F373002

General Info

Members Datasets Scaffolds Average Seq Length
264 225 528 297

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8016522445|8016529137
Length 346
Sequence TTFLAVARERSFTKAAAQLRLSPSSLSHTIRGMEERLGVRLLTRTTRSVSLTDAGERLLQTVGPHFEEIDSALSALTELRDKPAGSVRITAGEHAAVAVIWPTVETLLPDYPDIKVEIIIDHGFTDIVAERFDAGVRLGEEVDKDMIAVPIGPEMRMAVIGTPSYFARHPKPLTPQDLTAHRCINIRLPTFGGFHAWEFEKDGRELRVRVDGPLAFNGSRLALAAARSGAGLAYLFEEPCPGGYCRRPPDARPVRLVSVVFRLSSLLSKPPATLASLRRFGGRFAASINHRKLRFLIVAIEETSNSRDDPPAQFVIVTQLLGKSALCHWSSSSLHSHATRAPQRRR

Samples

Sample ID Description Type Environment
1 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
2 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
3 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
4 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
5 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
6 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
7 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
8 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
9 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
10 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
20 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
32 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
33 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
36 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
37 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
38 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
40 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
43 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
47 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
48 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
49 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
50 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
51 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
52 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
53 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
54 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
55 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
56 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
58 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
59 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
60 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
61 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
62 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
65 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
97 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
100 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
101 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
102 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
103 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
104 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
105 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
106 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
107 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
108 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
109 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
110 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
111 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
112 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
113 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
114 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
115 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
116 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
117 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
118 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
119 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
120 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
121 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
122 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
123 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
124 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
125 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
126 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
127 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
128 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
129 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
130 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
131 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
132 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
133 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
134 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
135 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
136 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
137 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
138 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
139 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
140 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
141 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
142 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
143 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
144 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
145 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
146 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
147 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
148 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
149 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
150 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
151 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
152 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
153 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
154 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
155 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
156 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
157 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
158 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
159 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
160 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
161 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
162 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
163 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
164 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
165 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
166 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
167 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
168 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
169 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
170 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
171 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
172 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
173 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
174 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
175 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
176 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
177 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
178 8016522445 Bradyrhizobium sp. LM6.9 Isolate Nodule
179 2503198000 Mesorhizobium opportunistum WSM2075 Isolate Nodule
180 2508501071 Serratia proteamaculans S4 Isolate Rhizosphere
181 2510917020 Caulobacter sp. AP07 Isolate Rhizosphere
182 2510917030 Rhizobium sp. CF142 Isolate Rhizosphere
183 2582581306 Rhizobium sp. YR295 Isolate Rhizosphere
184 2582581865 Rhizobium sp. CF258 Isolate Rhizosphere
185 2585427530 Rhizobium tropici YR635 Isolate Rhizosphere
186 2585427591 Rahnella aquatilis OV744 Isolate Rhizosphere
187 2585427592 Rahnella aquatilis OV588 Isolate Rhizosphere
188 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
189 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
190 2718217927 Rhizobium sp. N324 Isolate Nodule
191 2718218423 Rhizobium sp. N941 Isolate Nodule
192 2721755809 Rhizobium sp. N541 Isolate Nodule
193 2738543024 Aminobacter sp. AP02 Isolate Unclassified
194 2791355266 Rhizobium sp. L43 Isolate Nodule
195 2802429634 Rhizobium anhuiense S10 Isolate Nodule
196 2802429635 Rhizobium anhuiense Y27 Isolate Nodule
197 2806310673 Serratia quinivorans NCTC 13189 Isolate Rhizosphere
198 2869169390 Mesorhizobium sp. M7A.F.Ca.CA.001.10.2.1 Isolate Nodule
199 2891670763 Buttiauxella sp. B2 Isolate Rhizosphere
200 2904504865 Serratia marcescens 1822 Isolate Unclassified
201 2904699407
202 2906401398 Mesorhizobium sp. M7A.F.Ca.CA.004.10.1.1 Isolate Nodule
203 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
204 2909399089 Nguyenibacter vanlangensis LMG 31431 Isolate Unclassified
205 2923556063 Rhizobium tibeticum 3740 Isolate Unclassified
206 2977922695 Mesorhizobium sp. WSM4305 Isolate Unclassified
207 3004211236 Mesorhizobium sp. WSM4307 Isolate Unclassified
208 3004218560 Mesorhizobium sp. WSM4315 Isolate Unclassified
209 640753048 Serratia proteamaculans 568 Isolate Endosphere
210 8004312739 Mesorhizobium sp. M7A.F.Ca.MR.362.00.0.0 Isolate Nodule
211 8005275841 Rhizobium sp. N4311 Isolate Nodule
212 8005556819 Rhizobium sp. WYCCWR 11128 Isolate Nodule
213 8005563573 Rhizobium sp. WYCCWR 11152 Isolate Nodule
214 8005570704 Rhizobium anhuiense bv. trifolii WYCCWR10015 Isolate Nodule
215 8016530956 Bradyrhizobium sp. LM6.11 Isolate Nodule
216 8016539877 Bradyrhizobium sp. LM6.10 Isolate Nodule
217 8016548790 Bradyrhizobium sp. LM3.6 Isolate Nodule
218 8016575299 Bradyrhizobium sp. LM2.9 Isolate Nodule
219 8016595262 Bradyrhizobium sp. LM2.3 Isolate Nodule
220 8016622563 Bradyrhizobium sp. LB13.1 Isolate Nodule
221 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
222 8018163183 Rhizobium sp. WYCCWR 11146 Isolate Nodule
223 8019530166 Bradyrhizobium sp. LM4.3 Isolate Nodule
224 8019547302 Bradyrhizobium sp. LB1.3 Isolate Nodule
225 8054849141 Dryocola clanedunensis H11S18 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 81.75
Metatranscriptomes 0
Isolates 18.25

