F378701

General Info

Members Datasets Scaffolds Average Seq Length
272 211 540 1027

Family's Representative Sequence

Representative Sequence 3300053161|Ga0500634_0000036|Ga0500634_0000036_19850_23146
Length 1091
Sequence MPSFFIDRPIFAWVVALFISLFGLLAIPKLPVAQYPDVAPTTIEIAAFYPGASSEQIAESVTSLIERELNGAVGLMYHSRATIVATFRPGTDPAMAQIEVQNRVARVEPRLPGPVLQQGLQIEKSTAGYLLVATLSSDDPDFDQDALGDYVSRNVIEEIRRVPGVGRATVFGSERAMRIWIDPEKLTGLNLLPSNVTSAIAAQNAQISAGTIGDLPAASEQQYTATVSVRGQLATPEEFGAIILRSNQDGSIVRLRDVARIEVGRQTYQISTYQNGRPSAAIAVQLAPGGNALATANGVREALDKLSPFFPTGVSYDIPFNTAPFVEISIRSVIHTFVEAIILVFLVMFLFLQNIRYTLIPTLVVPIALLGTFAVLYLLGFSINVLTLFGMVLAIGILVDDAIIVVENTERLMAEEGLSPAEAARKAMRQITGAIIGITLVLVAVFVPLAFMTGSVGVIYRQFSVSMAVSIAFSGFLALSLTPALCATLLKPVAYDSTRQRLVRAGWGGHLDRFLNWFNGFFGRTTHRYVRTVGRVSRRPLRYMVVFALIVMVTGLLYARLPADFLPTEDQGQLLVDIQLPPNASANRTLETTRQIENYYLGDREIRRQIAEAQAAGDKDWVTELSKQLTPTQQATAQTLMVTGSGFSGGGPNAGLGFVILRDWLERDRNQSVQAISERAMHELFAMSGVRDGNVLSILPPAIQGMGTMGGFEFKLLDRSGQGYAALQAAGKELMSNARKSKLINPHSLREVSMPDTAQIKVRIDRDRASALGLSFADINQTLSTAIGSSTTNDFPNQGRMQRVIVQAETGARMAPEDLLRLEVRNAEGQMVPLSSVAEIEWGYGPINVSRFNGYPAMQISGGGAKGVTSGEAMAEMERLAKALPPGFGYQWAGQSLQEQQAGAQVPLLLTLSILVVFLVLAALYESWAIPLSVIMMAPLGMLGSVLAVTLVGMPNDVFFTVGLITIIGLSAKNAVLIVEFAKDLYAEGYDLLDATVEAARLRFRPILMTSLAFGFGVVPLALSTGVASASQRAVGVGVLGGIIAATVLAIFLVPVFFVAVSRMFNTRPKRQGSHSTVFDVDAGSNPAQEH

Samples

Sample ID Description Type Environment
1 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
4 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
5 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
6 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
7 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
8 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
9 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
10 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
11 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
12 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
13 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
14 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
15 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
16 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
17 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
18 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
19 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
22 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
23 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
24 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
25 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
26 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
29 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
30 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
31 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
32 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
33 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
34 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
36 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
37 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
40 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
42 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
43 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
44 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
46 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
62 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
63 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
64 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
65 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
66 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
