3300002774 Bacteria 253098
6 JGI25151J46595_10000014 3300003187 Bacteria 253098
7 JGI25153J46596_10000020 3300003215 Bacteria 252978
8 rootH1_10037987 3300003316 Bacteria 8024
9 rootH1_10158801 3300003316 Bacteria 1562
10 rootH2_10008600 3300003320 Bacteria 44340
11 rootH2_10013921 3300003320 Bacteria 24800
12 rootH2_10071840 3300003320 Bacteria 14349
13 rootH2_10245900 3300003320 Bacteria 4828
14 rootL2_10053060 3300003322 Bacteria 3683
15 rootL2_10309975 3300003322 Bacteria 4811
16 rootH1_10040582 3300003323 Bacteria 11491
17 rootH1_10150430 3300003323 Bacteria 2906
18 Ga0055536_1000007 3300003781 Bacteria 345133
19 Ga0055530_10001141 3300003791 Bacteria 20680
20 Ga0065714_10002808 3300005288 Bacteria 13206
21 Ga0065714_10003373 3300005288 Bacteria 26575
22 Ga0065714_10009918 3300005288 Bacteria 5072
23 Ga0065714_10010120 3300005288 Bacteria 7737
24 Ga0065714_10065310 3300005288 Bacteria 10992
25 Ga0065704_10001030 3300005289 Bacteria 14589
26 Ga0065704_10070361 3300005289 Bacteria 30116
27 Ga0065704_10103878 3300005289 Unclassified 2159
28 Ga0068868_100021812 3300005338 Unclassified 4827
29 Ga0070671_100204059 3300005355 Unclassified 1676
30 Ga0070709_10153512 3300005434 Bacteria 1594
31 Ga0070679_100114993 3300005530 Bacteria 2676
32 Ga0068853_100212955 3300005539 Unclassified 1762
33 Ga0070664_100090119 3300005564 Bacteria 2654
34 Ga0068857_100064087 3300005577 Unclassified 3267
35 Ga0068856_100000021 3300005614 Bacteria 145017
36 Ga0068858_100179929 3300005842 Bacteria 1996
37 Ga0068860_100012124 3300005843 Bacteria 8493
38 Ga0068860_100043796 3300005843 Bacteria 4268
39 Ga0070717_10122871 3300006028 Bacteria 2226
40 Ga0068865_100000015 3300006881 Bacteria 129922
41 Ga0105244_10000043 3300009036 Bacteria 150556
42 Ga0105244_10027582 3300009036 Bacteria 3058
43 Ga0105240_10000316 3300009093 Bacteria 92409
44 Ga0105240_10003673 3300009093 Bacteria 23739
45 Ga0105240_10302571 3300009093 Bacteria 1829
46 Ga0105243_10000004 3300009148 Bacteria 601266
47 Ga0105241_10000230 3300009174 Bacteria 42250
48 Ga0105241_10012682 3300009174 Bacteria 6183
49 Ga0105242_10274146 3300009176 Bacteria 1529
50 Ga0105248_10066265 3300009177 Bacteria 4055
51 Ga0105237_10000087 3300009545 Bacteria 124934
52 Ga0105237_10000137 3300009545 Bacteria 102639
53 Ga0105237_10000511 3300009545 Bacteria 54911
54 Ga0105237_10001527 3300009545 Bacteria 30353
55 Ga0105237_10005672 3300009545 Bacteria 14044
56 Ga0105238_10000124 3300009551 Bacteria 85021
57 Ga0105239_10000165 3300010375 Bacteria 95249
58 Ga0105239_10000177 3300010375 Bacteria 92286
59 Ga0105239_10033148 3300010375 Bacteria 5673
60 Ga0157373_10002083 3300013100 Bacteria 15153
61 Ga0157373_10059539 3300013100 Bacteria 2706
62 Ga0157371_10000051 3300013102 Bacteria 180272
63 Ga0157371_10004480 3300013102 Bacteria 12180
64 Ga0157371_10005081 3300013102 Bacteria 11236
65 Ga0157370_10016255 3300013104 Bacteria 7539
66 Ga0157370_10038652 3300013104 Bacteria 4616
67 Ga0157370_10038955 3300013104 Unclassified 4597
68 Ga0157370_10052837 3300013104 Unclassified 3877
69 Ga0157370_10099679 3300013104 Bacteria 2722
70 Ga0157370_10110479 3300013104 Unclassified 2570
71 Ga0157369_10000221 3300013105 Bacteria 78608
72 Ga0157374_10102404 3300013296 Bacteria 2746
73 Ga0157378_10029254 3300013297 Bacteria 4863
74 Ga0163162_10011256 3300013306 Bacteria 8722
75 Ga0163162_10512337 3300013306 Bacteria 1330
76 Ga0157372_10000011 3300013307 Bacteria 277202
77 Ga0157372_10017514 3300013307 Bacteria 7688
78 Ga0157375_10765435 3300013308 Bacteria 1116
