F376201

General Info

Members Datasets Scaffolds Average Seq Length
269 179 538 312

Family's Representative Sequence

Representative Sequence 3300009766|Ga0123342_1013631|Ga0123342_10136317
Length 384
Sequence METLANLESFVRSAELGGFSAAARRLSITPAAVSRNVATLEANLGGRLFQRSTRKLTLTEAGERFFAAIRDDLENLQSAIAAVTTDQGEPSGVLKISMSPAFGTGYVLPLLPDFLKRYPLVRPEWMFENRPVDLIAEGYDAAIGGGFELTAGVIARTLAPAHLIAVASPVYMKDRVPPFDPAGLSALDGIVMRSSSTGRVRQWVMRNVASEEMPAALSDEIVVNDPVAMCHLALLGLGVAMIATADALPYLERGELVRLIPNWYADAGPISLYYANRTLLPAKTRAFIDFITDRFQKDRLAERFAGSLGSIHGSGKQNSSTFSENPLSVCQPTETASARASFRKVSDIRSGTRRSPHAVWMRLTRFTSGPINVKSRRRPEPILP

Samples

Sample ID Description Type Environment
1 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
2 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
3 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
4 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
5 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
8 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
9 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
10 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
11 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
12 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
13 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
14 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
15 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
16 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
17 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
18 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
19 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
20 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
21 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
22 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
23 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
24 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
25 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
26 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
27 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
28 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
31 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
32 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
33 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
34 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
35 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
40 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
41 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
42 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
43 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
48 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
49 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
50 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
51 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
52 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
53 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
54 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
56 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
57 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
59 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
62 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
75 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
77 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
79 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
80 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
81 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
82 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
83 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
84 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
85 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
86 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
87 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
88 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
89 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
90 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
91 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
92 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
93 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
94 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
95 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
96 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
97 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
98 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
99 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
100 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
101 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
102 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
103 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
104 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
105 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
106 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
107 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
108 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
109 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
110 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
111 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
112 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
113 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
114 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
115 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
116 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
117 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
118 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
119 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
120 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
121 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
122 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
123 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
124 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
125 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
126 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
127 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
128 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
129 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
130 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
131 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
132 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
133 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
134 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
135 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
136 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
137 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
138 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
139 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
140 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
141 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
142 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
143 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
144 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
145 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
146 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
147 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
148 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
149 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
150 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
151 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
152 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
153 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
154 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
155 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
156 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
157 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
158 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
159 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
160 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
161 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
162 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
163 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
164 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
165 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
166 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
167 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
168 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
169 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
170 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
171 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
172 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
173 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
174 2510917026 Rhizobium sp. CF80 Isolate Rhizosphere
175 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
176 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
177 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
178 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
179 2919171160 Neorhizobium sp. 2083 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.77
Metatranscriptomes 0
Isolates 2.23

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 31.97
Nodule 2.97
Rhizoplane 3.35
Rhizosphere 52.04
Stem 0
Stem Tuber 0
Unclassified 0.37

