F374432

General Info

Members Datasets Scaffolds Average Seq Length
266 207 190 540

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2870801768|2870803602
Length 586
Sequence TLTSGRHHAAPALHHTDEPVDTAAHTPLPHDVSTQALPVVAPAGAAPVVTVHGPVTDRQAEILTEDALAFLGRLHRVAEDRRRRLLEEREFTRQRITEGWDPHFLRATKRVREDDSWRVAPLAPGLKDRRVEITGPVDRKMTVNALNSGASGWLADFEDSSTPSWERMLDGQVNLYDAIRGQIDFTSPEGKEYRLRGAELTDRPTIIVRPRGWHLTDDHLRVDGEPMAGGLVDFGLYFFHNAAELVRRGHGPYFYLPKLESHLEARLWNCVFVAAQDALGIPQGTIRATVLIETITAAFQMEEILYQLRNHAAGLNAGRWDYIFSLIKNYRDRGPAYVLPDRAEVTMTQPMMRSYTEQLVRACHRRGASAIGGMSAVIPDRRDQAANEVAFAKVREDKTREARDGFDGSWVAHPDLVPVAREVFDEVLGEAPNQIRTRRREDVEPDEAGLLDVAATTGSVTEAGVRRNIEVGMRYIESWLRGQGAAAIHGLMEDAATAEISRSQVWQWAHNRTAVALEDGGTRTASREWMEQLVREEHARILAGPLPEGHRFEDARRVFCESALPPEYPAFLTLGAYRRHFSAERA

Samples

Sample ID Description Type Environment
1 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
2 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
3 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
4 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
5 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
6 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
7 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
8 2643221548 Streptomyces sp. Root55 Isolate Unclassified
9 2643221578 Streptomyces sp. Root63 Isolate Unclassified
10 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
11 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
12 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
13 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
14 2654587600 Glutamicibacter halophytocola KLBMP5180 Isolate Unclassified
15 2690315906 Arthrobacter sp. OY3WO11 Isolate Unclassified
16 2775506735 Arthrobacter sp. S95 1704 Isolate Unclassified
17 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
18 2808606360 Arthrobacter sp. SLBN-112 Isolate Unclassified
19 2808606366 Arthrobacter sp. SLBN-83 Isolate Unclassified
20 2808606370 Arthrobacter sp. SLBN-100 Isolate Unclassified
21 2808606371 Arthrobacter sp. SLBN-53 Isolate Unclassified
22 2808606448 Streptomyces sp. 193411 Isolate Unclassified
23 2811994871 Arthrobacter sp. SLBN-179 Isolate Unclassified
24 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
25 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
26 2837183177 Egibacter rhizosphaerae EGI 80759 Isolate Unclassified
27 2844849076 Arthrobacter cupressi DSM 24664 Isolate Rhizosphere
28 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
29 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
30 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
31 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
32 2857740372 Paenarthrobacter sp. R-74611 Isolate Unclassified
33 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
34 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
35 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
36 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
37 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
38 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
39 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
40 2904497146 Arthrobacter sp. 1276 Isolate Rhizosphere
41 2904776348 Paenarthrobacter sp. 1092 Isolate Rhizosphere
42 2919034639 Paenarthrobacter nitroguajacolicus 247 Isolate Rhizosphere
43 2919051321 Sinomonas atrocyanea 1003 Isolate Rhizosphere
44 2919059106 Arthrobacter sp. 1088 Isolate Rhizosphere
45 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
46 2919538618 Paenarthrobacter nitroguajacolicus 3945 Isolate Unclassified
47 2920879853 Kocuria salina CV6 Isolate Unclassified
48 2932426870 Paenarthrobacter sp. 4246 Isolate Rhizosphere
49 2933418574 Jeotgalibacillus campisalis 4120 Isolate Rhizosphere
50 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
51 2939647034 Arthrobacter sp. 2762 Isolate Rhizosphere
52 2939674588 Arthrobacter bambusae 3552 Isolate Rhizosphere
53 2945916053 Arthrobacter ulcerisalmonis W1I2 Isolate Rhizosphere
54 2945920336 Pseudarthrobacter siccitolerans W1I3 Isolate Rhizosphere
55 2945941187 Arthrobacter pascens W1I14 Isolate Rhizosphere
56 2945956166 Arthrobacter globiformus W2I3 Isolate Rhizosphere
57 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
58 2946037020 Arthrobacter sp. W4I7 Isolate Rhizosphere
59 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
60 2946059875 Arthrobacter sp. SLBN-112 Isolate Rhizosphere
61 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
62 2953998280 Pseudarthrobacter sp. W1I19 Isolate Rhizosphere
63 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
64 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
65 2974302888 Pseudarthrobacter sp. SORGH_AS 212 Isolate Unclassified
66 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
67 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
68 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
69 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
70 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
71 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
72 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
73 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
74 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
75 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
76 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
77 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
78 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
79 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
80 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
81 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
82 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
83 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
84 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
85 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
86 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
87 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
88 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
89 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
90 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
91 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
92 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
93 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
94 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
95 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
96 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
97 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
98 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
99 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
100 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
101 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
102 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
103 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
104 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
105 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
106 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
107 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
108 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
109 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
118 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
119 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
120 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
121 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
122 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
123 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
124 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
125 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
126 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
127 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
128 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
129 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
130 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
131 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
132 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
133 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
134 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
135 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
136 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
137 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
138 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
139 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
140 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
141 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
142 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
143 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
144 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
145 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
146 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
147 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
148 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
149 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
150 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
151 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
152 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
153 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
154 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
155 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
156 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
157 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
158 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
159 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
160 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
161 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
162 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
163 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
164 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
165 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
166 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
167 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
168 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
169 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
170 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
171 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
172 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
173 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
174 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
175 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
176 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
177 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
178 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
179 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
180 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
181 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
182 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
183 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
184 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
185 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
186 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
187 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
188 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
189 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
190 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
191 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
192 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
193 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
194 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
195 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
196 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
197 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
198 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
199 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
200 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
201 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
202 8004025490 Arthrobacter wenxiniae AETb3-4 Isolate Rhizosphere
203 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
204 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere
205 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
206 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
207 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 70.68
Metatranscriptomes 0.75
Isolates 28.57

