F375392

General Info

Members Datasets Scaffolds Average Seq Length
268 194 536 363

Family's Representative Sequence

Representative Sequence 3300006051|Ga0075364_10047391|Ga0075364_100473912
Length 378
Sequence MSSTSRLTEKPYPNWSEYALTLAQNSLCVSNPNPRVGCVIIGADGEILGQGFTQQAGGPHAEIKALQDAREHGRDPQGATAYVTLEPCSHYGRTGPCCDALIEAGIIRVVSAVSDPNPLVAGRGFERLRAAGIRVEVGPGATESRDLNIGFFSRLIRGTPWVRLKAATSIDGVTALENGASQWITSSEARTDGHAWRARACAVLTGIGTVLQDDPRLDARDVTTPRQPHLVIVDSQLQTPLDAQLFRVPQRQVLIYTASEDESKMMALRSAGAHVICLPTAKGKVNLAAMLRDLAQQRSVNELHVEAGAKLNGSLIREGLVDEFLVYMAPTLLGSGRGIAQWGPLESLAGALKLEFRSVDQVGPDIRLLARVAGRDEF

Samples

Sample ID Description Type Environment
1 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
4 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
5 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
6 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
7 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
8 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
9 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
12 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
13 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
14 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
15 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
16 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
17 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
18 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
19 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
20 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
21 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
22 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
23 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
24 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
25 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
26 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
27 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
28 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
29 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
30 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
31 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
32 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
35 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
36 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
37 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
38 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
39 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
40 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
41 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
42 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
43 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
44 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
45 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
48 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
49 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
50 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
51 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
52 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
55 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
56 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
57 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
59 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
60 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
63 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
66 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
68 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
70 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
71 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
89 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
90 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
91 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
92 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
93 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
94 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
95 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
96 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
97 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
98 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
99 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
100 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
101 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
102 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
103 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
104 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
105 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
106 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
107 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
108 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
109 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
110 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
111 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
112 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
113 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
114 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
115 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
116 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
117 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
118 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
119 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
120 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
121 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
122 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
123 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
124 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
125 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
126 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
127 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
128 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
129 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
130 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
131 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
132 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
133 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
134 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
135 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
136 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
137 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
138 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
139 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
140 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
141 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
142 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
143 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
144 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
145 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
146 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
147 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
148 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
149 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
150 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
151 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
152 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
153 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
154 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
155 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
156 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
157 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
158 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
159 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
160 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
161 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
162 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
163 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
164 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
165 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
166 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
167 2511231002 Polaromonas sp. CF318 Isolate Rhizosphere
168 2513020051 Variovorax sp. CF313 Isolate Rhizosphere
169 2599185214 Variovorax sp. NFACC26 Isolate Rhizoplane
170 2599185226 Variovorax sp. NFACC27 Isolate Rhizoplane
171 2599185227 Variovorax sp. NFACC28 Isolate Rhizoplane
172 2599185229 Variovorax sp. NFACC29 Isolate Endosphere
173 2643221652 Acidovorax sp. Root402 Isolate Unclassified
174 2643221658 Variovorax sp. Root411 Isolate Unclassified
175 2643221672 Variovorax sp. Root434 Isolate Unclassified
176 2818991446 Variovorax sp. 1180 Isolate Unclassified
177 2831265667 Variovorax guangxiensis DSM 27352 Isolate Rhizosphere
178 2838054893 Variovorax guangxiensis 34/80 Isolate Nodule
179 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere
180 2885192300 Variovorax sp. MHTC-1 Isolate Rhizosphere
181 2899924645 Variovorax sp. 369 Isolate Unclassified
182 2904449895 Variovorax sp. 1763 Isolate Rhizosphere
183 2904456579 Variovorax sp. 2002 Isolate Unclassified
184 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
185 2928037797 Variovorax sp. 1126 Isolate Unclassified
186 2928044640 Variovorax sp. 1128 Isolate Unclassified
187 2928051484 Variovorax sp. 1133 Isolate Unclassified
188 2928064002 Variovorax sp. 1140 Isolate Rhizosphere
189 2928070936 Variovorax gossypii 1167 Isolate Unclassified
190 2928084124 Variovorax paradoxus 1218 Isolate Unclassified
191 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
192 2929520902 Variovorax beijingensis 502 Isolate Unclassified
193 2945972063 Variovorax paradoxus W2I8 Isolate Rhizosphere
194 2954767861 Variovorax sp. TBS-050B Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.18
Metatranscriptomes 0.37
Isolates 10.45