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0123342_1013631 3300009766 Bacteria 8064
2 JGI25152J39213_1003028 3300002773 Bacteria 5933
3 JGI25152J39213_1005754 3300002773 Bacteria 3533
4 JGI25150J39212_1015473 3300002774 Bacteria 1271
5 JGI25159J45721_1000186 3300002987 Bacteria 28668
6 JGI25159J45721_1005358 3300002987 Bacteria 4040
7 JGI25165J46597_1000373 3300003214 Bacteria 49990
8 JGI25153J46596_10002207 3300003215 Bacteria 11366
9 JGI25153J46596_10006436 3300003215 Bacteria 5933
10 rootL2_10006737 3300003322 Bacteria 11067
11 rootL2_10146225 3300003322 Bacteria 2255
12 JGI25160J50197_1000252 3300003354 Bacteria 40935
13 JGI25161J50226_1000170 3300003374 Bacteria 44244
14 JGI25161J50226_1000185 3300003374 Bacteria 40935
15 Ga0055538_1000144 3300003751 Bacteria 49990
16 Ga0055539_1000195 3300003752 Bacteria 49990
17 Ga0055533_1000196 3300003756 Bacteria 49990
18 Ga0055525_1000263 3300003759 Bacteria 49990
19 Ga0055524_1035838 3300003775 Bacteria 1346
20 Ga0055528_1005714 3300003790 Bacteria 5738
21 Ga0055528_1024615 3300003790 Bacteria 1799
22 Ga0055540_1032888 3300003792 Bacteria 1180
23 Ga0055531_10008266 3300003794 Bacteria 5530
24 Ga0055541_1000128 3300003841 Bacteria 49990
25 Ga0055543_1000249 3300004625 Bacteria 40973
26 Ga0065165_1000824 3300005262 Bacteria 40973
27 Ga0065165_1002747 3300005262 Bacteria 14021
28 Ga0065704_10074978 3300005289 Bacteria 5870
29 Ga0070669_100256454 3300005353 Bacteria 1394
30 Ga0070675_100368146 3300005354 Bacteria 1277
31 Ga0070667_100432309 3300005367 Bacteria 1201
32 Ga0070709_10186662 3300005434 Bacteria 1460
33 Ga0070700_100035682 3300005441 Bacteria 3011
34 Ga0070678_100113749 3300005456 Bacteria 2122
35 Ga0070695_100041202 3300005545 Bacteria 2926
36 Ga0070665_100501306 3300005548 Bacteria 1225
37 Ga0068861_100357602 3300005719 Bacteria 1283
38 Ga0075365_10021212 3300006038 Bacteria 4048
39 Ga0075365_10109668 3300006038 Bacteria 1896
40 Ga0075365_10309430 3300006038 Bacteria 1112
41 Ga0075364_10012226 3300006051 Bacteria 5244
42 Ga0070712_100210540 3300006175 Bacteria 1533
43 Ga0070712_100251621 3300006175 Bacteria 1412
44 Ga0075367_10021830 3300006178 Bacteria 3584
45 Ga0075366_10107015 3300006195 Bacteria 1681
46 Ga0075428_100003135 3300006844 Bacteria 18063
47 Ga0075428_100012374 3300006844 Bacteria 9494
48 Ga0075428_100110816 3300006844 Bacteria 2990
49 Ga0075430_100004959 3300006846 Bacteria 11200
50 Ga0075430_100005686 3300006846 Bacteria 10518
51 Ga0075430_100199334 3300006846 Bacteria 1663
52 Ga0075430_100262381 3300006846 Bacteria 1431
53 Ga0075431_100010450 3300006847 Bacteria 9333
54 Ga0075431_100011852 3300006847 Bacteria 8797
55 Ga0075431_100024487 3300006847 Bacteria 6186
56 Ga0075434_100024226 3300006871 Bacteria 5931
57 Ga0075429_100004144 3300006880 Bacteria 12407
58 Ga0075429_100005409 3300006880 Bacteria 10991
59 Ga0075436_100076681 3300006914 Bacteria 2315
60 Ga0079104_1004680 3300006946 Bacteria 5737
61 Ga0099795_10000249 3300007788 Bacteria 9580
62 Ga0111539_10076188 3300009094 Bacteria 3950
63 Ga0105245_10461315 3300009098 Bacteria 1281
64 Ga0114129_10000159 3300009147 Bacteria 72498
65 Ga0114129_10224446 3300009147 Bacteria 2533
