F372933

General Info

Members Datasets Scaffolds Average Seq Length
264 172 494 258

Family's Representative Sequence

Representative Sequence 3300053108|Ga0500562_004022|Ga0500562_004022_2137_3048
Length 303
Sequence MHSRGEKSPSGKSRVHTSRMEGREMPFNSVNTNVGAMVALQNLNATNTELATTQSRINTGKRVGSVKDNGAIWAIAQNQRATSASLNAVKESLQRGQSTVDVAVSAGETVSDLLLQMKEKALAASDTTLDTNSRTALNDDFVSLRDQIAKAVNNADFNGANMVKGVTPTSVAAIANGEGTATITVLAQPMDLGTGALAALGATDSISTQSMASTMISTINTAIINXXXALSKLGTGSKSLASHLSFIAKLQDTVDAGIGNLVDADLAKESAKLQALQTKQQLGIQALSIANQSSSTLLSLFRS

Samples

Sample ID Description Type Environment
1 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
2 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
3 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
4 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
5 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
12 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
13 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
24 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
25 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
28 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
29 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
31 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
32 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
33 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
34 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
40 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
41 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
42 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
43 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
44 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
68 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
69 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
70 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
71 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
72 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
73 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
74 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
75 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
76 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
77 3300041446 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaT Metatranscriptome Rhizoplane
78 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
79 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
80 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
81 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
82 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
83 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
84 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
85 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
86 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
87 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
88 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
89 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
90 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
91 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
92 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
93 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
94 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
95 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
96 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
97 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
98 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
99 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
100 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
101 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
102 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
103 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
104 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
105 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
106 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
107 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
108 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
109 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
110 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
111 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
112 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
113 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
114 3300049527 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
115 3300049530 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
116 3300049539 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
117 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
124 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
125 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
126 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
127 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
128 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
129 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
130 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
131 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
132 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
133 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
134 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
135 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
136 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
137 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
138 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
139 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
140 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
141 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
142 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
143 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
144 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
145 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
146 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
147 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
148 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
149 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
150 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
151 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
152 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
153 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
154 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
155 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
156 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
157 3300053737 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 endosphere Metagenome Endosphere
158 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
159 3300059627 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 154R_AW_T3_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
160 2582581279 Caulobacter henricii OK261 Isolate Rhizosphere
161 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
162 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
163 2643221640 Caulobacter sp. Root342 Isolate Unclassified
164 2643221642 Caulobacter sp. Root343 Isolate Unclassified
165 2791355048 Caulobacter flavus CGMCC1 15093 Isolate Rhizosphere
166 2843744320 Caulobacter flavus RHGG3 Isolate Unclassified
167 2849560528 Caulobacter zeae 410 Isolate Unclassified
168 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
169 2851153111 Caulobacter radicis 736 Isolate Unclassified
170 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
171 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
172 2898329390 Caulobacter sp. 602-2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.18
Metatranscriptomes 1.89
Isolates 4.92