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 37.31
Nodule 0.37
Rhizoplane 2.24
Rhizosphere 44.78
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075364_10047391 3300006051 Bacteria 2799
2 JGI24739J22299_10020206 3300001989 Bacteria 2379
3 JGI25155J39150_1000008 3300002704 Bacteria 236146
4 JGI25156J39149_1000002 3300002705 Bacteria 343501
5 JGI25154J39366_1000010 3300002738 Bacteria 297985
6 JGI25157J39369_1000001 3300002741 Bacteria 363277
7 JGI25159J45721_1000336 3300002987 Bacteria 21694
8 JGI25159J45721_1000418 3300002987 Bacteria 19658
9 JGI25151J46595_10026259 3300003187 Bacteria 2354
10 JGI25151J46595_10039050 3300003187 Bacteria 1758
11 rootH2_10022420 3300003320 Bacteria 4303
12 rootH1_10021739 3300003323 Bacteria 4775
13 JGI25160J50197_1000342 3300003354 Bacteria 31433
14 JGI25160J50197_1007627 3300003354 Bacteria 4217
15 JGI25161J50226_1000259 3300003374 Bacteria 31433
16 Ga0006562J51391_1037864 3300003578 Bacteria 1380
17 Ga0055535_1000415 3300003761 Bacteria 40129
18 Ga0055542_1000004 3300003762 Bacteria 553532
19 Ga0055526_1003097 3300003771 Bacteria 10789
20 Ga0055526_1023900 3300003771 Bacteria 2021
21 Ga0055537_1000102 3300003773 Bacteria 63809
22 Ga0055524_1000093 3300003775 Bacteria 111953
23 Ga0055536_1002186 3300003781 Bacteria 11135
24 Ga0055536_1002866 3300003781 Bacteria 9497
25 Ga0055536_1013093 3300003781 Bacteria 3020
26 Ga0055528_1002404 3300003790 Bacteria 10072
27 Ga0055530_10000285 3300003791 Bacteria 46054
28 Ga0055530_10003336 3300003791 Bacteria 9236
29 Ga0055530_10011349 3300003791 Bacteria 3204
30 Ga0055540_1000196 3300003792 Bacteria 58476
31 Ga0055540_1002383 3300003792 Bacteria 10029
32 Ga0055540_1002388 3300003792 Bacteria 10001
33 Ga0055531_10001042 3300003794 Bacteria 21964
34 Ga0055531_10002290 3300003794 Bacteria 12955
35 Ga0055543_1000118 3300004625 Bacteria 66892
36 Ga0065165_1003509 3300005262 Bacteria 10898
37 Ga0065165_1004147 3300005262 Bacteria 9291
38 Ga0065165_1013362 3300005262 Bacteria 3270
39 Ga0070658_10061446 3300005327 Bacteria 3061
40 Ga0070660_100174845 3300005339 Bacteria 1736
41 Ga0070667_100011158 3300005367 Bacteria 7432
42 Ga0070711_100027929 3300005439 Bacteria 3709
43 Ga0070662_100045591 3300005457 Bacteria 3147
44 Ga0070679_100013143 3300005530 Bacteria 7926
45 Ga0068853_100012188 3300005539 Bacteria 6992
46 Ga0068855_100008990 3300005563 Bacteria 12069
47 Ga0068854_100180838 3300005578 Bacteria 1647
48 Ga0068854_100188244 3300005578 Bacteria 1616
49 Ga0068851_10078645 3300005834 Bacteria 1719
50 Ga0068858_100195210 3300005842 Bacteria 1913
51 Ga0075363_100096070 3300006048 Bacteria 1636
52 Ga0075362_10020084 3300006177 Bacteria 2788
53 Ga0075367_10022465 3300006178 Bacteria 3538
54 Ga0075366_10069087 3300006195 Bacteria 2102
55 Ga0075370_10000865 3300006353 Bacteria 12318
56 Ga0075370_10128697 3300006353 Bacteria 1477
57 Ga0075370_10164547 3300006353 Bacteria 1302
58 Ga0105244_10006858 3300009036 Bacteria 7314
59 Ga0105243_10004206 3300009148 Bacteria 11405
60 Ga0105248_10060083 3300009177 Bacteria 4268
61 Ga0157371_10097881 3300013102 Bacteria 2080
62 Ga0157369_10030026 3300013105 Bacteria 5998
