F374699
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 267 | 203 | 534 | 362 |
Family's Representative Sequence
| Representative Sequence | 3300007788|Ga0099795_10035861|Ga0099795_100358611 |
| Length | 417 |
| Sequence | MGRSAGGRGDRDEIGKGAGPVIDSALSIPRHAVSREPLSRLANDREGAEMWTEECAEGASPGALRKIIHIDMDAFYASVEQRDNPELRGQPVAVGGSQERGVVAAASYEARKFGVHSAMPSVIAKRKCPGLIFVKPRFDAYKAVSLQIWEIFAEYTPIIEPLSLDEAYLDVTENLKGIVSATWIAKEIRVRIRAETQLTASAGVSYNKFLAKLASDHHKPDGLFVITPEMGPAFVETLPVRRFHGIGPATAKKMEQLGIRIGLELRAQSLGLLREHFGKAGSYYYWAARGIDERPVRADRIRKSVGAENTFPVDLFTYEAAQDQLREIVDKVWGYCEHSGTRGRTVTLKVKFANFRQITRSRTGEVAITTRNELEQLGDALLAPLFPVTKGIRLLGISLSSLGTEEAERRFGNPDTL |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300007788 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 | Metagenome | Rhizosphere |
| 2 | 3300002773 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS | Metagenome | Endosphere |
| 3 | 3300003354 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS | Metagenome | Endosphere |
| 4 | 3300003790 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 | Metagenome | Endosphere |
| 5 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 8 | 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Metagenome | Rhizosphere |
| 9 | 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 11 | 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Metagenome | Rhizosphere |
| 13 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 14 | 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Metagenome | Rhizosphere |
| 15 | 3300006177 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 | Metagenome | Endosphere |
| 16 | 3300006946 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG | Metagenome | Nodule |
| 17 | 3300006948 | Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 | Metagenome | Nodule |
| 18 | 3300009011 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG | Metagenome | Rhizosphere |
| 19 | 3300009092 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG | Metagenome | Rhizosphere |
| 20 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 21 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 22 | 3300009763 | Root nodule microbial communities of legume samples collected from Mexico - Siratro Mexico nodule mix | Metagenome | Nodule |
| 23 | 3300009765 | Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule | Metagenome | Nodule |
| 24 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 25 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 26 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 27 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 28 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 29 | 3300015684 | Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 | Metagenome | Unclassified |
| 30 | 3300022739 | Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules | Metagenome | Nodule |
| 31 | 3300022740 | Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules | Metagenome | Nodule |
| 32 | 3300025258 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) | Metagenome | Endosphere |
| 33 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 34 | 3300025294 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 35 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 36 | 3300025299 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 37 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 38 | 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300027111 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) | Metagenome | Nodule |
| 46 | 3300027666 | Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) | Metagenome | Nodule |
| 47 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 48 | 3300031239 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG | Metagenome | Rhizosphere |
| 49 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 50 | 3300031733 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 | Metagenome | Rhizosphere |
| 51 | 3300031967 | Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules | Metagenome | Nodule |
| 52 | 3300032139 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB | Metagenome | Rhizosphere |
| 53 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 54 | 3300033430 | Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules | Metagenome | Nodule |
| 55 | 3300033464 | Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - branched nodules | Metagenome | Nodule |
| 56 | 3300035083 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 | Metagenome | Rhizosphere |
| 57 | 3300035086 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 | Metagenome | Rhizosphere |
| 58 | 3300035117 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 | Metagenome | Rhizosphere |
| 59 | 3300035118 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 | Metagenome | Rhizosphere |
| 60 | 3300035172 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 | Metagenome | Rhizosphere |
| 61 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 62 | 3300035724 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 | Metagenome | Rhizosphere |
| 63 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 64 | 3300036712 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA | Metagenome | Rhizosphere |