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.15
Nodule 9.85
Rhizoplane 2.65
Rhizosphere 61.74
Stem 0
Stem Tuber 0
Unclassified 0.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1001952 3300002737 Bacteria 9287
2 JGI25157J39369_1000878 3300002741 Bacteria 14511
3 JGI25164J39214_1000528 3300002772 Bacteria 18024
4 JGI25153J46596_10007454 3300003215 Bacteria 5380
5 Ga0055526_1003967 3300003771 Bacteria 9118
6 Ga0055524_1023135 3300003775 Bacteria 2008
7 Ga0055528_1000269 3300003790 Bacteria 44061
8 Ga0055540_1000510 3300003792 Bacteria 29334
9 Ga0070676_10051562 3300005328 Bacteria 2416
10 Ga0070670_100332352 3300005331 Bacteria 1333
11 Ga0068869_100062874 3300005334 Bacteria 2725
12 Ga0068869_100064704 3300005334 Bacteria 2690
13 Ga0068869_100073870 3300005334 Bacteria 2530
14 Ga0070675_100023869 3300005354 Bacteria 4895
15 Ga0070675_100041523 3300005354 Bacteria 3757
16 Ga0070674_100016592 3300005356 Bacteria 4617
17 Ga0070659_100004281 3300005366 Bacteria 10189
18 Ga0070708_100124781 3300005445 Bacteria 2378
19 Ga0070678_100017235 3300005456 Bacteria 4644
20 Ga0070698_100532283 3300005471 Bacteria 1114
21 Ga0068853_100225075 3300005539 Bacteria 1714
22 Ga0070672_100007036 3300005543 Bacteria 7608
23 Ga0070696_100001973 3300005546 Bacteria 13468
24 Ga0070665_100001969 3300005548 Bacteria 23093
25 Ga0068855_100010677 3300005563 Bacteria 11082
26 Ga0068857_100010699 3300005577 Bacteria 7983
27 Ga0068856_100000201 3300005614 Bacteria 63742
28 Ga0068856_100716782 3300005614 Bacteria 1021
29 Ga0068852_100021920 3300005616 Bacteria 5111
30 Ga0068861_100248574 3300005719 Bacteria 1516
31 Ga0068860_100179880 3300005843 Bacteria 2044
32 Ga0068862_100077650 3300005844 Bacteria 2876
33 Ga0068862_100091048 3300005844 Bacteria 2656
34 Ga0081540_1001861 3300005983 Bacteria 17661
35 Ga0070717_10368761 3300006028 Bacteria 1286
36 Ga0075365_10000975 3300006038 Bacteria 12193
37 Ga0075367_10028346 3300006178 Bacteria 3194
38 Ga0075367_10318593 3300006178 Bacteria 980
39 Ga0075369_10114781 3300006186 Bacteria 1216
40 Ga0075428_100106255 3300006844 Bacteria 3060
41 Ga0075430_100125923 3300006846 Bacteria 2135
42 Ga0075431_100052353 3300006847 Bacteria 4210
43 Ga0075431_100769639 3300006847 Bacteria 937
44 Ga0075429_100057999 3300006880 Bacteria 3372
45 Ga0097620_100032815 3300006931 Bacteria 5217
46 Ga0105251_10002947 3300009011 Bacteria 12757
47 Ga0105250_10000046 3300009092 Bacteria 126280
48 Ga0111539_10534890 3300009094 Bacteria 1365
49 Ga0105243_10258074 3300009148 Bacteria 1559
50 Ga0105241_10007828 3300009174 Bacteria 7857
51 Ga0105237_10004443 3300009545 Bacteria 16242
52 Ga0105238_10193543 3300009551 Bacteria 2009
53 Ga0105249_10276968 3300009553 Bacteria 1674
54 Ga0105249_10516459 3300009553 Bacteria 1241
55 Ga0105239_10024329 3300010375 Bacteria 6671
56 Ga0105239_10373690 3300010375 Bacteria 1611
57 Ga0157370_10108087 3300013104 Bacteria 2601
58 Ga0157369_10036586 3300013105 Bacteria 5377
59 Ga0157375_10339115 3300013308 Bacteria 1668
60 Ga0163163_10040952 3300014325 Bacteria 4527