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.76
Nodule 0.38
Rhizoplane 2.26
Rhizosphere 73.68
Stem 0
Stem Tuber 0
Unclassified 19.92

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJQas_1001424 3300000549 Bacteria 3585
2 JGI25152J39213_1003743 3300002773 Bacteria 5082
3 JGI25151J46595_10014769 3300003187 Bacteria 3467
4 JGI25160J50197_1012525 3300003354 Bacteria 2939
5 Ga0006562J51391_1012622 3300003578 Bacteria 3285
6 Ga0006562J51391_1042464 3300003578 Bacteria 7460
7 Ga0055542_1001905 3300003762 Bacteria 8250
8 JGI25405J52794_10006728 3300003911 Bacteria 2104
9 Ga0070658_10019139 3300005327 Bacteria 5485
10 Ga0070676_10004087 3300005328 Bacteria 7676
11 Ga0070666_10052424 3300005335 Bacteria 2749
12 Ga0070713_100051261 3300005436 Bacteria 3412
13 Ga0070707_100145305 3300005468 Bacteria 2308
14 Ga0070699_100183083 3300005518 Bacteria 1859
15 Ga0070704_100041218 3300005549 Bacteria 3185
16 Ga0068857_100002900 3300005577 Bacteria 14118
17 Ga0068864_100102013 3300005618 Bacteria 2546
18 Ga0068862_100000275 3300005844 Bacteria 57657
19 Ga0068862_100099886 3300005844 Bacteria 2537
20 Ga0081455_10000556 3300005937 Bacteria 48587
21 Ga0081455_10000619 3300005937 Bacteria 46060
22 Ga0081455_10012092 3300005937 Bacteria 8628
23 Ga0081539_10000221 3300005985 Bacteria 133216
24 Ga0075363_100027040 3300006048 Bacteria 2939
25 Ga0075432_10009624 3300006058 Bacteria 3290
26 Ga0075430_100058450 3300006846 Bacteria 3242
27 Ga0075430_100064701 3300006846 Bacteria 3072
28 Ga0075431_100102349 3300006847 Bacteria 2956
29 Ga0075429_100024402 3300006880 Bacteria 5246
30 Ga0075429_100070473 3300006880 Bacteria 3044
31 Ga0099826_10036280 3300006948 Bacteria 3491
32 Ga0105251_10004858 3300009011 Bacteria 8976
33 Ga0105245_10009915 3300009098 Bacteria 8297
34 Ga0114129_10002753 3300009147 Bacteria 24490
35 Ga0105243_10039354 3300009148 Bacteria 3685
36 Ga0105243_10155886 3300009148 Bacteria 1964
37 Ga0105248_10006252 3300009177 Bacteria 13057
38 Ga0105249_10016647 3300009553 Bacteria 6525
39 Ga0105246_10012850 3300011119 Bacteria 5236
40 Ga0157370_10088350 3300013104 Bacteria 2911
41 Ga0157376_10045228 3300014969 Bacteria 3623
42 Ga0163161_10073476 3300017792 Bacteria 2506
43 Ga0213876_10007340 3300021384 Bacteria 5997
44 Ga0213876_10066325 3300021384 Bacteria 1905
45 Ga0209129_1000159 3300025258 Bacteria 103426
46 Ga0209025_1000211 3300025294 Bacteria 139109
47 Ga0207426_1000531 3300025302 Bacteria 55031
48 Ga0209051_1010516 3300025303 Bacteria 4662
49 Ga0207692_10030817 3300025898 Bacteria 2562
50 Ga0207645_10002208 3300025907 Bacteria 15537
51 Ga0207695_10097235 3300025913 Bacteria 2945
52 Ga0207709_10008541 3300025935 Bacteria 5663
53 Ga0207691_10003084 3300025940 Bacteria 16259
54 Ga0207712_10004266 3300025961 Bacteria 9018
55 Ga0207683_10008930 3300026121 Bacteria 8539
56 Ga0268265_10000191 3300028380 Bacteria 72200
57 Ga0307515_10000055 3300028794 Bacteria 264365
58 Ga0307513_10000001 3300031456 Bacteria 1660464
59 Ga0307513_10006375 3300031456 Bacteria 15424
60 Ga0307513_10041394 3300031456 Bacteria 5085
61 Ga0307408_100000619 3300031548 Bacteria 30141
62 Ga0307408_100004430 3300031548 Bacteria 9533
63 Ga0307408_100055931 3300031548 Bacteria 2859
64 Ga0307508_10011363 3300031616 Bacteria 8143
65 Ga0307405_10004981 3300031731 Bacteria 6347
66 Ga0307405_10031995 3300031731 Bacteria 3103
67 Ga0307405_10063553 3300031731 Bacteria 2342
68 Ga0307413_10060365 3300031824 Bacteria 2334
69 Ga0307410_10000111 3300031852 Bacteria 28496
70 Ga0307406_10000655 3300031901 Bacteria 19636
71 Ga0307406_10104194 3300031901 Bacteria 1939
72 Ga0307407_10006013 3300031903 Bacteria 5343
73 Ga0307407_10015690 3300031903 Bacteria 3754
74 Ga0307412_10000141 3300031911 Bacteria 51794
75 Ga0307412_10002267 3300031911 Bacteria 10642
76 Ga0307412_10030442 3300031911 Bacteria 3399
77 Ga0307412_10075184 3300031911 Bacteria 2316
78 Ga0307409_100001895 3300031995 Bacteria 10661
79 Ga0307409_100027609 3300031995 Bacteria 4026
80 Ga0307409_100128775 3300031995 Bacteria 2158
81 Ga0307409_100147753 3300031995 Bacteria 2035
82 Ga0307416_100000852 3300032002 Bacteria 16054
83 Ga0307416_100007771 3300032002 Bacteria 6854
84 Ga0307416_100103421 3300032002 Bacteria 2486
85 Ga0307416_100117051 3300032002 Bacteria 2364
86 Ga0307416_100128499 3300032002 Bacteria 2275
87 Ga0307416_100148581 3300032002 Bacteria 2145
88 Ga0307415_100026260 3300032126 Bacteria 3670
89 Ga0307510_10097146 3300033180 Bacteria 2757
90 Ga0373929_0000007 3300035085 Bacteria 315743
91 Ga0373935_0053498 3300035692 Bacteria 2568
92 Ga0373927_0031109 3300035695 Bacteria 3481
93 Ga0395899_0005911 3300037312 Bacteria 9499