66 Ga0114129_10737627 3300009147 Bacteria 1262
67 Ga0105243_10419524 3300009148 Bacteria 1248
68 Ga0182005_1001776 3300015265 Bacteria 8295
69 Ga0214542_1001786 3300021321 Bacteria 44548
70 Ga0214543_1000038 3300021327 Bacteria 182106
71 Ga0214543_1001549 3300021327 Bacteria 44545
72 Ga0209436_100362 3300025208 Bacteria 20587
73 Ga0207425_1002792 3300025245 Bacteria 5924
74 Ga0207425_1004690 3300025245 Bacteria 4039
75 Ga0209129_1000224 3300025258 Bacteria 63919
76 Ga0209129_1000591 3300025258 Bacteria 24862
77 Ga0209129_1000923 3300025258 Bacteria 17915
78 Ga0209129_1005584 3300025258 Bacteria 4385
79 Ga0209673_1004956 3300025273 Bacteria 6912
80 Ga0209673_1007051 3300025273 Bacteria 5273
81 Ga0209130_1000066 3300025284 Bacteria 192626
82 Ga0209130_1000482 3300025284 Bacteria 40987
83 Ga0209130_1000575 3300025284 Bacteria 35815
84 Ga0209025_1002005 3300025294 Bacteria 23301
85 Ga0209025_1009294 3300025294 Bacteria 6881
86 Ga0209025_1013018 3300025294 Bacteria 5265
87 Ga0209564_1001311 3300025295 Bacteria 26663
88 Ga0209758_1000105 3300025297 Bacteria 221415
89 Ga0209758_1000298 3300025297 Bacteria 97629
90 Ga0209758_1000661 3300025297 Bacteria 51579
91 Ga0209758_1001174 3300025297 Bacteria 33182
92 Ga0209050_1002995 3300025298 Bacteria 13132
93 Ga0209256_1003274 3300025299 Bacteria 11593
94 Ga0209256_1009897 3300025299 Bacteria 4094
95 Ga0209256_1015050 3300025299 Bacteria 2733
96 Ga0207426_1000008 3300025302 Bacteria 848730
97 Ga0207426_1000462 3300025302 Bacteria 63167
98 Ga0209051_1004845 3300025303 Bacteria 8094
99 Ga0209051_1011294 3300025303 Bacteria 4423
100 Ga0209257_1001203 3300025304 Bacteria 32507
101 Ga0209257_1002532 3300025304 Bacteria 17904
102 Ga0207680_10007917 3300025903 Bacteria 5194
103 Ga0207699_10368123 3300025906 Bacteria 1018
104 Ga0207693_10127339 3300025915 Bacteria 2002
105 Ga0207681_10367418 3300025923 Bacteria 1155
106 Ga0207665_10146750 3300025939 Bacteria 1686
107 Ga0207651_10237598 3300025960 Bacteria 1483
108 Ga0207658_10483959 3300025986 Bacteria 1100
109 Ga0207708_10055619 3300026075 Bacteria 3017
110 Ga0207675_100049205 3300026118 Bacteria 3934
111 Ga0207683_10088541 3300026121 Bacteria 2755
112 Ga0209281_1005817 3300027111 Bacteria 3326
113 Ga0209371_1003589 3300027312 Bacteria 7416
114 Ga0207428_10004380 3300027907 Bacteria 13462
115 Ga0207428_10005922 3300027907 Bacteria 11320
116 Ga0268266_10116543 3300028379 Bacteria 2373
117 Ga0307513_10000486 3300031456 Bacteria 57184
118 Ga0307408_100000081 3300031548 Bacteria 106920
119 Ga0307412_10003709 3300031911 Bacteria 8480
120 Ga0307510_10137809 3300033180 Bacteria 2093
121 Ga0373949_0011372 3300035090 Bacteria 1960
122 Ga0373931_0045436 3300035691 Bacteria 2319
123 Ga0373927_0001989 3300035695 Bacteria 15069
124 Ga0373927_0026861 3300035695 Bacteria 3762
125 Ga0373927_0198497 3300035695 Bacteria 1317
126 Ga0373947_0001982 3300035725 Bacteria 12534
127 Ga0373925_0083678 3300037068 Bacteria 2431
128 Ga0439447_005074 3300041407 Bacteria 4427
129 Ga0439465_0005545 3300041413 Bacteria 4021
130 Ga0439465_0035633 3300041413 Bacteria 1596
131 Ga0451802_1399232 3300041460 Bacteria 1373
132 Ga0451804_0865227 3300041463 Bacteria 1329
