F373733

General Info

Members Datasets Scaffolds Average Seq Length
265 192 530 764

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8056037122|8056038953
Length 861
Sequence EAGGDALPDETPDELESAAVEVDRLTTRILELRDQYYEQNASTVSDQEYDALVRQLDELEHEHPELRSQDSPTQTVGGRAVTTMFTPVTHAERMLSLDNVFSEEELDEWATKVQRDAGRGVVRFLSELKIDGLAINLRYENGVLVTAATRGDGVVGEDVTENVLQIDSIPARLKGSGHPSLVEVRGEIFFPVASFDELNAAQEAAGERVFANPRNAAAGSLRQKSEGKNERQLALVAARLHRLRMLVHGIGAWPDPPVAAQSEVYGLLAEWGLPTSTHYRVFDTVGEVAEFIRSYGINRSSVEHQIDGIVVKVDDLALHDELGATSRAPRWATAYKYPPEEVNTKLLDIVVSVGRTGRATPFAVMEKVEVAGSEVRQATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEVLGPVVELRDGSEYAFVMPENCPECGTRLAPAKEGDIDLRCPNARSCPAQVRGRVEHVGSRGALDIEGLGEVSAAALTQPSEPAEPPLDTEAGLFSLEMRDLFPIRVIVRDNETGLEKLNDDGTPKLVTPFRRKRRVSGRDADPAHDPEATEFWGDAGSVPSSNAIELLANIEKAKTKPLWRILVSLSIRHVGPVAARALADYFGSLDAIRAATRDELAAVDGVGGIIADALIAWFEVDWHVEILDRWAAAGVQFATPGHPGPGANVGAGGVLEGITVVATGSLEGFTREGAQEAIIAAGGKAASSVSKKTDFVAAGPGAGSKLPKAEALGLRIIDAAQFALLVTEGPAALGPPPGADPGDADPAGSIPPTAGDDAAPAGSIPPAASNDAVPASAEAGATPTKPRAKRAPRAKKPTTPAPSPDDEAAIGEAATGEASVDEAVVDLAAADGNER

Samples

Sample ID Description Type Environment
1 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
2 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
3 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
4 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
5 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
6 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
7 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
8 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
9 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
10 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
37 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
38 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
39 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
40 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
46 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
49 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
67 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
68 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
69 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
70 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
71 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
72 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
73 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
74 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
75 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
76 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
77 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
78 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
79 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
80 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
81 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
82 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
83 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
84 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
85 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
86 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
87 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
88 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
89 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
90 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
91 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
92 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
93 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
94 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
95 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
96 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
97 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
98 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
99 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
112 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
113 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
114 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
115 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
116 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
117 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
120 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
121 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
122 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
123 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
124 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
125 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
126 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
127 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
128 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
129 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
130 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
131 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
132 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
133 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
134 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
135 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere
136 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
137 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
138 2643221549 Agromyces sp. Root1464 Isolate Unclassified
139 2643221566 Microbacterium sp. Root166 Isolate Unclassified
140 2643221572 Leifsonia sp. Root60 Isolate Unclassified
141 2643221597 Microbacterium sp. Root180 Isolate Unclassified
142 2643221616 Leifsonia sp. Root227 Isolate Unclassified
143 2643221619 Agromyces sp. Root81 Isolate Unclassified
144 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
145 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
146 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
147 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
148 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
149 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
150 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
151 2808606372 Agromyces sp. 23-23 Isolate Unclassified
152 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
153 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
154 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
155 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
156 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
157 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
158 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
159 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
160 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
161 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
162 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
163 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
164 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
165 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
166 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
167 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
168 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
169 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
170 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
171 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
172 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
173 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
174 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
175 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
176 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
177 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
178 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
179 2928153084 Leifsonia sp. 563 Isolate Unclassified
180 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
181 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
182 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
183 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
184 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
185 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
186 2984592036 Aeromicrobium sp. SORGH_AS981 Isolate Aerial Root
187 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
188 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
189 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
190 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
191 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
192 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.23
Metatranscriptomes 1.89
Isolates 21.89

