F378696

General Info

Members Datasets Scaffolds Average Seq Length
272 210 544 411

Family's Representative Sequence

Representative Sequence 3300053130|Ga0500642_0004196|Ga0500642_0004196_147_1502
Length 451
Sequence MSTCIRPPNRSSVRRQFDDYPHVTSFLPPEGAFSRLGAARRRLIMFGKKKQAELKAGDAKFLSEVRAAQVMDDMSRATWTLYLMALVVIVAIAWASTARVDEITRADGRVVPDGKEQVIASLEGGILRELFVREGMQVQEGQELAQLDPTRFESQQNEAQVKRAALRGTVARLTAEANGRALQFPSDVSALSSVVESETDAYNARKRGLDEAVRSNSRSIELVMKELGVSEAMSAKGLMSEVEVMRLRRQVNDLHLQSQERVNRFRQDASTELVRVQTDLAQIEEQLAGRQDVLRRTVLKSPVRGLVKNIRSVTVGGVVSPGAAMMEIVPITSRVLIEARVKPSEIGFLRVGQTAEVKLAAYDYTTYGGLKGKIEYISPDALGDTEKTAAPDQTYYRVMLRTERSTLREKGKPLTVLPGMTGSVEVRTGERSVLSFLLRPMLKSKEAFRER

Samples

Sample ID Description Type Environment
1 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
7 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
8 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
9 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
10 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
11 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
12 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
13 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
14 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
15 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
16 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
17 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
18 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
19 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
20 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
21 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
22 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
23 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
33 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
34 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
35 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
39 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
40 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
41 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
45 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
46 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
47 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
50 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
52 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
53 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
54 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
56 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
57 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
61 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
62 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
79 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
82 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
83 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
84 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
85 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
86 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
87 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
88 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
89 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
90 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
91 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
92 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
93 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
94 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
95 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
96 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
97 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
98 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
99 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
100 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
101 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
102 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
103 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
104 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
105 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
106 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
107 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
108 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
109 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
110 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
111 3300042000 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z081617_5539 Metagenome Rhizosphere
112 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
113 3300042118 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_082316_2156 Metagenome Rhizosphere
114 3300042120 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_082316_2192 Metagenome Rhizosphere
115 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
116 3300042129 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 Metagenome Rhizosphere
117 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
118 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
119 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
120 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
121 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
122 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
123 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
124 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
125 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
126 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
127 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
128 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
129 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
130 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
131 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
132 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
133 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
134 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
135 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
136 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
137 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
138 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
139 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
140 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
141 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
142 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
143 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
144 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
145 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
146 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
147 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
148 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
149 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
150 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
151 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
152 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
153 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
154 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
155 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
156 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
157 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
158 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
159 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
160 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
161 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
162 3300049129 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
163 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
164 3300049514 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_B_5_drought Metagenome Rhizosphere
165 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
166 3300049658 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_B_0_drought Metagenome Rhizosphere
167 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
168 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
169 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
170 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
171 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
172 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
173 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
174 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
175 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
176 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
177 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
178 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
179 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
180 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
181 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
182 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
183 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
184 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
185 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
186 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
187 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
188 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
189 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
190 2511231025 Pantoea sp. YR343 Isolate Rhizosphere
191 2511231035 Pantoea sp. GM01 Isolate Rhizosphere
192 2585428057 Methylibium sp. YR605 Isolate Rhizosphere
193 2585428058 Methylibium sp. CF468 Isolate Rhizosphere
194 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
195 2588253510 Rhizobacter sp. OV335 Isolate Rhizosphere
196 2597489888 Pseudomonas fluorescens SS101 Isolate Rhizosphere
197 2643221585 Pelomonas sp. Root662 Isolate Unclassified
198 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
199 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
200 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
201 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
202 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
203 2643221656 Pelomonas sp. Root405 Isolate Unclassified
204 2738541337 Pelomonas sp. BT06 Isolate Unclassified
205 2876601092 Pantoea endophytica 596 Isolate Unclassified
206 3007861166 Pseudomonas hamedanensis SWRI65 Isolate Rhizosphere
207 8015687852 Pseudomonas chlororaphis aurantiaca RP4 Isolate Rhizosphere
208 8016733728 Pantoea sp. SORGH_AS 659 Isolate Unclassified
209 8019499862 Kluyvera sp. 1366 Isolate Rhizosphere
210 8054347763 Pseudomonas carnis NWU Be30 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 89.71
Metatranscriptomes 1.1
Isolates 9.19