94 Ga0395899_0025561 3300037312 Bacteria 4457
95 Ga0395900_0047539 3300037418 Bacteria 4418
96 Ga0395900_0116045 3300037418 Bacteria 2747
97 Ga0395898_0001647 3300037466 Bacteria 30147
98 Ga0395898_0027820 3300037466 Bacteria 5669
99 Ga0395898_0084528 3300037466 Bacteria 3059
100 Ga0395905_0072949 3300037471 Bacteria 3218
101 Ga0395905_0076395 3300037471 Bacteria 3139
102 Ga0395905_0115192 3300037471 Bacteria 2526
103 Ga0436364_0575883 3300037853 Bacteria 5370
104 Ga0395901_0030372 3300038443 Bacteria 5567
105 Ga0395901_0130225 3300038443 Bacteria 2643
106 Ga0436365_0321202 3300039437 Bacteria 2859
107 Ga0436365_0830384 3300039437 Bacteria 17524
108 Ga0436365_0889287 3300039437 Bacteria 6925
109 Ga0436365_1041842 3300039437 Bacteria 7611
110 Ga0436365_1845859 3300039437 Bacteria 6442
111 Ga0436363_0749667 3300039450 Bacteria 4210
112 Ga0436363_1679397 3300039450 Bacteria 7523
113 Ga0439442_000157 3300042002 Bacteria 17057
114 Ga0439442_000782 3300042002 Bacteria 6626
115 Ga0439442_008168 3300042002 Bacteria 2113
116 Ga0439449_0000165 3300042007 Bacteria 22755
117 Ga0439449_0009026 3300042007 Bacteria 3782
118 Ga0439449_0010540 3300042007 Bacteria 3492
119 Ga0439457_003186 3300042014 Bacteria 4519
120 Ga0439462_0011519 3300042015 Bacteria 2252
121 Ga0439463_001129 3300042016 Bacteria 7160
122 Ga0450920_000099 3300042122 Bacteria 11276
123 Ga0450890_003276 3300042127 Bacteria 2160
124 Ga0450907_000239 3300042146 Bacteria 18900
125 Ga0439434_0000381 3300042435 Bacteria 12605
126 Ga0466972_0055593 3300044658 Bacteria 1904
127 Ga0466966_0097949 3300044684 Bacteria 1816
128 Ga0466968_0013479 3300044735 Bacteria 3215
129 Ga0451576_0099068 3300045051 Bacteria 3032
130 Ga0451576_0128549 3300045051 Bacteria 2640
131 Ga0495603_0003120 3300046455 Bacteria 9849
132 Ga0495603_0004675 3300046455 Bacteria 8181
133 Ga0495629_0001457 3300046459 Bacteria 18666
134 Ga0495629_0008362 3300046459 Bacteria 7611
135 Ga0495653_0007063 3300046463 Bacteria 9215
136 Ga0495639_0041203 3300046475 Bacteria 2080
137 Ga0495662_0022501 3300046476 Bacteria 3043
138 Ga0495664_0007542 3300046477 Bacteria 6048
139 Ga0495594_0003899 3300046499 Bacteria 7675
140 Ga0495594_0018370 3300046499 Bacteria 3702
141 Ga0495643_0027951 3300046522 Bacteria 3166
142 Ga0495665_0008317 3300046531 Bacteria 5624
143 Ga0495586_0003783 3300046535 Bacteria 8109
144 Ga0495586_0021734 3300046535 Bacteria 3422
145 Ga0495587_0009825 3300046536 Bacteria 6111
146 Ga0495656_0006480 3300046615 Bacteria 4109
147 Ga0495588_0004810 3300046674 Bacteria 5977
148 Ga0495588_0038296 3300046674 Bacteria 2438
149 Ga0495588_0107193 3300046674 Bacteria 1471
150 Ga0495613_0001724 3300046689 Bacteria 16647
151 Ga0495670_0003749 3300046691 Bacteria 7479
152 Ga0495670_0024511 3300046691 Bacteria 2982
153 Ga0495600_0036017 3300046809 Bacteria 3215
154 Ga0495581_0000566 3300047315 Bacteria 19224
155 Ga0495581_0028887 3300047315 Bacteria 3215
156 Ga0495581_0046661 3300047315 Bacteria 2504
157 Ga0495604_0065950 3300047317 Bacteria 2755
158 Ga0495684_0067643 3300047471 Bacteria 2717
159 Ga0495614_0015454 3300048089 Bacteria 3327
160 Ga0496103_0104705 3300048906 Bacteria 1793
161 Ga0496108_0279440 3300048911 Bacteria 1453
162 Ga0496110_0122558 3300048913 Bacteria 2343
163 Ga0496111_0108173 3300048914 Bacteria 2047
164 Ga0496114_0000020 3300048917 Bacteria 238645
165 Ga0496114_0021152 3300048917 Bacteria 5289
166 Ga0496122_0002352 3300048925 Bacteria 27214
167 Ga0496123_0004086 3300048926 Bacteria 15707
168 Ga0496126_0006180 3300048929 Bacteria 13406
169 Ga0501032_0010922 3300049569 Bacteria 6527
170 Ga0501032_0094147 3300049569 Bacteria 1986
171 Ga0501033_0019998 3300049570 Bacteria 5060
172 Ga0501034_0000057 3300049571 Bacteria 202455
173 Ga0501038_0000221 3300049574 Bacteria 48754
174 Ga0501039_0043564 3300049575 Bacteria 3466
175 Ga0501042_0003178 3300049578 Bacteria 10246
176 Ga0501043_0051859 3300049579 Bacteria 3223
177 Ga0501047_0029137 3300049581 Bacteria 5324
178 Ga0501067_0007304 3300049583 Bacteria 6136
179 Ga0501083_0000057 3300049744 Bacteria 81628
180 nmdc:mga05p37_153308_c1 3300050507 Bacteria 2817
181 nmdc:mga09592_196699_c1 3300050508 Bacteria 1745
182 nmdc:mga0qj67_29499_c1 3300050509 Bacteria 4261
183 nmdc:mga0qj67_65324_c1 3300050509 Bacteria 2897
184 nmdc:mga0n895_12580_c1 3300050512 Bacteria 7596
185 nmdc:mga0n895_234457_c1 3300050512 Bacteria 1863
186 nmdc:mga0n895_65673_c1 3300050512 Bacteria 3592
187 nmdc:mga0rr50_82907_c1 3300050513 Bacteria 2478
188 nmdc:mga08x19_28967_c1 3300050514 Bacteria 3472
189 Ga0495619_0000378 3300053085 Bacteria 30722
190 Ga0500616_0000113 3300053153 Bacteria 150722

