F376113

General Info

Members Datasets Scaffolds Average Seq Length
269 185 242 436

Family's Representative Sequence

Representative Sequence 3300005985|Ga0081539_10078868|Ga0081539_100788681
Length 500
Sequence LPGRVERRAEAKDARARGSRGDCSQPRVGPWREPRRGKPDEARRERSGFPAPDETAPHPARASLWEAFLSRDNLARALRRVEQNAGAAGIDGMTAAGLRPWLHRYWPEIRRLLEVGTYRPLPVRRVAIPKPSGGERLLGVPTALDRLIQQALLQVLTSVFDPHFSNGSFGFRPGRSAHQAVERARQSIQDGAAWVVDVDLDAFFDRVQHDALMARLARRVDDKRVLRLLRRYLEAGVMADGIHQASEEGTPQGSPLSPLLGNVMLDDLDRELERRGHRFVRYADDLMVYVRSERAGQRIIEGIARYVESRLKLRVNRRKSAVAPATRRPFLGFGFFVRHGEVRVRLDPNARKRAKDRLRKLTARSRSISMEQRLQAVNRYTVGWTAYFAYADTPTPFRELDEWLRRRLRQVRWKEWKRSQNRRRNLRALGIPERAAREWAGSRKGCWRVAGSAILTRALPNAYWQEQGLQGFSDPYRRFRDATRTAGRGPACPVVWEGPG

Samples

Sample ID Description Type Environment
1 2511231052 Sinorhizobium meliloti AK58 Isolate Nodule
2 2519899620 Rhizobium sp. Pop5 Isolate Nodule
3 2687453341 Pirellula sp. SH-Sr6A Isolate Unclassified
4 2791355266 Rhizobium sp. L43 Isolate Nodule
5 2854911287 Brucella lupini LUP21 Isolate Unclassified
6 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
7 2957484790 Sinorhizobium meliloti USDA1464 Isolate Nodule
8 2967735183 Sinorhizobium meliloti USDA1710 Isolate Nodule
9 2970170962 Sinorhizobium meliloti USDA1571 Isolate Nodule
10 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
11 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
12 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
13 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
14 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
15 3300004800 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
16 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
17 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
18 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
19 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
20 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
21 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
22 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
23 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
24 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
25 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
26 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
27 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
28 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
29 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
30 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
31 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
32 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
33 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
34 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
35 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
36 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
37 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
38 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
41 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
45 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
46 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
47 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
50 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
51 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
54 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
55 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
56 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
57 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
58 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
59 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
60 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
61 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
62 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
63 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
64 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
65 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
66 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
67 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
68 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
83 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
84 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
85 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
86 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
87 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
88 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
89 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
90 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
91 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
92 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
93 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
94 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
95 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
96 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
97 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
98 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
99 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
100 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
101 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
102 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
103 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
104 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
105 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
106 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
107 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
108 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
109 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
110 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
111 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
112 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
113 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
114 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
115 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
116 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
117 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
118 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
119 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
120 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
121 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
122 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
123 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
124 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
125 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
126 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
127 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
128 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
129 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
130 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
131 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
132 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
133 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
134 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
135 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
136 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
137 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
138 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
139 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
140 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
141 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
142 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
143 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
144 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
145 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
149 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
150 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
151 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
152 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
153 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
155 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
157 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
158 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
159 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
160 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
161 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
162 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
163 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
164 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
165 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
166 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
167 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
168 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
169 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
170 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
171 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
172 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
173 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
174 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
175 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
176 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
177 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
178 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
179 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
180 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
181 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
182 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
183 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
184 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
185 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.39
Metatranscriptomes 5.58
Isolates 10.04