61 Ga0163163_10145805 3300014325 Bacteria 2411
62 Ga0157380_10105994 3300014326 Bacteria 2351
63 Ga0182008_10017131 3300014497 Bacteria 3760
64 Ga0157379_10131474 3300014968 Bacteria 2253
65 Ga0182007_10005298 3300015262 Bacteria 5689
66 Ga0209674_101357 3300025226 Bacteria 6672
67 Ga0207427_100044 3300025231 Bacteria 242623
68 Ga0207427_100088 3300025231 Bacteria 137220
69 Ga0209437_100005 3300025233 Bacteria 1071596
70 Ga0209026_1000010 3300025250 Bacteria 511986
71 Ga0209759_1004684 3300025256 Bacteria 5012
72 Ga0209233_1000011 3300025261 Bacteria 1071611
73 Ga0209233_1000969 3300025261 Bacteria 12368
74 Ga0209673_1000013 3300025273 Bacteria 571633
75 Ga0209564_1000264 3300025295 Bacteria 111404
76 Ga0209758_1004808 3300025297 Bacteria 10908
77 Ga0209758_1064228 3300025297 Bacteria 1191
78 Ga0209050_1005417 3300025298 Bacteria 8041
79 Ga0209256_1000369 3300025299 Bacteria 72557
80 Ga0209051_1000142 3300025303 Bacteria 135337
81 Ga0209051_1005355 3300025303 Bacteria 7536
82 Ga0207656_10094939 3300025321 Bacteria 1359
83 Ga0207696_1000037 3300025711 Bacteria 334893
84 Ga0207713_1004085 3300025735 Bacteria 9621
85 Ga0207688_10101715 3300025901 Bacteria 1660
86 Ga0207647_10000020 3300025904 Bacteria 123888
87 Ga0207643_10046839 3300025908 Bacteria 2444
88 Ga0207654_10043680 3300025911 Bacteria 2542
89 Ga0207695_10000008 3300025913 Bacteria 1058268
90 Ga0207671_10002506 3300025914 Bacteria 19597
91 Ga0207657_10007142 3300025919 Bacteria 11470
92 Ga0207687_10049601 3300025927 Bacteria 2919
93 Ga0207690_10044722 3300025932 Bacteria 2920
94 Ga0207706_10115263 3300025933 Bacteria 2363
95 Ga0207709_10058477 3300025935 Bacteria 2396
96 Ga0207709_10345737 3300025935 Bacteria 1121
97 Ga0207669_10006813 3300025937 Bacteria 5252
98 Ga0207689_10003862 3300025942 Bacteria 13656
99 Ga0207689_10269593 3300025942 Bacteria 1409
100 Ga0207667_10201652 3300025949 Bacteria 2041
101 Ga0207668_10170467 3300025972 Bacteria 1706
102 Ga0207668_10399215 3300025972 Bacteria 1162
103 Ga0207658_10058797 3300025986 Bacteria 2862
104 Ga0207658_10217270 3300025986 Unclassified 1606
105 Ga0207703_10448779 3300026035 Bacteria 1204
106 Ga0207639_10075213 3300026041 Bacteria 2655
107 Ga0207708_10196230 3300026075 Bacteria 1609
108 Ga0207702_10000666 3300026078 Bacteria 37333
109 Ga0207648_10343731 3300026089 Bacteria 1344
110 Ga0207676_10520847 3300026095 Bacteria 1132
111 Ga0207674_10002015 3300026116 Bacteria 25797
112 Ga0207675_100076156 3300026118 Bacteria 3141
113 Ga0207683_10009468 3300026121 Bacteria 8301
114 Ga0209813_10045398 3300027866 Bacteria 1353
115 Ga0268266_10003005 3300028379 Bacteria 17351
116 Ga0268266_10179788 3300028379 Bacteria 1925
117 Ga0268264_10052798 3300028381 Bacteria 3390
118 Ga0265328_10015756 3300031239 Bacteria 2956
119 Ga0307513_10010966 3300031456 Bacteria 11310
120 Ga0265313_10000194 3300031595 Bacteria 65054
121 Ga0307405_10121213 3300031731 Bacteria 1790
122 Ga0307413_10170191 3300031824 Bacteria 1541
123 Ga0307413_10314820 3300031824 Bacteria 1193