Biome Distribution

Category Percentage (%)
Aerial Root 0.75
Bulb 0
Endosphere 18.87
Nodule 0
Rhizoplane 3.02
Rhizosphere 51.7
Stem 0
Stem Tuber 0.38
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25164J39214_1001093 3300002772 Bacteria 7831
2 JGI25165J46597_1000002 3300003214 Bacteria 765387
3 Ga0006562J51391_1026734 3300003578 Bacteria 6080
4 Ga0055539_1000058 3300003752 Bacteria 149354
5 Ga0055533_1000001 3300003756 Bacteria 1863437
6 Ga0055525_1000180 3300003759 Bacteria 78601
7 Ga0055527_1000012 3300003760 Bacteria 348744
8 Ga0055542_1000017 3300003762 Bacteria 348744
9 Ga0055529_1000023 3300003763 Bacteria 314383
10 Ga0070658_10004973 3300005327 Bacteria 10833
11 Ga0070658_10031565 3300005327 Bacteria 4254
12 Ga0070659_100000149 3300005366 Bacteria 53509
13 Ga0070663_100029028 3300005455 Bacteria 3774
14 Ga0070681_10065050 3300005458 Bacteria 3616
15 Ga0070706_100006165 3300005467 Bacteria 11341
16 Ga0070707_100000181 3300005468 Bacteria 62074
17 Ga0070698_100004762 3300005471 Bacteria 14891
18 Ga0068855_100002405 3300005563 Bacteria 23088
19 Ga0068855_100031290 3300005563 Bacteria 6355
20 Ga0068857_100000219 3300005577 Bacteria 37769
21 Ga0068852_100005903 3300005616 Bacteria 8804
22 Ga0068864_100081619 3300005618 Bacteria 2835
23 Ga0068851_10000014 3300005834 Bacteria 151675
24 Ga0068858_100000893 3300005842 Bacteria 30963
25 Ga0081540_1002638 3300005983 Bacteria 14577
26 Ga0075365_10004965 3300006038 Bacteria 7120
27 Ga0075365_10006540 3300006038 Bacteria 6421
28 Ga0075364_10016386 3300006051 Bacteria 4610
29 Ga0105240_10013606 3300009093 Bacteria 11163
30 Ga0105245_10022823 3300009098 Bacteria 5490
31 Ga0105243_10012866 3300009148 Bacteria 6322
32 Ga0105237_10000133 3300009545 Bacteria 104324
33 Ga0105237_10047439 3300009545 Bacteria 4319
34 Ga0105238_10003000 3300009551 Bacteria 16857
35 Ga0157371_10008265 3300013102 Bacteria 8313
36 Ga0157370_10005788 3300013104 Bacteria 13815
37 Ga0157369_10002337 3300013105 Bacteria 22828
38 Ga0171462_1003 3300013250 Bacteria 853796
39 Ga0157372_10087077 3300013307 Bacteria 3543
40 Ga0197907_11093632 3300020069 Bacteria 4211
41 Ga0206354_11247678 3300020081 Bacteria 5225
42 Ga0206353_12028661 3300020082 Bacteria 8725
43 Ga0224712_10000637 3300022467 Bacteria 7164
44 Ga0209566_100026 3300025225 Bacteria 367457
45 Ga0209674_100001 3300025226 Bacteria 4013750
46 Ga0209672_100003 3300025228 Bacteria 1560476
47 Ga0209147_100309 3300025229 Bacteria 38478
48 Ga0209563_100001 3300025230 Bacteria 4013775
49 Ga0207427_100089 3300025231 Bacteria 135504
50 Ga0209677_100001 3300025253 Bacteria 4013787
51 Ga0209677_100375 3300025253 Bacteria 27361
52 Ga0209148_1000004 3300025254 Bacteria 1844481
53 Ga0209148_1001633 3300025254 Bacteria 10288
54 Ga0209233_1000001 3300025261 Bacteria 2992747
55 Ga0209455_1000022 3300025272 Bacteria 688910
56 Ga0207656_10000002 3300025321 Bacteria 792178
57 Ga0207705_10000213 3300025909 Bacteria 58174
58 Ga0207684_10002022 3300025910 Bacteria 20887
59 Ga0207654_10000001 3300025911 Bacteria 1816198