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050508 nmdc:mga09592_196699_c1 nmdc:mga09592_196699_c1_455_1732 418
2 3300046674 Ga0495588_0107193 Ga0495588_0107193_139_1461 431
3 3300046477 Ga0495664_0007542 Ga0495664_0007542_4651_6033 460
4 3300047315 Ga0495581_0028887 Ga0495581_0028887_1789_3171 460
5 3300047317 Ga0495604_0065950 Ga0495604_0065950_1278_2660 460
6 3300048911 Ga0496108_0279440 Ga0496108_0279440_41_1423 460
7 3300025913 Ga0207695_10097235 Ga0207695_100972352 463
8 3300048929 Ga0496126_0006180 Ga0496126_0006180_9974_11431 463
9 3300048917 Ga0496114_0000020 Ga0496114_0000020_64288_65868 500
10 3300005468 Ga0070707_100145305 Ga0070707_1001453052 507
11 3300039450 Ga0436363_0749667 Ga0436363_0749667_2564_4126 507
12 3300009098 Ga0105245_10009915 Ga0105245_100099152 509
13 3300005844 Ga0068862_100099886 Ga0068862_1000998862 512
14 3300009148 Ga0105243_10155886 Ga0105243_101558862 512
15 3300009553 Ga0105249_10016647 Ga0105249_100166474 512
16 3300014969 Ga0157376_10045228 Ga0157376_100452283 512
17 3300025961 Ga0207712_10004266 Ga0207712_100042664 512
18 3300045051 Ga0451576_0128549 Ga0451576_0128549_25_1569 512
19 3300048925 Ga0496122_0002352 Ga0496122_0002352_7032_8636 512
20 3300048926 Ga0496123_0004086 Ga0496123_0004086_11097_12701 512
21 iso_pu_bacteria 2558860112 2558910847 514
22 iso_pu_bacteria 2870782633 2870784824 514
23 3300005937 Ga0081455_10012092 Ga0081455_100120922 517
24 3300006846 Ga0075430_100064701 Ga0075430_1000647012 517
25 3300006880 Ga0075429_100070473 Ga0075429_1000704732 517
26 3300050509 nmdc:mga0qj67_65324_c1 nmdc:mga0qj67_65324_c1_265_2073 517
27 3300050512 nmdc:mga0n895_234457_c1 nmdc:mga0n895_234457_c1_33_1598 517
28 3300050512 nmdc:mga0n895_65673_c1 nmdc:mga0n895_65673_c1_773_2338 517
29 3300050514 nmdc:mga08x19_28967_c1 nmdc:mga08x19_28967_c1_1465_3030 517
30 3300005844 Ga0068862_100000275 Ga0068862_10000027519 518
31 3300006846 Ga0075430_100058450 Ga0075430_1000584502 518
32 3300006847 Ga0075431_100102349 Ga0075431_1001023492 518
33 3300009147 Ga0114129_10002753 Ga0114129_100027532 518
34 3300028380 Ga0268265_10000191 Ga0268265_1000019139 518
35 3300031456 Ga0307513_10041394 Ga0307513_100413944 518
36 3300050509 nmdc:mga0qj67_29499_c1 nmdc:mga0qj67_29499_c1_1344_2921 518
37 iso_pu_bacteria 8056667051 8056667196 518
38 3300035692 Ga0373935_0053498 Ga0373935_0053498_434_2014 519
39 3300049583 Ga0501067_0007304 Ga0501067_0007304_2674_4242 519
40 iso_pu_bacteria 2837183177 2837187001 521
41 3300006880 Ga0075429_100024402 Ga0075429_1000244023 522
42 3300025898 Ga0207692_10030817 Ga0207692_100308171 522
43 3300047315 Ga0495581_0046661 Ga0495581_0046661_911_2485 522
44 3300050507 nmdc:mga05p37_153308_c1 nmdc:mga05p37_153308_c1_997_2586 522
45 3300005328 Ga0070676_10004087 Ga0070676_100040875 523
46 3300005549 Ga0070704_100041218 Ga0070704_1000412182 523
47 3300005577 Ga0068857_100002900 Ga0068857_1000029009 523
48 3300005985 Ga0081539_10000221 Ga0081539_1000022145 523
49 3300017792 Ga0163161_10073476 Ga0163161_100734762 523
50 3300035085 Ga0373929_0000007 Ga0373929_0000007_196063_197646 523
51 3300039437 Ga0436365_1845859 Ga0436365_1845859_3417_5012 523
52 iso_pu_bacteria 2862178590 2862183900 523
53 iso_pu_bacteria 3006486233 3006491825 523
54 3300003911 JGI25405J52794_10006728 JGI25405J52794_100067281 524
55 3300005937 Ga0081455_10000556 Ga0081455_1000055649 524
56 3300021384 Ga0213876_10007340 Ga0213876_100073407 524
57 3300021384 Ga0213876_10066325 Ga0213876_100663252 524
58 3300037853 Ga0436364_0575883 Ga0436364_0575883_2036_3631 524
59 3300039437 Ga0436365_0321202 Ga0436365_0321202_580_2178 524
60 3300039437 Ga0436365_0830384 Ga0436365_0830384_4307_5905 524
61 3300039437 Ga0436365_0889287 Ga0436365_0889287_3335_4930 524
62 3300039437 Ga0436365_1041842 Ga0436365_1041842_2826_4424 524