133 Ga0451833_1352939 3300041491 Bacteria 1504
134 Ga0451841_1040420 3300041498 Bacteria 2141
135 Ga0451849_1296236 3300041505 Bacteria 2210
136 Ga0451851_0993925 3300041507 Bacteria 1699
137 Ga0439431_0012211 3300041997 Bacteria 1971
138 Ga0439449_0030289 3300042007 Bacteria 2016
139 Ga0439450_011876 3300042008 Bacteria 1717
140 Ga0439451_001836 3300042009 Bacteria 4249
141 Ga0439452_024191 3300042010 Bacteria 1555
142 Ga0439456_012468 3300042013 Bacteria 1762
143 Ga0495638_0000300 3300046460 Bacteria 63643
144 Ga0495638_0010337 3300046460 Bacteria 6490
145 Ga0495580_0158101 3300046472 Bacteria 1569
146 Ga0495605_0000920 3300046474 Bacteria 20193
147 Ga0495605_0004438 3300046474 Bacteria 8241
148 Ga0495585_0002348 3300046492 Bacteria 13595
149 Ga0495607_0043112 3300046501 Bacteria 2670
150 Ga0495607_0049574 3300046501 Bacteria 2448
151 Ga0495607_0094346 3300046501 Bacteria 1614
152 Ga0495583_0018002 3300046506 Bacteria 3734
153 Ga0495606_0000291 3300046507 Bacteria 86832
154 Ga0495606_0178750 3300046507 Bacteria 1225
155 Ga0495610_0000471 3300046512 Bacteria 41546
156 Ga0495610_0074706 3300046512 Bacteria 1572
157 Ga0495616_0057456 3300046513 Bacteria 1918
158 Ga0495620_0022385 3300046515 Bacteria 3044
159 Ga0495620_0026507 3300046515 Bacteria 2725
160 Ga0495620_0034775 3300046515 Bacteria 2273
161 Ga0495620_0051405 3300046515 Bacteria 1754
162 Ga0495631_0000464 3300046518 Bacteria 27556
163 Ga0495632_0008256 3300046519 Bacteria 6417
164 Ga0495632_0029424 3300046519 Bacteria 2860
165 Ga0495637_0005483 3300046520 Bacteria 6451
166 Ga0495643_0007678 3300046522 Bacteria 6917
167 Ga0495643_0045063 3300046522 Bacteria 2395
168 Ga0495643_0060600 3300046522 Bacteria 2008
169 Ga0495648_0076825 3300046524 Bacteria 1916
170 Ga0495654_0033576 3300046530 Bacteria 2596
171 Ga0495654_0098679 3300046530 Bacteria 1347
172 Ga0495609_0046721 3300046538 Bacteria 1938
173 Ga0495597_0008026 3300046542 Bacteria 5313
174 Ga0495668_0001243 3300046616 Bacteria 25547
175 Ga0495668_0009531 3300046616 Bacteria 5953
176 Ga0495668_0071589 3300046616 Bacteria 1905
177 Ga0495625_0000919 3300046660 Bacteria 39575
178 Ga0495625_0001067 3300046660 Bacteria 35720
179 Ga0495625_0041064 3300046660 Bacteria 3369
180 Ga0495625_0052299 3300046660 Bacteria 2925
181 Ga0495625_0090551 3300046660 Bacteria 2115
182 Ga0495661_0087052 3300046665 Bacteria 1787
183 Ga0495661_0092818 3300046665 Bacteria 1714
184 Ga0495588_0022863 3300046674 Bacteria 3092
185 Ga0495658_0022230 3300046683 Bacteria 3351
186 Ga0495649_0004055 3300046694 Bacteria 9646
187 Ga0495649_0058162 3300046694 Bacteria 2084
188 Ga0495589_0009471 3300046794 Bacteria 5066
189 Ga0495660_0011242 3300046810 Bacteria 5197
190 Ga0495660_0025757 3300046810 Bacteria 3338
191 Ga0495636_0095357 3300047318 Bacteria 1296
192 Ga0495672_0000272 3300047320 Bacteria 71551
193 Ga0495686_0038679 3300047472 Bacteria 3050
194 Ga0495686_0069950 3300047472 Bacteria 2163
195 Ga0495626_0082762 3300048091 Bacteria 1423
196 Ga0496100_0027409 3300048903 Bacteria 3504
197 Ga0496101_0052818 3300048904 Bacteria 2931
198 Ga0496102_0024153 3300048905 Bacteria 5403
199 Ga0496106_0000115 3300048909 Bacteria 61349