| 65 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 66 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 67 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 68 | 3300039438 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 | Metagenome | Rhizosphere |
| 69 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 70 | 3300039450 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 | Metagenome | Unclassified |
| 71 | 3300039453 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 | Metagenome | Rhizosphere |
| 72 | 3300041511 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG | Metagenome | Unclassified |
| 73 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 74 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 75 | 3300046453 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere | Metagenome | Rhizosphere |
| 76 | 3300046472 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere | Metagenome | Rhizosphere |
| 77 | 3300046512 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere | Metagenome | Rhizosphere |
| 78 | 3300046517 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere | Metagenome | Rhizosphere |
| 79 | 3300046522 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere | Metagenome | Rhizosphere |
| 80 | 3300046533 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere | Metagenome | Rhizosphere |
| 81 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 82 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 83 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 84 | 3300046665 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere | Metagenome | Rhizosphere |
| 85 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 86 | 3300046691 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere | Metagenome | Rhizosphere |
| 87 | 3300046692 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere | Metagenome | Rhizosphere |
| 88 | 3300046810 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere | Metagenome | Rhizosphere |
| 89 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 90 | 3300048906 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 | Metagenome | Rhizoplane |
| 91 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 92 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 93 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 94 | 3300048910 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 | Metagenome | Rhizoplane |
| 95 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 96 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 97 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 98 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 99 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 100 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 101 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 102 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 103 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 104 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 105 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 106 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 107 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 108 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 109 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 110 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 111 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 112 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 113 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 114 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 115 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 116 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 117 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 118 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 119 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 120 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 121 | 3300053084 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere | Metagenome | Rhizosphere |
| 122 | 3300053085 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere | Metagenome | Rhizosphere |
| 123 | 3300053107 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere | Metagenome | Endosphere |
| 124 | 3300053111 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere | Metagenome | Endosphere |
| 125 | 3300053125 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere | Metagenome | Endosphere |
| 126 | 3300053137 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere | Metagenome | Endosphere |
| 127 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 128 | 3300053157 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere | Metagenome | Endosphere |
| 129 | 3300053158 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere | Metagenome | Endosphere |
| 130 | 3300053161 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere | Metagenome | Endosphere |
| 131 | 2511231027 | Phyllobacterium sp. YR531 | Isolate | Rhizosphere |
| 132 | 2513237089 | Sinorhizobium medicae DI28 | Isolate | Nodule |
| 133 | 2513237156 | Sinorhizobium medicae WSM1369 | Isolate | Nodule |
| 134 | 2513237164 | Mesorhizobium loti CJ3sym | Isolate | Nodule |