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.23
Nodule 5.2
Rhizoplane 0.74
Rhizosphere 80.67
Stem 0
Stem Tuber 0
Unclassified 11.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25155J39150_1000001 3300002704 Bacteria 354543
2 JGI25156J39149_1000001 3300002705 Bacteria 354557
3 JGI25154J39366_1000150 3300002738 Bacteria 54544
4 JGI25157J39369_1000044 3300002741 Bacteria 122466
5 JGI25406J46586_10030684 3300003203 Bacteria 2020
6 JGI25406J46586_10035147 3300003203 Bacteria 1832
7 Ga0058861_10009531 3300004800 Bacteria 2131
8 Ga0058861_11957687 3300004800 Bacteria 1866
9 Ga0058862_10079718 3300004803 Bacteria 2405
10 Ga0058862_10090433 3300004803 Bacteria 2243
11 Ga0070683_100129850 3300005329 Bacteria 2384
12 Ga0070690_100041727 3300005330 Bacteria 2905
13 Ga0070680_100140815 3300005336 Bacteria 2023
14 Ga0070680_100142087 3300005336 Bacteria 2013
15 Ga0070668_100036338 3300005347 Bacteria 3759
16 Ga0070668_100039828 3300005347 Bacteria 3594
17 Ga0070669_100139804 3300005353 Bacteria 1866
18 Ga0070674_100110906 3300005356 Bacteria 2014
19 Ga0070694_100082594 3300005444 Bacteria 2238
20 Ga0070708_100169815 3300005445 Unclassified 2036
21 Ga0070681_10136804 3300005458 Bacteria 2380
22 Ga0070681_10150226 3300005458 Bacteria 2256
23 Ga0070698_100303870 3300005471 Bacteria 1526
24 Ga0070679_100101384 3300005530 Bacteria 2865
25 Ga0070679_100109658 3300005530 Bacteria 2746
26 Ga0070679_100236587 3300005530 Bacteria 1785
27 Ga0070679_100282894 3300005530 Bacteria 1611
28 Ga0070684_100231134 3300005535 Bacteria 1689
29 Ga0070697_100164777 3300005536 Bacteria 1874
30 Ga0068855_100098816 3300005563 Bacteria 3362
31 Ga0068855_100258940 3300005563 Bacteria 1939
32 Ga0068857_100092595 3300005577 Bacteria 2706
33 Ga0068856_100206293 3300005614 Bacteria 1980
34 Ga0068856_100207775 3300005614 Bacteria 1973
35 Ga0068861_100087323 3300005719 Bacteria 2454
36 Ga0068861_100129792 3300005719 Bacteria 2044
37 Ga0068861_100164263 3300005719 Bacteria 1834
38 Ga0081455_10042165 3300005937 Bacteria 4006
39 Ga0081538_10009714 3300005981 Bacteria 7981
40 Ga0081538_10057750 3300005981 Bacteria 2257
41 Ga0081539_10041862 3300005985 Bacteria 2673
42 Ga0081539_10060323 3300005985 Bacteria 2084
43 Ga0081539_10078868 3300005985 Bacteria 1737
44 Ga0070715_10042163 3300006163 Bacteria 1917
45 Ga0075427_10002216 3300006194 Bacteria 2587
46 Ga0075428_100152093 3300006844 Bacteria 2514
47 Ga0075430_100132970 3300006846 Bacteria 2073
48 Ga0075431_100282656 3300006847 Unclassified 1680
49 Ga0105240_10159982 3300009093 Bacteria 2676
50 Ga0111539_10342793 3300009094 Bacteria 1739
51 Ga0105245_10291068 3300009098 Bacteria 1600
52 Ga0105241_10107478 3300009174 Bacteria 2229
53 Ga0105241_10139277 3300009174 Bacteria 1974
54 Ga0105249_10268180 3300009553 Bacteria 1700
55 Ga0105239_10188391 3300010375 Bacteria 2309
56 Ga0157369_10223422 3300013105 Bacteria 1970
57 Ga0157374_10122130 3300013296 Bacteria 2515
58 Ga0157374_10229425 3300013296 Bacteria 1823
59 Ga0163162_10137044 3300013306 Bacteria 2559
60 Ga0163162_10179659 3300013306 Bacteria 2242
61 Ga0157372_10187266 3300013307 Bacteria 2397
62 Ga0157375_10171219 3300013308 Bacteria 2319
63 Ga0157375_10211126 3300013308 Bacteria 2099
64 Ga0163163_10078783 3300014325 Bacteria 3292
65 Ga0157376_10024043 3300014969 Bacteria 4778
66 Ga0197907_11246007 3300020069 Bacteria 1790
67 Ga0206356_10890710 3300020070 Bacteria 2071
68 Ga0206355_1024140 3300020076 Bacteria 1975
69 Ga0206355_1719754 3300020076 Bacteria 1883
70 Ga0206352_10892716 3300020078 Bacteria 1954
71 Ga0206350_11115441 3300020080 Bacteria 2412
72 Ga0206354_10938285 3300020081 Bacteria 2495
73 Ga0213874_10016137 3300021377 Bacteria 1982
74 Ga0213876_10076432 3300021384 Bacteria 1768
75 Ga0224712_10012524 3300022467 Bacteria 2673
76 Ga0224712_10023529 3300022467 Bacteria 2140
77 Ga0224712_10033898 3300022467 Bacteria 1873
78 Ga0209435_100012 3300025206 Bacteria 401621
79 Ga0209646_1000026 3300025246 Bacteria 401621
80 Ga0209026_1000014 3300025250 Bacteria 401621
81 Ga0209759_1000012 3300025256 Bacteria 401621
82 Ga0207685_10021017 3300025905 Bacteria 2180
83 Ga0207654_10064203 3300025911 Bacteria 2158
84 Ga0207707_10100919 3300025912 Bacteria 2522
85 Ga0207707_10110335 3300025912 Bacteria 2404
86 Ga0207695_10188003 3300025913 Bacteria 1984
87 Ga0207660_10130080 3300025917 Bacteria 1915
88 Ga0207652_10166708 3300025921 Bacteria 1975
89 Ga0207646_10103067 3300025922 Bacteria 2559
90 Ga0207694_10139706 3300025924 Bacteria 1947
91 Ga0207661_10161441 3300025944 Bacteria 1944
92 Ga0207667_10160014 3300025949 Bacteria 2316
93 Ga0207708_10107492 3300026075 Bacteria 2163
94 Ga0207702_10158338 3300026078 Bacteria 2066
95 Ga0207674_10061518 3300026116 Bacteria 3794
96 Ga0207674_10121284 3300026116 Bacteria 2582
97 Ga0207675_100176904 3300026118 Bacteria 2042
98 Ga0207675_100199652 3300026118 Bacteria 1921
99 Ga0265326_10019178 3300028558 Bacteria 1966
100 Ga0265323_10034316 3300028653 Bacteria 1874
101 Ga0265338_10225616 3300028800 Bacteria 1396
102 Ga0265760_10015122 3300031090 Bacteria 2212
103 Ga0265316_10084962 3300031344 Bacteria 2422
104 Ga0265316_10102941 3300031344 Bacteria 2168
105 Ga0265316_10110007 3300031344 Bacteria 2087
106 Ga0265316_10111696 3300031344 Bacteria 2069
107 Ga0316579_10055775 3300031691 Bacteria 1854
108 Ga0316576_10096183 3300031727 Bacteria 2210
109 Ga0316576_10112148 3300031727 Bacteria 2044
110 Ga0316577_10065871 3300031733 Bacteria 2022
111 Ga0316577_10099250 3300031733 Bacteria 1631
112 Ga0307410_10123716 3300031852 Bacteria 1890
113 Ga0307411_10116970 3300032005 Bacteria 1920
114 Ga0316583_10009426 3300032133 Bacteria 3514
115 Ga0316583_10029027 3300032133 Bacteria 1973
116 Ga0316585_10019819 3300032137 Bacteria 2053
117 Ga0373930_0016349 3300034816 Bacteria 1402
118 Ga0373928_0014158 3300035084 Bacteria 1609