63 Ga0182008_10002743 3300014497 Bacteria 10924
64 Ga0182008_10053828 3300014497 Bacteria 1992
65 Ga0157376_10140705 3300014969 Bacteria 2164
66 Ga0182006_1002804 3300015261 Bacteria 9296
67 Ga0182006_1018065 3300015261 Bacteria 2985
68 Ga0182007_10001192 3300015262 Bacteria 14135
69 Ga0209435_100001 3300025206 Bacteria 1424171
70 Ga0209672_100491 3300025228 Bacteria 22021
71 Ga0209258_100022 3300025242 Bacteria 553584
72 Ga0207425_1001474 3300025245 Bacteria 9800
73 Ga0209646_1000001 3300025246 Bacteria 3092932
74 Ga0209026_1000001 3300025250 Bacteria 1228671
75 Ga0209148_1000034 3300025254 Bacteria 553584
76 Ga0209759_1000001 3300025256 Bacteria 2799452
77 Ga0209129_1000023 3300025258 Bacteria 420646
78 Ga0209129_1006455 3300025258 Bacteria 3780
79 Ga0209565_1000161 3300025263 Bacteria 90019
80 Ga0209673_1000391 3300025273 Bacteria 78867
81 Ga0209130_1000118 3300025284 Bacteria 129005
82 Ga0209130_1000359 3300025284 Bacteria 52040
83 Ga0209130_1001438 3300025284 Bacteria 15802
84 Ga0209675_1000128 3300025291 Bacteria 103111
85 Ga0209675_1001345 3300025291 Bacteria 14507
86 Ga0209676_1000005 3300025292 Bacteria 1076001
87 Ga0209676_1000054 3300025292 Bacteria 365890
88 Ga0209676_1000437 3300025292 Bacteria 71544
89 Ga0209676_1002098 3300025292 Bacteria 15389
90 Ga0209025_1000717 3300025294 Bacteria 56308
91 Ga0209025_1001078 3300025294 Bacteria 39551
92 Ga0209025_1003092 3300025294 Bacteria 16327
93 Ga0209025_1003928 3300025294 Bacteria 13370
94 Ga0209025_1006330 3300025294 Bacteria 9231
95 Ga0209025_1008502 3300025294 Bacteria 7377
96 Ga0209564_1000610 3300025295 Bacteria 55376
97 Ga0209564_1000958 3300025295 Bacteria 36698
98 Ga0209564_1001121 3300025295 Bacteria 31519
99 Ga0209564_1003261 3300025295 Bacteria 11326
100 Ga0209758_1000064 3300025297 Bacteria 311812
101 Ga0209758_1014787 3300025297 Bacteria 4115
102 Ga0209050_1000007 3300025298 Bacteria 1187891
103 Ga0209050_1000066 3300025298 Bacteria 305458
104 Ga0209050_1000471 3300025298 Bacteria 71466
105 Ga0209050_1000723 3300025298 Bacteria 48329
106 Ga0209050_1001697 3300025298 Bacteria 22023
107 Ga0209050_1017522 3300025298 Bacteria 2848
108 Ga0209256_1000003 3300025299 Bacteria 1661127
109 Ga0209256_1000115 3300025299 Bacteria 173607
110 Ga0209256_1000895 3300025299 Bacteria 36698
111 Ga0207426_1000001 3300025302 Bacteria 1341301
112 Ga0207426_1000031 3300025302 Bacteria 460699
113 Ga0207426_1000197 3300025302 Bacteria 146366
114 Ga0207426_1000997 3300025302 Bacteria 27622
115 Ga0209051_1000009 3300025303 Bacteria 706778
116 Ga0209051_1000044 3300025303 Bacteria 305458
117 Ga0209051_1000312 3300025303 Bacteria 75251
118 Ga0209051_1000831 3300025303 Bacteria 31813
119 Ga0209257_1000011 3300025304 Bacteria 1112630
120 Ga0209257_1000082 3300025304 Bacteria 305458
121 Ga0209257_1000669 3300025304 Bacteria 53655
122 Ga0207656_10037604 3300025321 Bacteria 2038
123 Ga0207655_1003172 3300025728 Bacteria 12409
124 Ga0207663_10248298 3300025916 Bacteria 1308
125 Ga0207660_10039724 3300025917 Bacteria 3291
126 Ga0207657_10007991 3300025919 Bacteria 10786
127 Ga0207657_10175513 3300025919 Bacteria 1734