79 Ga0182008_10000423 3300014497 Bacteria 32646
80 Ga0157376_10624825 3300014969 Bacteria 1075
81 Ga0182006_1000233 3300015261 Bacteria 52709
82 Ga0182006_1009728 3300015261 Bacteria 4298
83 Ga0182006_1014355 3300015261 Bacteria 3417
84 Ga0183373_1005 3300015682 Bacteria 351562
85 Ga0163161_10000130 3300017792 Bacteria 70533
86 Ga0163161_10000153 3300017792 Bacteria 63614
87 Ga0163161_10000246 3300017792 Bacteria 48503
88 Ga0163161_10000681 3300017792 Bacteria 27156
89 Ga0209437_100299 3300025233 Bacteria 69659
90 Ga0207425_1000007 3300025245 Bacteria 777411
91 Ga0209129_1000006 3300025258 Bacteria 777761
92 Ga0209233_1019501 3300025261 Bacteria 1802
93 Ga0209676_1000058 3300025292 Bacteria 345185
94 Ga0209025_1000089 3300025294 Bacteria 254130
95 Ga0209758_1000016 3300025297 Bacteria 778557
96 Ga0209050_1000054 3300025298 Bacteria 345186
97 Ga0207426_1028126 3300025302 Unclassified 1866
98 Ga0207655_1000225 3300025728 Bacteria 94983
99 Ga0207699_10055062 3300025906 Bacteria 2365
100 Ga0207654_10000040 3300025911 Bacteria 105600
101 Ga0207695_10000055 3300025913 Bacteria 382776
102 Ga0207695_10000524 3300025913 Bacteria 81259
103 Ga0207695_10030156 3300025913 Bacteria 5974
104 Ga0207695_10062853 3300025913 Bacteria 3830
105 Ga0207671_10000096 3300025914 Bacteria 135750
106 Ga0207671_10000136 3300025914 Bacteria 112191
107 Ga0207671_10000584 3300025914 Bacteria 48796
108 Ga0207671_10001268 3300025914 Bacteria 29771
109 Ga0207652_10086253 3300025921 Bacteria 2752
110 Ga0207694_10000244 3300025924 Bacteria 52258
111 Ga0207650_10068157 3300025925 Bacteria 2671
112 Ga0207644_10026415 3300025931 Bacteria 4001
113 Ga0207709_10000010 3300025935 Bacteria 601305
114 Ga0207704_10000010 3300025938 Bacteria 188125
115 Ga0207639_10243994 3300026041 Unclassified 1563
116 Ga0207702_10000515 3300026078 Bacteria 43571
117 Ga0207676_10143644 3300026095 Bacteria 2046
118 Ga0207676_10247046 3300026095 Bacteria 1604
119 Ga0268266_10006497 3300028379 Bacteria 10700
120 Ga0268264_10059520 3300028381 Bacteria 3200
121 Ga0268264_10083063 3300028381 Unclassified 2743
122 Ga0265318_10000478 3300028577 Bacteria 29581
123 Ga0307515_10000141 3300028794 Bacteria 172241
124 Ga0316177_1161521 3300030731 Bacteria 2462
125 Ga0316176_1041350 3300030732 Bacteria 5758
126 Ga0316183_1197657 3300030742 Bacteria 15862
127 Ga0316181_1227275 3300030744 Bacteria 9614
128 Ga0265330_10008375 3300031235 Bacteria 4980
129 Ga0265320_10003445 3300031240 Bacteria 10644
130 Ga0265339_10019155 3300031249 Viruses 4020
131 Ga0265331_10003588 3300031250 Bacteria 9936
132 Ga0265316_10001892 3300031344 Bacteria 21979
133 Ga0307513_10065645 3300031456 Bacteria 3818
134 Ga0307513_10090566 3300031456 Bacteria 3119
135 Ga0307509_10204970 3300031507 Bacteria 1804
136 Ga0265342_10007790 3300031712 Bacteria 7790
137 Ga0307405_10000037 3300031731 Bacteria 91045
138 Ga0307407_10000014 3300031903 Bacteria 156064
139 Ga0307412_10000018 3300031911 Bacteria 284374
140 Ga0307409_100017885 3300031995 Bacteria 4742
141 Ga0307416_100000007 3300032002 Bacteria 433284
142 Ga0307414_10000676 3300032004 Bacteria 17495
143 Ga0307414_10000765 3300032004 Bacteria 16475
144 Ga0307414_10034854 3300032004 Bacteria 3342
145 Ga0307414_10110188 3300032004 Bacteria 2093
146 Ga0307507_10000071 3300033179 Bacteria 158391
147 Ga0307510_10005394 3300033180 Bacteria 15223
148 Ga0307510_10026551 3300033180 Bacteria 6653
149 Ga0373926_0043291 3300035083 Bacteria 1611
150 Ga0395899_0000001 3300037312 Bacteria 1750322
151 Ga0395899_0000002 3300037312 Bacteria 1324310