67 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
68 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
69 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
70 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
71 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
72 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
73 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
74 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
75 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
76 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
77 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
78 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
79 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
80 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
81 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
82 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
83 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
84 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
85 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
86 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
87 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
88 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
89 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
90 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
91 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
92 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
93 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
94 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
95 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
96 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
97 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
98 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
99 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
100 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
101 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
102 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
103 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
104 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
105 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
106 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
107 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
108 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
109 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
110 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
111 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
112 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
113 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
114 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
115 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
116 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
117 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
118 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
119 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
120 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
121 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
122 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
123 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
124 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
125 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
126 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
127 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
128 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
129 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
130 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
141 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
142 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
143 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
144 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
145 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
146 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
148 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
149 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
150 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
151 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
152 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
153 2512047018 Pseudomonas chlororaphis chlororaphis GP72 Isolate Rhizosphere
154 2513237098 Bradyrhizobium elkanii WSM2783 Isolate Nodule
155 2524023210 Bradyrhizobium sp. Ai1a-2 Isolate Nodule
156 2582580891 Pseudomonas chlororaphis YL-1 Isolate Unclassified
157 2588253510 Rhizobacter sp. OV335 Isolate Rhizosphere
158 2597489889 Pseudomonas synxantha BG33R Isolate Rhizosphere
159 2599185160 Pseudomonas sp. NFPP25 Isolate Rhizoplane
160 2599185164 Pseudomonas sp. NFPP13 Isolate Rhizoplane
161 2599185165 Pseudomonas sp. NFPP18 Isolate Rhizoplane
162 2599185181 Pseudomonas sp. NFPP17 Isolate Rhizoplane
163 2599185185 Pseudomonas sp. NFPP07 Isolate Rhizoplane
164 2599185186 Pseudomonas sp. NFPP15 Isolate Rhizoplane
165 2599185189 Pseudomonas sp. NFPP02 Isolate Rhizoplane
166 2599185302 Pseudomonas sp. NFACC43 Isolate Rhizoplane
167 2599185304 Pseudomonas sp. NFACC47-1 Isolate Rhizoplane
168 2599185309 Pseudomonas sp. NFACC49-2 Isolate Rhizoplane
169 2599185310 Pseudomonas sp. NFACC09-4 Isolate Rhizoplane
170 2599185312 Pseudomonas sp. NFACC32-1 Isolate Rhizoplane
171 2599185320 Pseudomonas sp. NFACC36 Isolate Rhizoplane
172 2599185356 Pseudomonas sp. NFPP14 Isolate Rhizoplane
173 2600254931 Pseudomonas sp. NFIX28 Isolate Rhizoplane
174 2600255313 Pseudomonas sp. NFPP16 Isolate Rhizoplane
175 2600255318 Pseudomonas putida NFIX47 Isolate Rhizoplane
176 2603880185 Pseudomonas sp. NFIX46 Isolate Rhizoplane
177 2603880199 Pseudomonas sp. NFIX49 Isolate Rhizoplane
178 2606217733 Pseudomonas aeruginosa NFHH01 Isolate Rhizoplane
179 2623620446 Pseudomonas sp. GR 6-02 Isolate Unclassified
180 2713897149 Pseudomonas fluorescens SF4c Isolate Rhizosphere
181 2740892503 Pseudomonas chlororaphis piscium PCL1391 Isolate Unclassified
182 2747842428 Stenotrophomonas sp. WCS2014-113 Isolate Unclassified
183 2765235840 Stenotrophomonas maltophilia AA1 Isolate Unclassified
184 2775507049 Rhizobium sp. ACO-34A Isolate Unclassified
185 2806310737 Pseudomonas mosselii BS011 Isolate Unclassified
186 2806310745 Pseudomonas mosselii PtA1 Isolate Unclassified
187 2826581358 Pseudomonas viridiflava CDRTc14 Isolate Unclassified
188 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
189 2842815866 Pseudomonas sp. R-72210 Isolate Unclassified
190 2842849001 Pseudomonas sp. R-72008 Isolate Unclassified
191 2885383462 Bradyrhizobium sp. Leo170 Isolate Unclassified
192 2904550169 Stutzerimonas stutzeri 1099 Isolate Rhizosphere
193 2919476304 Duganella sp. 3397 Isolate Unclassified
194 2922386360 Bradyrhizobium archetypum WSM 1744 Isolate Nodule
195 2923153595 Pseudomonas chlororaphis piscium PCL1391 Isolate Unclassified
196 2984286254 Pseudomonas chlororaphis aurantiaca JD37 Isolate Rhizosphere
197 3000017691 Rhodobacteraceae bacterium GH2-2 Isolate Rhizosphere
198 3007252601 Pseudomonas punonensis D1-6 Isolate Unclassified
199 3007395558 Pseudomonas chlororaphis PCL1601 Isolate Rhizosphere