124 Ga0307406_10221507 3300031901 Bacteria 1406
125 Ga0307412_10358425 3300031911 Bacteria 1173
126 Ga0307411_10533721 3300032005 Bacteria 998
127 Ga0307510_10202199 3300033180 Bacteria 1520
128 Ga0373927_0001173 3300035695 Bacteria 19846
129 Ga0395898_0011893 3300037466 Bacteria 9012
130 Ga0395901_0004382 3300038443 Bacteria 14239
131 Ga0466959_0138594 3300045049 Bacteria 1721
132 Ga0495629_0086113 3300046459 Bacteria 2192
133 Ga0495638_0000399 3300046460 Bacteria 53351
134 Ga0495639_0016504 3300046475 Bacteria 3207
135 Ga0495662_0003738 3300046476 Bacteria 7671
136 Ga0495584_0177368 3300046491 Bacteria 1083
137 Ga0495594_0074987 3300046499 Bacteria 1885
138 Ga0495596_0000078 3300046500 Bacteria 67709
139 Ga0495583_0030323 3300046506 Bacteria 2635
140 Ga0495610_0000040 3300046512 Bacteria 165165
141 Ga0495616_0007637 3300046513 Bacteria 6469
142 Ga0495632_0161843 3300046519 Bacteria 1031
143 Ga0495637_0010189 3300046520 Bacteria 4556
144 Ga0495643_0050040 3300046522 Bacteria 2251
145 Ga0495644_0064576 3300046523 Bacteria 1376
146 Ga0495666_0089304 3300046526 Bacteria 1455
147 Ga0495654_0000066 3300046530 Bacteria 126103
148 Ga0495654_0007132 3300046530 Bacteria 6281
149 Ga0495598_0037768 3300046537 Bacteria 1395
150 Ga0495597_0007613 3300046542 Bacteria 5481
151 Ga0495611_0008342 3300046648 Bacteria 4386
152 Ga0495625_0062370 3300046660 Bacteria 2635
153 Ga0495625_0079023 3300046660 Bacteria 2295
154 Ga0495669_0006267 3300046684 Bacteria 4967
155 Ga0495649_0003534 3300046694 Bacteria 10508
156 Ga0495589_0000044 3300046794 Bacteria 125396
157 Ga0495600_0058463 3300046809 Bacteria 2519
158 Ga0495581_0206362 3300047315 Bacteria 1149
159 Ga0495604_0005952 3300047317 Bacteria 9677
160 Ga0495636_0007114 3300047318 Bacteria 4403
161 Ga0495636_0039381 3300047318 Bacteria 1957
162 Ga0495676_0093437 3300047321 Bacteria 2243
163 Ga0495677_0018687 3300047445 Bacteria 2512
164 Ga0495681_0005198 3300047470 Bacteria 8746
165 Ga0495681_0035565 3300047470 Bacteria 2472
166 Ga0495686_0000418 3300047472 Bacteria 67274
167 Ga0495686_0022628 3300047472 Bacteria 4158
168 Ga0496101_0038377 3300048904 Bacteria 3402
169 Ga0496103_0032073 3300048906 Bacteria 3205
170 Ga0496107_0054572 3300048910 Bacteria 2884
171 Ga0496108_0316680 3300048911 Bacteria 1360
172 Ga0496115_0003833 3300048918 Bacteria 10836
173 Ga0496115_0019007 3300048918 Bacteria 5284
174 Ga0496116_0000001 3300048919 Bacteria 1501681
175 Ga0496116_0039689 3300048919 Bacteria 3251
176 Ga0496117_0012050 3300048920 Bacteria 7675
177 Ga0496117_0050224 3300048920 Bacteria 2958
178 Ga0496117_0058794 3300048920 Bacteria 2660
179 Ga0496118_0000307 3300048921 Bacteria 85093
180 Ga0496118_0004213 3300048921 Bacteria 17269
181 Ga0496118_0006887 3300048921 Bacteria 12305
182 Ga0496121_0000108 3300048924 Bacteria 188757
183 Ga0496121_0203378 3300048924 Bacteria 1409
184 Ga0496122_0071425 3300048925 Bacteria 2474
185 Ga0496124_0036500 3300048927 Bacteria 4286
186 Ga0496125_0018688 3300048928 Bacteria 6573
187 Ga0496126_0001457 3300048929 Bacteria 36967