152 Ga0395899_0000033 3300037312 Bacteria 306589
153 Ga0395899_0000765 3300037312 Bacteria 31770
154 Ga0395905_0006683 3300037471 Bacteria 11556
155 Ga0436361_0336534 3300039447 Bacteria 1566
156 Ga0451807_2113132 3300041486 Bacteria 1423
157 Ga0439457_007857 3300042014 Bacteria 2540
158 Ga0451577_0000024 3300042876 Bacteria 411758
159 Ga0451577_0017119 3300042876 Bacteria 6701
160 Ga0451577_0105409 3300042876 Bacteria 2520
161 Ga0451577_0147764 3300042876 Bacteria 2114
162 Ga0453683_0000740 3300044673 Bacteria 33318
163 Ga0466966_0002122 3300044684 Bacteria 12862
164 Ga0453684_0206343 3300044712 Unclassified 2287
165 Ga0453684_0243407 3300044712 Bacteria 2069
166 Ga0453684_0336287 3300044712 Bacteria 1706
167 Ga0466957_0000484 3300044842 Bacteria 19807
168 Ga0495638_0116570 3300046460 Bacteria 1582
169 Ga0495650_0000003 3300046471 Bacteria 900730
170 Ga0495585_0000041 3300046492 Bacteria 126995
171 Ga0495585_0000405 3300046492 Bacteria 41777
172 Ga0495606_0000642 3300046507 Bacteria 54856
173 Ga0495606_0021844 3300046507 Bacteria 4681
174 Ga0495606_0058066 3300046507 Bacteria 2489
175 Ga0495610_0001047 3300046512 Bacteria 25418
176 Ga0495610_0002662 3300046512 Bacteria 14731
177 Ga0495610_0024559 3300046512 Bacteria 3249
178 Ga0495616_0032807 3300046513 Bacteria 2710
179 Ga0495628_0038795 3300046516 Unclassified 3811
180 Ga0495637_0012275 3300046520 Bacteria 4101
181 Ga0495637_0032064 3300046520 Bacteria 2318
182 Ga0495648_0000056 3300046524 Bacteria 158489
183 Ga0495648_0000662 3300046524 Bacteria 36792
184 Ga0495648_0001836 3300046524 Bacteria 20411
185 Ga0495609_0001113 3300046538 Bacteria 18658
186 Ga0495609_0002802 3300046538 Bacteria 10471
187 Ga0495609_0011010 3300046538 Bacteria 4320
188 Ga0495622_0004950 3300046557 Bacteria 6171
189 Ga0495633_0000592 3300046558 Bacteria 35047
190 Ga0495668_0000153 3300046616 Bacteria 104580
191 Ga0495668_0006040 3300046616 Bacteria 8027
192 Ga0495625_0002880 3300046660 Bacteria 17999
193 Ga0495625_0038912 3300046660 Bacteria 3476
194 Ga0495625_0070315 3300046660 Bacteria 2457
195 Ga0495661_0000114 3300046665 Bacteria 95935
196 Ga0495661_0022609 3300046665 Bacteria 4091
197 Ga0495658_0006339 3300046683 Bacteria 5812
198 Ga0495658_0047744 3300046683 Bacteria 2412
199 Ga0495658_0173869 3300046683 Bacteria 1334
200 Ga0495613_0028513 3300046689 Bacteria 4153
201 Ga0495649_0000003 3300046694 Bacteria 880817
202 Ga0495687_000320 3300047443 Bacteria 62358
203 Ga0495687_032298 3300047443 Bacteria 2391
204 Ga0495686_0000040 3300047472 Bacteria 301210
205 Ga0495686_0005080 3300047472 Bacteria 10533
206 Ga0495686_0009313 3300047472 Bacteria 7086
207 Ga0496116_0003498 3300048919 Bacteria 15460
208 Ga0496117_0019724 3300048920 Bacteria 5525
209 Ga0496122_0002011 3300048925 Bacteria 30241
210 Ga0496122_0045329 3300048925 Bacteria 3419
211 Ga0496123_0001485 3300048926 Bacteria 32574
212 Ga0496126_0000005 3300048929 Bacteria 891906
213 Ga0495678_014018 3300049459 Bacteria 3740
214 Ga0495682_0032574 3300049460 Bacteria 1925
215 Ga0501040_0082210 3300049576 Bacteria 2233
216 Ga0501047_0036912 3300049581 Bacteria 4723
217 Ga0501047_0112046 3300049581 Bacteria 2611
218 Ga0501221_004275 3300049704 Unclassified 2367
219 Ga0501241_010524 3300049758 Bacteria 1681
220 Ga0501035_0360940 3300049822 Unclassified 1214
221 Ga0501044_0024403 3300049823 Bacteria 6419
222 Ga0495619_0083973 3300053085 Bacteria 2149
223 Ga0500651_0000048 3300053093 Bacteria 83662
224 Ga0500614_014142 3300053123 Bacteria 1763
225 Ga0500618_000546 3300053125 Bacteria 23414
226 Ga0500618_000633 3300053125 Bacteria 21213