200 3007419365 Pseudomonas vanderleydeniana RW8P3 Isolate Unclassified
201 3007718800 Pseudomonas fluorescens BW11P2 Isolate Rhizosphere
202 8011350971 Pseudomonas sp. 30_B Isolate Rhizosphere
203 8015687852 Pseudomonas chlororaphis aurantiaca RP4 Isolate Rhizosphere
204 8054347763 Pseudomonas carnis NWU Be30 Isolate Unclassified
205 8054929484 Pseudomonas vlassakiae RW4S1 Isolate Rhizosphere
206 8055770955 Pseudomonas chlororaphis qlu-1 Isolate Rhizosphere
207 8056115690 Pseudomonas muyukensis COW39 Isolate Rhizosphere
208 8056120720 Pseudomonas maumuensis COW77 Isolate Rhizosphere
209 8056137416 Pseudomonas fakonensis COW40 Isolate Rhizosphere
210 8056172158 Pseudomonas ekonensis COR58 Isolate Rhizosphere
211 8057798959 Pseudomonas piscis BW16M1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 77.57
Metatranscriptomes 0
Isolates 22.43

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.49
Nodule 1.1
Rhizoplane 9.19
Rhizosphere 52.57
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500634_0000036 3300053161 Bacteria 64860
2 JGI25162J39368_1000004 3300002737 Bacteria 441040
3 JGI25163J39215_1000089 3300002771 Bacteria 38915
4 JGI25164J39214_1000034 3300002772 Bacteria 139998
5 JGI25165J46597_1000011 3300003214 Bacteria 441040
6 Ga0055525_1000105 3300003759 Bacteria 134026
7 Ga0055526_1002097 3300003771 Bacteria 13686
8 Ga0055526_1006946 3300003771 Bacteria 6010
9 Ga0055537_1000041 3300003773 Bacteria 91422
10 Ga0055537_1000072 3300003773 Bacteria 73276
11 Ga0055524_1000007 3300003775 Bacteria 298766
12 Ga0055536_1000025 3300003781 Bacteria 183172
13 Ga0055534_1000250 3300003784 Bacteria 37595
14 Ga0055528_1000089 3300003790 Bacteria 72690
15 Ga0055528_1000444 3300003790 Bacteria 33075
16 Ga0055530_10000007 3300003791 Bacteria 183172
17 Ga0055540_1000296 3300003792 Bacteria 44137
18 Ga0055540_1004440 3300003792 Bacteria 6317
19 Ga0055531_10000042 3300003794 Bacteria 134368
20 Ga0065165_1000094 3300005262 Bacteria 146099
21 Ga0065165_1000404 3300005262 Bacteria 69447
22 Ga0065712_10068088 3300005290 Bacteria 15083
23 Ga0070661_100000837 3300005344 Bacteria 22128
24 Ga0070669_100005123 3300005353 Bacteria 9478
25 Ga0070665_100028088 3300005548 Bacteria 5666
26 Ga0070664_100002549 3300005564 Bacteria 14698
27 Ga0075369_10000830 3300006186 Bacteria 10187
28 Ga0075436_100003033 3300006914 Bacteria 11504
29 Ga0105244_10002334 3300009036 Bacteria 14432
30 Ga0105243_10027812 3300009148 Bacteria 4337
31 Ga0157371_10010657 3300013102 Bacteria 7141
32 Ga0157369_10001922 3300013105 Bacteria 25071
33 Ga0163163_10031857 3300014325 Bacteria 5092
34 Ga0182008_10000177 3300014497 Bacteria 49865
35 Ga0182006_1000017 3300015261 Bacteria 299454
36 Ga0182005_1000007 3300015265 Bacteria 490994
37 Ga0213872_10000002 3300021361 Bacteria 554092
38 Ga0213872_10005599 3300021361 Bacteria 6415
39 Ga0209760_100050 3300025207 Bacteria 106788
40 Ga0209563_100007 3300025230 Bacteria 1579402
41 Ga0207427_100003 3300025231 Bacteria 1035004
42 Ga0209437_100002 3300025233 Bacteria 1574801
43 Ga0209677_102265 3300025253 Bacteria 7437
44 Ga0209148_1000476 3300025254 Bacteria 42273
45 Ga0209233_1000004 3300025261 Bacteria 1574798
46 Ga0209565_1000009 3300025263 Bacteria 751701
47 Ga0209673_1000019 3300025273 Bacteria 449094
48 Ga0209673_1000036 3300025273 Bacteria 323162
49 Ga0209130_1000179 3300025284 Bacteria 90126
50 Ga0209130_1000324 3300025284 Bacteria 55802
51 Ga0209675_1000013 3300025291 Bacteria 448220
52 Ga0209675_1000028 3300025291 Bacteria 281253
53 Ga0209676_1000003 3300025292 Bacteria 1454178
54 Ga0209676_1005176 3300025292 Bacteria 6931
55 Ga0209025_1000178 3300025294 Bacteria 158040