63 3300039450 Ga0436363_1679397 Ga0436363_1679397_3180_4778 524
64 iso_pu_bacteria 2547132111 2547411947 524
65 iso_pu_bacteria 2554235005 2554260631 524
66 iso_pu_bacteria 2582581312 2585298819 524
67 iso_pu_bacteria 2616644941 2616902605 524
68 iso_pu_bacteria 2643221548 2643761960 524
69 iso_pu_bacteria 2643221578 2643903884 524
70 iso_pu_bacteria 2643221587 2643942834 524
71 iso_pu_bacteria 2643221673 2644402236 524
72 iso_pu_bacteria 2643221677 2644430293 524
73 iso_pu_bacteria 2643221682 2644460613 524
74 iso_pu_bacteria 2784132148 2784591389 524
75 iso_pu_bacteria 2808606448 2809234991 524
76 iso_pu_bacteria 2811994879 2812355008 524
77 iso_pu_bacteria 2818991463 2819698393 524
78 iso_pu_bacteria 2852635781 2852638550 524
79 iso_pu_bacteria 2873151551 2873153190 524
80 iso_pu_bacteria 2875391855 2875397548 524
81 iso_pu_bacteria 2946045630 2946046962 524
82 iso_pu_bacteria 2946064051 2946070891 524
83 iso_pu_bacteria 2954002825 2954010041 524
84 iso_pu_bacteria 2966598605 2966599980 524
85 iso_pu_bacteria 2997451912 2997457622 524
86 iso_pu_bacteria 3006493962 3006497865 524
87 iso_pu_bacteria 8023623736 8023628101 524
88 iso_pu_bacteria 8054160619 8054161810 524
89 3300005327 Ga0070658_10019139 Ga0070658_100191393 525
90 3300005436 Ga0070713_100051261 Ga0070713_1000512612 526
91 3300005518 Ga0070699_100183083 Ga0070699_1001830831 526
92 3300005618 Ga0068864_100102013 Ga0068864_1001020133 526
93 3300037471 Ga0395905_0072949 Ga0395905_0072949_1095_2684 526
94 3300044735 Ga0466968_0013479 Ga0466968_0013479_1438_3039 526
95 3300053085 Ga0495619_0000378 Ga0495619_0000378_3444_5246 526
96 3300044658 Ga0466972_0055593 Ga0466972_0055593_126_1748 527
97 iso_pu_bacteria 2868088558 2868091222 527
98 3300003354 JGI25160J50197_1012525 JGI25160J50197_10125251 528
99 3300003578 Ga0006562J51391_1042464 Ga0006562J51391_10424643 528
100 3300006048 Ga0075363_100027040 Ga0075363_1000270403 528
101 3300006948 Ga0099826_10036280 Ga0099826_100362802 528
102 3300025302 Ga0207426_1000531 Ga0207426_10005313 528
103 3300028794 Ga0307515_10000055 Ga0307515_10000055214 528
104 3300031456 Ga0307513_10006375 Ga0307513_100063755 528
105 3300031616 Ga0307508_10011363 Ga0307508_100113633 528
106 3300032002 Ga0307416_100148581 Ga0307416_1001485812 528
107 3300033180 Ga0307510_10097146 Ga0307510_100971462 528
108 3300042007 Ga0439449_0000165 Ga0439449_0000165_19728_21362 528
109 3300042014 Ga0439457_003186 Ga0439457_003186_475_2100 528
110 3300042015 Ga0439462_0011519 Ga0439462_0011519_440_2065 528
111 3300042127 Ga0450890_003276 Ga0450890_003276_125_1759 528
112 3300046455 Ga0495603_0003120 Ga0495603_0003120_2575_4206 528
113 3300046455 Ga0495603_0004675 Ga0495603_0004675_6379_7998 528
114 3300046459 Ga0495629_0001457 Ga0495629_0001457_14378_15997 528
115 3300046459 Ga0495629_0008362 Ga0495629_0008362_5133_6752 528
116 3300046499 Ga0495594_0003899 Ga0495594_0003899_1017_2636 528
117 3300046499 Ga0495594_0018370 Ga0495594_0018370_1980_3602 528
118 3300046689 Ga0495613_0001724 Ga0495613_0001724_11420_13039 528
119 3300048089 Ga0495614_0015454 Ga0495614_0015454_314_1933 528
120 3300049574 Ga0501038_0000221 Ga0501038_0000221_29002_30636 528
121 3300045051 Ga0451576_0099068 Ga0451576_0099068_342_1955 529
122 3300050512 nmdc:mga0n895_12580_c1 nmdc:mga0n895_12580_c1_1100_2713 529
123 3300050513 nmdc:mga0rr50_82907_c1 nmdc:mga0rr50_82907_c1_379_2193 529
124 3300042016 Ga0439463_001129 Ga0439463_001129_4085_5686 530
125 3300047471 Ga0495684_0067643 Ga0495684_0067643_125_1726 530
126 3300005937 Ga0081455_10000619 Ga0081455_1000061925 531
127 3300031548 Ga0307408_100004430 Ga0307408_1000044305 531
128 3300031852 Ga0307410_10000111 Ga0307410_1000011127 531
129 3300031901 Ga0307406_10000655 Ga0307406_1000065519 531
130 3300031903 Ga0307407_10015690 Ga0307407_100156902 531
131 3300031995 Ga0307409_100001895 Ga0307409_1000018953 531