227 Ga0500561_0007323 3300053137 Bacteria 2144
228 Ga0500624_000197 3300053157 Bacteria 23949
229 Ga0500634_0034586 3300053161 Bacteria 2753

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046512 Ga0495610_0024559 Ga0495610_0024559_2305_3186 265
2 3300014969 Ga0157376_10624825 Ga0157376_106248251 292
3 iso_pu_bacteria 2887375801 2887380074 292
4 3300009093 Ga0105240_10000316 Ga0105240_1000031610 296
5 3300009174 Ga0105241_10000230 Ga0105241_1000023011 296
6 3300009545 Ga0105237_10000511 Ga0105237_1000051110 296
7 3300009551 Ga0105238_10000124 Ga0105238_1000012475 296
8 3300010375 Ga0105239_10000177 Ga0105239_1000017710 296
9 3300013308 Ga0157375_10765435 Ga0157375_107654351 296
10 3300047443 Ga0495687_032298 Ga0495687_032298_1403_2377 296
11 3300049576 Ga0501040_0082210 Ga0501040_0082210_669_1697 296
12 3300049822 Ga0501035_0360940 Ga0501035_0360940_197_1168 296
13 3300046512 Ga0495610_0001047 Ga0495610_0001047_674_1720 299
14 3300003316 rootH1_10037987 rootH1_100379872 302
15 3300005843 Ga0068860_100043796 Ga0068860_1000437963 302
16 3300009177 Ga0105248_10066265 Ga0105248_100662652 302
17 3300026095 Ga0207676_10143644 Ga0207676_101436442 302
18 3300028381 Ga0268264_10059520 Ga0268264_100595203 302
19 3300017792 Ga0163161_10000130 Ga0163161_1000013017 307
20 3300049758 Ga0501241_010524 Ga0501241_010524_37_1083 307
21 3300046524 Ga0495648_0001836 Ga0495648_0001836_14891_15949 308
22 3300005434 Ga0070709_10153512 Ga0070709_101535122 309
23 3300013104 Ga0157370_10052837 Ga0157370_100528375 309
24 3300025906 Ga0207699_10055062 Ga0207699_100550622 309
25 3300006028 Ga0070717_10122871 Ga0070717_101228712 310
26 3300005288 Ga0065714_10009918 Ga0065714_100099185 312
27 3300005564 Ga0070664_100090119 Ga0070664_1000901192 312
28 3300005577 Ga0068857_100064087 Ga0068857_1000640872 312
29 3300013104 Ga0157370_10038955 Ga0157370_100389552 312
30 3300026095 Ga0207676_10247046 Ga0207676_102470463 312
31 3300028577 Ga0265318_10000478 Ga0265318_100004788 312
32 3300031235 Ga0265330_10008375 Ga0265330_100083751 312
33 3300031240 Ga0265320_10003445 Ga0265320_100034453 312
34 3300031249 Ga0265339_10019155 Ga0265339_100191551 312
35 3300031250 Ga0265331_10003588 Ga0265331_100035888 312
36 3300031344 Ga0265316_10001892 Ga0265316_100018925 312
37 3300031712 Ga0265342_10007790 Ga0265342_100077902 312
38 3300035083 Ga0373926_0043291 Ga0373926_0043291_343_1389 312
39 3300042876 Ga0451577_0105409 Ga0451577_0105409_449_1492 312
40 3300042876 Ga0451577_0147764 Ga0451577_0147764_801_1868 312
41 3300044712 Ga0453684_0336287 Ga0453684_0336287_382_1425 312
42 3300046507 Ga0495606_0058066 Ga0495606_0058066_1083_2093 312
43 3300046683 Ga0495658_0173869 Ga0495658_0173869_209_1252 312
44 3300046689 Ga0495613_0028513 Ga0495613_0028513_783_1826 312
45 3300053085 Ga0495619_0083973 Ga0495619_0083973_720_1763 312
46 iso_pu_bacteria 2585427687 2586208763 312
47 iso_pu_bacteria 2852623160 2852625898 312
48 3300031507 Ga0307509_10204970 Ga0307509_102049702 313
49 3300032004 Ga0307414_10000765 Ga0307414_100007653 313
50 iso_pu_bacteria 2821136567 2821138869 313
51 iso_pu_bacteria 2904467357 2904472552 313
52 iso_pu_bacteria 2929154850 2929157681 314
53 3300005842 Ga0068858_100179929 Ga0068858_1001799292 315
54 3300048929 Ga0496126_0000005 Ga0496126_0000005_734654_735691 315
55 3300010375 Ga0105239_10000165 Ga0105239_1000016527 316
56 3300013104 Ga0157370_10110479 Ga0157370_101104793 316
57 3300013296 Ga0157374_10102404 Ga0157374_101024042 316
58 3300025913 Ga0207695_10062853 Ga0207695_100628532 316