| 135 | 2529292951 | Rhizobium sp. CCGE 510 | Isolate | Nodule |
| 136 | 2582581308 | Rhizobium sp. OK494 | Isolate | Rhizosphere |
| 137 | 2582581866 | Rhizobium sp. CF097 | Isolate | Rhizosphere |
| 138 | 2600255279 | Rhizobium sp. NFIX01 | Isolate | Rhizoplane |
| 139 | 2643221568 | Rhizobium sp. Root564 | Isolate | Unclassified |
| 140 | 2643221688 | Rhizobium sp. Root482 | Isolate | Unclassified |
| 141 | 2657244999 | Sinorhizobium sojae CCBAU 05684 | Isolate | Unclassified |
| 142 | 2791355267 | Rhizobium sp. L18 | Isolate | Nodule |
| 143 | 2802428858 | Sinorhizobium medicae M14-1 | Isolate | Nodule |
| 144 | 2802428859 | Sinorhizobium medicae SF3.41 | Isolate | Nodule |
| 145 | 2802428860 | Sinorhizobium medicae M19-1 | Isolate | Nodule |
| 146 | 2802428861 | Sinorhizobium medicae USDA1037 | Isolate | Nodule |
| 147 | 2802428862 | Sinorhizobium medicae M7-4 | Isolate | Nodule |
| 148 | 2802428863 | Sinorhizobium medicae M26-2 | Isolate | Nodule |
| 149 | 2802429268 | Sinorhizobium sojae CCBAU 05684 | Isolate | Unclassified |
| 150 | 2842775625 | Roseomonas sp. R-71825 | Isolate | Unclassified |
| 151 | 2856364286 | Mesorhizobium sp. M00.F.Ca.ET.151.01.1.1 | Isolate | Nodule |
| 152 | 2869285874 | Mesorhizobium sp. M2D.F.Ca.ET.147.01.1.1 | Isolate | Nodule |
| 153 | 2871429161 | Mesorhizobium sp. M2D.F.Ca.ET.225.01.1.1 | Isolate | Nodule |
| 154 | 2871451962 | Mesorhizobium sp. M7A.F.Ca.US.006.01.1.1 | Isolate | Nodule |
| 155 | 2874146452 | Mesorhizobium sp. M2D.F.Ca.ET.160.01.1.1 | Isolate | Nodule |
| 156 | 2874155637 | Mesorhizobium sp. M2D.F.Ca.ET.224.01.1.1 | Isolate | Nodule |
| 157 | 2874168670 | Mesorhizobium kowhaii Ach-343 | Isolate | Nodule |
| 158 | 2876413966 | Mesorhizobium sp. M2D.F.Ca.ET.233.01.1.1 | Isolate | Nodule |
| 159 | 2878745973 | Mesorhizobium sp. M2D.F.Ca.ET.226.01.1.1 | Isolate | Nodule |
| 160 | 2894817345 | Aureimonas psammosilenae YIM DR1026 | Isolate | Unclassified |
| 161 | 2903492973 | Mesorhizobium sp. M00.F.Ca.ET.220.01.1.1 | Isolate | Nodule |
| 162 | 2906308376 | Mesorhizobium sp. M2D.F.Ca.ET.185.01.1.1 | Isolate | Nodule |
| 163 | 2906321335 | Mesorhizobium sp. M2D.F.Ca.ET.206.01.1.1 | Isolate | Nodule |
| 164 | 2915980308 | Sinorhizobium medicae USDA1149 | Isolate | Nodule |
| 165 | 2916061851 | Sinorhizobium medicae USDA1638 | Isolate | Nodule |
| 166 | 2919166419 | Agrobacterium cavarae 2074 | Isolate | Unclassified |
| 167 | 2921250672 | Sinorhizobium medicae USDA1169 | Isolate | Nodule |
| 168 | 2924733363 | Mesorhizobium sp. M7A.F.Ca.US.011.01.1.1 | Isolate | Nodule |
| 169 | 2933594066 | Agrobacterium fabrum 35/80 | Isolate | Nodule |
| 170 | 2937029754 | Sinorhizobium medicae USDA1624 | Isolate | Nodule |
| 171 | 2937078374 | Sinorhizobium medicae USDA1004 | Isolate | Nodule |
| 172 | 2937084907 | Sinorhizobium medicae USDA1664 | Isolate | Nodule |
| 173 | 2937813078 | Mesorhizobium sp. M2D.F.Ca.ET.223.01.1.1 | Isolate | Nodule |
| 174 | 2937972304 | Mesorhizobium sp. M8A.F.Ca.ET.173.01.1.1 | Isolate | Nodule |
| 175 | 2957375807 | Sinorhizobium medicae USDA1632 | Isolate | Nodule |
| 176 | 2957437181 | Sinorhizobium medicae USDA1694 | Isolate | Nodule |
| 177 | 2958100919 | Mesorhizobium sp. M2A.F.Ca.ET.015.02.1.1 | Isolate | Nodule |
| 178 | 2958130278 | Mesorhizobium sp. M2D.F.Ca.ET.148.01.1.1 | Isolate | Nodule |
| 179 | 2958144490 | Mesorhizobium sp. M8A.F.Ca.ET.021.01.1.1 | Isolate | Nodule |
| 180 | 2958172287 | Mesorhizobium sp. M2A.F.Ca.ET.029.05.1.1 | Isolate | Nodule |
| 181 | 2958179912 | Mesorhizobium sp. M2D.F.Ca.ET.171.01.1.1 | Isolate | Nodule |
| 182 | 2960591022 | Sinorhizobium medicae USDA1066 | Isolate | Nodule |
| 183 | 2960631154 | Sinorhizobium medicae USDA1629 | Isolate | Nodule |
| 184 | 2960680706 | Sinorhizobium medicae USDA1150 | Isolate | Nodule |
| 185 | 2960693952 | Sinorhizobium medicae USDA1630 | Isolate | Nodule |
| 186 | 2961077736 | Mesorhizobium sp. M2D.F.Ca.ET.178.01.1.1 | Isolate | Nodule |
| 187 | 2961114664 | Mesorhizobium sp. M1D.F.Ca.ET.231.01.1.1 | Isolate | Nodule |
| 188 | 2967686174 | Sinorhizobium medicae USDA1641 | Isolate | Nodule |
| 189 | 2968110612 | Mesorhizobium sp. M1D.F.Ca.ET.183.01.1.1 | Isolate | Nodule |
| 190 | 2970143518 | Sinorhizobium medicae USDA1652 | Isolate | Nodule |
| 191 | 2970524798 | Mesorhizobium sp. M5C.F.Ca.ET.164.01.1.1 | Isolate | Nodule |
| 192 | 2977530762 | Sinorhizobium medicae USDA1606 | Isolate | Nodule |
| 193 | 2977544691 | Sinorhizobium medicae USDA1631 | Isolate | Nodule |
| 194 | 2977843712 | Mesorhizobium sp. M2D.F.Ca.ET.140.01.1.1 | Isolate | Nodule |
| 195 | 2977942078 | Mesorhizobium sp. M2E.F.Ca.ET.209.01.1.1 | Isolate | Nodule |
| 196 | 2979710463 | Mesorhizobium sp. M2A.F.Ca.ET.017.03.2.1 | Isolate | Nodule |
| 197 | 2987636660 | Mesorhizobium sp. M2E.F.Ca.ET.154.01.1.1 | Isolate | Nodule |
| 198 | 2989349275 | Shinella kummerowiae CCBAU 25048 | Isolate | Unclassified |
| 199 | 3004203850 | Mesorhizobium sp. M2E.F.Ca.ET.219.01.1.1 | Isolate | Nodule |
| 200 | 8002060224 | Methylocystis sp. Sn-Cys | Isolate | Unclassified |
| 201 | 8003999396 | Sinorhizobium medicae WSM1115 | Isolate | Nodule |
| 202 | 8004387939 | Mesorhizobium sp. M2D.F.Ca.ET.232.01.1.1 | Isolate | Nodule |