200 Ga0496107_0020934 3300048910 Bacteria 4623
201 Ga0496114_0166030 3300048917 Bacteria 1922
202 Ga0496117_0013684 3300048920 Bacteria 7056
203 Ga0496117_0070191 3300048920 Bacteria 2355
204 Ga0496118_0043299 3300048921 Bacteria 3541
205 Ga0496119_0014782 3300048922 Bacteria 6076
206 Ga0496121_0002468 3300048924 Bacteria 28227
207 Ga0496121_0030746 3300048924 Bacteria 4926
208 Ga0496121_0043024 3300048924 Bacteria 3917
209 Ga0496122_0016265 3300048925 Bacteria 7056
210 Ga0496122_0038763 3300048925 Bacteria 3810
211 Ga0496123_0000236 3300048926 Bacteria 111543
212 Ga0496123_0002537 3300048926 Bacteria 22359
213 Ga0496124_0008649 3300048927 Bacteria 10603
214 Ga0496124_0010843 3300048927 Bacteria 9176
215 Ga0496125_0007272 3300048928 Bacteria 11793
216 Ga0496126_0030784 3300048929 Bacteria 5080
217 Ga0496126_0125557 3300048929 Bacteria 2221
218 Ga0495678_019061 3300049459 Bacteria 3071
219 nmdc:mga00v17_122367_c1 3300050491 Bacteria 1658
220 nmdc:mga0yw44_123445_c1 3300050492 Bacteria 1670
221 nmdc:mga0k408_30057_c1 3300050493 Bacteria 3096
222 nmdc:mga06z11_246186_c1 3300050494 Bacteria 1051
223 nmdc:mga06z11_30697_c1 3300050494 Bacteria 2603
224 nmdc:mga05p37_206802_c1 3300050507 Bacteria 2374
225 nmdc:mga05p37_265141_c1 3300050507 Bacteria 2054
226 nmdc:mga05p37_30356_c1 3300050507 Bacteria 6595
227 nmdc:mga05p37_538258_c1 3300050507 Bacteria 1332
228 nmdc:mga09592_13346_c1 3300050508 Bacteria 6709
229 nmdc:mga09592_7184_c1 3300050508 Bacteria 9053
230 nmdc:mga0qj67_19380_c1 3300050509 Bacteria 5197
231 nmdc:mga0qj67_204666_c1 3300050509 Bacteria 1603
232 nmdc:mga0qj67_3783_c1 3300050509 Bacteria 10928
233 nmdc:mga06r32_10011_c1 3300050510 Bacteria 8554
234 nmdc:mga06r32_11166_c1 3300050510 Bacteria 8089
235 nmdc:mga06r32_6510_c1 3300050510 Bacteria 10493
236 nmdc:mga08y16_119_c1 3300050511 Bacteria 67766
237 nmdc:mga08y16_25427_c2 3300050511 Bacteria 5731
238 nmdc:mga0n895_46079_c1 3300050512 Bacteria 4258
239 nmdc:mga0n895_5347_c1 3300050512 Bacteria 10706
240 nmdc:mga08x19_117143_c1 3300050514 Bacteria 1782
241 nmdc:mga0a205_510504_c1 3300050515 Bacteria 1059
242 nmdc:mga0a205_923_c1 3300050515 Bacteria 24235
243 Ga0500610_0000146 3300053079 Bacteria 21158
244 Ga0500646_0019833 3300053090 Bacteria 1782
245 Ga0500651_0104393 3300053093 Bacteria 1735
246 Ga0500556_0090349 3300053104 Unclassified 1169
247 Ga0500557_000231 3300053105 Bacteria 8431
248 Ga0500594_0000758 3300053118 Bacteria 6884
249 Ga0500618_003594 3300053125 Bacteria 5265
250 Ga0500658_0001616 3300053134 Bacteria 8992
251 Ga0500658_0008483 3300053134 Bacteria 3795
252 Ga0500568_0000123 3300053139 Bacteria 69417
253 Ga0500568_0000404 3300053139 Bacteria 32949
254 Ga0500604_0019462 3300053151 Bacteria 1902
255 Ga0500616_0000164 3300053153 Bacteria 110715
256 Ga0500616_0001036 3300053153 Bacteria 29408
257 Ga0500622_0000102 3300053156 Bacteria 86452
258 Ga0500627_0194306 3300053158 Bacteria 910
259 Ga0500633_0036314 3300053160 Bacteria 1628
260 Ga0500645_000198 3300053730 Bacteria 46701
261 Ga0500645_000493 3300053730 Bacteria 26655
262 Ga0500645_014305 3300053730 Bacteria 2531
263 Ga0500645_025989 3300053730 Bacteria 1783
264 2511169305 2510917026 Bacteria 7046020