119 Ga0316574_0139513 3300035398 Bacteria 1561
120 Ga0373935_0094082 3300035692 Bacteria 1966
121 Ga0373927_0091645 3300035695 Bacteria 1974
122 Ga0373933_0072029 3300035724 Bacteria 2104
123 Ga0316582_0160851 3300036647 Bacteria 1521
124 Ga0316584_0092693 3300036712 Bacteria 2261
125 Ga0316584_0105365 3300036712 Bacteria 2110
126 Ga0373925_0111928 3300037068 Bacteria 2110
127 Ga0400491_16440 3300038727 Bacteria 1616
128 Ga0400489_03603 3300039093 Bacteria 5099
129 Ga0400489_40995 3300039093 Bacteria 1443
130 Ga0436365_0259628 3300039437 Bacteria 1996
131 Ga0436363_0184415 3300039450 Bacteria 31021
132 Ga0436362_0540050 3300039453 Bacteria 2135
133 Ga0436362_0710547 3300039453 Bacteria 2594
134 Ga0451798_0459680 3300041458 Bacteria 1636
135 Ga0451833_0317016 3300041491 Bacteria 2079
136 Ga0451851_0412413 3300041507 Bacteria 2174
137 Ga0439456_010277 3300042013 Bacteria 1933
138 Ga0439458_0022155 3300042157 Bacteria 1474
139 Ga0439435_0023778 3300042436 Bacteria 1611
140 Ga0466966_0083002 3300044684 Bacteria 1994
141 Ga0466963_0088086 3300044694 Bacteria 2111
142 Ga0466964_0025856 3300044706 Bacteria 2295
143 Ga0453684_0096625 3300044712 Bacteria 3628
144 Ga0453684_0253237 3300044712 Bacteria 2021
145 Ga0466959_0082171 3300045049 Bacteria 2321
146 Ga0451576_0179375 3300045051 Bacteria 2211
147 Ga0451576_0206802 3300045051 Bacteria 2049
148 Ga0466958_0070098 3300045836 Bacteria 2144
149 Ga0466967_0167190 3300045976 Bacteria 2067
150 Ga0495580_0049307 3300046472 Bacteria 2979
151 Ga0495580_0083107 3300046472 Bacteria 2231
152 Ga0495639_0089544 3300046475 Bacteria 1442
153 Ga0495584_0061299 3300046491 Bacteria 1891
154 Ga0495606_0075967 3300046507 Bacteria 2101
155 Ga0495608_0044018 3300046511 Bacteria 2981
156 Ga0495610_0003642 3300046512 Bacteria 11863
157 Ga0495618_0111659 3300046514 Bacteria 1750
158 Ga0495620_0004724 3300046515 Bacteria 7655
159 Ga0495630_0124219 3300046517 Bacteria 1958
160 Ga0495654_0041675 3300046530 Bacteria 2282
161 Ga0495597_0036694 3300046542 Bacteria 2205
162 Ga0495611_0040968 3300046648 Bacteria 2065
163 Ga0495635_0042605 3300046663 Bacteria 3134
164 Ga0495588_0107883 3300046674 Bacteria 1466
165 Ga0495658_0042640 3300046683 Bacteria 2534
166 Ga0495624_0099150 3300046690 Bacteria 1794
167 Ga0495581_0065008 3300047315 Bacteria 2108
168 Ga0495604_0000084 3300047317 Bacteria 82199
169 Ga0495676_0209511 3300047321 Bacteria 1349
170 Ga0495680_0106854 3300047322 Bacteria 2079
171 Ga0495687_001575 3300047443 Bacteria 20711
172 Ga0495687_029386 3300047443 Bacteria 2545
173 Ga0495687_034896 3300047443 Bacteria 2267
174 Ga0496109_0176678 3300048912 Bacteria 2005
175 Ga0495678_038011 3300049459 Bacteria 1951
176 Ga0501031_0066283 3300049568 Bacteria 2352
177 Ga0501032_0098757 3300049569 Bacteria 1934
178 Ga0501033_0062565 3300049570 Bacteria 2741
179 Ga0501036_0088880 3300049572 Bacteria 2610
180 Ga0501036_0144415 3300049572 Bacteria 2007
181 Ga0501037_0095065 3300049573 Bacteria 2154
182 Ga0501038_0085634 3300049574 Bacteria 2649
183 Ga0501039_0108226 3300049575 Bacteria 2172
184 Ga0501040_0052632 3300049576 Bacteria 2787
185 Ga0501040_0123778 3300049576 Bacteria 1815
186 Ga0501041_0039500 3300049577 Bacteria 2864
187 Ga0501041_0081504 3300049577 Bacteria 1992
188 Ga0501042_0050599 3300049578 Bacteria 2963
189 Ga0501042_0108206 3300049578 Bacteria 2001
190 Ga0501042_0114657 3300049578 Bacteria 1940
191 Ga0501043_0094980 3300049579 Bacteria 2343
192 Ga0501043_0172259 3300049579 Bacteria 1688
193 Ga0501046_0093024 3300049580 Bacteria 2317
194 Ga0501046_0117370 3300049580 Bacteria 2027
195 Ga0501048_0056203 3300049582 Bacteria 2792
196 Ga0501048_0154629 3300049582 Bacteria 1622
197 Ga0501068_0076850 3300049584 Bacteria 2044
198 Ga0501068_0079886 3300049584 Bacteria 2005
199 Ga0501070_0113880 3300049586 Bacteria 2234
200 Ga0501070_0145830 3300049586 Bacteria 1954
201 Ga0501071_0071929 3300049587 Bacteria 2521
202 Ga0501071_0113651 3300049587 Bacteria 2002
203 Ga0501072_0070682 3300049588 Bacteria 2757
204 Ga0501072_0090753 3300049588 Bacteria 2425
205 Ga0501072_0120372 3300049588 Bacteria 2091
206 Ga0501073_0017040 3300049589 Bacteria 5264
207 Ga0501073_0090429 3300049589 Bacteria 2127
208 Ga0501074_0001267 3300049590 Bacteria 16694
209 Ga0501074_0079773 3300049590 Bacteria 2348
210 Ga0501074_0261078 3300049590 Bacteria 1231
211 Ga0501075_0036710 3300049591 Bacteria 3658
212 Ga0501075_0122130 3300049591 Bacteria 1982
213 Ga0501076_0075798 3300049592 Bacteria 2696
214 Ga0501076_0140818 3300049592 Bacteria 1959
215 Ga0501076_0153759 3300049592 Bacteria 1872
216 Ga0501077_0086774 3300049593 Bacteria 1983
217 Ga0501077_0087099 3300049593 Bacteria 1979
218 Ga0501079_0000565 3300049741 Bacteria 24354
219 Ga0501079_0097320 3300049741 Bacteria 2281
220 Ga0501080_0118684 3300049742 Bacteria 2452
221 Ga0501080_0174777 3300049742 Bacteria 1979
222 Ga0501081_0109521 3300049743 Bacteria 1959
223 Ga0501083_0130031 3300049744 Bacteria 1650
224 Ga0501035_0156941 3300049822 Bacteria 1971
225 Ga0501035_0293751 3300049822 Bacteria 1371
226 Ga0501044_0165836 3300049823 Bacteria 2183
227 Ga0501045_0064942 3300049824 Bacteria 2679
228 Ga0501045_0113731 3300049824 Bacteria 2007
229 nmdc:mga05p37_364577_c1 3300050507 Bacteria 1698
230 nmdc:mga0qj67_151187_c1 3300050509 Bacteria 1884
231 nmdc:mga08y16_412107_c1 3300050511 Bacteria 1382
232 Ga0500610_0022279 3300053079 Bacteria 3122
233 Ga0500641_0001520 3300053096 Bacteria 8280
234 Ga0500555_019131 3300053103 Bacteria 1972
235 Ga0500562_005910 3300053108 Bacteria 3081
236 Ga0500627_0052106 3300053158 Bacteria 1786
237 Ga0500625_027805 3300053729 Bacteria 2683
238 Ga0501084_0080930 3300054114 Bacteria 2723
239 Ga0501084_0131038 3300054114 Bacteria 2110
240 Ga0501082_0101444 3300060353 Bacteria 2489
241 Ga0501082_0158639 3300060353 Bacteria 1965
242 Ga0530510_0118741 3300061734 Bacteria 1940