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 24.62
Nodule 0
Rhizoplane 4.17
Rhizosphere 59.85
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500562_004022 3300053108 Bacteria 3707
2 Ga0055530_10006581 3300003791 Bacteria 5150
3 Ga0055531_10001202 3300003794 Bacteria 19850
4 Ga0055543_1016682 3300004625 Bacteria 1393
5 Ga0065165_1011263 3300005262 Bacteria 3753
6 Ga0065165_1013221 3300005262 Bacteria 3298
7 Ga0065165_1023515 3300005262 Bacteria 2087
8 Ga0070690_100333014 3300005330 Bacteria 1097
9 Ga0070670_100039440 3300005331 Bacteria 4061
10 Ga0070670_100041942 3300005331 Bacteria 3933
11 Ga0070670_100106091 3300005331 Bacteria 2421
12 Ga0070670_100184099 3300005331 Bacteria 1814
13 Ga0068868_100105124 3300005338 Bacteria 2289
14 Ga0070668_100009515 3300005347 Bacteria 7209
15 Ga0070668_100124850 3300005347 Bacteria 2061
16 Ga0070669_100001021 3300005353 Bacteria 20402
17 Ga0070671_100000895 3300005355 Bacteria 21726
18 Ga0070674_100061136 3300005356 Bacteria 2628
19 Ga0070673_100489607 3300005364 Bacteria 1111
20 Ga0070667_100005053 3300005367 Bacteria 11038
21 Ga0070667_100140977 3300005367 Bacteria 2111
22 Ga0070667_100196377 3300005367 Bacteria 1789
23 Ga0070667_100452235 3300005367 Bacteria 1174
24 Ga0070662_100020978 3300005457 Bacteria 4456
25 Ga0070665_100001054 3300005548 Bacteria 34499
26 Ga0068855_100462901 3300005563 Bacteria 1382
27 Ga0068859_100000407 3300005617 Bacteria 42783
28 Ga0068864_100004731 3300005618 Bacteria 11147
29 Ga0068864_100149480 3300005618 Bacteria 2115
30 Ga0068863_100000101 3300005841 Bacteria 92384
31 Ga0068863_100014262 3300005841 Bacteria 7655
32 Ga0068863_100020621 3300005841 Bacteria 6299
33 Ga0068858_100001173 3300005842 Bacteria 27188
34 Ga0068858_100009970 3300005842 Bacteria 9021
35 Ga0068862_100004607 3300005844 Bacteria 11619
36 Ga0075364_10002706 3300006051 Bacteria 9956
37 Ga0075367_10000091 3300006178 Bacteria 24634
38 Ga0075369_10000291 3300006186 Bacteria 14885
39 Ga0075366_10026647 3300006195 Bacteria 3387
40 Ga0075366_10119877 3300006195 Bacteria 1585
41 Ga0075370_10033980 3300006353 Bacteria 2857
42 Ga0068865_100230663 3300006881 Bacteria 1452
43 Ga0097620_100000407 3300006931 Bacteria 42783
44 Ga0105250_10004162 3300009092 Bacteria 6710
45 Ga0105247_10037527 3300009101 Bacteria 2956
46 Ga0105247_10125853 3300009101 Bacteria 1665
47 Ga0105241_10552567 3300009174 Bacteria 1034
48 Ga0105242_10106514 3300009176 Bacteria 2382
49 Ga0105248_10000349 3300009177 Bacteria 54104
50 Ga0105248_10028461 3300009177 Bacteria 6225
51 Ga0105248_10061011 3300009177 Bacteria 4233
52 Ga0105248_10187348 3300009177 Bacteria 2332
53 Ga0105248_10216654 3300009177 Bacteria 2156
54 Ga0105238_10195679 3300009551 Bacteria 1997
55 Ga0105249_10131798 3300009553 Bacteria 2387
56 Ga0105249_10836174 3300009553 Bacteria 986
57 Ga0157374_10305237 3300013296 Bacteria 1575
58 Ga0163162_10009921 3300013306 Bacteria 9262
59 Ga0163162_10035438 3300013306 Bacteria 4971
60 Ga0163162_10228743 3300013306 Bacteria 1990
61 Ga0163163_10005243 3300014325 Bacteria 11177
62 Ga0163163_10046512 3300014325 Bacteria 4262
63 Ga0163163_10088957 3300014325 Bacteria 3100
64 Ga0157377_10160386 3300014745 Bacteria 1398
65 Ga0157377_10178254 3300014745 Bacteria 1334
66 Ga0157379_10000119 3300014968 Bacteria 54670
67 Ga0157379_10034503 3300014968 Bacteria 4511
68 Ga0157379_10289493 3300014968 Bacteria 1491
69 Ga0209026_1000438 3300025250 Bacteria 34415
70 Ga0209026_1003188 3300025250 Bacteria 5555