265 2585997392 2585427633 Bacteria 6413184
266 2586001997 2585427634 Bacteria 6455027
267 2599719870 2599185236 Bacteria 6875203
268 2819686671 2818991461 Bacteria 7026071
269 2919173687 2919171160 Bacteria 6499771
270 Ga0123342_1013631
271 JGI25152J39213_1003028
272 JGI25152J39213_1005754
273 JGI25150J39212_1015473
274 JGI25159J45721_1000186
275 JGI25159J45721_1005358
276 JGI25165J46597_1000373
277 JGI25153J46596_10002207
278 JGI25153J46596_10006436
279 rootL2_10006737
280 rootL2_10146225
281 JGI25160J50197_1000252
282 JGI25161J50226_1000170
283 JGI25161J50226_1000185
284 Ga0055538_1000144
285 Ga0055539_1000195
286 Ga0055533_1000196
287 Ga0055525_1000263
288 Ga0055524_1035838
289 Ga0055528_1005714
290 Ga0055528_1024615
291 Ga0055540_1032888
292 Ga0055531_10008266
293 Ga0055541_1000128
294 Ga0055543_1000249
295 Ga0065165_1000824
296 Ga0065165_1002747
297 Ga0065704_10074978
298 Ga0070669_100256454
299 Ga0070675_100368146
300 Ga0070667_100432309
301 Ga0070709_10186662
302 Ga0070700_100035682
303 Ga0070678_100113749
304 Ga0070695_100041202
305 Ga0070665_100501306
306 Ga0068861_100357602
307 Ga0075365_10021212
308 Ga0075365_10109668
309 Ga0075365_10309430
310 Ga0075364_10012226
311 Ga0070712_100210540
312 Ga0070712_100251621
313 Ga0075367_10021830
314 Ga0075366_10107015
315 Ga0075428_100003135
316 Ga0075428_100012374
317 Ga0075428_100110816
318 Ga0075430_100004959
319 Ga0075430_100005686
320 Ga0075430_100199334
321 Ga0075430_100262381
322 Ga0075431_100010450
323 Ga0075431_100011852
324 Ga0075431_100024487
325 Ga0075434_100024226
326 Ga0075429_100004144
327 Ga0075429_100005409
328 Ga0075436_100076681
329 Ga0079104_1004680
330 Ga0099795_10000249
331 Ga0111539_10076188
332 Ga0105245_10461315
333 Ga0114129_10000159
334 Ga0114129_10224446
335 Ga0114129_10737627
336 Ga0105243_10419524
337 Ga0182005_1001776
338 Ga0214542_1001786
339 Ga0214543_1000038
340 Ga0214543_1001549
341 Ga0209436_100362
342 Ga0207425_1002792
343 Ga0207425_1004690
344 Ga0209129_1000224
345 Ga0209129_1000591
346 Ga0209129_1000923
347 Ga0209129_1005584
348 Ga0209673_1004956
349 Ga0209673_1007051
350 Ga0209130_1000066
351 Ga0209130_1000482
352 Ga0209130_1000575
353 Ga0209025_1002005
354 Ga0209025_1009294
355 Ga0209025_1013018
356 Ga0209564_1001311
357 Ga0209758_1000105
358 Ga0209758_1000298
359 Ga0209758_1000661
360 Ga0209758_1001174
361 Ga0209050_1002995
362 Ga0209256_1003274
363 Ga0209256_1009897
364 Ga0209256_1015050
365 Ga0207426_1000008
366 Ga0207426_1000462
367 Ga0209051_1004845
368 Ga0209051_1011294
369 Ga0209257_1001203
370 Ga0209257_1002532
371 Ga0207680_10007917
372 Ga0207699_10368123
373 Ga0207693_10127339
374 Ga0207681_10367418
375 Ga0207665_10146750
376 Ga0207651_10237598
377 Ga0207658_10483959
378 Ga0207708_10055619
379 Ga0207675_100049205
380 Ga0207683_10088541
381 Ga0209281_1005817
382 Ga0209371_1003589
383 Ga0207428_10004380
384 Ga0207428_10005922
385 Ga0268266_10116543
386 Ga0307513_10000486
387 Ga0307408_100000081
388 Ga0307412_10003709
389 Ga0307510_10137809
390 Ga0373949_0011372
391 Ga0373931_0045436
392 Ga0373927_0001989
393 Ga0373927_0026861
394 Ga0373927_0198497
395 Ga0373947_0001982
396 Ga0373925_0083678
397 Ga0439447_005074