60 Ga0207695_10002493 3300025913 Bacteria 27109
61 Ga0207695_10011501 3300025913 Bacteria 10714
62 Ga0207671_10000002 3300025914 Bacteria 1144816
63 Ga0207646_10003234 3300025922 Bacteria 18581
64 Ga0207694_10000115 3300025924 Bacteria 84427
65 Ga0207687_10003754 3300025927 Bacteria 10208
66 Ga0207690_10001356 3300025932 Bacteria 15362
67 Ga0207667_10000272 3300025949 Bacteria 71730
68 Ga0207667_10006016 3300025949 Bacteria 14767
69 Ga0207667_10057517 3300025949 Bacteria 4081
70 Ga0207667_10070303 3300025949 Bacteria 3643
71 Ga0207703_10000141 3300026035 Bacteria 86068
72 Ga0207639_10035795 3300026041 Bacteria 3675
73 Ga0207676_10052785 3300026095 Bacteria 3180
74 Ga0207674_10001774 3300026116 Bacteria 27546
75 Ga0207674_10068965 3300026116 Bacteria 3557
76 Ga0207698_10000162 3300026142 Bacteria 42850
77 Ga0265340_10003118 3300031247 Bacteria 9400
78 Ga0307513_10001059 3300031456 Bacteria 40013
79 Ga0307514_10002541 3300031649 Bacteria 18815
80 Ga0307514_10006062 3300031649 Bacteria 10625
81 Ga0316576_10001014 3300031727 Bacteria 14500
82 Ga0316576_10005672 3300031727 Bacteria 7674
83 Ga0316578_10009758 3300031728 Bacteria 4951
84 Ga0316584_0001474 3300036712 Bacteria 14137
85 Ga0395899_0015808 3300037312 Bacteria 5754
86 Ga0395900_0078749 3300037418 Bacteria 3386
87 Ga0466965_0000009 3300044683 Bacteria 122488
88 Ga0466965_0003334 3300044683 Bacteria 7033
89 Ga0466966_0032771 3300044684 Bacteria 3364
90 Ga0466961_0027282 3300044693 Bacteria 3672
91 Ga0466968_0006733 3300044735 Bacteria 4343
92 Ga0466970_0018106 3300044765 Bacteria 3644
93 Ga0466970_0035799 3300044765 Bacteria 2629
94 Ga0466960_0024260 3300044901 Bacteria 2734
95 Ga0466959_0003915 3300045049 Bacteria 9883
96 Ga0495650_0001013 3300046471 Bacteria 31698
97 Ga0496102_0076977 3300048905 Bacteria 3070
98 Ga0496103_0013184 3300048906 Bacteria 4900
99 Ga0496105_0047014 3300048908 Bacteria 3561
100 Ga0496107_0032001 3300048910 Bacteria 3757
101 Ga0496109_0068849 3300048912 Bacteria 3244
102 Ga0496114_0008452 3300048917 Bacteria 8156
103 Ga0496115_0011477 3300048918 Bacteria 6643
104 Ga0496115_0023496 3300048918 Bacteria 4784
105 Ga0496117_0000053 3300048920 Bacteria 279396
106 Ga0496117_0001576 3300048920 Bacteria 32370
107 Ga0496117_0002371 3300048920 Bacteria 24017
108 Ga0496117_0005515 3300048920 Bacteria 13253
109 Ga0496117_0013833 3300048920 Bacteria 7002
110 Ga0496117_0028669 3300048920 Bacteria 4308
111 Ga0496118_0002454 3300048921 Bacteria 24972
112 Ga0496118_0027924 3300048921 Bacteria 4766
113 Ga0496118_0029206 3300048921 Bacteria 4628
114 Ga0496119_0000924 3300048922 Bacteria 37994
115 Ga0496119_0002264 3300048922 Bacteria 21392
116 Ga0496119_0004238 3300048922 Bacteria 14385
117 Ga0496119_0012174 3300048922 Bacteria 7019
118 Ga0496119_0019313 3300048922 Bacteria 5026
119 Ga0496119_0023872 3300048922 Bacteria 4321
120 Ga0496120_0000426 3300048923 Bacteria 66901
121 Ga0496120_0010133 3300048923 Bacteria 6604
122 Ga0496121_0000132 3300048924 Bacteria 167578