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300034816 Ga0373930_0016349 Ga0373930_0016349_280_1320 346
2 iso_pu_bacteria 2915597211 2915598021 346
3 3300046530 Ga0495654_0041675 Ga0495654_0041675_902_2197 360
4 3300031344 Ga0265316_10111696 Ga0265316_101116962 365
5 3300036647 Ga0316582_0160851 Ga0316582_0160851_71_1240 367
6 3300036712 Ga0316584_0092693 Ga0316584_0092693_445_1614 367
7 3300046511 Ga0495608_0044018 Ga0495608_0044018_474_1823 381
8 3300031727 Ga0316576_10112148 Ga0316576_101121481 384
9 3300005981 Ga0081538_10057750 Ga0081538_100577501 386
10 3300050511 nmdc:mga08y16_412107_c1 nmdc:mga08y16_412107_c1_163_1332 388
11 3300005336 Ga0070680_100140815 Ga0070680_1001408151 390
12 3300005530 Ga0070679_100101384 Ga0070679_1001013843 390
13 3300046475 Ga0495639_0089544 Ga0495639_0089544_38_1213 390
14 3300047321 Ga0495676_0209511 Ga0495676_0209511_82_1257 390
15 3300049590 Ga0501074_0261078 Ga0501074_0261078_32_1204 390
16 3300049586 Ga0501070_0113880 Ga0501070_0113880_789_2144 391
17 3300005444 Ga0070694_100082594 Ga0070694_1000825941 395
18 3300031691 Ga0316579_10055775 Ga0316579_100557751 395
19 3300031733 Ga0316577_10099250 Ga0316577_100992501 395
20 3300032133 Ga0316583_10029027 Ga0316583_100290272 396
21 3300035724 Ga0373933_0072029 Ga0373933_0072029_404_1819 396
22 3300036712 Ga0316584_0105365 Ga0316584_0105365_114_1481 396
23 3300042013 Ga0439456_010277 Ga0439456_010277_75_1442 396
24 3300042436 Ga0439435_0023778 Ga0439435_0023778_114_1481 396
25 3300046517 Ga0495630_0124219 Ga0495630_0124219_224_1639 396
26 3300047317 Ga0495604_0000084 Ga0495604_0000084_4925_6316 396
27 3300032133 Ga0316583_10009426 Ga0316583_100094262 397
28 3300044712 Ga0453684_0253237 Ga0453684_0253237_550_1890 397
29 3300005445 Ga0070708_100169815 Ga0070708_1001698151 398
30 3300005981 Ga0081538_10009714 Ga0081538_100097141 398
31 3300049584 Ga0501068_0076850 Ga0501068_0076850_187_1443 398
32 3300049586 Ga0501070_0145830 Ga0501070_0145830_69_1325 398
33 3300049589 Ga0501073_0017040 Ga0501073_0017040_196_1452 398
34 3300049590 Ga0501074_0001267 Ga0501074_0001267_15364_16620 398
35 3300049592 Ga0501076_0153759 Ga0501076_0153759_34_1290 398
36 3300049741 Ga0501079_0000565 Ga0501079_0000565_22474_23730 398
37 3300049742 Ga0501080_0174777 Ga0501080_0174777_633_1889 398
38 3300047443 Ga0495687_001575 Ga0495687_001575_19021_20412 399
39 3300053729 Ga0500625_027805 Ga0500625_027805_153_1466 399
40 3300003203 JGI25406J46586_10035147 JGI25406J46586_100351471 400
41 3300005985 Ga0081539_10060323 Ga0081539_100603232 400
42 3300013296 Ga0157374_10122130 Ga0157374_101221302 400
43 3300013306 Ga0163162_10137044 Ga0163162_101370441 400
44 3300014969 Ga0157376_10024043 Ga0157376_100240432 400
45 3300031852 Ga0307410_10123716 Ga0307410_101237161 400
46 3300032005 Ga0307411_10116970 Ga0307411_101169701 400
47 3300035695 Ga0373927_0091645 Ga0373927_0091645_158_1414 400
48 3300037068 Ga0373925_0111928 Ga0373925_0111928_295_1551 400
49 3300046472 Ga0495580_0083107 Ga0495580_0083107_903_2159 400
50 3300046514 Ga0495618_0111659 Ga0495618_0111659_358_1614 400
51 3300049578 Ga0501042_0108206 Ga0501042_0108206_447_1703 400
52 3300049587 Ga0501071_0113651 Ga0501071_0113651_491_1747 400
53 3300049588 Ga0501072_0070682 Ga0501072_0070682_1243_2499 400
54 3300021377 Ga0213874_10016137 Ga0213874_100161371 401
55 3300021384 Ga0213876_10076432 Ga0213876_100764321 401
56 3300031727 Ga0316576_10096183 Ga0316576_100961832 401
57 3300039437 Ga0436365_0259628 Ga0436365_0259628_592_1902 401
58 3300039450 Ga0436363_0184415 Ga0436363_0184415_29032_30342 401
59 3300039453 Ga0436362_0540050 Ga0436362_0540050_178_1488 401
60 3300044684 Ga0466966_0083002 Ga0466966_0083002_252_1604 401
61 3300045049 Ga0466959_0082171 Ga0466959_0082171_460_1812 401
62 3300003203 JGI25406J46586_10030684 JGI25406J46586_100306842 402
63 3300005985 Ga0081539_10041862 Ga0081539_100418622 402
64 3300005471 Ga0070698_100303870 Ga0070698_1003038701 404
65 3300048912 Ga0496109_0176678 Ga0496109_0176678_502_1896 404