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 20.22
Nodule 0
Rhizoplane 3.31
Rhizosphere 56.25
Stem 0
Stem Tuber 0
Unclassified 0.37

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500642_0004196 3300053130 Bacteria 4473
2 JGI24740J21852_10002999 3300001979 Bacteria 7471
3 JGI25156J39149_1000326 3300002705 Bacteria 31351
4 JGI25154J39366_1000354 3300002738 Bacteria 26135
5 JGI25157J39369_1000163 3300002741 Bacteria 55914
6 JGI25152J39213_1000361 3300002773 Bacteria 28334
7 JGI25153J46596_10000753 3300003215 Bacteria 19818
8 JGI25153J46596_10006895 3300003215 Bacteria 5673
9 rootH1_10010320 3300003316 Bacteria 29974
10 rootH2_10058548 3300003320 Bacteria 4569
11 rootL2_10004649 3300003322 Bacteria 20682
12 rootL2_10085506 3300003322 Bacteria 3074
13 rootH1_10034297 3300003323 Bacteria 6715
14 rootH1_10077013 3300003323 Bacteria 9645
15 rootH1_10106404 3300003323 Bacteria 2382
16 rootH1_10240293 3300003323 Bacteria 1617
17 Ga0055539_1000886 3300003752 Bacteria 6819
18 Ga0055539_1001763 3300003752 Bacteria 3734
19 Ga0055533_1000006 3300003756 Bacteria 635559
20 Ga0055535_1001019 3300003761 Bacteria 17799
21 Ga0055529_1000175 3300003763 Bacteria 87829
22 Ga0055526_1000848 3300003771 Bacteria 22760
23 Ga0055531_10000203 3300003794 Bacteria 65490
24 Ga0058692_1000112 3300003856 Bacteria 52916
25 Ga0058692_1006906 3300003856 Bacteria 3063
26 Ga0065165_1000283 3300005262 Bacteria 86141
27 Ga0065165_1001215 3300005262 Bacteria 29678
28 Ga0070658_10177753 3300005327 Bacteria 1790
29 Ga0070690_100013245 3300005330 Bacteria 4870
30 Ga0070660_100186872 3300005339 Bacteria 1678
31 Ga0070673_100005304 3300005364 Bacteria 8234
32 Ga0068853_100082857 3300005539 Bacteria 2810
33 Ga0068855_100108336 3300005563 Bacteria 3191
34 Ga0068855_100121470 3300005563 Bacteria 2989
35 Ga0068857_100099598 3300005577 Bacteria 2607
36 Ga0068854_100004327 3300005578 Bacteria 8946
37 Ga0068856_100001213 3300005614 Bacteria 27067
38 Ga0068856_100040165 3300005614 Bacteria 4594
39 Ga0068852_100033410 3300005616 Bacteria 4270
40 Ga0068861_100040046 3300005719 Bacteria 3502
41 Ga0075366_10087362 3300006195 Bacteria 1866
42 Ga0075370_10009704 3300006353 Bacteria 5011
43 Ga0105251_10007191 3300009011 Bacteria 6916
44 Ga0105244_10000720 3300009036 Bacteria 28572
45 Ga0105244_10001972 3300009036 Bacteria 15873
46 Ga0105244_10014181 3300009036 Bacteria 4620
47 Ga0105250_10016053 3300009092 Bacteria 3056
48 Ga0105242_10110402 3300009176 Bacteria 2343
49 Ga0105237_10078628 3300009545 Bacteria 3288
50 Ga0105238_10237051 3300009551 Bacteria 1802
51 Ga0105246_10027859 3300011119 Bacteria 3707
52 Ga0157373_10000508 3300013100 Bacteria 30633
53 Ga0157371_10000203 3300013102 Bacteria 87175
54 Ga0157371_10000389 3300013102 Bacteria 55195
55 Ga0157371_10001221 3300013102 Bacteria 27328
56 Ga0157371_10003451 3300013102 Bacteria 14336
57 Ga0157369_10228376 3300013105 Bacteria 1946
58 Ga0157372_10055217 3300013307 Bacteria 4435
59 Ga0157372_10122901 3300013307 Bacteria 2983
60 Ga0157375_10000480 3300013308 Bacteria 36358
61 Ga0182005_1000390 3300015265 Bacteria 23920
62 Ga0213872_10009395 3300021361 Bacteria 4690