71 Ga0209758_1002163 3300025297 Bacteria 20648
72 Ga0209050_1000031 3300025298 Bacteria 458181
73 Ga0209256_1003858 3300025299 Bacteria 9990
74 Ga0209257_1000073 3300025304 Bacteria 325833
75 Ga0209257_1047409 3300025304 Bacteria 1236
76 Ga0207642_10166780 3300025899 Bacteria 1188
77 Ga0207710_10026661 3300025900 Bacteria 2498
78 Ga0207710_10031158 3300025900 Bacteria 2331
79 Ga0207705_10415875 3300025909 Bacteria 1041
80 Ga0207681_10010227 3300025923 Bacteria 5745
81 Ga0207694_10124873 3300025924 Bacteria 2058
82 Ga0207650_10048468 3300025925 Bacteria 3133
83 Ga0207650_10051942 3300025925 Bacteria 3035
84 Ga0207650_10090808 3300025925 Bacteria 2333
85 Ga0207644_10000679 3300025931 Bacteria 21492
86 Ga0207644_10001035 3300025931 Bacteria 17819
87 Ga0207644_10019204 3300025931 Bacteria 4634
88 Ga0207706_10021064 3300025933 Bacteria 5856
89 Ga0207704_10545567 3300025938 Bacteria 941
90 Ga0207711_10002092 3300025941 Bacteria 18020
91 Ga0207711_10004911 3300025941 Bacteria 11354
92 Ga0207711_10015347 3300025941 Bacteria 6358
93 Ga0207711_10033880 3300025941 Bacteria 4324
94 Ga0207711_10141504 3300025941 Bacteria 2165
95 Ga0207667_10163315 3300025949 Bacteria 2290
96 Ga0207712_10100575 3300025961 Bacteria 2148
97 Ga0207668_10000007 3300025972 Bacteria 190613
98 Ga0207668_10016949 3300025972 Bacteria 4558
99 Ga0207658_10008069 3300025986 Bacteria 7174
100 Ga0207658_10027513 3300025986 Bacteria 3995
101 Ga0207658_10150492 3300025986 Bacteria 1895
102 Ga0207658_10199812 3300025986 Bacteria 1668
103 Ga0207658_10208573 3300025986 Bacteria 1636
104 Ga0207703_10000105 3300026035 Bacteria 99702
105 Ga0207703_10002868 3300026035 Bacteria 14676
106 Ga0207703_10016005 3300026035 Bacteria 5848
107 Ga0207703_10411742 3300026035 Bacteria 1256
108 Ga0207641_10000160 3300026088 Bacteria 95407
109 Ga0207641_10001755 3300026088 Bacteria 20884
110 Ga0207641_10002563 3300026088 Bacteria 16724
111 Ga0207641_10002888 3300026088 Bacteria 15554
112 Ga0207641_10040514 3300026088 Bacteria 3901
113 Ga0207676_10000380 3300026095 Bacteria 37876
114 Ga0207676_10003296 3300026095 Bacteria 11468
115 Ga0268266_10002189 3300028379 Bacteria 21374
116 Ga0268266_10051011 3300028379 Bacteria 3551
117 Ga0268265_10013957 3300028380 Bacteria 5470
118 Ga0268265_10076157 3300028380 Bacteria 2631
119 Ga0268264_10011304 3300028381 Bacteria 7374
120 Ga0307517_10013485 3300028786 Bacteria 11088
121 Ga0307517_10080912 3300028786 Bacteria 2776
122 Ga0307515_10262846 3300028794 Bacteria 1459
123 Ga0265338_10293404 3300028800 Bacteria 1184
124 Ga0307511_10110787 3300030521 Bacteria 1748
125 Ga0265327_10007151 3300031251 Bacteria 8702
126 Ga0307513_10000082 3300031456 Bacteria 131779
127 Ga0307513_10001556 3300031456 Bacteria 32890
128 Ga0307513_10005321 3300031456 Bacteria 17020
129 Ga0373925_0267397 3300037068 Bacteria 1375
130 Ga0395898_0288005 3300037466 Bacteria 1567
131 Ga0395905_0354108 3300037471 Bacteria 1360
132 Ga0439461_0032577 3300041410 Bacteria 1093
133 Ga0451794_06025 3300041446 Bacteria 894
134 Ga0451807_0423497 3300041486 Bacteria 1130
135 Ga0451807_1955058 3300041486 Bacteria 1475
136 Ga0439445_0046545 3300042004 Bacteria 1163
137 Ga0466957_0241451 3300044842 Bacteria 1199
138 Ga0466960_0171550 3300044901 Bacteria 1171
139 Ga0495629_0110200 3300046459 Bacteria 1919
140 Ga0495583_0063497 3300046506 Bacteria 1641
141 Ga0495610_0044178 3300046512 Bacteria 2214
142 Ga0495620_0041484 3300046515 Bacteria 2018
143 Ga0495620_0077705 3300046515 Bacteria 1347