123 Ga0496122_0000194 3300048925 Bacteria 139191
124 Ga0496122_0006042 3300048925 Bacteria 14119
125 Ga0496122_0013893 3300048925 Bacteria 7833
126 Ga0496122_0014104 3300048925 Bacteria 7753
127 Ga0496122_0019167 3300048925 Bacteria 6267
128 Ga0496122_0080946 3300048925 Bacteria 2262
129 Ga0496123_0000350 3300048926 Bacteria 86569
130 Ga0496123_0000681 3300048926 Bacteria 56018
131 Ga0496123_0002958 3300048926 Bacteria 19798
132 Ga0496123_0013803 3300048926 Bacteria 6741
133 Ga0496124_0003767 3300048927 Bacteria 18240
134 Ga0496124_0004053 3300048927 Bacteria 17370
135 Ga0496124_0008052 3300048927 Bacteria 11083
136 Ga0496124_0008895 3300048927 Bacteria 10415
137 Ga0496125_0000077 3300048928 Bacteria 232629
138 Ga0496125_0017043 3300048928 Bacteria 6943
139 Ga0496125_0022371 3300048928 Bacteria 5872
140 Ga0496126_0012711 3300048929 Bacteria 8610
141 Ga0496126_0014786 3300048929 Bacteria 7873
142 Ga0496126_0044891 3300048929 Bacteria 4066
143 Ga0501031_0004368 3300049568 Bacteria 9155
144 Ga0501032_0001556 3300049569 Bacteria 18312
145 Ga0501032_0039471 3300049569 Bacteria 3211
146 Ga0501032_0058307 3300049569 Bacteria 2592
147 Ga0501033_0002659 3300049570 Bacteria 15010
148 Ga0501033_0003764 3300049570 Bacteria 12324
149 Ga0501034_0007125 3300049571 Bacteria 11927
150 Ga0501034_0014274 3300049571 Bacteria 8185
151 Ga0501034_0016561 3300049571 Bacteria 7558
152 Ga0501034_0047729 3300049571 Bacteria 4323
153 Ga0501034_0060637 3300049571 Bacteria 3800
154 Ga0501036_0008562 3300049572 Bacteria 8389
155 Ga0501037_0013021 3300049573 Bacteria 6132
156 Ga0501038_0001166 3300049574 Bacteria 23863
157 Ga0501039_0000287 3300049575 Bacteria 35995
158 Ga0501042_0006518 3300049578 Bacteria 7582
159 Ga0501043_0004673 3300049579 Bacteria 11100
160 Ga0501046_0001394 3300049580 Bacteria 23269
161 Ga0501046_0013854 3300049580 Bacteria 6810
162 Ga0501047_0011806 3300049581 Bacteria 8261
163 Ga0501047_0032158 3300049581 Bacteria 5063
164 Ga0501047_0042644 3300049581 Bacteria 4384
165 Ga0501070_0000100 3300049586 Bacteria 75001
166 Ga0501070_0002817 3300049586 Bacteria 15182
167 Ga0501070_0006307 3300049586 Bacteria 10093
168 Ga0501070_0026693 3300049586 Bacteria 4845
169 Ga0501071_0000388 3300049587 Bacteria 21660
170 Ga0501072_0022801 3300049588 Bacteria 4858
171 Ga0501073_0000223 3300049589 Bacteria 37267
172 Ga0501073_0018072 3300049589 Bacteria 5099
173 Ga0501073_0037544 3300049589 Bacteria 3439
174 Ga0501080_0000083 3300049742 Bacteria 63863
175 Ga0501083_0000031 3300049744 Bacteria 104819
176 Ga0501035_0009248 3300049822 Bacteria 9162
177 Ga0501035_0030005 3300049822 Bacteria 4959
178 Ga0501044_0005242 3300049823 Bacteria 14418
179 Ga0501044_0015200 3300049823 Bacteria 8291
180 Ga0501045_0008397 3300049824 Bacteria 7197
181 nmdc:mga0yw44_6157_c1 3300050492 Bacteria 5768
182 nmdc:mga06z11_10401_c1 3300050494 Bacteria 3963
183 Ga0500635_0000010 3300053080 Bacteria 147500
184 Ga0500635_0006013 3300053080 Bacteria 3222
185 Ga0500643_000072 3300053087 Bacteria 112810