63 Ga0209674_100003 3300025226 Bacteria 2196646
64 Ga0209563_100010 3300025230 Bacteria 1337457
65 Ga0207427_100877 3300025231 Bacteria 13169
66 Ga0209258_100060 3300025242 Bacteria 319881
67 Ga0209258_100437 3300025242 Bacteria 47616
68 Ga0207425_1000410 3300025245 Bacteria 28898
69 Ga0209646_1000242 3300025246 Bacteria 56037
70 Ga0209026_1000311 3300025250 Bacteria 52155
71 Ga0209677_100274 3300025253 Bacteria 34497
72 Ga0209677_100396 3300025253 Bacteria 26411
73 Ga0209677_101726 3300025253 Bacteria 9098
74 Ga0209759_1000373 3300025256 Bacteria 56051
75 Ga0209759_1000818 3300025256 Bacteria 24711
76 Ga0209759_1005836 3300025256 Bacteria 4226
77 Ga0209129_1000144 3300025258 Bacteria 115999
78 Ga0209455_1000093 3300025272 Bacteria 220487
79 Ga0209673_1022259 3300025273 Bacteria 2191
80 Ga0209564_1000029 3300025295 Bacteria 505995
81 Ga0209758_1000043 3300025297 Bacteria 402310
82 Ga0209758_1000434 3300025297 Bacteria 70561
83 Ga0209050_1000197 3300025298 Bacteria 135303
84 Ga0209050_1005754 3300025298 Bacteria 7644
85 Ga0209051_1000674 3300025303 Bacteria 38231
86 Ga0209051_1012756 3300025303 Bacteria 4047
87 Ga0209257_1000017 3300025304 Bacteria 866287
88 Ga0209257_1020687 3300025304 Bacteria 2419
89 Ga0207696_1000048 3300025711 Bacteria 284649
90 Ga0207655_1002204 3300025728 Bacteria 16175
91 Ga0207655_1008634 3300025728 Bacteria 6437
92 Ga0207655_1012161 3300025728 Bacteria 5055
93 Ga0207655_1032149 3300025728 Bacteria 2403
94 Ga0207713_1016438 3300025735 Bacteria 3753
95 Ga0207705_10035278 3300025909 Bacteria 3578
96 Ga0207652_10177759 3300025921 Bacteria 1912
97 Ga0207686_10056986 3300025934 Bacteria 2458
98 Ga0207689_10050962 3300025942 Bacteria 3412
99 Ga0207667_10076003 3300025949 Bacteria 3486
100 Ga0207667_10105306 3300025949 Bacteria 2910
101 Ga0207667_10167775 3300025949 Bacteria 2257
102 Ga0207651_10000345 3300025960 Bacteria 19742
103 Ga0207640_10001287 3300025981 Bacteria 13638
104 Ga0207639_10038195 3300026041 Bacteria 3570
105 Ga0207639_10116533 3300026041 Bacteria 2187
106 Ga0207702_10001598 3300026078 Bacteria 22413
107 Ga0207702_10029209 3300026078 Bacteria 4587
108 Ga0207648_10240947 3300026089 Bacteria 1610
109 Ga0207675_100056399 3300026118 Bacteria 3664
110 Ga0209371_1000062 3300027312 Bacteria 219057
111 Ga0209371_1004550 3300027312 Bacteria 5952
112 Ga0209974_10003188 3300027876 Bacteria 5934
113 Ga0268264_10099649 3300028381 Bacteria 2522
114 Ga0307517_10037350 3300028786 Bacteria 5428
115 Ga0307515_10000011 3300028794 Bacteria 633903
116 Ga0307515_10000842 3300028794 Bacteria 70481
117 Ga0307515_10002513 3300028794 Bacteria 39723
118 Ga0307515_10012271 3300028794 Bacteria 16134
119 Ga0307515_10167270 3300028794 Bacteria 2210
120 Ga0265324_10001776 3300029957 Bacteria 11797
121 Ga0268256_1000088 3300030500 Bacteria 156662
122 Ga0268256_1003589 3300030500 Bacteria 6916
123 Ga0307512_10081051 3300030522 Bacteria 2331
124 Ga0265328_10015282 3300031239 Bacteria 3010
125 Ga0265327_10002230 3300031251 Bacteria 21082
126 Ga0307513_10038720 3300031456 Bacteria 5292
127 Ga0307513_10041837 3300031456 Bacteria 5052
128 Ga0307513_10140635 3300031456 Bacteria 2341
129 Ga0307509_10132026 3300031507 Bacteria 2451