128 Ga0207706_10011199 3300025933 Bacteria 8176
129 Ga0207709_10001654 3300025935 Bacteria 15057
130 Ga0207711_10032646 3300025941 Bacteria 4402
131 Ga0207667_10024701 3300025949 Bacteria 6591
132 Ga0207658_10011622 3300025986 Bacteria 5994
133 Ga0207703_10167495 3300026035 Bacteria 1930
134 Ga0207639_10006150 3300026041 Bacteria 8150
135 Ga0207674_10073760 3300026116 Bacteria 3425
136 Ga0207683_10084655 3300026121 Bacteria 2819
137 Ga0207698_10023571 3300026142 Bacteria 4302
138 Ga0307515_10000028 3300028794 Bacteria 368467
139 Ga0307515_10020708 3300028794 Bacteria 11714
140 Ga0265338_10054221 3300028800 Bacteria 3578
141 Ga0265340_10019705 3300031247 Bacteria 3473
142 Ga0307513_10000021 3300031456 Bacteria 228078
143 Ga0307513_10006783 3300031456 Bacteria 14935
144 Ga0307513_10098856 3300031456 Bacteria 2948
145 Ga0307408_100000219 3300031548 Bacteria 61012
146 Ga0307408_100000755 3300031548 Bacteria 26051
147 Ga0307408_100025479 3300031548 Bacteria 4052
148 Ga0307408_100046720 3300031548 Bacteria 3097
149 Ga0307516_10018607 3300031730 Bacteria 7215
150 Ga0307413_10126039 3300031824 Bacteria 1744
151 Ga0307406_10001790 3300031901 Bacteria 11740
152 Ga0307406_10003120 3300031901 Bacteria 9009
153 Ga0307406_10025336 3300031901 Bacteria 3550
154 Ga0307412_10092646 3300031911 Bacteria 2118
155 Ga0307416_100197098 3300032002 Bacteria 1906
156 Ga0373937_0106880 3300036401 Bacteria 2601
157 Ga0395899_0002117 3300037312 Bacteria 16313
158 Ga0395900_0008050 3300037418 Bacteria 10851
159 Ga0395898_0007583 3300037466 Bacteria 11519
160 Ga0395898_0017050 3300037466 Bacteria 7418
161 Ga0395905_0000249 3300037471 Bacteria 80584
162 Ga0395905_0002244 3300037471 Bacteria 21735
163 Ga0395905_0008622 3300037471 Bacteria 10044
164 Ga0395905_0075784 3300037471 Bacteria 3153
165 Ga0395905_0076683 3300037471 Bacteria 3132
166 Ga0395901_0006064 3300038443 Bacteria 12250
167 Ga0395901_0282699 3300038443 Bacteria 1723
168 Ga0439436_0008697 3300041404 Bacteria 3121
169 Ga0439439_0009083 3300041406 Bacteria 2359
170 Ga0439466_0000623 3300041411 Bacteria 13326
171 Ga0439466_0000905 3300041411 Bacteria 11282
172 Ga0439465_0000324 3300041413 Bacteria 13542
173 Ga0439431_0000372 3300041997 Bacteria 9416
174 Ga0439433_0004411 3300041999 Bacteria 3033
175 Ga0439445_0011348 3300042004 Bacteria 2123
176 Ga0439432_000665 3300042006 Bacteria 12836
177 Ga0439432_013674 3300042006 Bacteria 2757
178 Ga0439449_0000417 3300042007 Bacteria 15719
179 Ga0439449_0001824 3300042007 Bacteria 8379
180 Ga0439449_0024776 3300042007 Bacteria 2242
181 Ga0439452_001683 3300042010 Bacteria 8685
182 Ga0439457_005984 3300042014 Bacteria 3006
183 Ga0439462_0004023 3300042015 Bacteria 3565
184 Ga0439434_0000338 3300042435 Bacteria 13267
185 Ga0439434_0036863 3300042435 Bacteria 1497
186 Ga0450893_0003131 3300042532 Bacteria 2598
187 Ga0466963_0009525 3300044694 Bacteria 5850
188 Ga0466957_0113744 3300044842 Bacteria 1719
189 Ga0466959_0065079 3300045049 Bacteria 2646
190 Ga0466967_0009909 3300045976 Bacteria 7109
191 Ga0495592_0067728 3300046454 Bacteria 2608
192 Ga0495638_0041739 3300046460 Bacteria 2900