188 Ga0496126_0023727 3300048929 Bacteria 5940
189 Ga0495678_015525 3300049459 Bacteria 3500
190 Ga0495682_0005509 3300049460 Bacteria 5246
191 Ga0501031_0125567 3300049568 Bacteria 1676
192 Ga0501047_0131842 3300049581 Bacteria 2379
193 Ga0501047_0150232 3300049581 Bacteria 2206
194 Ga0501067_0094290 3300049583 Bacteria 1662
195 Ga0501035_0324443 3300049822 Bacteria 1293
196 Ga0501035_0362862 3300049822 Bacteria 1210
197 Ga0501044_0073117 3300049823 Bacteria 3485
198 nmdc:mga0k408_113511_c1 3300050493 Bacteria 1602
199 nmdc:mga09592_84140_c1 3300050508 Bacteria 2712
200 nmdc:mga06r32_268185_c1 3300050510 Bacteria 1694
201 nmdc:mga06r32_39880_c1 3300050510 Bacteria 4457
202 Ga0495619_0218235 3300053085 Bacteria 1321
203 Ga0500643_002653 3300053087 Bacteria 9026
204 Ga0500583_0000929 3300053092 Bacteria 8371
205 Ga0500583_0085686 3300053092 Bacteria 1528
206 Ga0500556_0020467 3300053104 Bacteria 2118
207 Ga0500572_000454 3300053111 Bacteria 14246
208 Ga0500597_000421 3300053120 Bacteria 8873
209 Ga0500573_0000008 3300053140 Bacteria 237795
210 Ga0500588_0012910 3300053146 Bacteria 2084
211 Ga0500590_016349 3300053148 Bacteria 3836
212 Ga0500616_0043894 3300053153 Bacteria 2387
213 Ga0500636_0001125 3300053177 Bacteria 14325
214 Ga0500636_0006797 3300053177 Bacteria 6587
215 Ga0501084_0268189 3300054114 Bacteria 1441
216 8016529137 8016522445 Bacteria 8156687
217 2503201138 2503198000 Bacteria 6884444
218 2508853154 2508501071 Bacteria 5454741
219 2511124642 2510917020 Bacteria 5657507
220 2511195580 2510917030 Bacteria 7460662
221 2585266486 2582581306 Bacteria 6450535
222 2585387463 2582581865 Bacteria 6644329
223 2585555284 2585427530 Bacteria 7383882
224 2585826842 2585427591 Bacteria 5482980
225 2585831199 2585427592 Bacteria 5370892
226 2586001249 2585427634 Bacteria 6455027
227 2600228825 2599185359 Bacteria 4772316
228 2719385864 2718217927 Bacteria 6972593
229 2721399643 2718218423 Bacteria 6438183
230 2724038456 2721755809 Bacteria 6438790
231 2739305816 2738543024 Bacteria 5603683
232 2793360958 2791355266 Bacteria 7116587
233 2806050618 2802429634 Bacteria 7083200
234 2806057435 2802429635 Bacteria 7650140
235 2807180068 2806310673 Bacteria 4801221
236 2869174534 2869169390 Bacteria 6659796
237 2891675020 2891670763 Bacteria 4967099
238 2904506063 2904504865 Bacteria 5152820
239 2904711288
240 2906402089 2906401398 Bacteria 6693206
241 2908745726 2908739725 Bacteria 8628932
242 2909400739 2909399089 Bacteria 3922598
243 2923562636 2923556063 Bacteria 6793593
244 2977925012 2977922695 Bacteria 6956781
245 3004211927 3004211236 Bacteria 7417683
246 3004224592 3004218560 Bacteria 7421728
247 640938639 640753048 Bacteria 5495657
248 8004317284 8004312739 Bacteria 7444653
249 8005280644 8005275841 Bacteria 6929066
250 8005559220 8005556819 Bacteria 6908598
251 8005569866 8005563573 Bacteria 7153261
252 8005577169 8005570704 Bacteria 6957481
253 8016534343 8016530956 Bacteria 8155261
254 8016547570 8016539877 Bacteria 8155419