56 Ga0209564_1000058 3300025295 Bacteria 332955
57 Ga0209564_1000240 3300025295 Bacteria 118922
58 Ga0209050_1000004 3300025298 Bacteria 1600040
59 Ga0209050_1004787 3300025298 Bacteria 8922
60 Ga0209256_1000052 3300025299 Bacteria 299374
61 Ga0209051_1000006 3300025303 Bacteria 1015785
62 Ga0209051_1001871 3300025303 Bacteria 16527
63 Ga0209051_1004242 3300025303 Bacteria 8933
64 Ga0209257_1000016 3300025304 Bacteria 908015
65 Ga0207655_1000249 3300025728 Bacteria 87500
66 Ga0207695_10000006 3300025913 Bacteria 1135309
67 Ga0207671_10003789 3300025914 Bacteria 14844
68 Ga0207657_10043541 3300025919 Bacteria 3953
69 Ga0207649_10000509 3300025920 Bacteria 27403
70 Ga0207679_10000185 3300025945 Bacteria 50612
71 Ga0207678_10002830 3300026067 Bacteria 15730
72 Ga0209371_1000568 3300027312 Bacteria 33502
73 Ga0209371_1005118 3300027312 Bacteria 5367
74 Ga0207428_10005288 3300027907 Bacteria 12047
75 Ga0268266_10002465 3300028379 Bacteria 19782
76 Ga0268266_10034639 3300028379 Bacteria 4294
77 Ga0268256_1004958 3300030500 Bacteria 5371
78 Ga0307509_10045000 3300031507 Bacteria 4765
79 Ga0307408_100000006 3300031548 Bacteria 472824
80 Ga0307408_100000414 3300031548 Bacteria 38393
81 Ga0265314_10012824 3300031711 Bacteria 6810
82 Ga0307412_10001690 3300031911 Bacteria 12192
83 Ga0307412_10004435 3300031911 Bacteria 7817
84 Ga0373939_0000089 3300035114 Bacteria 29155
85 Ga0373931_0000787 3300035691 Bacteria 13286
86 Ga0395900_0000261 3300037418 Bacteria 81971
87 Ga0395900_0027027 3300037418 Bacteria 5874
88 Ga0395905_0011569 3300037471 Bacteria 8524
89 Ga0395901_0002657 3300038443 Bacteria 18039
90 Ga0395901_0110449 3300038443 Bacteria 2886
91 Ga0436361_0570400 3300039447 Bacteria 111725
92 Ga0439438_000002 3300041405 Bacteria 618223
93 Ga0466965_0003196 3300044683 Bacteria 7156
94 Ga0466970_0001894 3300044765 Bacteria 10107
95 Ga0466959_0011156 3300045049 Bacteria 6448
96 Ga0466958_0017376 3300045836 Bacteria 4156
97 Ga0466967_0028434 3300045976 Bacteria 4667
98 Ga0495617_000008 3300046452 Bacteria 340369
99 Ga0495627_000008 3300046453 Bacteria 572150
100 Ga0495590_0000288 3300046457 Bacteria 27099
101 Ga0495591_000035 3300046458 Bacteria 169656
102 Ga0495638_0000652 3300046460 Bacteria 38000
103 Ga0495650_0000015 3300046471 Bacteria 557595
104 Ga0495582_0001556 3300046473 Bacteria 12946
105 Ga0495584_0000017 3300046491 Bacteria 149686
106 Ga0495584_0000299 3300046491 Bacteria 34978
107 Ga0495585_0000528 3300046492 Bacteria 36112
108 Ga0495596_0002517 3300046500 Bacteria 9816
109 Ga0495596_0003645 3300046500 Bacteria 7734
110 Ga0495607_0000376 3300046501 Bacteria 46064
111 Ga0495607_0005960 3300046501 Bacteria 8643
112 Ga0495607_0009276 3300046501 Bacteria 6677
113 Ga0495607_0013803 3300046501 Bacteria 5278
114 Ga0495583_0000049 3300046506 Bacteria 216069
115 Ga0495583_0011114 3300046506 Bacteria 5188
116 Ga0495610_0004883 3300046512 Bacteria 9748
117 Ga0495616_0011217 3300046513 Bacteria 5145
118 Ga0495631_0012366 3300046518 Bacteria 4170
119 Ga0495643_0002654 3300046522 Bacteria 13860
120 Ga0495644_0003916 3300046523 Bacteria 5857
121 Ga0495648_0033622 3300046524 Bacteria 3346
122 Ga0495666_0004235 3300046526 Bacteria 7236
123 Ga0495654_0000606 3300046530 Bacteria 28502
124 Ga0495665_0003829 3300046531 Bacteria 8144
125 Ga0495586_0006442 3300046535 Bacteria 6271
126 Ga0495609_0001234 3300046538 Bacteria 17609
127 Ga0495609_0001343 3300046538 Bacteria 16616
128 Ga0495609_0002482 3300046538 Bacteria 11339
129 Ga0495609_0005718 3300046538 Bacteria 6474
130 Ga0495597_0000200 3300046542 Bacteria 54946
131 Ga0495633_0010502 3300046558 Bacteria 5047
132 Ga0495659_0000642 3300046664 Bacteria 12683