186 Ga0500651_0000194 3300053093 Bacteria 38826
187 Ga0500556_0000001 3300053104 Bacteria 1135060
188 Ga0500556_0000086 3300053104 Bacteria 87063
189 Ga0500562_000397 3300053108 Bacteria 10573
190 Ga0500593_005225 3300053117 Bacteria 5091
191 Ga0500559_0000063 3300053136 Bacteria 87005
192 Ga0500559_0003102 3300053136 Bacteria 8275
193 Ga0500559_0004023 3300053136 Bacteria 7060
194 Ga0500568_0000006 3300053139 Bacteria 522235
195 Ga0500568_0000028 3300053139 Bacteria 161589
196 Ga0500568_0000102 3300053139 Bacteria 78197
197 Ga0500573_0000001 3300053140 Bacteria 436394
198 Ga0500573_0003476 3300053140 Bacteria 8159
199 Ga0500573_0004581 3300053140 Bacteria 7306
200 Ga0500590_007032 3300053148 Bacteria 5529
201 Ga0500616_0000078 3300053153 Bacteria 202009
202 Ga0500616_0000427 3300053153 Bacteria 56111
203 Ga0500616_0000584 3300053153 Bacteria 44375
204 Ga0500616_0000881 3300053153 Bacteria 33077
205 Ga0500616_0005846 3300053153 Bacteria 8240
206 Ga0500620_000233 3300053155 Bacteria 11018
207 Ga0500645_010417 3300053730 Bacteria 3077
208 8056038953 8056037122 Bacteria 3854319
209 2587863331 2585428094 Bacteria 3604039
210 2588108992 2585428157 Bacteria 3018951
211 2643767944 2643221549 Bacteria 4042819
212 2643848546 2643221566 Bacteria 3460379
213 2643875528 2643221572 Bacteria 3614809
214 2643996039 2643221597 Bacteria 3347721
215 2644095778 2643221616 Bacteria 4066575
216 2644111337 2643221619 Bacteria 4158469
217 2644183098 2643221632 Bacteria 3406696
218 2644382583 2643221669 Bacteria 3611286
219 2753301182 2751185788 Bacteria 4541048
220 2758225914 2757320536 Bacteria 3629334
221 2774399345 2773857763 Bacteria 4180068
222 2808631057 2808606306 Bacteria 3608896
223 2808885766 2808606368 Bacteria 3174172
224 2808901814 2808606372 Bacteria 4649509
225 2809227558 2808606447 Bacteria 3572005
226 2812323359 2811994872 Bacteria 4121241
227 2821270142 2821268502 Bacteria 3750023
228 2833711106 2833709550 Bacteria 4008291
229 2844842151 2844841374 Bacteria 3917147
230 2844854775 2844852863 Bacteria 3849151
231 2852634319 2852632344 Bacteria 3463163
232 2852645944 2852643534 Bacteria 3013378
233 2857730113 2857729791 Bacteria 4040535
234 2857733906 2857733635 Bacteria 3532004
235 2857737830 2857737099 Bacteria 3104305
236 2862995060 2862993130 Bacteria 3860849
237 2870624198 2870622029 Bacteria 3643329
238 2870630498 2870628048 Bacteria 3696012
239 2884765141 2884763398 Bacteria 4091164
240 2895661612 2895660088 Bacteria 3782833
241 2904430909 2904430863 Bacteria 3486923
242 2904503570 2904501621 Bacteria 3401437
243 2908675217 2908674828 Bacteria 3382763
244 2909075466 2909074476 Bacteria 3436050
245 2919039896 2919039151 Bacteria 3391018
246 2919045158 2919042368 Bacteria 3905917
247 2919057797 2919055335 Bacteria 3875751
248 2919446456 2919443155 Bacteria 4072969
249 2919524199 2919523602 Bacteria 3788128
250 2928108412 2928104781 Bacteria 3877447
251 2928123337 2928121344 Bacteria 3972376
252 2928156192 2928153084 Bacteria 4020257
253 2928501238 2928500415 Bacteria 3384541