255 8016554571 8016548790 Bacteria 8155074
256 8016576844 8016575299 Bacteria 8154085
257 8016600712 8016595262 Bacteria 8149947
258 8016626067 8016622563 Bacteria 7999408
259 8018150612 8018150411 Bacteria 5549903
260 8018154612 8018150411 Bacteria 5549903
261 8018167064 8018163183 Bacteria 7277977
262 8019534107 8019530166 Bacteria 8155624
263 8019553159 8019547302 Bacteria 7996444
264 8054854255 8054849141 Bacteria 5232694
265 JGI25162J39368_1001952
266 JGI25157J39369_1000878
267 JGI25164J39214_1000528
268 JGI25153J46596_10007454
269 Ga0055526_1003967
270 Ga0055524_1023135
271 Ga0055528_1000269
272 Ga0055540_1000510
273 Ga0070676_10051562
274 Ga0070670_100332352
275 Ga0068869_100062874
276 Ga0068869_100064704
277 Ga0068869_100073870
278 Ga0070675_100023869
279 Ga0070675_100041523
280 Ga0070674_100016592
281 Ga0070659_100004281
282 Ga0070708_100124781
283 Ga0070678_100017235
284 Ga0070698_100532283
285 Ga0068853_100225075
286 Ga0070672_100007036
287 Ga0070696_100001973
288 Ga0070665_100001969
289 Ga0068855_100010677
290 Ga0068857_100010699
291 Ga0068856_100000201
292 Ga0068856_100716782
293 Ga0068852_100021920
294 Ga0068861_100248574
295 Ga0068860_100179880
296 Ga0068862_100077650
297 Ga0068862_100091048
298 Ga0081540_1001861
299 Ga0070717_10368761
300 Ga0075365_10000975
301 Ga0075367_10028346
302 Ga0075367_10318593
303 Ga0075369_10114781
304 Ga0075428_100106255
305 Ga0075430_100125923
306 Ga0075431_100052353
307 Ga0075431_100769639
308 Ga0075429_100057999
309 Ga0097620_100032815
310 Ga0105251_10002947
311 Ga0105250_10000046
312 Ga0111539_10534890
313 Ga0105243_10258074
314 Ga0105241_10007828
315 Ga0105237_10004443
316 Ga0105238_10193543
317 Ga0105249_10276968
318 Ga0105249_10516459
319 Ga0105239_10024329
320 Ga0105239_10373690
321 Ga0157370_10108087
322 Ga0157369_10036586
323 Ga0157375_10339115
324 Ga0163163_10040952
325 Ga0163163_10145805
326 Ga0157380_10105994
327 Ga0182008_10017131
328 Ga0157379_10131474
329 Ga0182007_10005298
330 Ga0209674_101357
331 Ga0207427_100044
332 Ga0207427_100088
333 Ga0209437_100005
334 Ga0209026_1000010
335 Ga0209759_1004684
336 Ga0209233_1000011
337 Ga0209233_1000969
338 Ga0209673_1000013
339 Ga0209564_1000264
340 Ga0209758_1004808
341 Ga0209758_1064228
342 Ga0209050_1005417
343 Ga0209256_1000369
344 Ga0209051_1000142
345 Ga0209051_1005355
346 Ga0207656_10094939
347 Ga0207696_1000037
348 Ga0207713_1004085
349 Ga0207688_10101715
350 Ga0207647_10000020
351 Ga0207643_10046839
352 Ga0207654_10043680
353 Ga0207695_10000008
354 Ga0207671_10002506
355 Ga0207657_10007142
356 Ga0207687_10049601
357 Ga0207690_10044722
358 Ga0207706_10115263
359 Ga0207709_10058477
360 Ga0207709_10345737
361 Ga0207669_10006813
362 Ga0207689_10003862
363 Ga0207689_10269593
364 Ga0207667_10201652
365 Ga0207668_10170467
366 Ga0207668_10399215
367 Ga0207658_10058797
368 Ga0207658_10217270
369 Ga0207703_10448779
370 Ga0207639_10075213
371 Ga0207708_10196230
372 Ga0207702_10000666
373 Ga0207648_10343731
374 Ga0207676_10520847
375 Ga0207674_10002015
376 Ga0207675_100076156
377 Ga0207683_10009468