130 Ga0307408_100000030 3300031548 Bacteria 223389
131 Ga0307508_10000333 3300031616 Bacteria 57002
132 Ga0307514_10009121 3300031649 Bacteria 8372
133 Ga0307514_10053720 3300031649 Bacteria 3107
134 Ga0307516_10036821 3300031730 Bacteria 4894
135 Ga0307516_10040033 3300031730 Bacteria 4667
136 Ga0307516_10044603 3300031730 Bacteria 4385
137 Ga0307405_10026056 3300031731 Bacteria 3367
138 Ga0307416_100185060 3300032002 Bacteria 1957
139 Ga0307411_10029821 3300032005 Bacteria 3337
140 Ga0307507_10063485 3300033179 Bacteria 3419
141 Ga0373951_0004455 3300035091 Bacteria 3326
142 Ga0373939_0000302 3300035114 Bacteria 12785
143 Ga0373931_0000150 3300035691 Bacteria 30766
144 Ga0373931_0035830 3300035691 Bacteria 2582
145 Ga0395898_0027863 3300037466 Bacteria 5666
146 Ga0395905_0000678 3300037471 Bacteria 45181
147 Ga0395905_0054368 3300037471 Bacteria 3747
148 Ga0395901_0006809 3300038443 Bacteria 11541
149 Ga0436361_0725841 3300039447 Bacteria 7894
150 Ga0439438_000036 3300041405 Bacteria 66915
151 Ga0439447_003902 3300041407 Bacteria 5230
152 Ga0451789_1174228 3300041443 Bacteria 1341
153 Ga0451789_1340901 3300041443 Bacteria 1364
154 Ga0451795_1635534 3300041456 Bacteria 1391
155 Ga0451800_0504098 3300041459 Bacteria 1688
156 Ga0451800_1105758 3300041459 Bacteria 2063
157 Ga0451804_0069164 3300041463 Bacteria 1369
158 Ga0439437_000436 3300042000 Bacteria 4059
159 Ga0439432_000944 3300042006 Bacteria 10949
160 Ga0450914_000724 3300042118 Bacteria 1736
161 Ga0450917_000023 3300042120 Bacteria 7362
162 Ga0450890_000111 3300042127 Bacteria 13200
163 Ga0450891_000384 3300042129 Bacteria 4606
164 Ga0450892_000366 3300042130 Bacteria 5369
165 Ga0451577_0001771 3300042876 Bacteria 27782
166 Ga0451577_0173053 3300042876 Bacteria 1946
167 Ga0466969_0004405 3300044656 Bacteria 7490
168 Ga0466966_0001100 3300044684 Bacteria 17315
169 Ga0466961_0025833 3300044693 Bacteria 3775
170 Ga0466963_0174116 3300044694 Bacteria 1501
171 Ga0453684_0054503 3300044712 Bacteria 5208
172 Ga0466971_0015823 3300044719 Bacteria 3322
173 Ga0466968_0035071 3300044735 Bacteria 2097
174 Ga0466970_0006541 3300044765 Bacteria 5827
175 Ga0466957_0002089 3300044842 Bacteria 10688
176 Ga0466960_0026108 3300044901 Bacteria 2650
177 Ga0466959_0011256 3300045049 Bacteria 6419
178 Ga0466958_0017720 3300045836 Bacteria 4123
179 Ga0466967_0155236 3300045976 Bacteria 2143
180 Ga0466967_0282969 3300045976 Bacteria 1591
181 Ga0495591_000006 3300046458 Bacteria 390570
182 Ga0495638_0005186 3300046460 Bacteria 9744
183 Ga0495653_0002001 3300046463 Bacteria 16035
184 Ga0495650_0045111 3300046471 Bacteria 1858
185 Ga0495585_0022025 3300046492 Bacteria 3658
186 Ga0495607_0000260 3300046501 Bacteria 56403
187 Ga0495583_0000153 3300046506 Bacteria 115755
188 Ga0495606_0002284 3300046507 Bacteria 22667
189 Ga0495610_0004062 3300046512 Bacteria 10983
190 Ga0495616_0000367 3300046513 Bacteria 35276
191 Ga0495648_0004364 3300046524 Bacteria 12108
192 Ga0495654_0000013 3300046530 Bacteria 327576
193 Ga0495654_0000174 3300046530 Bacteria 63400
194 Ga0495654_0009262 3300046530 Bacteria 5400
195 Ga0495668_0010653 3300046616 Bacteria 5556