66 3300005719 Ga0068861_100087323 Ga0068861_1000873232 405
67 3300028800 Ga0265338_10225616 Ga0265338_102256161 405
68 3300031344 Ga0265316_10102941 Ga0265316_101029411 405
69 3300005614 Ga0068856_100206293 Ga0068856_1002062931 409
70 3300009174 Ga0105241_10107478 Ga0105241_101074781 409
71 3300025911 Ga0207654_10064203 Ga0207654_100642031 409
72 3300026078 Ga0207702_10158338 Ga0207702_101583381 409
73 3300028653 Ga0265323_10034316 Ga0265323_100343161 410
74 3300031344 Ga0265316_10110007 Ga0265316_101100072 410
75 3300044706 Ga0466964_0025856 Ga0466964_0025856_639_2033 410
76 3300045976 Ga0466967_0167190 Ga0466967_0167190_80_1474 410
77 3300031090 Ga0265760_10015122 Ga0265760_100151221 411
78 3300044694 Ga0466963_0088086 Ga0466963_0088086_613_2007 411
79 3300045836 Ga0466958_0070098 Ga0466958_0070098_192_1586 411
80 3300005330 Ga0070690_100041727 Ga0070690_1000417272 412
81 3300004800 Ga0058861_11957687 Ga0058861_119576871 414
82 3300004803 Ga0058862_10079718 Ga0058862_100797181 414
83 3300005329 Ga0070683_100129850 Ga0070683_1001298501 414
84 3300005336 Ga0070680_100142087 Ga0070680_1001420871 414
85 3300005458 Ga0070681_10150226 Ga0070681_101502261 414
86 3300005530 Ga0070679_100236587 Ga0070679_1002365871 414
87 3300005530 Ga0070679_100282894 Ga0070679_1002828941 414
88 3300005536 Ga0070697_100164777 Ga0070697_1001647771 414
89 3300005563 Ga0068855_100258940 Ga0068855_1002589401 414
90 3300005577 Ga0068857_100092595 Ga0068857_1000925952 414
91 3300005614 Ga0068856_100207775 Ga0068856_1002077751 414
92 3300006163 Ga0070715_10042163 Ga0070715_100421631 414
93 3300009093 Ga0105240_10159982 Ga0105240_101599821 414
94 3300009174 Ga0105241_10139277 Ga0105241_101392771 414
95 3300010375 Ga0105239_10188391 Ga0105239_101883911 414
96 3300013105 Ga0157369_10223422 Ga0157369_102234221 414
97 3300013296 Ga0157374_10229425 Ga0157374_102294251 414
98 3300013307 Ga0157372_10187266 Ga0157372_101872661 414
99 3300013308 Ga0157375_10211126 Ga0157375_102111262 414
100 3300020070 Ga0206356_10890710 Ga0206356_108907101 414
101 3300020076 Ga0206355_1719754 Ga0206355_17197541 414
102 3300022467 Ga0224712_10033898 Ga0224712_100338982 414
103 3300025905 Ga0207685_10021017 Ga0207685_100210171 414
104 3300025912 Ga0207707_10100919 Ga0207707_101009192 414
105 3300025913 Ga0207695_10188003 Ga0207695_101880031 414
106 3300025917 Ga0207660_10130080 Ga0207660_101300801 414
107 3300025924 Ga0207694_10139706 Ga0207694_101397061 414
108 3300025944 Ga0207661_10161441 Ga0207661_101614411 414
109 3300026116 Ga0207674_10121284 Ga0207674_101212843 414
110 3300031344 Ga0265316_10084962 Ga0265316_100849622 414
111 3300047322 Ga0495680_0106854 Ga0495680_0106854_212_1627 414
112 3300049579 Ga0501043_0172259 Ga0501043_0172259_242_1657 414
113 iso_pu_bacteria 2687453341 2688391949 414
114 iso_pu_bacteria 2687453341 2688392118 414
115 iso_pu_bacteria 2687453341 2688392606 414
116 iso_pu_bacteria 2687453341 2688392608 414
117 iso_pu_bacteria 2687453341 2688392994 414
118 iso_pu_bacteria 2687453341 2688393092 414
119 iso_pu_bacteria 2687453341 2688393192 414
120 iso_pu_bacteria 2687453341 2688394768 414
121 iso_pu_bacteria 2687453341 2688395737 414
122 iso_pu_bacteria 2687453341 2688395812 414
123 iso_pu_bacteria 2687453341 2688395826 414
124 3300031733 Ga0316577_10065871 Ga0316577_100658711 415
125 3300032137 Ga0316585_10019819 Ga0316585_100198191 415
126 3300035398 Ga0316574_0139513 Ga0316574_0139513_21_1313 415
127 3300038727 Ga0400491_16440 Ga0400491_16440_181_1476 415
128 3300044712 Ga0453684_0096625 Ga0453684_0096625_1526_2848 415
129 iso_pu_bacteria 2791355266 2793364538 415
130 iso_pu_bacteria 2957484790 2957490009 415
131 iso_pu_bacteria 2967735183 2967736954 415
132 iso_pu_bacteria 2970170962 2970176236 415
133 3300005347 Ga0070668_100036338 Ga0070668_1000363382 416
134 3300005347 Ga0070668_100039828 Ga0070668_1000398284 416
135 3300005353 Ga0070669_100139804 Ga0070669_1001398042 416
136 3300005356 Ga0070674_100110906 Ga0070674_1001109061 416
137 3300005719 Ga0068861_100129792 Ga0068861_1001297923 416