378 Ga0209813_10045398
379 Ga0268266_10003005
380 Ga0268266_10179788
381 Ga0268264_10052798
382 Ga0265328_10015756
383 Ga0307513_10010966
384 Ga0265313_10000194
385 Ga0307405_10121213
386 Ga0307413_10170191
387 Ga0307413_10314820
388 Ga0307406_10221507
389 Ga0307412_10358425
390 Ga0307411_10533721
391 Ga0307510_10202199
392 Ga0373927_0001173
393 Ga0395898_0011893
394 Ga0395901_0004382
395 Ga0466959_0138594
396 Ga0495629_0086113
397 Ga0495638_0000399
398 Ga0495639_0016504
399 Ga0495662_0003738
400 Ga0495584_0177368
401 Ga0495594_0074987
402 Ga0495596_0000078
403 Ga0495583_0030323
404 Ga0495610_0000040
405 Ga0495616_0007637
406 Ga0495632_0161843
407 Ga0495637_0010189
408 Ga0495643_0050040
409 Ga0495644_0064576
410 Ga0495666_0089304
411 Ga0495654_0000066
412 Ga0495654_0007132
413 Ga0495598_0037768
414 Ga0495597_0007613
415 Ga0495611_0008342
416 Ga0495625_0062370
417 Ga0495625_0079023
418 Ga0495669_0006267
419 Ga0495649_0003534
420 Ga0495589_0000044
421 Ga0495600_0058463
422 Ga0495581_0206362
423 Ga0495604_0005952
424 Ga0495636_0007114
425 Ga0495636_0039381
426 Ga0495676_0093437
427 Ga0495677_0018687
428 Ga0495681_0005198
429 Ga0495681_0035565
430 Ga0495686_0000418
431 Ga0495686_0022628
432 Ga0496101_0038377
433 Ga0496103_0032073
434 Ga0496107_0054572
435 Ga0496108_0316680
436 Ga0496115_0003833
437 Ga0496115_0019007
438 Ga0496116_0000001
439 Ga0496116_0039689
440 Ga0496117_0012050
441 Ga0496117_0050224
442 Ga0496117_0058794
443 Ga0496118_0000307
444 Ga0496118_0004213
445 Ga0496118_0006887
446 Ga0496121_0000108
447 Ga0496121_0203378
448 Ga0496122_0071425
449 Ga0496124_0036500
450 Ga0496125_0018688
451 Ga0496126_0001457
452 Ga0496126_0023727
453 Ga0495678_015525
454 Ga0495682_0005509
455 Ga0501031_0125567
456 Ga0501047_0131842
457 Ga0501047_0150232
458 Ga0501067_0094290
459 Ga0501035_0324443
460 Ga0501035_0362862
461 Ga0501044_0073117
462 nmdc:mga0k408_113511_c1
463 nmdc:mga09592_84140_c1
464 nmdc:mga06r32_268185_c1
465 nmdc:mga06r32_39880_c1
466 Ga0495619_0218235
467 Ga0500643_002653
468 Ga0500583_0000929
469 Ga0500583_0085686
470 Ga0500556_0020467
471 Ga0500572_000454
472 Ga0500597_000421
473 Ga0500573_0000008
474 Ga0500588_0012910
475 Ga0500590_016349
476 Ga0500616_0043894
477 Ga0500636_0001125
478 Ga0500636_0006797
479 Ga0501084_0268189
480 8016529137
481 2503201138
482 2508853154
483 2511124642
484 2511195580
485 2585266486
486 2585387463
487 2585555284
488 2585826842
489 2585831199
490 2586001249
491 2600228825
492 2719385864
493 2721399643
494 2724038456
495 2739305816
496 2793360958
497 2806050618
498 2806057435
499 2807180068
500 2869174534
501 2891675020
502 2904506063
503 2904711288
504 2906402089
505 2908745726
506 2909400739
507 2923562636
508 2977925012
509 3004211927
510 3004224592
511 640938639
512 8004317284
513 8005280644
514 8005559220
515 8005569866
516 8005577169
517 8016534343
518 8016547570
519 8016554571
520 8016576844
521 8016600712
522 8016626067
523 8018150612
524 8018154612
525 8018167064
526 8019534107
527 8019553159
528 8054854255