196 Ga0495668_0047910 3300046616 Bacteria 2372
197 Ga0495625_0001586 3300046660 Bacteria 26961
198 Ga0495625_0018150 3300046660 Bacteria 5499
199 Ga0495671_0000377 3300046692 Bacteria 36641
200 Ga0495671_0000482 3300046692 Bacteria 30969
201 Ga0495649_0000338 3300046694 Bacteria 40275
202 Ga0495589_0014634 3300046794 Bacteria 4037
203 Ga0495660_0001163 3300046810 Bacteria 18696
204 Ga0495660_0045181 3300046810 Bacteria 2419
205 Ga0495686_0000404 3300047472 Bacteria 68315
206 Ga0496101_0000041 3300048904 Bacteria 163231
207 Ga0496109_0129457 3300048912 Bacteria 2355
208 Ga0496110_0065456 3300048913 Unclassified 3213
209 Ga0496116_0022176 3300048919 Bacteria 4767
210 Ga0496119_0012091 3300048922 Bacteria 7052
211 Ga0496120_0005483 3300048923 Bacteria 10099
212 Ga0496121_0014722 3300048924 Bacteria 8267
213 Ga0496122_0033643 3300048925 Bacteria 4211
214 Ga0496123_0020520 3300048926 Bacteria 5165
215 Ga0496124_0000079 3300048927 Bacteria 212057
216 Ga0496124_0015057 3300048927 Bacteria 7437
217 Ga0496125_0003390 3300048928 Bacteria 19385
218 Ga0501309_000051 3300049129 Bacteria 5928
219 Ga0501310_000180 3300049130 Bacteria 6181
220 Ga0501291_000925 3300049514 Bacteria 3355
221 Ga0501312_004569 3300049528 Bacteria 1639
222 Ga0501211_001232 3300049658 Bacteria 2731
223 Ga0501235_002212 3300049669 Bacteria 4183
224 Ga0501225_0015223 3300049705 Bacteria 2144
225 Ga0501229_000426 3300049706 Bacteria 4751
226 Ga0501262_003537 3300049759 Bacteria 1793
227 Ga0501264_001939 3300049761 Bacteria 2012
228 nmdc:mga03n38_84272_c1 3300050490 Bacteria 1500
229 nmdc:mga00v17_74677_c1 3300050491 Bacteria 2107
230 nmdc:mga0k408_107250_c1 3300050493 Bacteria 1650
231 nmdc:mga07m45_1755_c1 3300050496 Bacteria 9994
232 nmdc:mga07m45_44720_c1 3300050496 Bacteria 2485
233 Ga0500635_0000033 3300053080 Bacteria 97175
234 Ga0500578_0000426 3300053086 Bacteria 51524
235 Ga0500578_0101232 3300053086 Bacteria 1823
236 Ga0500651_0032711 3300053093 Bacteria 3278
237 Ga0500593_000622 3300053117 Bacteria 13637
238 Ga0500608_025090 3300053122 Bacteria 2788
239 Ga0500628_002990 3300053129 Bacteria 2779
240 Ga0500652_000089 3300053131 Bacteria 38735
241 Ga0500586_000311 3300053145 Bacteria 9701
242 Ga0500604_0042402 3300053151 Bacteria 1379
243 Ga0500619_000515 3300053154 Bacteria 6704
244 Ga0500622_0000257 3300053156 Bacteria 54054
245 Ga0500636_0012272 3300053177 Bacteria 5020
246 Ga0500587_007619 3300053739 Bacteria 1406
247 Ga0466962_0002723 3300061719 Bacteria 8395
248 2511379168 2511231025 Bacteria 5324661
249 2511381460 2511231025 Bacteria 5324661
250 2511435414 2511231035 Bacteria 5341610
251 2511437086 2511231035 Bacteria 5341610
252 2587726295 2585428057 Bacteria 6737412
253 2587734470 2585428058 Bacteria 6853932
254 2587756467 2585428062 Bacteria 6842168
255 2588293827 2588253510 Bacteria 6901809
256 2597865377 2597489888 Bacteria 6179543
257 2643936683 2643221585 Bacteria 5812563
258 2643970912 2643221592 Bacteria 6608788
259 2644138833 2643221625 Bacteria 6512927
260 2644221495 2643221639 Bacteria 6649903
261 2644257741 2643221646 Bacteria 6433402
262 2644273931 2643221648 Bacteria 6521465
263 2644318582 2643221656 Bacteria 5809961