144 Ga0495643_0025778 3300046522 Bacteria 3324
145 Ga0495643_0125672 3300046522 Bacteria 1292
146 Ga0495648_0005500 3300046524 Bacteria 10507
147 Ga0495597_0003822 3300046542 Bacteria 8565
148 Ga0495597_0059480 3300046542 Bacteria 1668
149 Ga0495622_0036967 3300046557 Bacteria 2275
150 Ga0495668_0000019 3300046616 Bacteria 416042
151 Ga0495625_0060210 3300046660 Bacteria 2690
152 Ga0495625_0092924 3300046660 Bacteria 2084
153 Ga0495625_0130726 3300046660 Bacteria 1701
154 Ga0495669_0280159 3300046684 Bacteria 802
155 Ga0495649_0102449 3300046694 Bacteria 1521
156 Ga0495672_0191501 3300047320 Bacteria 1028
157 Ga0495687_008987 3300047443 Bacteria 5649
158 Ga0495677_0077332 3300047445 Bacteria 1245
159 Ga0495673_0000123 3300047469 Bacteria 144484
160 Ga0495686_0003065 3300047472 Bacteria 14814
161 Ga0495602_0145608 3300048088 Bacteria 1870
162 Ga0496102_0095107 3300048905 Bacteria 2761
163 Ga0496102_0489255 3300048905 Bacteria 1152
164 Ga0496103_0136394 3300048906 Bacteria 1568
165 Ga0496106_0257208 3300048909 Bacteria 1397
166 Ga0496108_0292410 3300048911 Bacteria 1418
167 Ga0496109_0071846 3300048912 Bacteria 3178
168 Ga0496113_0017334 3300048916 Bacteria 4997
169 Ga0496114_0450946 3300048917 Bacteria 1139
170 Ga0496116_0095249 3300048919 Bacteria 1797
171 Ga0496117_0015335 3300048920 Bacteria 6539
172 Ga0496118_0001885 3300048921 Bacteria 29936
173 Ga0496118_0005066 3300048921 Bacteria 15171
174 Ga0496119_0003951 3300048922 Bacteria 15019
175 Ga0496119_0008349 3300048922 Bacteria 9124
176 Ga0496121_0000009 3300048924 Bacteria 836971
177 Ga0496124_0024928 3300048927 Bacteria 5427
178 Ga0496126_0000817 3300048929 Bacteria 55573
179 Ga0501311_012403 3300049527 Bacteria 1063
180 Ga0501314_008497 3300049530 Bacteria 929
181 Ga0501323_011582 3300049539 Bacteria 1066
182 Ga0501033_0001860 3300049570 Bacteria 18348
183 Ga0501034_0080137 3300049571 Bacteria 3268
184 Ga0501036_0498488 3300049572 Bacteria 1013
185 Ga0501037_0027669 3300049573 Bacteria 4190
186 Ga0501043_0329514 3300049579 Bacteria 1163
187 Ga0501035_0447488 3300049822 Bacteria 1069
188 Ga0501044_0019831 3300049823 Bacteria 7182
189 Ga0501044_0325566 3300049823 Bacteria 1460
190 nmdc:mga03n38_11745_c1 3300050490 Bacteria 3273
191 nmdc:mga00v17_282_c1 3300050491 Bacteria 30074
192 nmdc:mga0yw44_298713_c1 3300050492 Bacteria 1079
193 nmdc:mga0k408_23738_c1 3300050493 Bacteria 3463
194 nmdc:mga0k408_66170_c1 3300050493 Bacteria 2105
195 nmdc:mga06z11_3147_c1 3300050494 Bacteria 6370
196 nmdc:mga07m45_20311_c1 3300050496 Bacteria 3607
197 nmdc:mga07m45_29432_c1 3300050496 Bacteria 3037
198 nmdc:mga0sz30_13312_c1 3300050516 Bacteria 3219
199 Ga0500635_0000052 3300053080 Bacteria 75372
200 Ga0500635_0000602 3300053080 Bacteria 9479
201 Ga0500578_0073562 3300053086 Bacteria 2177
202 Ga0500643_022290 3300053087 Bacteria 2040
203 Ga0500643_023849 3300053087 Bacteria 1950
204 Ga0500644_0000817 3300053088 Bacteria 10508
205 Ga0500647_0038197 3300053091 Bacteria 2299
206 Ga0500583_0040463 3300053092 Bacteria 2112
207 Ga0500651_0024420 3300053093 Bacteria 3790
208 Ga0500566_0061161 3300053094 Bacteria 2132
209 Ga0500650_0094570 3300053098 Bacteria 1399
210 Ga0500555_006498 3300053103 Bacteria 3323
211 Ga0500556_0063781 3300053104 Bacteria 1362
212 Ga0500562_003294 3300053108 Bacteria 4033
213 Ga0500569_000748 3300053109 Bacteria 5679
214 Ga0500595_001416 3300053119 Bacteria 12876
215 Ga0500595_002474 3300053119 Bacteria 9140