254 2939658675 2939657138 Bacteria 3740283
255 2939662633 2939660829 Bacteria 3784848
256 2964327171 2964326757 Bacteria 3290868
257 2966925816 2966924647 Bacteria 3268643
258 2984553359 2984551494 Bacteria 3877562
259 2984595212 2984592036 Bacteria 3670284
260 8004213976 8004212874 Bacteria 2861420
261 8016257401 8016254467 Bacteria 3797036
262 8045831730 8045830549 Bacteria 4444727
263 8046353102 8046352972 Bacteria 3613806
264 8055036292 8055034563 Bacteria 3562128
265 8057347865 8057345674 Bacteria 4160394
266 JGI25164J39214_1001093
267 JGI25165J46597_1000002
268 Ga0006562J51391_1026734
269 Ga0055539_1000058
270 Ga0055533_1000001
271 Ga0055525_1000180
272 Ga0055527_1000012
273 Ga0055542_1000017
274 Ga0055529_1000023
275 Ga0070658_10004973
276 Ga0070658_10031565
277 Ga0070659_100000149
278 Ga0070663_100029028
279 Ga0070681_10065050
280 Ga0070706_100006165
281 Ga0070707_100000181
282 Ga0070698_100004762
283 Ga0068855_100002405
284 Ga0068855_100031290
285 Ga0068857_100000219
286 Ga0068852_100005903
287 Ga0068864_100081619
288 Ga0068851_10000014
289 Ga0068858_100000893
290 Ga0081540_1002638
291 Ga0075365_10004965
292 Ga0075365_10006540
293 Ga0075364_10016386
294 Ga0105240_10013606
295 Ga0105245_10022823
296 Ga0105243_10012866
297 Ga0105237_10000133
298 Ga0105237_10047439
299 Ga0105238_10003000
300 Ga0157371_10008265
301 Ga0157370_10005788
302 Ga0157369_10002337
303 Ga0171462_1003
304 Ga0157372_10087077
305 Ga0197907_11093632
306 Ga0206354_11247678
307 Ga0206353_12028661
308 Ga0224712_10000637
309 Ga0209566_100026
310 Ga0209674_100001
311 Ga0209672_100003
312 Ga0209147_100309
313 Ga0209563_100001
314 Ga0207427_100089
315 Ga0209677_100001
316 Ga0209677_100375
317 Ga0209148_1000004
318 Ga0209148_1001633
319 Ga0209233_1000001
320 Ga0209455_1000022
321 Ga0207656_10000002
322 Ga0207705_10000213
323 Ga0207684_10002022
324 Ga0207654_10000001
325 Ga0207695_10002493
326 Ga0207695_10011501
327 Ga0207671_10000002
328 Ga0207646_10003234
329 Ga0207694_10000115
330 Ga0207687_10003754
331 Ga0207690_10001356
332 Ga0207667_10000272
333 Ga0207667_10006016
334 Ga0207667_10057517
335 Ga0207667_10070303
336 Ga0207703_10000141
337 Ga0207639_10035795
338 Ga0207676_10052785
339 Ga0207674_10001774
340 Ga0207674_10068965
341 Ga0207698_10000162
342 Ga0265340_10003118
343 Ga0307513_10001059
344 Ga0307514_10002541
345 Ga0307514_10006062
346 Ga0316576_10001014
347 Ga0316576_10005672
348 Ga0316578_10009758
349 Ga0316584_0001474
350 Ga0395899_0015808
351 Ga0395900_0078749
352 Ga0466965_0000009
353 Ga0466965_0003334
354 Ga0466966_0032771
355 Ga0466961_0027282
356 Ga0466968_0006733
357 Ga0466970_0018106
358 Ga0466970_0035799
359 Ga0466960_0024260
360 Ga0466959_0003915
361 Ga0495650_0001013
362 Ga0496102_0076977
363 Ga0496103_0013184
364 Ga0496105_0047014
365 Ga0496107_0032001
366 Ga0496109_0068849
367 Ga0496114_0008452
368 Ga0496115_0011477
369 Ga0496115_0023496
370 Ga0496117_0000053
371 Ga0496117_0001576
372 Ga0496117_0002371
373 Ga0496117_0005515
374 Ga0496117_0013833
375 Ga0496117_0028669