264 2739058723 2738541337 Bacteria 6183410
265 2876602359 2876601092 Bacteria 5114497
266 2876605288 2876601092 Bacteria 5114497
267 3007862710 3007861166 Bacteria 6045338
268 8015691911 8015687852 Bacteria 6613826
269 8016734323 8016733728 Bacteria 5274317
270 8019503340 8019499862 Bacteria 5169538
271 8019504666 8019499862 Bacteria 5169538
272 8054350516 8054347763 Bacteria 5901107
273 Ga0500642_0004196
274 JGI24740J21852_10002999
275 JGI25156J39149_1000326
276 JGI25154J39366_1000354
277 JGI25157J39369_1000163
278 JGI25152J39213_1000361
279 JGI25153J46596_10000753
280 JGI25153J46596_10006895
281 rootH1_10010320
282 rootH2_10058548
283 rootL2_10004649
284 rootL2_10085506
285 rootH1_10034297
286 rootH1_10077013
287 rootH1_10106404
288 rootH1_10240293
289 Ga0055539_1000886
290 Ga0055539_1001763
291 Ga0055533_1000006
292 Ga0055535_1001019
293 Ga0055529_1000175
294 Ga0055526_1000848
295 Ga0055531_10000203
296 Ga0058692_1000112
297 Ga0058692_1006906
298 Ga0065165_1000283
299 Ga0065165_1001215
300 Ga0070658_10177753
301 Ga0070690_100013245
302 Ga0070660_100186872
303 Ga0070673_100005304
304 Ga0068853_100082857
305 Ga0068855_100108336
306 Ga0068855_100121470
307 Ga0068857_100099598
308 Ga0068854_100004327
309 Ga0068856_100001213
310 Ga0068856_100040165
311 Ga0068852_100033410
312 Ga0068861_100040046
313 Ga0075366_10087362
314 Ga0075370_10009704
315 Ga0105251_10007191
316 Ga0105244_10000720
317 Ga0105244_10001972
318 Ga0105244_10014181
319 Ga0105250_10016053
320 Ga0105242_10110402
321 Ga0105237_10078628
322 Ga0105238_10237051
323 Ga0105246_10027859
324 Ga0157373_10000508
325 Ga0157371_10000203
326 Ga0157371_10000389
327 Ga0157371_10001221
328 Ga0157371_10003451
329 Ga0157369_10228376
330 Ga0157372_10055217
331 Ga0157372_10122901
332 Ga0157375_10000480
333 Ga0182005_1000390
334 Ga0213872_10009395
335 Ga0209674_100003
336 Ga0209563_100010
337 Ga0207427_100877
338 Ga0209258_100060
339 Ga0209258_100437
340 Ga0207425_1000410
341 Ga0209646_1000242
342 Ga0209026_1000311
343 Ga0209677_100274
344 Ga0209677_100396
345 Ga0209677_101726
346 Ga0209759_1000373
347 Ga0209759_1000818
348 Ga0209759_1005836
349 Ga0209129_1000144
350 Ga0209455_1000093
351 Ga0209673_1022259
352 Ga0209564_1000029
353 Ga0209758_1000043
354 Ga0209758_1000434
355 Ga0209050_1000197
356 Ga0209050_1005754
357 Ga0209051_1000674
358 Ga0209051_1012756
359 Ga0209257_1000017
360 Ga0209257_1020687
361 Ga0207696_1000048
362 Ga0207655_1002204
363 Ga0207655_1008634
364 Ga0207655_1012161
365 Ga0207655_1032149
366 Ga0207713_1016438
367 Ga0207705_10035278
368 Ga0207652_10177759
369 Ga0207686_10056986
370 Ga0207689_10050962
371 Ga0207667_10076003
372 Ga0207667_10105306
373 Ga0207667_10167775
374 Ga0207651_10000345
375 Ga0207640_10001287
376 Ga0207639_10038195
377 Ga0207639_10116533
378 Ga0207702_10001598
379 Ga0207702_10029209
380 Ga0207648_10240947
381 Ga0207675_100056399
382 Ga0209371_1000062
383 Ga0209371_1004550
384 Ga0209974_10003188
385 Ga0268264_10099649
386 Ga0307517_10037350
387 Ga0307515_10000011
388 Ga0307515_10000842
389 Ga0307515_10002513
390 Ga0307515_10012271
391 Ga0307515_10167270
392 Ga0265324_10001776
393 Ga0268256_1000088
394 Ga0268256_1003589