193 Ga0495651_0041726 3300046462 Bacteria 3563
194 Ga0495608_0034629 3300046511 Bacteria 3408
195 Ga0495610_0028026 3300046512 Bacteria 2985
196 Ga0495616_0007283 3300046513 Bacteria 6624
197 Ga0495628_0282783 3300046516 Bacteria 1231
198 Ga0495631_0002083 3300046518 Bacteria 11622
199 Ga0495652_0074598 3300046529 Bacteria 2820
200 Ga0495667_0022194 3300046559 Bacteria 4277
201 Ga0495656_0000923 3300046615 Bacteria 9491
202 Ga0495625_0032341 3300046660 Bacteria 3880
203 Ga0495657_0043749 3300046675 Bacteria 3051
204 Ga0495623_0059785 3300046679 Bacteria 2392
205 Ga0495646_0044725 3300046680 Bacteria 2707
206 Ga0495613_0166316 3300046689 Bacteria 1567
207 Ga0495600_0022558 3300046809 Bacteria 4043
208 Ga0495680_0061751 3300047322 Bacteria 2881
209 Ga0495675_0046000 3300047444 Bacteria 2779
210 Ga0495684_0171694 3300047471 Bacteria 1612
211 Ga0495615_0005900 3300048090 Bacteria 2234
212 Ga0496108_0342048 3300048911 Bacteria 1305
213 Ga0496109_0100078 3300048912 Bacteria 2689
214 Ga0496115_0392075 3300048918 Bacteria 1128
215 Ga0496116_0013971 3300048919 Bacteria 6433
216 Ga0496117_0146699 3300048920 Bacteria 1403
217 Ga0496118_0027382 3300048921 Bacteria 4825
218 Ga0496118_0129773 3300048921 Bacteria 1621
219 Ga0496121_0194121 3300048924 Bacteria 1453
220 Ga0496122_0045920 3300048925 Bacteria 3389
221 Ga0496122_0112658 3300048925 Bacteria 1781
222 Ga0496123_0041154 3300048926 Bacteria 3207
223 Ga0496123_0089739 3300048926 Bacteria 1830
224 Ga0496125_0010763 3300048928 Bacteria 9213
225 Ga0496126_0163316 3300048929 Bacteria 1902
226 nmdc:mga03683_1667_c1 3300050489 Bacteria 6683
227 nmdc:mga03683_4594_c1 3300050489 Bacteria 4596
228 nmdc:mga00v17_6013_c1 3300050491 Bacteria 6421
229 nmdc:mga0k408_26845_c1 3300050493 Bacteria 3266
230 nmdc:mga07m45_2919_c1 3300050496 Bacteria 8107
231 Ga0495595_0125040 3300053084 Bacteria 1254
232 Ga0495619_0008286 3300053085 Bacteria 6574
233 Ga0500651_0013209 3300053093 Bacteria 5024
234 Ga0500593_002105 3300053117 Bacteria 7228
235 Ga0500608_010828 3300053122 Bacteria 3932
236 Ga0500628_004092 3300053129 Bacteria 2408
237 Ga0500658_0001284 3300053134 Bacteria 10185
238 Ga0500568_0000542 3300053139 Bacteria 27928
239 Ga0500645_000214 3300053730 Bacteria 44143
240 Ga0500645_001872 3300053730 Bacteria 10056
241 2511246234 2511231002 Bacteria 5042903
242 2513231463 2513020051 Bacteria 6053213
243 2599624622 2599185214 Bacteria 8209958
244 2599672516 2599185226 Bacteria 8233575
245 2599683516 2599185227 Bacteria 8246414
246 2599694125 2599185229 Bacteria 8216126
247 2644295498 2643221652 Bacteria 5140275
248 2644328160 2643221658 Bacteria 6064537
249 2644398526 2643221672 Bacteria 6322190
250 2819596021 2818991446 Bacteria 7757362
251 2831266829 2831265667 Bacteria 7184833
252 2838056888 2838054893 Bacteria 7451788
253 2881101645 2881101125 Bacteria 4590519
254 2885192936 2885192300 Bacteria 5882526
255 2899925371 2899924645 Bacteria 7487985
256 2904455395 2904449895 Bacteria 6927402
257 2904460563 2904456579 Bacteria 6819253
258 2904548472 2904541872 Bacteria 8915136
259 2928038507 2928037797 Bacteria 7273642