| 203 | 8004714634 | Mesorhizobium sp. M2D.F.Ca.ET.153.01.1.1 | Isolate | Nodule |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 72.66 |
| Metatranscriptomes | 0 |
| Isolates | 27.34 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 8.24 |
| Nodule | 28.09 |
| Rhizoplane | 3.37 |
| Rhizosphere | 40.45 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0099795_10035861 | 3300007788 | Bacteria | 1737 |
| 2 | JGI25152J39213_1010966 | 3300002773 | Bacteria | 2032 |
| 3 | JGI25160J50197_1006752 | 3300003354 | Bacteria | 4603 |
| 4 | Ga0055528_1011061 | 3300003790 | Bacteria | 3614 |
| 5 | Ga0070668_100168046 | 3300005347 | Bacteria | 1784 |
| 6 | Ga0070714_100328090 | 3300005435 | Bacteria | 1433 |
| 7 | Ga0070713_100085485 | 3300005436 | Bacteria | 2702 |
| 8 | Ga0070710_10037261 | 3300005437 | Bacteria | 2663 |
| 9 | Ga0070710_10120003 | 3300005437 | Bacteria | 1590 |
| 10 | Ga0070710_10144278 | 3300005437 | Bacteria | 1463 |
| 11 | Ga0070711_100038420 | 3300005439 | Bacteria | 3219 |
| 12 | Ga0070711_100083855 | 3300005439 | Bacteria | 2278 |
| 13 | Ga0070711_100085929 | 3300005439 | Bacteria | 2254 |
| 14 | Ga0070711_100215541 | 3300005439 | Bacteria | 1489 |
| 15 | Ga0070698_100042284 | 3300005471 | Bacteria | 4673 |
| 16 | Ga0070699_100067606 | 3300005518 | Bacteria | 3103 |
| 17 | Ga0070697_100063340 | 3300005536 | Bacteria | 3019 |
| 18 | Ga0081455_10008692 | 3300005937 | Bacteria | 10519 |
| 19 | Ga0070712_100050406 | 3300006175 | Bacteria | 2896 |
| 20 | Ga0070712_100054440 | 3300006175 | Bacteria | 2797 |
| 21 | Ga0070712_100229544 | 3300006175 | Bacteria | 1473 |
| 22 | Ga0075362_10055425 | 3300006177 | Bacteria | 1783 |
| 23 | Ga0079104_1026451 | 3300006946 | Bacteria | 1498 |
| 24 | Ga0099826_10002658 | 3300006948 | Bacteria | 11666 |
| 25 | Ga0099795_10006965 | 3300007788 | Bacteria | 3122 |
| 26 | Ga0105251_10041725 | 3300009011 | Bacteria | 2232 |
| 27 | Ga0105250_10066048 | 3300009092 | Bacteria | 1458 |
| 28 | Ga0105243_10015573 | 3300009148 | Bacteria | 5747 |
| 29 | Ga0105237_10000038 | 3300009545 | Bacteria | 190707 |
| 30 | Ga0123340_1000645 | 3300009763 | Bacteria | 24881 |
| 31 | Ga0123340_1017291 | 3300009763 | Bacteria | 5994 |
| 32 | Ga0123341_1007019 | 3300009765 | Bacteria | 10238 |
| 33 | Ga0123341_1007108 | 3300009765 | Bacteria | 10186 |
| 34 | Ga0157373_10003941 | 3300013100 | Bacteria | 11210 |
| 35 | Ga0157371_10000005 | 3300013102 | Bacteria | 416456 |
| 36 | Ga0157370_10000437 | 3300013104 | Bacteria | 52016 |
| 37 | Ga0157370_10060775 | 3300013104 | Bacteria | 3586 |
| 38 | Ga0157369_10171543 | 3300013105 | Bacteria | 2285 |
| 39 | Ga0157379_10227929 | 3300014968 | Bacteria | 1689 |
| 40 | Ga0183365_10001 | 3300015684 | Bacteria | 2090444 |
| 41 | Ga0228711_1005586 | 3300022739 | Bacteria | 19110 |
| 42 | Ga0228711_1023220 | 3300022739 | Bacteria | 4671 |
| 43 | Ga0228710_1000227 | 3300022740 | Bacteria | 59028 |
| 44 | Ga0209129_1000749 | 3300025258 | Bacteria | 20665 |
| 45 | Ga0209673_1002639 | 3300025273 | Bacteria | 12026 |
| 46 | Ga0209025_1003598 | 3300025294 | Bacteria | 14450 |
| 47 | Ga0209025_1009836 | 3300025294 | Bacteria | 6590 |
| 48 | Ga0209564_1003190 | 3300025295 | Bacteria | 11515 |
| 49 | Ga0209256_1005995 | 3300025299 | Bacteria | 6667 |
| 50 | Ga0207426_1002651 | 3300025302 | Bacteria | 11015 |
| 51 | Ga0207692_10008415 | 3300025898 | Bacteria | 4267 |
| 52 | Ga0207699_10028094 | 3300025906 | Bacteria | 3122 |
| 53 | Ga0207693_10006520 | 3300025915 | Bacteria | 9660 |
| 54 | Ga0207693_10018153 | 3300025915 | Bacteria | 5605 |
| 55 | Ga0207693_10030038 | 3300025915 | Bacteria | 4290 |
| 56 | Ga0207693_10032131 | 3300025915 | Bacteria | 4144 |
| 57 | Ga0207693_10227860 | 3300025915 | Bacteria | 1463 |
| 58 | Ga0207663_10118632 | 3300025916 | Bacteria | 1807 |
| 59 | Ga0207663_10183227 | 3300025916 | Bacteria | 1497 |
| 60 | Ga0207700_10228297 | 3300025928 | Bacteria | 1581 |
| 61 | Ga0207700_10228730 | 3300025928 | Bacteria | 1580 |
| 62 | Ga0207664_10099814 | 3300025929 | Bacteria | 2396 |
| 63 | Ga0207664_10221213 | 3300025929 | Bacteria | 1642 |
| 64 | Ga0207678_10206661 | 3300026067 | Bacteria | 1679 |
| 65 | Ga0209281_1000348 | 3300027111 | Bacteria | 76877 |
| 66 | Ga0209282_1000070 | 3300027666 | Bacteria | 85274 |
| 67 | Ga0209282_1001084 | 3300027666 | Bacteria | 14423 |
| 68 | Ga0307515_10006371 | 3300028794 | Bacteria | 23627 |
| 69 | Ga0265328_10045103 | 3300031239 | Bacteria | 1621 |
| 70 | Ga0265331_10035196 | 3300031250 | Bacteria | 2465 |
| 71 | Ga0316577_10147114 | 3300031733 | Bacteria | 1328 |
| 72 | Ga0315914_1000082 | 3300031967 | Bacteria | 78317 |
| 73 | Ga0316580_10004884 | 3300032139 | Bacteria | 3897 |
| 74 | Ga0307510_10250587 | 3300033180 | Bacteria | 1259 |
| 75 | Ga0315913_1000028 | 3300033430 | Bacteria | 78319 |
| 76 | Ga0315915_1000004 | 3300033464 | Bacteria | 403083 |
| 77 | Ga0373926_0072959 | 3300035083 | Bacteria | 1263 |
| 78 | Ga0373934_0010511 | 3300035086 | Bacteria | 3475 |
| 79 | Ga0373953_0009891 | 3300035117 | Bacteria | 3302 |
| 80 | Ga0373954_0033795 | 3300035118 | Bacteria | 2366 |
| 81 | Ga0373955_0041369 | 3300035172 | Bacteria | 2470 |
| 82 | Ga0316574_0243477 | 3300035398 | Bacteria | 1149 |