398 Ga0439465_0005545
399 Ga0439465_0035633
400 Ga0451802_1399232
401 Ga0451804_0865227
402 Ga0451833_1352939
403 Ga0451841_1040420
404 Ga0451849_1296236
405 Ga0451851_0993925
406 Ga0439431_0012211
407 Ga0439449_0030289
408 Ga0439450_011876
409 Ga0439451_001836
410 Ga0439452_024191
411 Ga0439456_012468
412 Ga0495638_0000300
413 Ga0495638_0010337
414 Ga0495580_0158101
415 Ga0495605_0000920
416 Ga0495605_0004438
417 Ga0495585_0002348
418 Ga0495607_0043112
419 Ga0495607_0049574
420 Ga0495607_0094346
421 Ga0495583_0018002
422 Ga0495606_0000291
423 Ga0495606_0178750
424 Ga0495610_0000471
425 Ga0495610_0074706
426 Ga0495616_0057456
427 Ga0495620_0022385
428 Ga0495620_0026507
429 Ga0495620_0034775
430 Ga0495620_0051405
431 Ga0495631_0000464
432 Ga0495632_0008256
433 Ga0495632_0029424
434 Ga0495637_0005483
435 Ga0495643_0007678
436 Ga0495643_0045063
437 Ga0495643_0060600
438 Ga0495648_0076825
439 Ga0495654_0033576
440 Ga0495654_0098679
441 Ga0495609_0046721
442 Ga0495597_0008026
443 Ga0495668_0001243
444 Ga0495668_0009531
445 Ga0495668_0071589
446 Ga0495625_0000919
447 Ga0495625_0001067
448 Ga0495625_0041064
449 Ga0495625_0052299
450 Ga0495625_0090551
451 Ga0495661_0087052
452 Ga0495661_0092818
453 Ga0495588_0022863
454 Ga0495658_0022230
455 Ga0495649_0004055
456 Ga0495649_0058162
457 Ga0495589_0009471
458 Ga0495660_0011242
459 Ga0495660_0025757
460 Ga0495636_0095357
461 Ga0495672_0000272
462 Ga0495686_0038679
463 Ga0495686_0069950
464 Ga0495626_0082762
465 Ga0496100_0027409
466 Ga0496101_0052818
467 Ga0496102_0024153
468 Ga0496106_0000115
469 Ga0496107_0020934
470 Ga0496114_0166030
471 Ga0496117_0013684
472 Ga0496117_0070191
473 Ga0496118_0043299
474 Ga0496119_0014782
475 Ga0496121_0002468
476 Ga0496121_0030746
477 Ga0496121_0043024
478 Ga0496122_0016265
479 Ga0496122_0038763
480 Ga0496123_0000236
481 Ga0496123_0002537
482 Ga0496124_0008649
483 Ga0496124_0010843
484 Ga0496125_0007272
485 Ga0496126_0030784
486 Ga0496126_0125557
487 Ga0495678_019061
488 nmdc:mga00v17_122367_c1
489 nmdc:mga0yw44_123445_c1
490 nmdc:mga0k408_30057_c1
491 nmdc:mga06z11_246186_c1
492 nmdc:mga06z11_30697_c1
493 nmdc:mga05p37_206802_c1
494 nmdc:mga05p37_265141_c1
495 nmdc:mga05p37_30356_c1
496 nmdc:mga05p37_538258_c1
497 nmdc:mga09592_13346_c1
498 nmdc:mga09592_7184_c1
499 nmdc:mga0qj67_19380_c1
500 nmdc:mga0qj67_204666_c1
501 nmdc:mga0qj67_3783_c1
502 nmdc:mga06r32_10011_c1
503 nmdc:mga06r32_11166_c1
504 nmdc:mga06r32_6510_c1
505 nmdc:mga08y16_119_c1
506 nmdc:mga08y16_25427_c2
507 nmdc:mga0n895_46079_c1
508 nmdc:mga0n895_5347_c1
509 nmdc:mga08x19_117143_c1
510 nmdc:mga0a205_510504_c1
511 nmdc:mga0a205_923_c1
512 Ga0500610_0000146
513 Ga0500646_0019833
514 Ga0500651_0104393
515 Ga0500556_0090349
516 Ga0500557_000231
517 Ga0500594_0000758
518 Ga0500618_003594
519 Ga0500658_0001616
520 Ga0500658_0008483
521 Ga0500568_0000123
522 Ga0500568_0000404
523 Ga0500604_0019462
524 Ga0500616_0000164
525 Ga0500616_0001036
526 Ga0500622_0000102
527 Ga0500627_0194306
528 Ga0500633_0036314
529 Ga0500645_000198
530 Ga0500645_000493
531 Ga0500645_014305
532 Ga0500645_025989
533 2511169305
534 2585997392
535 2586001997
536 2599719870
537 2819686671
538 2919173687