133 Ga0495588_0000067 3300046674 Bacteria 238958
134 Ga0495669_0012919 3300046684 Bacteria 3556
135 Ga0495660_0001052 3300046810 Bacteria 19967
136 Ga0495660_0001652 3300046810 Bacteria 14955
137 Ga0495660_0001752 3300046810 Bacteria 14462
138 Ga0495604_0006018 3300047317 Bacteria 9630
139 Ga0495636_0002431 3300047318 Bacteria 7137
140 Ga0495675_0003335 3300047444 Bacteria 9663
141 Ga0495679_005430 3300047446 Bacteria 5646
142 Ga0495685_000925 3300047447 Bacteria 8900
143 Ga0495685_005110 3300047447 Bacteria 4273
144 Ga0495681_0003071 3300047470 Bacteria 11710
145 Ga0495681_0003963 3300047470 Bacteria 10206
146 Ga0495626_0000003 3300048091 Bacteria 427774
147 Ga0496101_0008985 3300048904 Bacteria 6549
148 Ga0496102_0000193 3300048905 Bacteria 83162
149 Ga0496103_0004161 3300048906 Bacteria 8780
150 Ga0496106_0009449 3300048909 Bacteria 7208
151 Ga0496110_0036241 3300048913 Bacteria 4283
152 Ga0496116_0003275 3300048919 Bacteria 16124
153 Ga0496116_0003402 3300048919 Bacteria 15749
154 Ga0496117_0005829 3300048920 Bacteria 12760
155 Ga0496118_0008004 3300048921 Bacteria 11046
156 Ga0496119_0008107 3300048922 Bacteria 9308
157 Ga0496119_0026600 3300048922 Bacteria 4007
158 Ga0496121_0000145 3300048924 Bacteria 156655
159 Ga0496121_0000592 3300048924 Bacteria 68016
160 Ga0496121_0008740 3300048924 Bacteria 11816
161 Ga0496122_0000029 3300048925 Bacteria 336396
162 Ga0496122_0000882 3300048925 Bacteria 55874
163 Ga0496122_0002956 3300048925 Bacteria 23176
164 Ga0496122_0029967 3300048925 Bacteria 4571
165 Ga0496123_0000216 3300048926 Bacteria 117098
166 Ga0496123_0000590 3300048926 Bacteria 61951
167 Ga0496123_0007200 3300048926 Bacteria 10556
168 Ga0496123_0009816 3300048926 Bacteria 8548
169 Ga0496124_0000723 3300048927 Bacteria 54106
170 Ga0496124_0018995 3300048927 Bacteria 6415
171 Ga0496124_0021621 3300048927 Bacteria 5926
172 Ga0496124_0026497 3300048927 Bacteria 5225
173 Ga0496125_0000176 3300048928 Bacteria 140746
174 Ga0496125_0000987 3300048928 Bacteria 44349
175 Ga0496125_0002750 3300048928 Bacteria 22248
176 Ga0496126_0016743 3300048929 Bacteria 7321
177 Ga0496126_0021389 3300048929 Bacteria 6317
178 Ga0496126_0038733 3300048929 Bacteria 4432
179 Ga0495678_000032 3300049459 Bacteria 212537
180 Ga0495678_001055 3300049459 Bacteria 23319
181 Ga0495678_003736 3300049459 Bacteria 9208
182 Ga0501031_0000891 3300049568 Bacteria 18008
183 Ga0501032_0006098 3300049569 Bacteria 8880
184 Ga0501033_0000207 3300049570 Bacteria 56200
185 Ga0501034_0000003 3300049571 Bacteria 471748
186 Ga0501034_0000163 3300049571 Bacteria 125417
187 Ga0501036_0005218 3300049572 Bacteria 10506
188 Ga0501036_0050764 3300049572 Bacteria 3513
189 Ga0501037_0024052 3300049573 Bacteria 4504
190 Ga0501038_0003181 3300049574 Bacteria 15308
191 Ga0501038_0011203 3300049574 Bacteria 8186
192 Ga0501039_0001639 3300049575 Bacteria 16499
193 Ga0501046_0006108 3300049580 Bacteria 10706
194 Ga0501047_0041873 3300049581 Bacteria 4425
195 Ga0501067_0004009 3300049583 Bacteria 8125
196 Ga0501070_0011853 3300049586 Bacteria 7360
197 Ga0501073_0014508 3300049589 Bacteria 5726
198 Ga0501074_0007762 3300049590 Bacteria 7767
199 Ga0501080_0000865 3300049742 Bacteria 24819
200 Ga0501083_0024940 3300049744 Bacteria 4141
201 Ga0501035_0004500 3300049822 Bacteria 13227
202 Ga0501035_0004886 3300049822 Bacteria 12716
203 Ga0501044_0018208 3300049823 Bacteria 7532
204 Ga0501044_0024696 3300049823 Bacteria 6376
205 nmdc:mga03683_2247_c1 3300050489 Bacteria 5956
206 nmdc:mga00v17_7647_c1 3300050491 Bacteria 5781
207 nmdc:mga07m45_93_c1 3300050496 Bacteria 34685
208 nmdc:mga08x19_2444_c1 3300050514 Bacteria 11285