| 83 | Ga0373933_0020769 | 3300035724 | Bacteria | 3723 |
| 84 | Ga0373937_0008100 | 3300036401 | Bacteria | 9123 |
| 85 | Ga0373937_0020233 | 3300036401 | Bacteria | 5965 |
| 86 | Ga0373937_0269008 | 3300036401 | Bacteria | 1608 |
| 87 | Ga0316584_0006173 | 3300036712 | Bacteria | 8103 |
| 88 | Ga0395898_0045427 | 3300037466 | Bacteria | 4318 |
| 89 | Ga0395901_0232892 | 3300038443 | Bacteria | 1923 |
| 90 | Ga0436365_0709853 | 3300039437 | Bacteria | 1722 |
| 91 | Ga0436365_1385295 | 3300039437 | Bacteria | 2080 |
| 92 | Ga0436360_0066575 | 3300039438 | Bacteria | 2203 |
| 93 | Ga0436360_0356576 | 3300039438 | Bacteria | 2633 |
| 94 | Ga0436360_1189278 | 3300039438 | Bacteria | 1951 |
| 95 | Ga0436361_0529545 | 3300039447 | Bacteria | 1225 |
| 96 | Ga0436363_0105120 | 3300039450 | Bacteria | 1325 |
| 97 | Ga0436363_0352028 | 3300039450 | Bacteria | 1755 |
| 98 | Ga0436363_1404084 | 3300039450 | Bacteria | 2386 |
| 99 | Ga0436363_1617257 | 3300039450 | Bacteria | 2048 |
| 100 | Ga0436362_0417919 | 3300039453 | Bacteria | 5512 |
| 101 | Ga0436362_0505934 | 3300039453 | Bacteria | 3392 |
| 102 | Ga0436362_0838889 | 3300039453 | Bacteria | 4871 |
| 103 | Ga0436362_1145328 | 3300039453 | Bacteria | 1617 |
| 104 | Ga0451855_0004423 | 3300041511 | Bacteria | 3798 |
| 105 | Ga0466961_0045737 | 3300044693 | Bacteria | 2800 |
| 106 | Ga0466959_0109232 | 3300045049 | Bacteria | 1975 |
| 107 | Ga0495627_000635 | 3300046453 | Bacteria | 27724 |
| 108 | Ga0495580_0060956 | 3300046472 | Bacteria | 2650 |
| 109 | Ga0495610_0000016 | 3300046512 | Bacteria | 373959 |
| 110 | Ga0495630_0131496 | 3300046517 | Bacteria | 1901 |
| 111 | Ga0495643_0014551 | 3300046522 | Bacteria | 4678 |
| 112 | Ga0495640_0096976 | 3300046533 | Bacteria | 1939 |
| 113 | Ga0495633_0008923 | 3300046558 | Bacteria | 5590 |
| 114 | Ga0495668_0019681 | 3300046616 | Bacteria | 3888 |
| 115 | Ga0495625_0000104 | 3300046660 | Bacteria | 133234 |
| 116 | Ga0495661_0000067 | 3300046665 | Bacteria | 127016 |
| 117 | Ga0495613_0105232 | 3300046689 | Bacteria | 2037 |
| 118 | Ga0495670_0073348 | 3300046691 | Bacteria | 1735 |
| 119 | Ga0495671_0000581 | 3300046692 | Bacteria | 27119 |
| 120 | Ga0495660_0000898 | 3300046810 | Bacteria | 22010 |
| 121 | Ga0495686_0000369 | 3300047472 | Bacteria | 73073 |
| 122 | Ga0495686_0000942 | 3300047472 | Bacteria | 36152 |
| 123 | Ga0496103_0060814 | 3300048906 | Bacteria | 2348 |
| 124 | Ga0496104_0046360 | 3300048907 | Bacteria | 4093 |
| 125 | Ga0496105_0000389 | 3300048908 | Bacteria | 28863 |
| 126 | Ga0496106_0008221 | 3300048909 | Bacteria | 7714 |
| 127 | Ga0496106_0013878 | 3300048909 | Bacteria | 5954 |
| 128 | Ga0496107_0130789 | 3300048910 | Bacteria | 1853 |
| 129 | Ga0496110_0178053 | 3300048913 | Bacteria | 1930 |
| 130 | Ga0496111_0129046 | 3300048914 | Bacteria | 1870 |
| 131 | Ga0496116_0000049 | 3300048919 | Bacteria | 314452 |
| 132 | Ga0496116_0003190 | 3300048919 | Bacteria | 16402 |
| 133 | Ga0496116_0004310 | 3300048919 | Bacteria | 13614 |
| 134 | Ga0496116_0073456 | 3300048919 | Bacteria | 2156 |
| 135 | Ga0496117_0000083 | 3300048920 | Bacteria | 218945 |
| 136 | Ga0496117_0000085 | 3300048920 | Bacteria | 213887 |
| 137 | Ga0496117_0001492 | 3300048920 | Bacteria | 33537 |
| 138 | Ga0496118_0002150 | 3300048921 | Bacteria | 27498 |
| 139 | Ga0496118_0002195 | 3300048921 | Bacteria | 27123 |
| 140 | Ga0496118_0004658 | 3300048921 | Bacteria | 16090 |
| 141 | Ga0496118_0005403 | 3300048921 | Bacteria | 14538 |
| 142 | Ga0496118_0029585 | 3300048921 | Bacteria | 4590 |
| 143 | Ga0496119_0002755 | 3300048922 | Bacteria | 18904 |
| 144 | Ga0496119_0008680 | 3300048922 | Bacteria | 8886 |
| 145 | Ga0496119_0036474 | 3300048922 | Bacteria | 3208 |
| 146 | Ga0496120_0000030 | 3300048923 | Bacteria | 226066 |
| 147 | Ga0496120_0001909 | 3300048923 | Bacteria | 23063 |
| 148 | Ga0496120_0033610 | 3300048923 | Bacteria | 3080 |
| 149 | Ga0496121_0000936 | 3300048924 | Bacteria | 52789 |
| 150 | Ga0496122_0000050 | 3300048925 | Bacteria | 267874 |
| 151 | Ga0496122_0008122 | 3300048925 | Bacteria | 11433 |
| 152 | Ga0496122_0026511 | 3300048925 | Bacteria | 4992 |
| 153 | Ga0496123_0000052 | 3300048926 | Bacteria | 236409 |
| 154 | Ga0496124_0001127 | 3300048927 | Bacteria | 42030 |
| 155 | Ga0496124_0002483 | 3300048927 | Bacteria | 24047 |
| 156 | Ga0496124_0002595 | 3300048927 | Bacteria | 23383 |
| 157 | Ga0496124_0007622 | 3300048927 | Bacteria | 11469 |
| 158 | Ga0496124_0014702 | 3300048927 | Bacteria | 7555 |
| 159 | Ga0496124_0054248 | 3300048927 | Bacteria | 3393 |
| 160 | Ga0496125_0030719 | 3300048928 | Bacteria | 4800 |
| 161 | Ga0496126_0000081 | 3300048929 | Bacteria | 218818 |
| 162 | Ga0496126_0008722 | 3300048929 | Bacteria | 10888 |
| 163 | Ga0496126_0009350 | 3300048929 | Bacteria | 10425 |
| 164 | Ga0496126_0177125 | 3300048929 | Bacteria | 1813 |
| 165 | Ga0501032_0000085 | 3300049569 | Bacteria | 81962 |
| 166 | Ga0501033_0015730 | 3300049570 | Bacteria | 5737 |
| 167 | Ga0501033_0158053 | 3300049570 | Bacteria | 1633 |
| 168 | Ga0501034_0000848 | 3300049571 | Bacteria | 45276 |
| 169 | Ga0501034_0012088 | 3300049571 | Bacteria | 8925 |
| 170 | Ga0501034_0055300 | 3300049571 | Bacteria | 3994 |