132 3300032002 Ga0307416_100000852 Ga0307416_1000008525 531
133 3300032126 Ga0307415_100026260 Ga0307415_1000262601 531
134 3300031901 Ga0307406_10104194 Ga0307406_101041942 532
135 3300035695 Ga0373927_0031109 Ga0373927_0031109_533_2173 535
136 iso_pu_bacteria 2857737099 2857738954 535
137 iso_pu_bacteria 2946024296 2946024560 535
138 iso_pu_bacteria 8056054917 8056055266 535
139 3300031456 Ga0307513_10000001 Ga0307513_100000011515 536
140 3300049570 Ga0501033_0019998 Ga0501033_0019998_1466_3100 536
141 3300049578 Ga0501042_0003178 Ga0501042_0003178_2373_4007 536
142 3300049581 Ga0501047_0029137 Ga0501047_0029137_585_2219 536
143 3300049744 Ga0501083_0000057 Ga0501083_0000057_72360_73994 536
144 iso_pu_bacteria 2554235227 2555230198 538
145 iso_pu_bacteria 2654587600 2655031230 538
146 3300031731 Ga0307405_10031995 Ga0307405_100319951 539
147 3300031903 Ga0307407_10006013 Ga0307407_100060132 539
148 3300031911 Ga0307412_10075184 Ga0307412_100751842 539
149 3300031995 Ga0307409_100128775 Ga0307409_1001287752 539
150 3300032002 Ga0307416_100103421 Ga0307416_1001034212 539
151 3300042007 Ga0439449_0009026 Ga0439449_0009026_168_1793 539
152 iso_pu_bacteria 2870801768 2870803602 540
153 3300053153 Ga0500616_0000113 Ga0500616_0000113_43959_45602 541
154 iso_pu_bacteria 2857479173 2857480788 542
155 iso_pu_bacteria 2857632687 2857633922 542
156 iso_pu_bacteria 2870804320 2870805559 542
157 iso_pu_bacteria 2945941187 2945942721 542
158 3300002773 JGI25152J39213_1003743 JGI25152J39213_10037434 546
159 3300003187 JGI25151J46595_10014769 JGI25151J46595_100147692 546
160 3300025258 Ga0209129_1000159 Ga0209129_100015970 546
161 3300025294 Ga0209025_1000211 Ga0209025_100021140 546
162 iso_pu_bacteria 2690315906 2691512590 546
163 iso_pu_bacteria 2775506735 2775657648 546
164 iso_pu_bacteria 2808606360 2808851017 546
165 iso_pu_bacteria 2808606366 2808876473 546
166 iso_pu_bacteria 2808606370 2808894099 546
167 iso_pu_bacteria 2808606371 2808897983 546
168 iso_pu_bacteria 2811994871 2812318466 546
169 iso_pu_bacteria 2844849076 2844851497 546
170 iso_pu_bacteria 2857740372 2857741756 546
171 iso_pu_bacteria 2904497146 2904497771 546
172 iso_pu_bacteria 2904776348 2904778781 546
173 iso_pu_bacteria 2919034639 2919038128 546
174 iso_pu_bacteria 2919059106 2919063181 546
175 iso_pu_bacteria 2919538618 2919539556 546
176 iso_pu_bacteria 2932426870 2932431153 546
177 iso_pu_bacteria 2933418574 2933419948 546
178 iso_pu_bacteria 2939598168 2939600738 546
179 iso_pu_bacteria 2939647034 2939647278 546
180 iso_pu_bacteria 2939674588 2939676633 546
181 iso_pu_bacteria 2945916053 2945916223 546
182 iso_pu_bacteria 2945920336 2945923654 546
183 iso_pu_bacteria 2945941187 2945944672 546
184 iso_pu_bacteria 2946037020 2946040620 546
185 iso_pu_bacteria 2946059875 2946060023 546
186 iso_pu_bacteria 2953998280 2954001867 546
187 iso_pu_bacteria 2974302888 2974304170 546
188 iso_pu_bacteria 8054107350 8054108200 546
189 3300003762 Ga0055542_1001905 Ga0055542_10019053 547
190 iso_pu_bacteria 2537561592 2537898533 547
191 3300031824 Ga0307413_10060365 Ga0307413_100603651 549
192 3300009148 Ga0105243_10039354 Ga0105243_100393542 550
193 3300011119 Ga0105246_10012850 Ga0105246_100128502 550
194 3300025303 Ga0209051_1010516 Ga0209051_10105162 550
195 3300025935 Ga0207709_10008541 Ga0207709_100085412 550
196 3300031548 Ga0307408_100000619 Ga0307408_10000061912 550
197 3300031731 Ga0307405_10004981 Ga0307405_100049812 550
198 3300031911 Ga0307412_10000141 Ga0307412_1000014118 550
199 3300031911 Ga0307412_10002267 Ga0307412_100022672 550
200 3300031911 Ga0307412_10030442 Ga0307412_100304422 550
201 3300032002 Ga0307416_100117051 Ga0307416_1001170512 550
202 3300037312 Ga0395899_0025561 Ga0395899_0025561_330_1982 550
203 3300037466 Ga0395898_0084528 Ga0395898_0084528_990_2642 550