59 3300028379 Ga0268266_10006497 Ga0268266_100064975 316
60 3300039447 Ga0436361_0336534 Ga0436361_0336534_203_1273 316
61 iso_pu_bacteria 2902048731 2902049078 316
62 3300001979 JGI24740J21852_10006230 JGI24740J21852_100062302 317
63 3300003323 rootH1_10040582 rootH1_100405822 317
64 3300005530 Ga0070679_100114993 Ga0070679_1001149932 317
65 3300005614 Ga0068856_100000021 Ga0068856_100000021117 317
66 3300013102 Ga0157371_10004480 Ga0157371_100044804 317
67 3300013105 Ga0157369_10000221 Ga0157369_1000022126 317
68 3300013307 Ga0157372_10000011 Ga0157372_1000001138 317
69 3300013307 Ga0157372_10017514 Ga0157372_100175147 317
70 3300025302 Ga0207426_1028126 Ga0207426_10281262 317
71 3300025921 Ga0207652_10086253 Ga0207652_100862532 317
72 3300026078 Ga0207702_10000515 Ga0207702_1000051536 317
73 3300037312 Ga0395899_0000765 Ga0395899_0000765_28610_29656 317
74 3300042014 Ga0439457_007857 Ga0439457_007857_723_1811 317
75 3300042876 Ga0451577_0000024 Ga0451577_0000024_226028_227086 317
76 3300044684 Ga0466966_0002122 Ga0466966_0002122_7627_8673 317
77 3300047472 Ga0495686_0005080 Ga0495686_0005080_4646_5677 317
78 3300047472 Ga0495686_0009313 Ga0495686_0009313_5447_6508 317
79 3300053125 Ga0500618_000546 Ga0500618_000546_521_1558 317
80 3300003320 rootH2_10071840 rootH2_100718408 318
81 3300009093 Ga0105240_10302571 Ga0105240_103025712 318
82 3300013297 Ga0157378_10029254 Ga0157378_100292543 318
83 3300025913 Ga0207695_10030156 Ga0207695_100301563 318
84 3300037312 Ga0395899_0000002 Ga0395899_0000002_167274_168305 318
85 3300003320 rootH2_10008600 rootH2_1000860015 319
86 3300003781 Ga0055536_1000007 Ga0055536_1000007110 319
87 3300003791 Ga0055530_10001141 Ga0055530_100011416 319
88 3300005289 Ga0065704_10103878 Ga0065704_101038782 319
89 3300013104 Ga0157370_10038652 Ga0157370_100386524 319
90 3300025292 Ga0209676_1000058 Ga0209676_1000058106 319
91 3300025298 Ga0209050_1000054 Ga0209050_1000054106 319
92 3300042876 Ga0451577_0017119 Ga0451577_0017119_3884_4942 319
93 3300044673 Ga0453683_0000740 Ga0453683_0000740_10727_11785 319
94 3300044712 Ga0453684_0243407 Ga0453684_0243407_973_2031 319
95 3300015261 Ga0182006_1000233 Ga0182006_100023314 320
96 3300025261 Ga0209233_1019501 Ga0209233_10195011 320
97 3300037312 Ga0395899_0000001 Ga0395899_0000001_106458_107510 320
98 iso_pu_bacteria 2739367651 2739589948 320
99 iso_pu_bacteria 2739367656 2739617729 320
100 iso_pu_bacteria 2772190705 2772606992 320
101 iso_pu_bacteria 2818991437 2819548620 320
102 iso_pu_bacteria 2842722452 2842725520 320
103 iso_pu_bacteria 2842909656 2842914666 320
104 iso_pu_bacteria 2849281842 2849283912 320
105 iso_pu_bacteria 2904445276 2904448560 320
106 iso_pu_bacteria 2914759650 2914762205 320
107 iso_pu_bacteria 2945997725 2945999600 320
108 iso_pu_bacteria 2954016120 2954019366 320
109 3300003316 rootH1_10158801 rootH1_101588012 321
110 3300009545 Ga0105237_10000137 Ga0105237_1000013770 321
111 3300025914 Ga0207671_10001268 Ga0207671_100012688 321
112 3300031456 Ga0307513_10065645 Ga0307513_100656451 321
113 3300031456 Ga0307513_10090566 Ga0307513_100905662 321
114 3300037312 Ga0395899_0000033 Ga0395899_0000033_116830_117879 321
115 3300044712 Ga0453684_0206343 Ga0453684_0206343_323_1420 321
116 3300046616 Ga0495668_0006040 Ga0495668_0006040_360_1406 321
117 3300047472 Ga0495686_0000040 Ga0495686_0000040_183220_184272 321
118 3300049581 Ga0501047_0036912 Ga0501047_0036912_1974_3020 321
119 3300049581 Ga0501047_0112046 Ga0501047_0112046_633_1673 321
120 3300049823 Ga0501044_0024403 Ga0501044_0024403_3226_4272 321