| 171 | Ga0501034_0414646 | 3300049571 | Bacteria | 1268 |
| 172 | Ga0501036_0221716 | 3300049572 | Bacteria | 1588 |
| 173 | Ga0501037_0000043 | 3300049573 | Bacteria | 118391 |
| 174 | Ga0501038_0000075 | 3300049574 | Bacteria | 81953 |
| 175 | Ga0501038_0230370 | 3300049574 | Bacteria | 1475 |
| 176 | Ga0501043_0000169 | 3300049579 | Bacteria | 58853 |
| 177 | Ga0501035_0141775 | 3300049822 | Bacteria | 2089 |
| 178 | nmdc:mga00v17_34_c1 | 3300050491 | Bacteria | 85919 |
| 179 | nmdc:mga0yw44_13964_c1 | 3300050492 | Bacteria | 4248 |
| 180 | nmdc:mga0k408_58489_c1 | 3300050493 | Bacteria | 2239 |
| 181 | nmdc:mga0n895_224580_c1 | 3300050512 | Bacteria | 1906 |
| 182 | Ga0495601_0088943 | 3300053077 | Bacteria | 1986 |
| 183 | Ga0495601_0136157 | 3300053077 | Bacteria | 1601 |
| 184 | Ga0495595_0048091 | 3300053084 | Bacteria | 1969 |
| 185 | Ga0495619_0023861 | 3300053085 | Bacteria | 3921 |
| 186 | Ga0495619_0186986 | 3300053085 | Bacteria | 1434 |
| 187 | Ga0500560_000307 | 3300053107 | Bacteria | 6249 |
| 188 | Ga0500572_003449 | 3300053111 | Bacteria | 3615 |
| 189 | Ga0500618_000019 | 3300053125 | Bacteria | 161916 |
| 190 | Ga0500561_0000065 | 3300053137 | Bacteria | 21109 |
| 191 | Ga0500568_0000564 | 3300053139 | Bacteria | 27242 |
| 192 | Ga0500624_009253 | 3300053157 | Bacteria | 1397 |
| 193 | Ga0500627_0000758 | 3300053158 | Bacteria | 8579 |
| 194 | Ga0500634_0000771 | 3300053161 | Bacteria | 11154 |
| 195 | 2511388187 | 2511231027 | Bacteria | 5013807 |
| 196 | 2513605116 | 2513237089 | Bacteria | 6553624 |
| 197 | 2513987574 | 2513237156 | Bacteria | 6402557 |
| 198 | 2514037598 | 2513237164 | Bacteria | 7563725 |
| 199 | 2530644665 | 2529292951 | Bacteria | 6916614 |
| 200 | 2585283808 | 2582581308 | Bacteria | 7413247 |
| 201 | 2585393571 | 2582581866 | Bacteria | 6859583 |
| 202 | 2601612367 | 2600255279 | Bacteria | 5605316 |
| 203 | 2643854568 | 2643221568 | Bacteria | 5187270 |
| 204 | 2644492952 | 2643221688 | Bacteria | 5260751 |
| 205 | 2657685980 | 2657244999 | Bacteria | 5946535 |
| 206 | 2793370622 | 2791355267 | Bacteria | 7222458 |
| 207 | 2802721062 | 2802428858 | Bacteria | 6636079 |
| 208 | 2802728151 | 2802428859 | Bacteria | 6667919 |
| 209 | 2802733617 | 2802428860 | Bacteria | 6525526 |
| 210 | 2802736640 | 2802428861 | Bacteria | 6534206 |
| 211 | 2802746707 | 2802428862 | Bacteria | 6633353 |
| 212 | 2802749795 | 2802428863 | Bacteria | 6410669 |
| 213 | 2804755313 | 2802429268 | Bacteria | 6094027 |
| 214 | 2842779849 | 2842775625 | Bacteria | 5587290 |
| 215 | 2856365463 | 2856364286 | Bacteria | 6939991 |
| 216 | 2869286938 | 2869285874 | Bacteria | 6901219 |
| 217 | 2871434244 | 2871429161 | Bacteria | 6547891 |
| 218 | 2871455450 | 2871451962 | Bacteria | 7336357 |
| 219 | 2874147379 | 2874146452 | Bacteria | 7533118 |
| 220 | 2874156385 | 2874155637 | Bacteria | 6724144 |
| 221 | 2874173280 | 2874168670 | Bacteria | 8062617 |
| 222 | 2876414573 | 2876413966 | Bacteria | 6831344 |
| 223 | 2878747119 | 2878745973 | Bacteria | 6867388 |
| 224 | 2894817780 | 2894817345 | Bacteria | 4892941 |
| 225 | 2903500136 | 2903492973 | Bacteria | 13473544 |
| 226 | 2906309291 | 2906308376 | Bacteria | 6841989 |
| 227 | 2906326941 | 2906321335 | Bacteria | 6579571 |
| 228 | 2915986740 | 2915980308 | Bacteria | 6624279 |
| 229 | 2916064136 | 2916061851 | Bacteria | 6737736 |
| 230 | 2919168905 | 2919166419 | Bacteria | 4952238 |
| 231 | 2921254054 | 2921250672 | Bacteria | 6677771 |
| 232 | 2924734210 | 2924733363 | Bacteria | 7574837 |
| 233 | 2933598606 | 2933594066 | Bacteria | 5594265 |
| 234 | 2937035464 | 2937029754 | Bacteria | 6424026 |
| 235 | 2937078970 | 2937078374 | Bacteria | 6610289 |
| 236 | 2937087504 | 2937084907 | Bacteria | 6618516 |
| 237 | 2937813651 | 2937813078 | Bacteria | 7783518 |
| 238 | 2937972619 | 2937972304 | Bacteria | 7532020 |
| 239 | 2957376305 | 2957375807 | Bacteria | 6425588 |
| 240 | 2957440479 | 2957437181 | Bacteria | 6568994 |
| 241 | 2958105625 | 2958100919 | Bacteria | 6800575 |
| 242 | 2958131338 | 2958130278 | Bacteria | 6897202 |
| 243 | 2958144973 | 2958144490 | Bacteria | 6677056 |
| 244 | 2958173067 | 2958172287 | Bacteria | 6716688 |
| 245 | 2958181163 | 2958179912 | Bacteria | 6874908 |
| 246 | 2960597398 | 2960591022 | Bacteria | 6622873 |
| 247 | 2960636591 | 2960631154 | Bacteria | 6732508 |
| 248 | 2960686101 | 2960680706 | Bacteria | 6624464 |
| 249 | 2960695790 | 2960693952 | Bacteria | 6749742 |
| 250 | 2961079001 | 2961077736 | Bacteria | 7079850 |
| 251 | 2961116046 | 2961114664 | Bacteria | 6680456 |
| 252 | 2967690959 | 2967686174 | Bacteria | 6678622 |
| 253 | 2968112031 | 2968110612 | Bacteria | 6814636 |
| 254 | 2970148049 | 2970143518 | Bacteria | 6446480 |
| 255 | 2970532156 | 2970524798 | Bacteria | 6840927 |
| 256 | 2977533404 | 2977530762 | Bacteria | 6951399 |
| 257 | 2977548840 | 2977544691 | Bacteria | 6875412 |
| 258 | 2977843957 | 2977843712 | Bacteria | 6753583 |
| 259 | 2977946207 | 2977942078 | Bacteria | 7570577 |
| 260 | 2979715353 | 2979710463 | Bacteria | 6785254 |
| 261 | 2987645184 | 2987636660 | Bacteria | 8088555 |
| 262 | 2989350606 | 2989349275 | Bacteria | 6349068 |