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

1

56

0.98

PF03466

LysR_substrate

LysR substrate binding domain

80

275

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
5x0n-assembly3.cif.gz_F regulatory domain of variant c227s aphb from vibrio vulnificus 0.9167 94 293
4pzj-assembly1.cif.gz_A-2 1.60 angstrom resolution crystal structure of a transcriptional regulator of the lysr family from eggerthella lenta dsm 2243 0.9159 7 72
5x0n-assembly2.cif.gz_C regulatory domain of variant c227s aphb from vibrio vulnificus 0.9071 93 293
7trv-assembly1.cif.gz_A crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.9041 1 86
5x0n-assembly2.cif.gz_B regulatory domain of variant c227s aphb from vibrio vulnificus 0.8986 94 293
ID Description Score Start End Superfamily
af_P77333_5_91_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9789 5 90 1.10.10.10
af_P75836_3_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9691 5 88 1.10.10.10
af_P77333_92_296_3.40.190.290 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2; 0.9645 92 296 3.40.190.290
af_P77333_92_296_3.40.190.290 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2; 0.9599 92 296 3.40.190.290
af_P75836_90_290_3.40.190.290 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2; 0.9588 92 293 3.40.190.290
ID Description Score Start End GO Terms
AF-A0A7Y8EZ58-F1-model_v4 LysR family transcriptional regulator 0.9716 94 293 GO:0003700
GO:0006351
GO:0043565
AF-A0A3D0GPD6-F1-model_v4 LysR family transcriptional regulator 0.9662 4 73 GO:0003700
AF-A0A7W6XI29-F1-model_v4 DNA-binding transcriptional LysR family regulator 0.9516 1 74 GO:0003700
GO:0006351
GO:0043565
AF-A0A4U6BBZ3-F1-model_v4 LysR family transcriptional regulator 0.9496 151 293 GO:0003700
GO:0006351
GO:0043565
AF-A0A242M2C6-F1-model_v4 Putative transcription regulator protein of MDR efflux pump cluster 0.9365 168 265 GO:0003700
GO:0006351
GO:0043565

Map