138 3300005719 Ga0068861_100164263 Ga0068861_1001642631 416
139 3300006194 Ga0075427_10002216 Ga0075427_100022162 416
140 3300006846 Ga0075430_100132970 Ga0075430_1001329702 416
141 3300006847 Ga0075431_100282656 Ga0075431_1002826562 416
142 3300009094 Ga0111539_10342793 Ga0111539_103427931 416
143 3300009098 Ga0105245_10291068 Ga0105245_102910681 416
144 3300009553 Ga0105249_10268180 Ga0105249_102681801 416
145 3300013306 Ga0163162_10179659 Ga0163162_101796591 416
146 3300013308 Ga0157375_10171219 Ga0157375_101712192 416
147 3300014325 Ga0163163_10078783 Ga0163163_100787832 416
148 3300026075 Ga0207708_10107492 Ga0207708_101074922 416
149 3300026116 Ga0207674_10061518 Ga0207674_100615182 416
150 3300026118 Ga0207675_100176904 Ga0207675_1001769041 416
151 3300026118 Ga0207675_100199652 Ga0207675_1001996521 416
152 3300050507 nmdc:mga05p37_364577_c1 nmdc:mga05p37_364577_c1_367_1647 416
153 3300050509 nmdc:mga0qj67_151187_c1 nmdc:mga0qj67_151187_c1_513_1793 416
154 iso_pu_bacteria 2915597211 2915599216 416
155 iso_pu_bacteria 2915597211 2915600308 416
156 iso_pu_bacteria 2915597211 2915601578 416
157 iso_pu_bacteria 2915597211 2915601796 416
158 iso_pu_bacteria 2915597211 2915602524 416
159 iso_pu_bacteria 2915597211 2915602571 416
160 iso_pu_bacteria 2915597211 2915603274 416
161 3300045051 Ga0451576_0179375 Ga0451576_0179375_239_1498 417
162 iso_pu_bacteria 2687453341 2688391652 417
163 3300004800 Ga0058861_10009531 Ga0058861_100095312 418
164 3300004803 Ga0058862_10090433 Ga0058862_100904331 418
165 3300005458 Ga0070681_10136804 Ga0070681_101368041 418
166 3300005530 Ga0070679_100109658 Ga0070679_1001096582 418
167 3300005535 Ga0070684_100231134 Ga0070684_1002311341 418
168 3300005563 Ga0068855_100098816 Ga0068855_1000988163 418
169 3300005985 Ga0081539_10078868 Ga0081539_100788681 418
170 3300006844 Ga0075428_100152093 Ga0075428_1001520932 418
171 3300020069 Ga0197907_11246007 Ga0197907_112460071 418
172 3300020076 Ga0206355_1024140 Ga0206355_10241401 418
173 3300020078 Ga0206352_10892716 Ga0206352_108927161 418
174 3300020080 Ga0206350_11115441 Ga0206350_111154412 418
175 3300020081 Ga0206354_10938285 Ga0206354_109382852 418
176 3300022467 Ga0224712_10012524 Ga0224712_100125242 418
177 3300022467 Ga0224712_10023529 Ga0224712_100235292 418
178 3300025912 Ga0207707_10110335 Ga0207707_101103352 418
179 3300025921 Ga0207652_10166708 Ga0207652_101667081 418
180 3300025949 Ga0207667_10160014 Ga0207667_101600141 418
181 3300028558 Ga0265326_10019178 Ga0265326_100191781 418
182 3300035084 Ga0373928_0014158 Ga0373928_0014158_171_1466 418
183 3300035692 Ga0373935_0094082 Ga0373935_0094082_78_1346 418
184 3300039093 Ga0400489_03603 Ga0400489_03603_2975_4231 418
185 3300039093 Ga0400489_40995 Ga0400489_40995_15_1271 418
186 3300039453 Ga0436362_0710547 Ga0436362_0710547_881_2200 418
187 3300045051 Ga0451576_0206802 Ga0451576_0206802_142_1416 418
188 3300046472 Ga0495580_0049307 Ga0495580_0049307_1128_2396 418
189 3300046512 Ga0495610_0003642 Ga0495610_0003642_7353_8609 418
190 3300046663 Ga0495635_0042605 Ga0495635_0042605_1491_2759 418
191 3300046674 Ga0495588_0107883 Ga0495588_0107883_71_1339 418
192 3300046683 Ga0495658_0042640 Ga0495658_0042640_565_1833 418
193 3300046690 Ga0495624_0099150 Ga0495624_0099150_63_1331 418
194 3300047315 Ga0495581_0065008 Ga0495581_0065008_267_1535 418
195 3300049568 Ga0501031_0066283 Ga0501031_0066283_349_1665 418
196 3300049569 Ga0501032_0098757 Ga0501032_0098757_92_1408 418
197 3300049570 Ga0501033_0062565 Ga0501033_0062565_311_1627 418
198 3300049572 Ga0501036_0088880 Ga0501036_0088880_123_1439 418
199 3300049572 Ga0501036_0144415 Ga0501036_0144415_127_1443 418
200 3300049573 Ga0501037_0095065 Ga0501037_0095065_645_1961 418
201 3300049574 Ga0501038_0085634 Ga0501038_0085634_584_1900 418
202 3300049575 Ga0501039_0108226 Ga0501039_0108226_314_1630 418
203 3300049576 Ga0501040_0052632 Ga0501040_0052632_244_1560 418
204 3300049576 Ga0501040_0123778 Ga0501040_0123778_72_1388 418
205 3300049577 Ga0501041_0039500 Ga0501041_0039500_869_2185 418