216 Ga0500595_056877 3300053119 Bacteria 1193
217 Ga0500607_109608 3300053121 Bacteria 1356
218 Ga0500614_011796 3300053123 Bacteria 1898
219 Ga0500642_0134067 3300053130 Bacteria 1161
220 Ga0500564_005105 3300053138 Bacteria 5337
221 Ga0500573_0016788 3300053140 Bacteria 4161
222 Ga0500603_017518 3300053150 Bacteria 1713
223 Ga0500616_0040133 3300053153 Bacteria 2519
224 Ga0500622_0011778 3300053156 Bacteria 4754
225 Ga0500624_002657 3300053157 Bacteria 2388
226 Ga0500636_0007984 3300053177 Bacteria 6123
227 Ga0500625_013839 3300053729 Bacteria 3716
228 Ga0500645_005964 3300053730 Bacteria 4407
229 Ga0500645_007303 3300053730 Bacteria 3862
230 Ga0500645_028804 3300053730 Bacteria 1679
231 Ga0500596_002691 3300053735 Bacteria 3485
232 Ga0500601_009236 3300053737 Bacteria 1099
233 Ga0500661_029273 3300055283 Bacteria 972
234 Ga0587117_014740 3300059627 Bacteria 1019
235 2585150215 2582581279 Bacteria 4980720
236 2587916375 2585428106 Bacteria 5179711
237 2643779109 2643221552 Bacteria 5708754
238 2644226116 2643221640 Bacteria 5258820
239 2644235604 2643221642 Bacteria 5357871
240 2792463648 2791355048 Bacteria 5832535
241 2843748441 2843744320 Bacteria 5659202
242 2849562346 2849560528 Bacteria 5393480
243 2849574603 2849573788 Bacteria 5421256
244 2851155045 2851153111 Bacteria 5542585
245 2857509058 2857504554 Bacteria 5369913
246 2884964900 2884960567 Bacteria 5437054
247 2898330055 2898329390 Bacteria 5168154
248 Ga0500562_004022
249 Ga0055530_10006581
250 Ga0055531_10001202
251 Ga0055543_1016682
252 Ga0065165_1011263
253 Ga0065165_1013221
254 Ga0065165_1023515
255 Ga0070690_100333014
256 Ga0070670_100039440
257 Ga0070670_100041942
258 Ga0070670_100106091
259 Ga0070670_100184099
260 Ga0068868_100105124
261 Ga0070668_100009515
262 Ga0070668_100124850
263 Ga0070669_100001021
264 Ga0070671_100000895
265 Ga0070674_100061136
266 Ga0070673_100489607
267 Ga0070667_100005053
268 Ga0070667_100140977
269 Ga0070667_100196377
270 Ga0070667_100452235
271 Ga0070662_100020978
272 Ga0070665_100001054
273 Ga0068855_100462901
274 Ga0068859_100000407
275 Ga0068864_100004731
276 Ga0068864_100149480
277 Ga0068863_100000101
278 Ga0068863_100014262
279 Ga0068863_100020621
280 Ga0068858_100001173
281 Ga0068858_100009970
282 Ga0068862_100004607
283 Ga0075364_10002706
284 Ga0075367_10000091
285 Ga0075369_10000291
286 Ga0075366_10026647
287 Ga0075366_10119877
288 Ga0075370_10033980
289 Ga0068865_100230663
290 Ga0097620_100000407
291 Ga0105250_10004162
292 Ga0105247_10037527
293 Ga0105247_10125853
294 Ga0105241_10552567
295 Ga0105242_10106514
296 Ga0105248_10000349
297 Ga0105248_10028461
298 Ga0105248_10061011
299 Ga0105248_10187348
300 Ga0105248_10216654
301 Ga0105238_10195679
302 Ga0105249_10131798
303 Ga0105249_10836174
304 Ga0157374_10305237
305 Ga0163162_10009921
306 Ga0163162_10035438
307 Ga0163162_10228743
308 Ga0163163_10005243
309 Ga0163163_10046512
310 Ga0163163_10088957
311 Ga0157377_10160386
312 Ga0157377_10178254
313 Ga0157379_10000119
314 Ga0157379_10034503
315 Ga0157379_10289493
316 Ga0209026_1000438
317 Ga0209026_1003188
318 Ga0209758_1002163
319 Ga0209050_1000031
320 Ga0209256_1003858
321 Ga0209257_1000073
322 Ga0209257_1047409
323 Ga0207642_10166780
324 Ga0207710_10026661
325 Ga0207710_10031158
326 Ga0207705_10415875
327 Ga0207681_10010227
328 Ga0207694_10124873
329 Ga0207650_10048468
330 Ga0207650_10051942
331 Ga0207650_10090808
332 Ga0207644_10000679
333 Ga0207644_10001035
334 Ga0207644_10019204
335 Ga0207706_10021064