204 3300042002 Ga0439442_000157 Ga0439442_000157_7171_8823 550
205 3300042002 Ga0439442_000782 Ga0439442_000782_374_2035 550
206 3300042002 Ga0439442_008168 Ga0439442_008168_114_1766 550
207 3300042122 Ga0450920_000099 Ga0450920_000099_6445_8097 550
208 3300042146 Ga0450907_000239 Ga0450907_000239_3503_5155 550
209 3300042435 Ga0439434_0000381 Ga0439434_0000381_6095_7747 550
210 3300049569 Ga0501032_0010922 Ga0501032_0010922_928_2580 550
211 3300049569 Ga0501032_0094147 Ga0501032_0094147_79_1731 550
212 3300049571 Ga0501034_0000057 Ga0501034_0000057_100721_102373 550
213 3300049575 Ga0501039_0043564 Ga0501039_0043564_369_2021 550
214 3300049579 Ga0501043_0051859 Ga0501043_0051859_362_2014 550
215 iso_pu_bacteria 2919051321 2919054842 550
216 iso_pu_bacteria 2919391150 2919391791 550
217 iso_pu_bacteria 2945956166 2945957120 550
218 iso_pu_bacteria 8004021418 8004022366 550
219 iso_pu_bacteria 8004025490 8004027909 550
220 3300013104 Ga0157370_10088350 Ga0157370_100883502 551
221 iso_pu_bacteria 2920879853 2920882909 551
222 3300046531 Ga0495665_0008317 Ga0495665_0008317_3035_4696 553
223 3300000549 LJQas_1001424 LJQas_10014242 554
224 3300003578 Ga0006562J51391_1012622 Ga0006562J51391_10126222 554
225 3300005335 Ga0070666_10052424 Ga0070666_100524241 554
226 3300006058 Ga0075432_10009624 Ga0075432_100096242 554
227 3300009011 Ga0105251_10004858 Ga0105251_100048582 554
228 3300009177 Ga0105248_10006252 Ga0105248_100062524 554
229 3300025907 Ga0207645_10002208 Ga0207645_100022085 554
230 3300025940 Ga0207691_10003084 Ga0207691_1000308412 554
231 3300026121 Ga0207683_10008930 Ga0207683_100089306 554
232 3300031548 Ga0307408_100055931 Ga0307408_1000559311 554
233 3300031731 Ga0307405_10063553 Ga0307405_100635532 554
234 3300031995 Ga0307409_100027609 Ga0307409_1000276092 554
235 3300031995 Ga0307409_100147753 Ga0307409_1001477531 554
236 3300032002 Ga0307416_100007771 Ga0307416_1000077716 554
237 3300032002 Ga0307416_100128499 Ga0307416_1001284991 554
238 3300037312 Ga0395899_0005911 Ga0395899_0005911_4075_5757 554
239 3300037418 Ga0395900_0047539 Ga0395900_0047539_1899_3581 554
240 3300037418 Ga0395900_0116045 Ga0395900_0116045_569_2251 554
241 3300037466 Ga0395898_0001647 Ga0395898_0001647_14003_15682 554
242 3300037466 Ga0395898_0027820 Ga0395898_0027820_2494_4176 554
243 3300037471 Ga0395905_0076395 Ga0395905_0076395_205_1887 554
244 3300037471 Ga0395905_0115192 Ga0395905_0115192_316_1998 554
245 3300038443 Ga0395901_0030372 Ga0395901_0030372_3376_5058 554
246 3300038443 Ga0395901_0130225 Ga0395901_0130225_920_2599 554
247 3300042007 Ga0439449_0010540 Ga0439449_0010540_126_1796 554
248 3300044684 Ga0466966_0097949 Ga0466966_0097949_10_1689 554
249 3300046463 Ga0495653_0007063 Ga0495653_0007063_2339_4003 554
250 3300046475 Ga0495639_0041203 Ga0495639_0041203_242_1906 554
251 3300046476 Ga0495662_0022501 Ga0495662_0022501_282_1946 554
252 3300046522 Ga0495643_0027951 Ga0495643_0027951_1332_2996 554
253 3300046535 Ga0495586_0003783 Ga0495586_0003783_6293_7957 554
254 3300046535 Ga0495586_0021734 Ga0495586_0021734_1085_2749 554
255 3300046536 Ga0495587_0009825 Ga0495587_0009825_3336_5000 554
256 3300046615 Ga0495656_0006480 Ga0495656_0006480_339_2003 554
257 3300046674 Ga0495588_0004810 Ga0495588_0004810_745_2409 554
258 3300046674 Ga0495588_0038296 Ga0495588_0038296_171_1835 554
259 3300046691 Ga0495670_0003749 Ga0495670_0003749_2231_3895 554
260 3300046691 Ga0495670_0024511 Ga0495670_0024511_1251_2915 554
261 3300046809 Ga0495600_0036017 Ga0495600_0036017_1108_2772 554
262 3300047315 Ga0495581_0000566 Ga0495581_0000566_12189_13853 554
263 3300048906 Ga0496103_0104705 Ga0496103_0104705_47_1711 554
264 3300048913 Ga0496110_0122558 Ga0496110_0122558_275_1939 554
265 3300048914 Ga0496111_0108173 Ga0496111_0108173_347_2011 554
266 3300048917 Ga0496114_0021152 Ga0496114_0021152_3240_4904 554