260 2928045888 2928044640 Bacteria 7271509
261 2928053563 2928051484 Bacteria 7773759
262 2928067110 2928064002 Bacteria 7419480
263 2928070987 2928070936 Bacteria 8062541
264 2928085063 2928084124 Bacteria 7159212
265 2929163870 2929160207 Bacteria 9075316
266 2929524772 2929520902 Bacteria 6765052
267 2945976874 2945972063 Bacteria 6086495
268 2954771899 2954767861 Bacteria 5535784
269 Ga0075364_10047391
270 JGI24739J22299_10020206
271 JGI25155J39150_1000008
272 JGI25156J39149_1000002
273 JGI25154J39366_1000010
274 JGI25157J39369_1000001
275 JGI25159J45721_1000336
276 JGI25159J45721_1000418
277 JGI25151J46595_10026259
278 JGI25151J46595_10039050
279 rootH2_10022420
280 rootH1_10021739
281 JGI25160J50197_1000342
282 JGI25160J50197_1007627
283 JGI25161J50226_1000259
284 Ga0006562J51391_1037864
285 Ga0055535_1000415
286 Ga0055542_1000004
287 Ga0055526_1003097
288 Ga0055526_1023900
289 Ga0055537_1000102
290 Ga0055524_1000093
291 Ga0055536_1002186
292 Ga0055536_1002866
293 Ga0055536_1013093
294 Ga0055528_1002404
295 Ga0055530_10000285
296 Ga0055530_10003336
297 Ga0055530_10011349
298 Ga0055540_1000196
299 Ga0055540_1002383
300 Ga0055540_1002388
301 Ga0055531_10001042
302 Ga0055531_10002290
303 Ga0055543_1000118
304 Ga0065165_1003509
305 Ga0065165_1004147
306 Ga0065165_1013362
307 Ga0070658_10061446
308 Ga0070660_100174845
309 Ga0070667_100011158
310 Ga0070711_100027929
311 Ga0070662_100045591
312 Ga0070679_100013143
313 Ga0068853_100012188
314 Ga0068855_100008990
315 Ga0068854_100180838
316 Ga0068854_100188244
317 Ga0068851_10078645
318 Ga0068858_100195210
319 Ga0075363_100096070
320 Ga0075362_10020084
321 Ga0075367_10022465
322 Ga0075366_10069087
323 Ga0075370_10000865
324 Ga0075370_10128697
325 Ga0075370_10164547
326 Ga0105244_10006858
327 Ga0105243_10004206
328 Ga0105248_10060083
329 Ga0157371_10097881
330 Ga0157369_10030026
331 Ga0182008_10002743
332 Ga0182008_10053828
333 Ga0157376_10140705
334 Ga0182006_1002804
335 Ga0182006_1018065
336 Ga0182007_10001192
337 Ga0209435_100001
338 Ga0209672_100491
339 Ga0209258_100022
340 Ga0207425_1001474
341 Ga0209646_1000001
342 Ga0209026_1000001
343 Ga0209148_1000034
344 Ga0209759_1000001
345 Ga0209129_1000023
346 Ga0209129_1006455
347 Ga0209565_1000161
348 Ga0209673_1000391
349 Ga0209130_1000118
350 Ga0209130_1000359
351 Ga0209130_1001438
352 Ga0209675_1000128
353 Ga0209675_1001345
354 Ga0209676_1000005
355 Ga0209676_1000054
356 Ga0209676_1000437
357 Ga0209676_1002098
358 Ga0209025_1000717
359 Ga0209025_1001078
360 Ga0209025_1003092
361 Ga0209025_1003928
362 Ga0209025_1006330
363 Ga0209025_1008502
364 Ga0209564_1000610
365 Ga0209564_1000958
366 Ga0209564_1001121
367 Ga0209564_1003261
368 Ga0209758_1000064
369 Ga0209758_1014787
370 Ga0209050_1000007
371 Ga0209050_1000066
372 Ga0209050_1000471
373 Ga0209050_1000723
374 Ga0209050_1001697
375 Ga0209050_1017522
376 Ga0209256_1000003
377 Ga0209256_1000115
378 Ga0209256_1000895
379 Ga0207426_1000001
380 Ga0207426_1000031
381 Ga0207426_1000197
382 Ga0207426_1000997
383 Ga0209051_1000009
384 Ga0209051_1000044
385 Ga0209051_1000312
386 Ga0209051_1000831
387 Ga0209257_1000011
388 Ga0209257_1000082