336 Ga0207704_10545567
337 Ga0207711_10002092
338 Ga0207711_10004911
339 Ga0207711_10015347
340 Ga0207711_10033880
341 Ga0207711_10141504
342 Ga0207667_10163315
343 Ga0207712_10100575
344 Ga0207668_10000007
345 Ga0207668_10016949
346 Ga0207658_10008069
347 Ga0207658_10027513
348 Ga0207658_10150492
349 Ga0207658_10199812
350 Ga0207658_10208573
351 Ga0207703_10000105
352 Ga0207703_10002868
353 Ga0207703_10016005
354 Ga0207703_10411742
355 Ga0207641_10000160
356 Ga0207641_10001755
357 Ga0207641_10002563
358 Ga0207641_10002888
359 Ga0207641_10040514
360 Ga0207676_10000380
361 Ga0207676_10003296
362 Ga0268266_10002189
363 Ga0268266_10051011
364 Ga0268265_10013957
365 Ga0268265_10076157
366 Ga0268264_10011304
367 Ga0307517_10013485
368 Ga0307517_10080912
369 Ga0307515_10262846
370 Ga0265338_10293404
371 Ga0307511_10110787
372 Ga0265327_10007151
373 Ga0307513_10000082
374 Ga0307513_10001556
375 Ga0307513_10005321
376 Ga0373925_0267397
377 Ga0395898_0288005
378 Ga0395905_0354108
379 Ga0439461_0032577
380 Ga0451794_06025
381 Ga0451807_0423497
382 Ga0451807_1955058
383 Ga0439445_0046545
384 Ga0466957_0241451
385 Ga0466960_0171550
386 Ga0495629_0110200
387 Ga0495583_0063497
388 Ga0495610_0044178
389 Ga0495620_0041484
390 Ga0495620_0077705
391 Ga0495643_0025778
392 Ga0495643_0125672
393 Ga0495648_0005500
394 Ga0495597_0003822
395 Ga0495597_0059480
396 Ga0495622_0036967
397 Ga0495668_0000019
398 Ga0495625_0060210
399 Ga0495625_0092924
400 Ga0495625_0130726
401 Ga0495669_0280159
402 Ga0495649_0102449
403 Ga0495672_0191501
404 Ga0495687_008987
405 Ga0495677_0077332
406 Ga0495673_0000123
407 Ga0495686_0003065
408 Ga0495602_0145608
409 Ga0496102_0095107
410 Ga0496102_0489255
411 Ga0496103_0136394
412 Ga0496106_0257208
413 Ga0496108_0292410
414 Ga0496109_0071846
415 Ga0496113_0017334
416 Ga0496114_0450946
417 Ga0496116_0095249
418 Ga0496117_0015335
419 Ga0496118_0001885
420 Ga0496118_0005066
421 Ga0496119_0003951
422 Ga0496119_0008349
423 Ga0496121_0000009
424 Ga0496124_0024928
425 Ga0496126_0000817
426 Ga0501311_012403
427 Ga0501314_008497
428 Ga0501323_011582
429 Ga0501033_0001860
430 Ga0501034_0080137
431 Ga0501036_0498488
432 Ga0501037_0027669
433 Ga0501043_0329514
434 Ga0501035_0447488
435 Ga0501044_0019831
436 Ga0501044_0325566
437 nmdc:mga03n38_11745_c1
438 nmdc:mga00v17_282_c1
439 nmdc:mga0yw44_298713_c1
440 nmdc:mga0k408_23738_c1
441 nmdc:mga0k408_66170_c1
442 nmdc:mga06z11_3147_c1
443 nmdc:mga07m45_20311_c1
444 nmdc:mga07m45_29432_c1
445 nmdc:mga0sz30_13312_c1
446 Ga0500635_0000052
447 Ga0500635_0000602
448 Ga0500578_0073562
449 Ga0500643_022290
450 Ga0500643_023849
451 Ga0500644_0000817
452 Ga0500647_0038197
453 Ga0500583_0040463
454 Ga0500651_0024420
455 Ga0500566_0061161
456 Ga0500650_0094570
457 Ga0500555_006498
458 Ga0500556_0063781
459 Ga0500562_003294
460 Ga0500569_000748
461 Ga0500595_001416
462 Ga0500595_002474
463 Ga0500595_056877
464 Ga0500607_109608
465 Ga0500614_011796
466 Ga0500642_0134067
467 Ga0500564_005105
468 Ga0500573_0016788
469 Ga0500603_017518
470 Ga0500616_0040133
471 Ga0500622_0011778
472 Ga0500624_002657
473 Ga0500636_0007984
474 Ga0500625_013839
475 Ga0500645_005964
476 Ga0500645_007303
477 Ga0500645_028804
478 Ga0500596_002691
479 Ga0500601_009236
480 Ga0500661_029273
481 Ga0587117_014740
482 2585150215
483 2587916375
484 2643779109
485 2644226116
486 2644235604
487 2792463648
488 2843748441
489 2849562346
490 2849574603
491 2851155045
492 2857509058
493 2884964900
494 2898330055