| 263 | 3004206579 | 3004203850 | Bacteria | 7307914 |
| 264 | 8002062520 | 8002060224 | Bacteria | 4026565 |
| 265 | 8004005267 | 8003999396 | Bacteria | 7063185 |
| 266 | 8004388981 | 8004387939 | Bacteria | 7049250 |
| 267 | 8004715550 | 8004714634 | Bacteria | 6776161 |
| 268 | Ga0099795_10035861 | |||
| 269 | JGI25152J39213_1010966 | |||
| 270 | JGI25160J50197_1006752 | |||
| 271 | Ga0055528_1011061 | |||
| 272 | Ga0070668_100168046 | |||
| 273 | Ga0070714_100328090 | |||
| 274 | Ga0070713_100085485 | |||
| 275 | Ga0070710_10037261 | |||
| 276 | Ga0070710_10120003 | |||
| 277 | Ga0070710_10144278 | |||
| 278 | Ga0070711_100038420 | |||
| 279 | Ga0070711_100083855 | |||
| 280 | Ga0070711_100085929 | |||
| 281 | Ga0070711_100215541 | |||
| 282 | Ga0070698_100042284 | |||
| 283 | Ga0070699_100067606 | |||
| 284 | Ga0070697_100063340 | |||
| 285 | Ga0081455_10008692 | |||
| 286 | Ga0070712_100050406 | |||
| 287 | Ga0070712_100054440 | |||
| 288 | Ga0070712_100229544 | |||
| 289 | Ga0075362_10055425 | |||
| 290 | Ga0079104_1026451 | |||
| 291 | Ga0099826_10002658 | |||
| 292 | Ga0099795_10006965 | |||
| 293 | Ga0105251_10041725 | |||
| 294 | Ga0105250_10066048 | |||
| 295 | Ga0105243_10015573 | |||
| 296 | Ga0105237_10000038 | |||
| 297 | Ga0123340_1000645 | |||
| 298 | Ga0123340_1017291 | |||
| 299 | Ga0123341_1007019 | |||
| 300 | Ga0123341_1007108 | |||
| 301 | Ga0157373_10003941 | |||
| 302 | Ga0157371_10000005 | |||
| 303 | Ga0157370_10000437 | |||
| 304 | Ga0157370_10060775 | |||
| 305 | Ga0157369_10171543 | |||
| 306 | Ga0157379_10227929 | |||
| 307 | Ga0183365_10001 | |||
| 308 | Ga0228711_1005586 | |||
| 309 | Ga0228711_1023220 | |||
| 310 | Ga0228710_1000227 | |||
| 311 | Ga0209129_1000749 | |||
| 312 | Ga0209673_1002639 | |||
| 313 | Ga0209025_1003598 | |||
| 314 | Ga0209025_1009836 | |||
| 315 | Ga0209564_1003190 | |||
| 316 | Ga0209256_1005995 | |||
| 317 | Ga0207426_1002651 | |||
| 318 | Ga0207692_10008415 | |||
| 319 | Ga0207699_10028094 | |||
| 320 | Ga0207693_10006520 | |||
| 321 | Ga0207693_10018153 | |||
| 322 | Ga0207693_10030038 | |||
| 323 | Ga0207693_10032131 | |||
| 324 | Ga0207693_10227860 | |||
| 325 | Ga0207663_10118632 | |||
| 326 | Ga0207663_10183227 | |||
| 327 | Ga0207700_10228297 | |||
| 328 | Ga0207700_10228730 | |||
| 329 | Ga0207664_10099814 | |||
| 330 | Ga0207664_10221213 | |||
| 331 | Ga0207678_10206661 | |||
| 332 | Ga0209281_1000348 | |||
| 333 | Ga0209282_1000070 | |||
| 334 | Ga0209282_1001084 | |||
| 335 | Ga0307515_10006371 | |||
| 336 | Ga0265328_10045103 | |||
| 337 | Ga0265331_10035196 | |||
| 338 | Ga0316577_10147114 | |||
| 339 | Ga0315914_1000082 | |||
| 340 | Ga0316580_10004884 | |||
| 341 | Ga0307510_10250587 | |||
| 342 | Ga0315913_1000028 | |||
| 343 | Ga0315915_1000004 | |||
| 344 | Ga0373926_0072959 | |||
| 345 | Ga0373934_0010511 | |||
| 346 | Ga0373953_0009891 | |||
| 347 | Ga0373954_0033795 | |||
| 348 | Ga0373955_0041369 | |||
| 349 | Ga0316574_0243477 | |||
| 350 | Ga0373933_0020769 | |||
| 351 | Ga0373937_0008100 | |||
| 352 | Ga0373937_0020233 | |||
| 353 | Ga0373937_0269008 | |||
| 354 | Ga0316584_0006173 | |||
| 355 | Ga0395898_0045427 | |||
| 356 | Ga0395901_0232892 | |||
| 357 | Ga0436365_0709853 | |||
| 358 | Ga0436365_1385295 | |||
| 359 | Ga0436360_0066575 | |||
| 360 | Ga0436360_0356576 | |||
| 361 | Ga0436360_1189278 | |||
| 362 | Ga0436361_0529545 | |||
| 363 | Ga0436363_0105120 | |||
| 364 | Ga0436363_0352028 | |||
| 365 | Ga0436363_1404084 | |||
| 366 | Ga0436363_1617257 | |||
| 367 | Ga0436362_0417919 | |||
| 368 | Ga0436362_0505934 | |||
| 369 | Ga0436362_0838889 | |||
| 370 | Ga0436362_1145328 | |||
| 371 | Ga0451855_0004423 | |||
| 372 | Ga0466961_0045737 | |||
| 373 | Ga0466959_0109232 | |||
| 374 | Ga0495627_000635 | |||
| 375 | Ga0495580_0060956 | |||
| 376 | Ga0495610_0000016 | |||
| 377 | Ga0495630_0131496 | |||
| 378 | Ga0495643_0014551 | |||
| 379 | Ga0495640_0096976 | |||
| 380 | Ga0495633_0008923 | |||
| 381 | Ga0495668_0019681 | |||
| 382 | Ga0495625_0000104 | |||
| 383 | Ga0495661_0000067 | |||
| 384 | Ga0495613_0105232 | |||
| 385 | Ga0495670_0073348 | |||
| 386 | Ga0495671_0000581 | |||
| 387 | Ga0495660_0000898 | |||
| 388 | Ga0495686_0000369 | |||
| 389 | Ga0495686_0000942 | |||
| 390 | Ga0496103_0060814 | |||
| 391 | Ga0496104_0046360 | |||
| 392 | Ga0496105_0000389 | |||
| 393 | Ga0496106_0008221 | |||
| 394 | Ga0496106_0013878 | |||
| 395 | Ga0496107_0130789 | |||
| 396 | Ga0496110_0178053 | |||
| 397 | Ga0496111_0129046 | |||
| 398 | Ga0496116_0000049 | |||
| 399 | Ga0496116_0003190 | |||
| 400 | Ga0496116_0004310 | |||
| 401 | Ga0496116_0073456 | |||
| 402 | Ga0496117_0000083 | |||
| 403 | Ga0496117_0000085 | |||
| 404 | Ga0496117_0001492 | |||
| 405 | Ga0496118_0002150 | |||
| 406 | Ga0496118_0002195 | |||
| 407 | Ga0496118_0004658 | |||
| 408 | Ga0496118_0005403 | |||
| 409 | Ga0496118_0029585 | |||
| 410 | Ga0496119_0002755 | |||
| 411 | Ga0496119_0008680 | |||
| 412 | Ga0496119_0036474 | |||
| 413 | Ga0496120_0000030 | |||
| 414 | Ga0496120_0001909 | |||
| 415 | Ga0496120_0033610 | |||
| 416 | Ga0496121_0000936 | |||
| 417 | Ga0496122_0000050 | |||
| 418 | Ga0496122_0008122 | |||
| 419 | Ga0496122_0026511 | |||
| 420 | Ga0496123_0000052 | |||