121 3300053093 Ga0500651_0000048 Ga0500651_0000048_28292_29341 321
122 iso_pu_bacteria 2896317667 2896321604 321
123 iso_pu_bacteria 3003233435 3003233677 321
124 3300003320 rootH2_10013921 rootH2_100139217 322
125 3300009093 Ga0105240_10003673 Ga0105240_100036735 322
126 3300009174 Ga0105241_10012682 Ga0105241_100126824 322
127 3300009545 Ga0105237_10005672 Ga0105237_100056725 322
128 3300010375 Ga0105239_10033148 Ga0105239_100331485 322
129 3300013306 Ga0163162_10512337 Ga0163162_105123371 322
130 3300025913 Ga0207695_10000055 Ga0207695_10000055112 322
131 3300025914 Ga0207671_10000584 Ga0207671_1000058424 322
132 3300028794 Ga0307515_10000141 Ga0307515_1000014150 322
133 iso_pu_bacteria 2721755487 2722727705 322
134 iso_pu_bacteria 2738541283 2738757527 322
135 iso_pu_bacteria 2738543023 2739304743 322
136 iso_pu_bacteria 2852627209 2852627531 322
137 iso_pu_bacteria 2890737413 2890739289 322
138 iso_pu_bacteria 2896344016 2896345810 322
139 iso_pu_bacteria 2904780799 2904781608 322
140 iso_pu_bacteria 2919177583 2919177682 322
141 iso_pu_bacteria 2919186247 2919187706 322
142 iso_pu_bacteria 2939664404 2939665027 322
143 3300005843 Ga0068860_100012124 Ga0068860_1000121248 323
144 3300028381 Ga0268264_10083063 Ga0268264_100830632 323
145 iso_pu_bacteria 2889290771 2889293009 323
146 3300003323 rootH1_10150430 rootH1_101504302 324
147 3300005288 Ga0065714_10002808 Ga0065714_100028081 324
148 3300005338 Ga0068868_100021812 Ga0068868_1000218122 324
149 3300005355 Ga0070671_100204059 Ga0070671_1002040592 324
150 3300006881 Ga0068865_100000015 Ga0068865_10000001524 324
151 3300009036 Ga0105244_10027582 Ga0105244_100275823 324
152 3300013102 Ga0157371_10000051 Ga0157371_10000051103 324
153 3300015682 Ga0183373_1005 Ga0183373_1005126 324
154 3300017792 Ga0163161_10000246 Ga0163161_100002464 324
155 3300025911 Ga0207654_10000040 Ga0207654_1000004022 324
156 3300025913 Ga0207695_10000524 Ga0207695_1000052420 324
157 3300025914 Ga0207671_10000136 Ga0207671_1000013676 324
158 3300025924 Ga0207694_10000244 Ga0207694_1000024456 324
159 3300025925 Ga0207650_10068157 Ga0207650_100681572 324
160 3300025931 Ga0207644_10026415 Ga0207644_100264152 324
161 3300025938 Ga0207704_10000010 Ga0207704_1000001045 324
162 3300031731 Ga0307405_10000037 Ga0307405_1000003717 324
163 3300033179 Ga0307507_10000071 Ga0307507_10000071120 324
164 3300037471 Ga0395905_0006683 Ga0395905_0006683_875_1951 324
165 3300041486 Ga0451807_2113132 Ga0451807_2113132_287_1333 324
166 3300046520 Ga0495637_0012275 Ga0495637_0012275_771_1817 324
167 3300049704 Ga0501221_004275 Ga0501221_004275_743_1819 324
168 3300002737 JGI25162J39368_1000173 JGI25162J39368_100017310 325
169 3300002773 JGI25152J39213_1000136 JGI25152J39213_100013612 325
170 3300002774 JGI25150J39212_1000008 JGI25150J39212_1000008112 325
171 3300003187 JGI25151J46595_10000014 JGI25151J46595_10000014112 325
172 3300003215 JGI25153J46596_10000020 JGI25153J46596_10000020112 325
173 3300003320 rootH2_10245900 rootH2_102459004 325
174 3300003322 rootL2_10053060 rootL2_100530602 325
175 3300003322 rootL2_10309975 rootL2_103099752 325
176 3300005539 Ga0068853_100212955 Ga0068853_1002129552 325
177 3300009176 Ga0105242_10274146 Ga0105242_102741462 325
178 3300009545 Ga0105237_10000087 Ga0105237_1000008745 325
179 3300025233 Ga0209437_100299 Ga0209437_1002999 325
180 3300025245 Ga0207425_1000007 Ga0207425_100000763 325
181 3300025258 Ga0209129_1000006 Ga0209129_100000663 325
182 3300025294 Ga0209025_1000089 Ga0209025_1000089109 325