206 3300049577 Ga0501041_0081504 Ga0501041_0081504_112_1428 418
207 3300049578 Ga0501042_0050599 Ga0501042_0050599_494_1810 418
208 3300049578 Ga0501042_0114657 Ga0501042_0114657_467_1783 418
209 3300049579 Ga0501043_0094980 Ga0501043_0094980_106_1422 418
210 3300049580 Ga0501046_0093024 Ga0501046_0093024_861_2177 418
211 3300049580 Ga0501046_0117370 Ga0501046_0117370_125_1441 418
212 3300049582 Ga0501048_0056203 Ga0501048_0056203_938_2254 418
213 3300049582 Ga0501048_0154629 Ga0501048_0154629_162_1478 418
214 3300049584 Ga0501068_0079886 Ga0501068_0079886_98_1414 418
215 3300049587 Ga0501071_0071929 Ga0501071_0071929_579_1895 418
216 3300049588 Ga0501072_0090753 Ga0501072_0090753_281_1597 418
217 3300049588 Ga0501072_0120372 Ga0501072_0120372_670_1986 418
218 3300049589 Ga0501073_0090429 Ga0501073_0090429_113_1429 418
219 3300049590 Ga0501074_0079773 Ga0501074_0079773_315_1631 418
220 3300049591 Ga0501075_0036710 Ga0501075_0036710_1250_2566 418
221 3300049591 Ga0501075_0122130 Ga0501075_0122130_94_1410 418
222 3300049592 Ga0501076_0075798 Ga0501076_0075798_121_1437 418
223 3300049592 Ga0501076_0140818 Ga0501076_0140818_545_1861 418
224 3300049593 Ga0501077_0086774 Ga0501077_0086774_569_1885 418
225 3300049593 Ga0501077_0087099 Ga0501077_0087099_127_1443 418
226 3300049741 Ga0501079_0097320 Ga0501079_0097320_131_1447 418
227 3300049742 Ga0501080_0118684 Ga0501080_0118684_1054_2370 418
228 3300049743 Ga0501081_0109521 Ga0501081_0109521_99_1415 418
229 3300049744 Ga0501083_0130031 Ga0501083_0130031_128_1444 418
230 3300049822 Ga0501035_0156941 Ga0501035_0156941_108_1424 418
231 3300049822 Ga0501035_0293751 Ga0501035_0293751_92_1348 418
232 3300049823 Ga0501044_0165836 Ga0501044_0165836_282_1598 418
233 3300049824 Ga0501045_0064942 Ga0501045_0064942_245_1561 418
234 3300049824 Ga0501045_0113731 Ga0501045_0113731_122_1438 418
235 3300053096 Ga0500641_0001520 Ga0500641_0001520_6946_8202 418
236 3300053103 Ga0500555_019131 Ga0500555_019131_513_1886 418
237 3300054114 Ga0501084_0080930 Ga0501084_0080930_425_1741 418
238 3300054114 Ga0501084_0131038 Ga0501084_0131038_634_1950 418
239 3300060353 Ga0501082_0101444 Ga0501082_0101444_197_1513 418
240 3300060353 Ga0501082_0158639 Ga0501082_0158639_89_1405 418
241 3300061734 Ga0530510_0118741 Ga0530510_0118741_539_1855 418
242 iso_pu_bacteria 2854911287 2854911423 418
243 3300002704 JGI25155J39150_1000001 JGI25155J39150_1000001264 419
244 3300002705 JGI25156J39149_1000001 JGI25156J39149_100000169 419
245 3300002738 JGI25154J39366_1000150 JGI25154J39366_100015029 419
246 3300002741 JGI25157J39369_1000044 JGI25157J39369_100004469 419
247 3300005937 Ga0081455_10042165 Ga0081455_100421652 419
248 3300025206 Ga0209435_100012 Ga0209435_100012315 419
249 3300025246 Ga0209646_1000026 Ga0209646_1000026315 419
250 3300025250 Ga0209026_1000014 Ga0209026_1000014315 419
251 3300025256 Ga0209759_1000012 Ga0209759_1000012315 419
252 3300025922 Ga0207646_10103067 Ga0207646_101030672 419
253 3300041458 Ga0451798_0459680 Ga0451798_0459680_157_1416 419
254 3300041491 Ga0451833_0317016 Ga0451833_0317016_150_1409 419
255 3300041507 Ga0451851_0412413 Ga0451851_0412413_212_1471 419
256 3300042157 Ga0439458_0022155 Ga0439458_0022155_114_1373 419
257 3300046491 Ga0495584_0061299 Ga0495584_0061299_149_1408 419
258 3300046507 Ga0495606_0075967 Ga0495606_0075967_510_1769 419
259 3300046515 Ga0495620_0004724 Ga0495620_0004724_1202_2461 419
260 3300046542 Ga0495597_0036694 Ga0495597_0036694_141_1400 419
261 3300046648 Ga0495611_0040968 Ga0495611_0040968_68_1327 419
262 3300047443 Ga0495687_029386 Ga0495687_029386_1018_2277 419
263 3300047443 Ga0495687_034896 Ga0495687_034896_51_1310 419
264 3300049459 Ga0495678_038011 Ga0495678_038011_145_1404 419
265 3300053079 Ga0500610_0022279 Ga0500610_0022279_1556_2815 419
266 3300053108 Ga0500562_005910 Ga0500562_005910_1526_2785 419
267 3300053158 Ga0500627_0052106 Ga0500627_0052106_341_1600 419
268 iso_pu_bacteria 2511231052 2511501184 419
269 iso_pu_bacteria 2519899620 2520381260 419