| 421 | Ga0496124_0001127 | |||
| 422 | Ga0496124_0002483 | |||
| 423 | Ga0496124_0002595 | |||
| 424 | Ga0496124_0007622 | |||
| 425 | Ga0496124_0014702 | |||
| 426 | Ga0496124_0054248 | |||
| 427 | Ga0496125_0030719 | |||
| 428 | Ga0496126_0000081 | |||
| 429 | Ga0496126_0008722 | |||
| 430 | Ga0496126_0009350 | |||
| 431 | Ga0496126_0177125 | |||
| 432 | Ga0501032_0000085 | |||
| 433 | Ga0501033_0015730 | |||
| 434 | Ga0501033_0158053 | |||
| 435 | Ga0501034_0000848 | |||
| 436 | Ga0501034_0012088 | |||
| 437 | Ga0501034_0055300 | |||
| 438 | Ga0501034_0414646 | |||
| 439 | Ga0501036_0221716 | |||
| 440 | Ga0501037_0000043 | |||
| 441 | Ga0501038_0000075 | |||
| 442 | Ga0501038_0230370 | |||
| 443 | Ga0501043_0000169 | |||
| 444 | Ga0501035_0141775 | |||
| 445 | nmdc:mga00v17_34_c1 | |||
| 446 | nmdc:mga0yw44_13964_c1 | |||
| 447 | nmdc:mga0k408_58489_c1 | |||
| 448 | nmdc:mga0n895_224580_c1 | |||
| 449 | Ga0495601_0088943 | |||
| 450 | Ga0495601_0136157 | |||
| 451 | Ga0495595_0048091 | |||
| 452 | Ga0495619_0023861 | |||
| 453 | Ga0495619_0186986 | |||
| 454 | Ga0500560_000307 | |||
| 455 | Ga0500572_003449 | |||
| 456 | Ga0500618_000019 | |||
| 457 | Ga0500561_0000065 | |||
| 458 | Ga0500568_0000564 | |||
| 459 | Ga0500624_009253 | |||
| 460 | Ga0500627_0000758 | |||
| 461 | Ga0500634_0000771 | |||
| 462 | 2511388187 | |||
| 463 | 2513605116 | |||
| 464 | 2513987574 | |||
| 465 | 2514037598 | |||
| 466 | 2530644665 | |||
| 467 | 2585283808 | |||
| 468 | 2585393571 | |||
| 469 | 2601612367 | |||
| 470 | 2643854568 | |||
| 471 | 2644492952 | |||
| 472 | 2657685980 | |||
| 473 | 2793370622 | |||
| 474 | 2802721062 | |||
| 475 | 2802728151 | |||
| 476 | 2802733617 | |||
| 477 | 2802736640 | |||
| 478 | 2802746707 | |||
| 479 | 2802749795 | |||
| 480 | 2804755313 | |||
| 481 | 2842779849 | |||
| 482 | 2856365463 | |||
| 483 | 2869286938 | |||
| 484 | 2871434244 | |||
| 485 | 2871455450 | |||
| 486 | 2874147379 | |||
| 487 | 2874156385 | |||
| 488 | 2874173280 | |||
| 489 | 2876414573 | |||
| 490 | 2878747119 | |||
| 491 | 2894817780 | |||
| 492 | 2903500136 | |||
| 493 | 2906309291 | |||
| 494 | 2906326941 | |||
| 495 | 2915986740 | |||
| 496 | 2916064136 | |||
| 497 | 2919168905 | |||
| 498 | 2921254054 | |||
| 499 | 2924734210 | |||
| 500 | 2933598606 | |||
| 501 | 2937035464 | |||
| 502 | 2937078970 | |||
| 503 | 2937087504 | |||
| 504 | 2937813651 | |||
| 505 | 2937972619 | |||
| 506 | 2957376305 | |||
| 507 | 2957440479 | |||
| 508 | 2958105625 | |||
| 509 | 2958131338 | |||
| 510 | 2958144973 | |||
| 511 | 2958173067 | |||
| 512 | 2958181163 | |||
| 513 | 2960597398 | |||
| 514 | 2960636591 | |||
| 515 | 2960686101 | |||
| 516 | 2960695790 | |||
| 517 | 2961079001 | |||
| 518 | 2961116046 | |||
| 519 | 2967690959 | |||
| 520 | 2968112031 | |||
| 521 | 2970148049 | |||
| 522 | 2970532156 | |||
| 523 | 2977533404 | |||
| 524 | 2977548840 | |||
| 525 | 2977843957 | |||
| 526 | 2977946207 | |||
| 527 | 2979715353 | |||
| 528 | 2987645184 | |||
| 529 | 2989350606 | |||
| 530 | 3004206579 | |||
| 531 | 8002062520 | |||
| 532 | 8004005267 | |||
| 533 | 8004388981 | |||
| 534 | 8004715550 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 2va8-assembly1.cif.gz_A | dna repair helicase hel308 | 0.8354 | 154 | 203 |
| 4f4x-assembly1.cif.gz_A | y-family dna polymerase chimera dbh-dpo4-dpo4 #2 | 0.8031 | 1 | 318 |
| 6hix-assembly1.cif.gz_BS | cryo-em structure of the trypanosoma brucei mitochondrial ribosome - this entry contains the large mitoribosomal subunit | 0.7972 | 150 | 206 |
| 2w7o-assembly1.cif.gz_B | structure and activity of bypass synthesis by human dna polymerase kappa opposite the 7,8-dihydro-8-oxodeoxyguanosine adduct | 0.7965 | 1 | 319 |
| 2w7o-assembly2.cif.gz_A | structure and activity of bypass synthesis by human dna polymerase kappa opposite the 7,8-dihydro-8-oxodeoxyguanosine adduct | 0.7953 | 1 | 318 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q9UBZ9_643_696_1.10.150.20 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain | 0.99 | 152 | 204 | 1.10.150.20 |
| 3gqcC03 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain | 0.988 | 152 | 204 | 1.10.150.20 |
| 3gqcD03 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain | 0.9869 | 152 | 204 | 1.10.150.20 |
| af_O74944_370_477_3.30.1490.100 | Alpha Beta;2-Layer Sandwich;Dna Ligase; domain 1;DNA polymerase, Y-family, little finger domain | 0.9718 | 217 | 319 | 3.30.1490.100 |
| 5yuvF03 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain | 0.964 | 152 | 206 | 1.10.150.20 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7S3YG38-F1-model_v4 | DNA polymerase Y-family little finger domain-containing protein | 0.9652 | 220 | 318 |
GO:0003684
GO:0003887 GO:0005634 GO:0042276 |
| AF-A0A529HPU4-F1-model_v4 | deleted | 0.9558 | 229 | 319 |
|
| AF-R7A6X8-F1-model_v4 | DNA polymerase IV 3 | 0.9535 | 216 | 322 |
GO:0003684
GO:0003887 GO:0005829 GO:0009432 GO:0042276 |
| AF-A0A7V5PMB2-F1-model_v4 | DNA polymerase Y-family little finger domain-containing protein | 0.9516 | 249 | 319 |
GO:0003684
GO:0006281 |
| AF-A3WZ00-F1-model_v4 | DNA-directed DNA polymerase (EC 2.7.7.7) | 0.9501 | 214 | 319 |
GO:0003684
GO:0003887 GO:0005829 GO:0009432 GO:0042276 |