376 Ga0496118_0002454
377 Ga0496118_0027924
378 Ga0496118_0029206
379 Ga0496119_0000924
380 Ga0496119_0002264
381 Ga0496119_0004238
382 Ga0496119_0012174
383 Ga0496119_0019313
384 Ga0496119_0023872
385 Ga0496120_0000426
386 Ga0496120_0010133
387 Ga0496121_0000132
388 Ga0496122_0000194
389 Ga0496122_0006042
390 Ga0496122_0013893
391 Ga0496122_0014104
392 Ga0496122_0019167
393 Ga0496122_0080946
394 Ga0496123_0000350
395 Ga0496123_0000681
396 Ga0496123_0002958
397 Ga0496123_0013803
398 Ga0496124_0003767
399 Ga0496124_0004053
400 Ga0496124_0008052
401 Ga0496124_0008895
402 Ga0496125_0000077
403 Ga0496125_0017043
404 Ga0496125_0022371
405 Ga0496126_0012711
406 Ga0496126_0014786
407 Ga0496126_0044891
408 Ga0501031_0004368
409 Ga0501032_0001556
410 Ga0501032_0039471
411 Ga0501032_0058307
412 Ga0501033_0002659
413 Ga0501033_0003764
414 Ga0501034_0007125
415 Ga0501034_0014274
416 Ga0501034_0016561
417 Ga0501034_0047729
418 Ga0501034_0060637
419 Ga0501036_0008562
420 Ga0501037_0013021
421 Ga0501038_0001166
422 Ga0501039_0000287
423 Ga0501042_0006518
424 Ga0501043_0004673
425 Ga0501046_0001394
426 Ga0501046_0013854
427 Ga0501047_0011806
428 Ga0501047_0032158
429 Ga0501047_0042644
430 Ga0501070_0000100
431 Ga0501070_0002817
432 Ga0501070_0006307
433 Ga0501070_0026693
434 Ga0501071_0000388
435 Ga0501072_0022801
436 Ga0501073_0000223
437 Ga0501073_0018072
438 Ga0501073_0037544
439 Ga0501080_0000083
440 Ga0501083_0000031
441 Ga0501035_0009248
442 Ga0501035_0030005
443 Ga0501044_0005242
444 Ga0501044_0015200
445 Ga0501045_0008397
446 nmdc:mga0yw44_6157_c1
447 nmdc:mga06z11_10401_c1
448 Ga0500635_0000010
449 Ga0500635_0006013
450 Ga0500643_000072
451 Ga0500651_0000194
452 Ga0500556_0000001
453 Ga0500556_0000086
454 Ga0500562_000397
455 Ga0500593_005225
456 Ga0500559_0000063
457 Ga0500559_0003102
458 Ga0500559_0004023
459 Ga0500568_0000006
460 Ga0500568_0000028
461 Ga0500568_0000102
462 Ga0500573_0000001
463 Ga0500573_0003476
464 Ga0500573_0004581
465 Ga0500590_007032
466 Ga0500616_0000078
467 Ga0500616_0000427
468 Ga0500616_0000584
469 Ga0500616_0000881
470 Ga0500616_0005846
471 Ga0500620_000233
472 Ga0500645_010417
473 8056038953
474 2587863331
475 2588108992
476 2643767944
477 2643848546
478 2643875528
479 2643996039
480 2644095778
481 2644111337
482 2644183098
483 2644382583
484 2753301182
485 2758225914
486 2774399345
487 2808631057
488 2808885766
489 2808901814
490 2809227558
491 2812323359
492 2821270142
493 2833711106
494 2844842151
495 2844854775
496 2852634319
497 2852645944
498 2857730113
499 2857733906
500 2857737830
501 2862995060
502 2870624198
503 2870630498
504 2884765141
505 2895661612
506 2904430909
507 2904503570
508 2908675217
509 2909075466
510 2919039896
511 2919045158
512 2919057797
513 2919446456
514 2919524199
515 2928108412
516 2928123337
517 2928156192
518 2928501238
519 2939658675
520 2939662633
521 2964327171
522 2966925816
523 2984553359
524 2984595212
525 8004213976
526 8016257401
527 8045831730
528 8046353102
529 8055036292
530 8057347865