183 3300025297 Ga0209758_1000016 Ga0209758_100001663 325
184 3300025914 Ga0207671_10000096 Ga0207671_1000009650 325
185 3300026041 Ga0207639_10243994 Ga0207639_102439942 325
186 3300032004 Ga0307414_10110188 Ga0307414_101101883 325
187 3300044842 Ga0466957_0000484 Ga0466957_0000484_12906_14000 325
188 3300046460 Ga0495638_0116570 Ga0495638_0116570_506_1567 325
189 3300046471 Ga0495650_0000003 Ga0495650_0000003_287753_288814 325
190 3300046492 Ga0495585_0000405 Ga0495585_0000405_28298_29377 325
191 3300046507 Ga0495606_0000642 Ga0495606_0000642_48872_49936 325
192 3300046507 Ga0495606_0021844 Ga0495606_0021844_2040_3131 325
193 3300046512 Ga0495610_0002662 Ga0495610_0002662_240_1301 325
194 3300046513 Ga0495616_0032807 Ga0495616_0032807_683_1747 325
195 3300046516 Ga0495628_0038795 Ga0495628_0038795_1472_2533 325
196 3300046524 Ga0495648_0000056 Ga0495648_0000056_40380_41459 325
197 3300046524 Ga0495648_0000662 Ga0495648_0000662_19652_20713 325
198 3300046538 Ga0495609_0001113 Ga0495609_0001113_988_2067 325
199 3300046538 Ga0495609_0011010 Ga0495609_0011010_737_1798 325
200 3300046616 Ga0495668_0000153 Ga0495668_0000153_11582_12643 325
201 3300046660 Ga0495625_0038912 Ga0495625_0038912_1217_2278 325
202 3300046660 Ga0495625_0070315 Ga0495625_0070315_258_1319 325
203 3300046665 Ga0495661_0000114 Ga0495661_0000114_10345_11406 325
204 3300046665 Ga0495661_0022609 Ga0495661_0022609_2422_3483 325
205 3300046683 Ga0495658_0006339 Ga0495658_0006339_4146_5225 325
206 3300046683 Ga0495658_0047744 Ga0495658_0047744_164_1225 325
207 3300046694 Ga0495649_0000003 Ga0495649_0000003_404757_405818 325
208 3300049459 Ga0495678_014018 Ga0495678_014018_40_1101 325
209 3300053125 Ga0500618_000633 Ga0500618_000633_14106_15167 325
210 3300053137 Ga0500561_0007323 Ga0500561_0007323_972_2033 325
211 3300053161 Ga0500634_0034586 Ga0500634_0034586_431_1492 325
212 iso_pu_bacteria 2842903701 2842908360 325
213 2162886007 SwRhRL2b_contig_1134848 SwRhRL2b_0452.00006060 326
214 3300005288 Ga0065714_10003373 Ga0065714_1000337319 326
215 3300005288 Ga0065714_10010120 Ga0065714_100101204 326
216 3300005288 Ga0065714_10065310 Ga0065714_1006531011 326
217 3300005289 Ga0065704_10001030 Ga0065704_100010306 326
218 3300005289 Ga0065704_10070361 Ga0065704_100703614 326
219 3300009036 Ga0105244_10000043 Ga0105244_10000043111 326
220 3300009148 Ga0105243_10000004 Ga0105243_10000004321 326
221 3300009545 Ga0105237_10001527 Ga0105237_1000152722 326
222 3300013100 Ga0157373_10002083 Ga0157373_100020838 326
223 3300013100 Ga0157373_10059539 Ga0157373_100595393 326
224 3300013102 Ga0157371_10005081 Ga0157371_100050815 326
225 3300013104 Ga0157370_10016255 Ga0157370_100162554 326
226 3300013104 Ga0157370_10099679 Ga0157370_100996793 326
227 3300013306 Ga0163162_10011256 Ga0163162_100112568 326
228 3300014497 Ga0182008_10000423 Ga0182008_1000042316 326
229 3300015261 Ga0182006_1009728 Ga0182006_10097285 326
230 3300015261 Ga0182006_1014355 Ga0182006_10143553 326
231 3300017792 Ga0163161_10000153 Ga0163161_1000015317 326
232 3300017792 Ga0163161_10000681 Ga0163161_1000068117 326
233 3300025728 Ga0207655_1000225 Ga0207655_100022543 326
234 3300025935 Ga0207709_10000010 Ga0207709_10000010323 326
235 3300030731 Ga0316177_1161521 Ga0316177_11615212 326
236 3300030732 Ga0316176_1041350 Ga0316176_10413502 326
237 3300030742 Ga0316183_1197657 Ga0316183_11976572 326
238 3300030744 Ga0316181_1227275 Ga0316181_12272752 326
239 3300031903 Ga0307407_10000014 Ga0307407_1000001493 326
240 3300031911 Ga0307412_10000018 Ga0307412_10000018107 326