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01274

MS_TIM-barrel

Malate synthase, TIM barrel domain

205

453

0.99

PF20656

MS_N

Malate synthase, N-terminal domain

48

110

0.96

PF20659

MS_C

Malate synthase, C-terminal

459

580

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
3cux-assembly1.cif.gz_A atomic resolution structures of escherichia coli and bacillis anthracis malate synthase a: comparison with isoform g and implications for structure based drug design 0.973 13 531
3cv2-assembly1.cif.gz_A atomic resolution structures of escherichia coli and bacillis anthracis malate synthase a: comparison with isoform g and implications for structure based drug design 0.9682 13 531
3cux-assembly1.cif.gz_A atomic resolution structures of escherichia coli and bacillis anthracis malate synthase a: comparison with isoform g and implications for structure based drug design 0.9634 13 531
3cv2-assembly1.cif.gz_A atomic resolution structures of escherichia coli and bacillis anthracis malate synthase a: comparison with isoform g and implications for structure based drug design 0.9573 13 531
1sgj-assembly1.cif.gz_C crystal structure of citrate lyase beta subunit 0.8213 91 386
ID Description Score Start End Superfamily
3cuxA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Malate synthase, domain 3 0.989 13 414 3.20.20.360
3cuxA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Malate synthase, domain 3 0.9761 13 414 3.20.20.360
af_Q5APD2_423_540_1.20.1220.12 Mainly Alpha;Up-down Bundle;Malate Synthase G; Chain: A; Domain 4;Malate synthase, domain III 0.9706 421 531 1.20.1220.12
3cv2A02 Mainly Alpha;Up-down Bundle;Malate Synthase G; Chain: A; Domain 4;Malate synthase, domain III 0.9474 422 531 1.20.1220.12
af_A0A0R4IAX5_7_408_3.20.20.360 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Malate synthase, domain 3 0.9448 15 413 3.20.20.360
ID Description Score Start End GO Terms
AF-A0A6N9XW18-F1-model_v4 deleted 1.003 218 296
AF-A9WLG6-F1-model_v4 Malate synthase (EC 2.3.3.9) 0.9987 169 491 GO:0004474
GO:0005737
GO:0006097
GO:0006099
AF-A0A6G3XK42-F1-model_v4 Malate synthase (EC 2.3.3.9) 0.9986 195 392 GO:0004474
GO:0005737
GO:0006097
GO:0006099
AF-A0A0K2QXZ3-F1-model_v4 deleted 0.9985 195 297
AF-A0A365CWD9-F1-model_v4 Malate synthase (EC 2.3.3.9) 0.9982 200 411 GO:0004474
GO:0005737
GO:0006097
GO:0006099

Feature Viewer

pLDDT pTM Quality
92.34 0.91 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map