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03119

DNA_ligase_ZBD

NAD-dependent DNA ligase C4 zinc finger domain

429

457

0.98

PF03120

DNA_ligase_OB

NAD-dependent DNA ligase OB-fold domain

343

421

0.97

PF12826

HHH_2

Helix-hairpin-helix motif

590

653

0.97

PF14520

HHH_5

Helix-hairpin-helix domain

592

643

0.96

PF00533

BRCT

BRCA1 C Terminus (BRCT) domain

676

749

0.94

PF01653

DNA_ligase_aden

NAD-dependent DNA ligase adenylation domain

82

340

0.93

PF22745

Nlig-Ia

DNA ligase-like, N-terminal NAD+-binding domain

20

94

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
2k7f-assembly1.cif.gz_A haddock calculated model of the complex between the brct region of rfc p140 and dsdna 0.884 671 743
3bac-assembly1.cif.gz_A-2 structural basis for the inhibition of bacterial nad+ dependent dna ligase 0.8829 81 335
3bac-assembly1.cif.gz_A-2 structural basis for the inhibition of bacterial nad+ dependent dna ligase 0.8633 81 335
4yxm-assembly1.cif.gz_A structure of thermotoga maritima disa d75n mutant with reaction product c-di-amp 0.8604 594 642
2ebu-assembly1.cif.gz_A solution structure of the brct domain from human replication factor c large subunit 1 0.8583 669 747
ID Description Score Start End Superfamily
af_P9WNV1_524_596_1.10.150.20 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9998 578 649 1.10.150.20
af_P15042_317_390_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9755 336 406 2.40.50.140
1taeD01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9728 14 63 1.10.287.610
af_P9WNV1_524_596_1.10.150.20 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9728 578 649 1.10.150.20
4cc5A02 Alpha Beta;2-Layer Sandwich;Dna Ligase; domain 1; 0.9712 92 333 3.30.1490.70
ID Description Score Start End GO Terms
AF-A0A6G3PRP3-F1-model_v4 BRCT domain-containing protein 0.9649 671 742
AF-A0A529UDK6-F1-model_v4 deleted 0.9575 132 328
AF-A0A838S9B8-F1-model_v4 NAD-dependent DNA ligase LigA 0.9568 674 750 GO:0016874
AF-A0A7X4ZSR3-F1-model_v4 deleted 0.9548 674 740
AF-A0A529UDK6-F1-model_v4 deleted 0.9526 132 328

Map