241 3300031995 Ga0307409_100017885 Ga0307409_1000178853 326
242 3300032002 Ga0307416_100000007 Ga0307416_100000007153 326
243 3300032004 Ga0307414_10000676 Ga0307414_100006763 326
244 3300032004 Ga0307414_10034854 Ga0307414_100348543 326
245 3300033180 Ga0307510_10005394 Ga0307510_1000539410 326
246 3300033180 Ga0307510_10026551 Ga0307510_100265514 326
247 3300046492 Ga0495585_0000041 Ga0495585_0000041_110646_111731 326
248 3300046520 Ga0495637_0032064 Ga0495637_0032064_1184_2269 326
249 3300046524 Ga0495648_0000056 Ga0495648_0000056_11694_12758 326
250 3300046538 Ga0495609_0002802 Ga0495609_0002802_7685_8749 326
251 3300046557 Ga0495622_0004950 Ga0495622_0004950_3125_4189 326
252 3300046558 Ga0495633_0000592 Ga0495633_0000592_20799_21869 326
253 3300046660 Ga0495625_0002880 Ga0495625_0002880_16480_17544 326
254 3300047443 Ga0495687_000320 Ga0495687_000320_11919_12989 326
255 3300048919 Ga0496116_0003498 Ga0496116_0003498_12295_13362 326
256 3300048920 Ga0496117_0019724 Ga0496117_0019724_2203_3270 326
257 3300048925 Ga0496122_0002011 Ga0496122_0002011_9792_10844 326
258 3300048925 Ga0496122_0045329 Ga0496122_0045329_1017_2084 326
259 3300048926 Ga0496123_0001485 Ga0496123_0001485_9365_10417 326
260 3300049460 Ga0495682_0032574 Ga0495682_0032574_686_1750 326
261 3300053123 Ga0500614_014142 Ga0500614_014142_251_1315 326
262 3300053157 Ga0500624_000197 Ga0500624_000197_20442_21554 326
263 iso_pu_bacteria 2818991444 2819587598 326

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00291

PALP

Pyridoxal-phosphate dependent enzyme

55

346

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
5b53-assembly1.cif.gz_A crystal structure of hydrogen sulfide-producing enzyme (fn1055) from fusobacterium nucleatum 0.9386 16 325
5b55-assembly1.cif.gz_B crystal structure of hydrogen sulfide-producing enzyme (fn1055) d232n mutant in complexed with alpha-aminoacrylate intermediate: lysine-dimethylated form 0.9336 17 317
8b9y-assembly1.cif.gz_B cysteine synthase from trypanosoma cruzi with plp and oas 0.9108 22 276
1o58-assembly1.cif.gz_B crystal structure of o-acetylserine sulfhydrylase (tm0665) from thermotoga maritima at 1.80 a resolution 0.9073 21 276
1fcj-assembly1.cif.gz_A crystal structure of oass complexed with chloride and sulfate 0.901 22 279
ID Description Score Start End Superfamily
5b53A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9824 53 157 3.40.50.1100
3dkiB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9503 53 169 3.40.50.1100
5b53A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9468 53 157 3.40.50.1100
af_Q2G0V4_40_140_3.40.50.1100 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9455 61 161 3.40.50.1100
2jc3H02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9433 56 157 3.40.50.1100
ID Description Score Start End GO Terms
AF-X0X3P0-F1-model_v4 Tryptophan synthase beta chain-like PALP domain-containing protein 0.9915 26 172 GO:0006534
GO:0009069
GO:0044272
AF-A0A645G5I8-F1-model_v4 Cysteine synthase (EC 2.5.1.47) 0.989 11 118 GO:0004124
AF-A0A7Y5S5D7-F1-model_v4 Pyridoxal-phosphate dependent enzyme 0.9794 26 194 GO:0006534
GO:0009069
GO:0044272
AF-X0X3P0-F1-model_v4 Tryptophan synthase beta chain-like PALP domain-containing protein 0.9654 26 172 GO:0006534
GO:0009069
GO:0044272
AF-A0A645G5I8-F1-model_v4 Cysteine synthase (EC 2.5.1.47) 0.9625 11 118 GO:0004124

Feature Viewer

pLDDT pTM Quality
87.76 0.87 High
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Predicted Structure (AlphaFold2)

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