389 Ga0209257_1000669
390 Ga0207656_10037604
391 Ga0207655_1003172
392 Ga0207663_10248298
393 Ga0207660_10039724
394 Ga0207657_10007991
395 Ga0207657_10175513
396 Ga0207706_10011199
397 Ga0207709_10001654
398 Ga0207711_10032646
399 Ga0207667_10024701
400 Ga0207658_10011622
401 Ga0207703_10167495
402 Ga0207639_10006150
403 Ga0207674_10073760
404 Ga0207683_10084655
405 Ga0207698_10023571
406 Ga0307515_10000028
407 Ga0307515_10020708
408 Ga0265338_10054221
409 Ga0265340_10019705
410 Ga0307513_10000021
411 Ga0307513_10006783
412 Ga0307513_10098856
413 Ga0307408_100000219
414 Ga0307408_100000755
415 Ga0307408_100025479
416 Ga0307408_100046720
417 Ga0307516_10018607
418 Ga0307413_10126039
419 Ga0307406_10001790
420 Ga0307406_10003120
421 Ga0307406_10025336
422 Ga0307412_10092646
423 Ga0307416_100197098
424 Ga0373937_0106880
425 Ga0395899_0002117
426 Ga0395900_0008050
427 Ga0395898_0007583
428 Ga0395898_0017050
429 Ga0395905_0000249
430 Ga0395905_0002244
431 Ga0395905_0008622
432 Ga0395905_0075784
433 Ga0395905_0076683
434 Ga0395901_0006064
435 Ga0395901_0282699
436 Ga0439436_0008697
437 Ga0439439_0009083
438 Ga0439466_0000623
439 Ga0439466_0000905
440 Ga0439465_0000324
441 Ga0439431_0000372
442 Ga0439433_0004411
443 Ga0439445_0011348
444 Ga0439432_000665
445 Ga0439432_013674
446 Ga0439449_0000417
447 Ga0439449_0001824
448 Ga0439449_0024776
449 Ga0439452_001683
450 Ga0439457_005984
451 Ga0439462_0004023
452 Ga0439434_0000338
453 Ga0439434_0036863
454 Ga0450893_0003131
455 Ga0466963_0009525
456 Ga0466957_0113744
457 Ga0466959_0065079
458 Ga0466967_0009909
459 Ga0495592_0067728
460 Ga0495638_0041739
461 Ga0495651_0041726
462 Ga0495608_0034629
463 Ga0495610_0028026
464 Ga0495616_0007283
465 Ga0495628_0282783
466 Ga0495631_0002083
467 Ga0495652_0074598
468 Ga0495667_0022194
469 Ga0495656_0000923
470 Ga0495625_0032341
471 Ga0495657_0043749
472 Ga0495623_0059785
473 Ga0495646_0044725
474 Ga0495613_0166316
475 Ga0495600_0022558
476 Ga0495680_0061751
477 Ga0495675_0046000
478 Ga0495684_0171694
479 Ga0495615_0005900
480 Ga0496108_0342048
481 Ga0496109_0100078
482 Ga0496115_0392075
483 Ga0496116_0013971
484 Ga0496117_0146699
485 Ga0496118_0027382
486 Ga0496118_0129773
487 Ga0496121_0194121
488 Ga0496122_0045920
489 Ga0496122_0112658
490 Ga0496123_0041154
491 Ga0496123_0089739
492 Ga0496125_0010763
493 Ga0496126_0163316
494 nmdc:mga03683_1667_c1
495 nmdc:mga03683_4594_c1
496 nmdc:mga00v17_6013_c1
497 nmdc:mga0k408_26845_c1
498 nmdc:mga07m45_2919_c1
499 Ga0495595_0125040
500 Ga0495619_0008286
501 Ga0500651_0013209
502 Ga0500593_002105
503 Ga0500608_010828
504 Ga0500628_004092
505 Ga0500658_0001284
506 Ga0500568_0000542
507 Ga0500645_000214
508 Ga0500645_001872
509 2511246234
510 2513231463
511 2599624622
512 2599672516
513 2599683516
514 2599694125
515 2644295498
516 2644328160
517 2644398526
518 2819596021
519 2831266829
520 2838056888
521 2881101645
522 2885192936
523 2899925371
524 2904455395
525 2904460563
526 2904548472
527 2928038507
528 2928045888
529 2928053563
530 2928067110
531 2928070987
532 2928085063
533 2929163870
534 2929524772
535 2945976874
536 2954771899