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00078

RVT_1

Reverse transcriptase (RNA-dependent DNA polymerase)

128

335

0.94

PF08388

GIIM

Group II intron, maturase-specific domain

351

430

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
6ar1-assembly2.cif.gz_D structure of a thermostable group ii intron reverse transcriptase with template-primer and its functional and evolutionary implications (rt/duplex (nat)) 0.949 2 419
6ar1-assembly1.cif.gz_A structure of a thermostable group ii intron reverse transcriptase with template-primer and its functional and evolutionary implications (rt/duplex (nat)) 0.9459 2 419
8t2r-assembly1.cif.gz_D structure of a group ii intron ribonucleoprotein in the pre-ligation (pre-2f) state 0.9406 2 414
6ar1-assembly2.cif.gz_D structure of a thermostable group ii intron reverse transcriptase with template-primer and its functional and evolutionary implications (rt/duplex (nat)) 0.9402 2 419
7uin-assembly1.cif.gz_D cryoem structure of an group ii intron retroelement 0.9375 2 414
ID Description Score Start End Superfamily
af_Q47688_90_332_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9463 64 268 3.30.70.270
af_P05511_299_561_3.20.20.210 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.8948 64 268 3.20.20.210
af_Q54BA4_491_738_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8858 73 260 3.30.70.270
af_Q55E47_391_640_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8818 64 260 3.30.70.270
af_Q54EA8_349_594_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.88 64 259 3.30.70.270
ID Description Score Start End GO Terms
AF-A0A365TK78-F1-model_v4 RNA-directed DNA polymerase (EC 2.7.7.49) 0.9929 2 285 GO:0003720
GO:0003723
GO:0051607
AF-A0A0W1AT49-F1-model_v4 RNA-directed DNA polymerase (EC 2.7.7.49) 0.9927 2 289 GO:0003723
GO:0003964
GO:0051607
AF-Q67M30-F1-model_v4 Reverse transcriptase domain-containing protein 0.991 1 168
AF-A0A2R4N317-F1-model_v4 Group II intron reverse transcriptase/maturase 0.9905 2 168 GO:0003964
AF-A0A5S3RJT2-F1-model_v4 RNA-directed DNA polymerase (EC 2.7.7.49) 0.9904 70 258 GO:0003723
GO:0003964
GO:0051607

Feature Viewer

pLDDT pTM Quality
93.94 0.87 High
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Predicted Structure (AlphaFold2)

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