395 Ga0307512_10081051
396 Ga0265328_10015282
397 Ga0265327_10002230
398 Ga0307513_10038720
399 Ga0307513_10041837
400 Ga0307513_10140635
401 Ga0307509_10132026
402 Ga0307408_100000030
403 Ga0307508_10000333
404 Ga0307514_10009121
405 Ga0307514_10053720
406 Ga0307516_10036821
407 Ga0307516_10040033
408 Ga0307516_10044603
409 Ga0307405_10026056
410 Ga0307416_100185060
411 Ga0307411_10029821
412 Ga0307507_10063485
413 Ga0373951_0004455
414 Ga0373939_0000302
415 Ga0373931_0000150
416 Ga0373931_0035830
417 Ga0395898_0027863
418 Ga0395905_0000678
419 Ga0395905_0054368
420 Ga0395901_0006809
421 Ga0436361_0725841
422 Ga0439438_000036
423 Ga0439447_003902
424 Ga0451789_1174228
425 Ga0451789_1340901
426 Ga0451795_1635534
427 Ga0451800_0504098
428 Ga0451800_1105758
429 Ga0451804_0069164
430 Ga0439437_000436
431 Ga0439432_000944
432 Ga0450914_000724
433 Ga0450917_000023
434 Ga0450890_000111
435 Ga0450891_000384
436 Ga0450892_000366
437 Ga0451577_0001771
438 Ga0451577_0173053
439 Ga0466969_0004405
440 Ga0466966_0001100
441 Ga0466961_0025833
442 Ga0466963_0174116
443 Ga0453684_0054503
444 Ga0466971_0015823
445 Ga0466968_0035071
446 Ga0466970_0006541
447 Ga0466957_0002089
448 Ga0466960_0026108
449 Ga0466959_0011256
450 Ga0466958_0017720
451 Ga0466967_0155236
452 Ga0466967_0282969
453 Ga0495591_000006
454 Ga0495638_0005186
455 Ga0495653_0002001
456 Ga0495650_0045111
457 Ga0495585_0022025
458 Ga0495607_0000260
459 Ga0495583_0000153
460 Ga0495606_0002284
461 Ga0495610_0004062
462 Ga0495616_0000367
463 Ga0495648_0004364
464 Ga0495654_0000013
465 Ga0495654_0000174
466 Ga0495654_0009262
467 Ga0495668_0010653
468 Ga0495668_0047910
469 Ga0495625_0001586
470 Ga0495625_0018150
471 Ga0495671_0000377
472 Ga0495671_0000482
473 Ga0495649_0000338
474 Ga0495589_0014634
475 Ga0495660_0001163
476 Ga0495660_0045181
477 Ga0495686_0000404
478 Ga0496101_0000041
479 Ga0496109_0129457
480 Ga0496110_0065456
481 Ga0496116_0022176
482 Ga0496119_0012091
483 Ga0496120_0005483
484 Ga0496121_0014722
485 Ga0496122_0033643
486 Ga0496123_0020520
487 Ga0496124_0000079
488 Ga0496124_0015057
489 Ga0496125_0003390
490 Ga0501309_000051
491 Ga0501310_000180
492 Ga0501291_000925
493 Ga0501312_004569
494 Ga0501211_001232
495 Ga0501235_002212
496 Ga0501225_0015223
497 Ga0501229_000426
498 Ga0501262_003537
499 Ga0501264_001939
500 nmdc:mga03n38_84272_c1
501 nmdc:mga00v17_74677_c1
502 nmdc:mga0k408_107250_c1
503 nmdc:mga07m45_1755_c1
504 nmdc:mga07m45_44720_c1
505 Ga0500635_0000033
506 Ga0500578_0000426
507 Ga0500578_0101232
508 Ga0500651_0032711
509 Ga0500593_000622
510 Ga0500608_025090
511 Ga0500628_002990
512 Ga0500652_000089
513 Ga0500586_000311
514 Ga0500604_0042402
515 Ga0500619_000515
516 Ga0500622_0000257
517 Ga0500636_0012272
518 Ga0500587_007619
519 Ga0466962_0002723
520 2511379168
521 2511381460
522 2511435414
523 2511437086
524 2587726295
525 2587734470
526 2587756467
527 2588293827
528 2597865377
529 2643936683
530 2643970912
531 2644138833
532 2644221495
533 2644257741
534 2644273931
535 2644318582
536 2739058723
537 2876602359
538 2876605288
539 3007862710
540 8015691911
541 8016734323
542 8019503340
543 8019504666
544 8054350516