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01872

RibD_C

RibD C-terminal domain

160

368

0.95

PF00383

dCMP_cyt_deam_1

Cytidine and deoxycytidylate deaminase zinc-binding region

11

113

0.89

PF14437

MafB19-deam

MafB19-like deaminase

14

155

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
2b3z-assembly1.cif.gz_B crystal structure of a bifunctional deaminase and reductase involved in riboflavin biosynthesis 0.9147 2 360
2azn-assembly1.cif.gz_A x-ray structure of 2,5-diamino-6-ribosylamino-4(3h)-pyrimidinone 5-phosphate reductase 0.9123 144 359
6p8c-assembly1.cif.gz_B 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate reductase (mthred) from methanothermobacter thermautotrophicus 0.9102 144 361
2hxv-assembly1.cif.gz_A-2 crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828) from thermotoga maritima at 1.80 a resolution 0.9088 1 360
3zpc-assembly1.cif.gz_B acinetobacter baumannii ribd, form 1 0.9034 2 358
ID Description Score Start End Superfamily
af_Q8GWP5_63_211_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9627 2 137 3.40.140.10
4g3mB01 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9565 4 133 3.40.140.10
af_P9WPH1_1_147_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9514 4 131 3.40.140.10
2hxvA01 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9302 2 143 3.40.140.10
2b3zA02 Alpha Beta;3-Layer(aba) Sandwich;Dihydrofolate Reductase, subunit A;Dihydrofolate Reductase, subunit A 0.9247 135 360 3.40.430.10
ID Description Score Start End GO Terms
AF-A0A1F4HSN3-F1-model_v4 deleted 0.9877 2 133
AF-A0A259NN56-F1-model_v4 Riboflavin biosynthesis protein RibD 0.9816 2 113 GO:0008270
GO:0008835
AF-A0A7W5D4F2-F1-model_v4 Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] 0.9812 2 365 GO:0008270
GO:0008703
GO:0008835
GO:0009231
GO:0050661
AF-D9PFX0-F1-model_v4 Protein containing CMP/dCMP deaminase, zinc-binding domain (EC 3.5.4.23) 0.98 2 97 GO:0008270
GO:0008835
GO:0047711
AF-A0A6L3NFN2-F1-model_v4 Riboflavin biosynthesis protein RibD (EC 1.1.1.193) (EC 3.5.4.26) 0.976 2 178 GO:0008270
GO:0008703
GO:0008835
GO:0009231

Map