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00669

Flagellin_N

Bacterial flagellin N-terminal helical region

30

167

0.99

PF00700

Flagellin_C

Bacterial flagellin C-terminal helical region

216

301

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
2zbi-assembly1.cif.gz_A crystal structure of a bacterial cell-surface flagellin 0.9366 64 161
3v47-assembly1.cif.gz_C crystal structure of the n-terminal fragment of zebrafish tlr5 in complex with salmonella flagellin 0.9082 66 165
6ff7-assembly1.cif.gz_w human bact spliceosome core structure 0.8995 80 126
1io1-assembly1.cif.gz_A crystal structure of f41 fragment of flagellin 0.8991 58 165
6dkm-assembly1.cif.gz_A dhd131 0.8944 69 130
ID Description Score Start End Superfamily
af_Q69ZQ2_38_95_1.10.287.660 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9236 80 130 1.10.287.660
3k8vB01 Mainly Alpha;Up-down Bundle;f41 fragment of flagellin, N-terminal domain;f41 fragment of flagellin, N-terminal domain 0.8538 46 241 1.20.1330.10
af_I1MBN1_1_408_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8284 68 128 1.25.40.10
af_Q69ZQ2_38_95_1.10.287.660 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.8071 80 130 1.10.287.660
3k8vB01 Mainly Alpha;Up-down Bundle;f41 fragment of flagellin, N-terminal domain;f41 fragment of flagellin, N-terminal domain 0.7948 46 241 1.20.1330.10
ID Description Score Start End GO Terms
AF-A0A2D7Y5H5-F1-model_v4 Flagellin 0.9175 29 219 GO:0005198
GO:0005576
GO:0009288
AF-A0A3C2E4F7-F1-model_v4 Flagellin 0.8634 1 220 GO:0005198
GO:0005576
GO:0009288
AF-A0A5C8KZA6-F1-model_v4 deleted 0.8576 9 165
AF-A0A2H0PLD5-F1-model_v4 Flagellin 0.8444 11 165 GO:0005198
GO:0005576
GO:0009288
AF-A0A6A8QLD2-F1-model_v4 Flagellin 0.8432 9 261

Map