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13533

Biotin_lipoyl_2

Biotin-lipoyl like

115

162

0.91

PF00529

CusB_dom_1

Cation efflux system protein CusB domain 1

87

428

0.88

PF16576

HlyD_D23

Barrel-sandwich domain of CusB or HlyD membrane-fusion

99

390

0.83

PF13437

HlyD_3

HlyD family secretion protein

298

419

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
2d5d-assembly1.cif.gz_A structure of biotin carboxyl carrier protein (74val start) from pyrococcus horikoshi ot3 ligand free form ii 0.9369 93 122
5gua-assembly1.cif.gz_A structure of biotin carboxyl carrier protein from pyrococcus horikoshi ot3 (delta n79) a138y mutant 0.9343 90 122
5gu9-assembly1.cif.gz_A structure of biotin carboxyl carrier protein from pyrococcus horikoshi ot3 (delta n79) a138i mutant 0.9282 93 123
5ks8-assembly1.cif.gz_F crystal structure of two-subunit pyruvate carboxylase from methylobacillus flagellatus 0.9245 93 123
5ks8-assembly1.cif.gz_D crystal structure of two-subunit pyruvate carboxylase from methylobacillus flagellatus 0.9179 93 123
ID Description Score Start End Superfamily
af_Q54KE6_633_699_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9619 94 123 2.40.50.100
af_Q91ZA3_659_724_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.953 95 123 2.40.50.100
3n6rA04 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9526 92 122 2.40.50.100
af_Q9V9T5_626_691_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9507 94 123 2.40.50.100
af_P9WPQ1_4_71_2.40.50.100 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.9433 96 123 2.40.50.100
ID Description Score Start End GO Terms
AF-A0A378BDQ3-F1-model_v4 HlyD family secretion protein 0.838 86 307
AF-A0A378BDQ3-F1-model_v4 HlyD family secretion protein 0.8216 86 307
AF-A0A2X2RPZ0-F1-model_v4 deleted 0.7529 25 289
AF-A0A227NFS0-F1-model_v4 Secretion protein HlyD 0.7351 55 426 GO:0016020
AF-A0A227NFS0-F1-model_v4 Secretion protein HlyD 0.7298 55 426 GO:0016020

Map