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

4

63

0.97

PF03466

LysR_substrate

LysR substrate binding domain

87

296

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
1fse-assembly1.cif.gz_A crystal structure of the bacillus subtilis regulatory protein gere 0.8825 1 47
6eo2-assembly1.cif.gz_A conformational dynamism for dna interaction in salmonella typhimurium rcsb response regulator. s207c crossed 0.8812 2 47
4pzj-assembly1.cif.gz_A-2 1.60 angstrom resolution crystal structure of a transcriptional regulator of the lysr family from eggerthella lenta dsm 2243 0.8806 6 69
7trv-assembly1.cif.gz_A crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.8745 1 84
7trv-assembly1.cif.gz_B crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.8738 1 84
ID Description Score Start End Superfamily
3fzvC01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9482 3 73 1.10.10.10
af_P52044_6_90_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9432 5 87 1.10.10.10
af_P0ACR7_1_84_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9395 3 82 1.10.10.10
af_Q57083_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9324 3 81 1.10.10.10
af_P10151_15_101_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9283 3 77 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A1Q5IPR2-F1-model_v4 Transcriptional regulator 0.8998 3 87 GO:0000976
GO:0003700
AF-A0A485CE98-F1-model_v4 D-malate degradation protein R 0.8919 85 300 GO:0003700
GO:0006351
GO:0043565
AF-V7DAT4-F1-model_v4 LysR family transcriptional regulator 0.8905 87 294
AF-A0A410RXX3-F1-model_v4 LysR family transcriptional regulator 0.8808 124 300
AF-A0A356JHX6-F1-model_v4 deleted 0.8776 110 293

Map