209 Ga0501082_0038033 3300060353 Bacteria 4150
210 2512327309 2512047018 Bacteria 6663241
211 2513673346 2513237098 Bacteria 9902361
212 2524465359 2524023210 Bacteria 9029266
213 2583792500 2582580891 Bacteria 6800976
214 2588291873 2588253510 Bacteria 6901809
215 2597869239 2597489889 Bacteria 6297495
216 2599353021 2599185160 Bacteria 6844013
217 2599378129 2599185164 Bacteria 6841688
218 2599384494 2599185165 Bacteria 6843250
219 2599459855 2599185181 Bacteria 6844519
220 2599485174 2599185185 Bacteria 6652270
221 2599488876 2599185186 Bacteria 6831633
222 2599507404 2599185189 Bacteria 5862825
223 2599944326 2599185302 Bacteria 5954930
224 2599954798 2599185304 Bacteria 5951361
225 2599984274 2599185309 Bacteria 5969593
226 2599991482 2599185310 Bacteria 6014457
227 2600001138 2599185312 Bacteria 5912071
228 2600048927 2599185320 Bacteria 5963263
229 2600212462 2599185356 Bacteria 6843884
230 2600363005 2600254931 Bacteria 6734225
231 2601772630 2600255313 Bacteria 6842543
232 2601799065 2600255318 Bacteria 6383414
233 2606077964 2603880185 Bacteria 6379190
234 2606129862 2603880199 Bacteria 6377649
235 2608382756 2606217733 Bacteria 6360972
236 2624492266 2623620446 Bacteria 6500345
237 2715756865 2713897149 Bacteria 6506249
238 2743736888 2740892503 Bacteria 6855563
239 2743737619 2740892503 Bacteria 6855563
240 2747947926 2747842428 Bacteria 4689383
241 2765579107 2765235840 Bacteria 4663337
242 2776911392 2775507049 Bacteria 6284736
243 2807407889 2806310737 Bacteria 5751088
244 2807456192 2806310745 Bacteria 5742165
245 2826581574 2826581358 Bacteria 5963467
246 2834645271 2834641062 Bacteria 5559922
247 2842821070 2842815866 Bacteria 5947510
248 2842854197 2842849001 Bacteria 5924277
249 2885386207 2885383462 Bacteria 9473874
250 2904552601 2904550169 Bacteria 6221258
251 2919478357 2919476304 Bacteria 5888696
252 2922389490 2922386360 Bacteria 7017218
253 2923155916 2923153595 Bacteria 6870622
254 2923156661 2923153595 Bacteria 6870622
255 2984289408 2984286254 Bacteria 6702062
256 3000021272 3000017691 Bacteria 3772574
257 3007253495 3007252601 Bacteria 4559114
258 3007396064 3007395558 Bacteria 6755444
259 3007422300 3007419365 Bacteria 7026924
260 3007719953 3007718800 Bacteria 5971527
261 8011353946 8011350971 Bacteria 6158957
262 8015690879 8015687852 Bacteria 6613826
263 8054352249 8054347763 Bacteria 5901107
264 8054934682 8054929484 Bacteria 5599761
265 8055774050 8055770955 Bacteria 6827675
266 8056119115 8056115690 Bacteria 5527654
267 8056123998 8056120720 Bacteria 5758328
268 8056140192 8056137416 Bacteria 6147080
269 8056174424 8056172158 Bacteria 6133900
270 8057800372 8057798959 Bacteria 6713499
271 Ga0500634_0000036
272 JGI25162J39368_1000004
273 JGI25163J39215_1000089
274 JGI25164J39214_1000034
275 JGI25165J46597_1000011
276 Ga0055525_1000105
277 Ga0055526_1002097
278 Ga0055526_1006946
279 Ga0055537_1000041
280 Ga0055537_1000072
281 Ga0055524_1000007
282 Ga0055536_1000025
283 Ga0055534_1000250
284 Ga0055528_1000089
285 Ga0055528_1000444
286 Ga0055530_10000007
287 Ga0055540_1000296
288 Ga0055540_1004440
289 Ga0055531_10000042
290 Ga0065165_1000094
291 Ga0065165_1000404
292 Ga0065712_10068088
293 Ga0070661_100000837
294 Ga0070669_100005123
295 Ga0070665_100028088
296 Ga0070664_100002549
297 Ga0075369_10000830
298 Ga0075436_100003033
299 Ga0105244_10002334
300 Ga0105243_10027812
301 Ga0157371_10010657
302 Ga0157369_10001922
303 Ga0163163_10031857
304 Ga0182008_10000177
305 Ga0182006_1000017
306 Ga0182005_1000007
307 Ga0213872_10000002
308 Ga0213872_10005599
309 Ga0209760_100050
310 Ga0209563_100007
311 Ga0207427_100003
312 Ga0209437_100002
313 Ga0209677_102265
314 Ga0209148_1000476
315 Ga0209233_1000004
316 Ga0209565_1000009
317 Ga0209673_1000019
318 Ga0209673_1000036
319 Ga0209130_1000179
320 Ga0209130_1000324
321 Ga0209675_1000013
322 Ga0209675_1000028
323 Ga0209676_1000003
324 Ga0209676_1005176
325 Ga0209025_1000178
326 Ga0209564_1000058
327 Ga0209564_1000240
328 Ga0209050_1000004
329 Ga0209050_1004787
330 Ga0209256_1000052
331 Ga0209051_1000006
332 Ga0209051_1001871
333 Ga0209051_1004242
334 Ga0209257_1000016
335 Ga0207655_1000249
336 Ga0207695_10000006
337 Ga0207671_10003789
338 Ga0207657_10043541
339 Ga0207649_10000509
340 Ga0207679_10000185
341 Ga0207678_10002830
342 Ga0209371_1000568
343 Ga0209371_1005118
344 Ga0207428_10005288
345 Ga0268266_10002465
346 Ga0268266_10034639
347 Ga0268256_1004958
348 Ga0307509_10045000
349 Ga0307408_100000006
350 Ga0307408_100000414
351 Ga0265314_10012824
352 Ga0307412_10001690
353 Ga0307412_10004435
354 Ga0373939_0000089
355 Ga0373931_0000787
356 Ga0395900_0000261
357 Ga0395900_0027027
358 Ga0395905_0011569
359 Ga0395901_0002657
360 Ga0395901_0110449
361 Ga0436361_0570400
362 Ga0439438_000002
363 Ga0466965_0003196
364 Ga0466970_0001894
365 Ga0466959_0011156
366 Ga0466958_0017376
367 Ga0466967_0028434
368 Ga0495617_000008
369 Ga0495627_000008
370 Ga0495590_0000288
371 Ga0495591_000035
372 Ga0495638_0000652
373 Ga0495650_0000015
374 Ga0495582_0001556
375 Ga0495584_0000017
376 Ga0495584_0000299
377 Ga0495585_0000528
378 Ga0495596_0002517
379 Ga0495596_0003645
380 Ga0495607_0000376
381 Ga0495607_0005960
382 Ga0495607_0009276
383 Ga0495607_0013803
384 Ga0495583_0000049
385 Ga0495583_0011114
386 Ga0495610_0004883
387 Ga0495616_0011217
388 Ga0495631_0012366
389 Ga0495643_0002654
390 Ga0495644_0003916
391 Ga0495648_0033622
392 Ga0495666_0004235
393 Ga0495654_0000606
394 Ga0495665_0003829
395 Ga0495586_0006442
396 Ga0495609_0001234
397 Ga0495609_0001343
398 Ga0495609_0002482
399 Ga0495609_0005718
400 Ga0495597_0000200
401 Ga0495633_0010502
402 Ga0495659_0000642
403 Ga0495588_0000067
404 Ga0495669_0012919
405 Ga0495660_0001052
406 Ga0495660_0001652
407 Ga0495660_0001752
408 Ga0495604_0006018
409 Ga0495636_0002431
410 Ga0495675_0003335
411 Ga0495679_005430
412 Ga0495685_000925
413 Ga0495685_005110
414 Ga0495681_0003071
415 Ga0495681_0003963
416 Ga0495626_0000003
417 Ga0496101_0008985
418 Ga0496102_0000193
419 Ga0496103_0004161
420 Ga0496106_0009449
421 Ga0496110_0036241
422 Ga0496116_0003275
423 Ga0496116_0003402
424 Ga0496117_0005829
425 Ga0496118_0008004
426 Ga0496119_0008107
427 Ga0496119_0026600
428 Ga0496121_0000145
429 Ga0496121_0000592
430 Ga0496121_0008740
431 Ga0496122_0000029
432 Ga0496122_0000882
433 Ga0496122_0002956
434 Ga0496122_0029967
435 Ga0496123_0000216
436 Ga0496123_0000590
437 Ga0496123_0007200
438 Ga0496123_0009816
439 Ga0496124_0000723
440 Ga0496124_0018995
441 Ga0496124_0021621
442 Ga0496124_0026497
443 Ga0496125_0000176
444 Ga0496125_0000987
445 Ga0496125_0002750
446 Ga0496126_0016743
447 Ga0496126_0021389
448 Ga0496126_0038733
449 Ga0495678_000032
450 Ga0495678_001055
451 Ga0495678_003736
452 Ga0501031_0000891
453 Ga0501032_0006098
454 Ga0501033_0000207
455 Ga0501034_0000003
456 Ga0501034_0000163
457 Ga0501036_0005218
458 Ga0501036_0050764
459 Ga0501037_0024052
460 Ga0501038_0003181
461 Ga0501038_0011203
462 Ga0501039_0001639
463 Ga0501046_0006108
464 Ga0501047_0041873
465 Ga0501067_0004009
466 Ga0501070_0011853
467 Ga0501073_0014508
468 Ga0501074_0007762
469 Ga0501080_0000865
470 Ga0501083_0024940
471 Ga0501035_0004500
472 Ga0501035_0004886
473 Ga0501044_0018208
474 Ga0501044_0024696
475 nmdc:mga03683_2247_c1
476 nmdc:mga00v17_7647_c1
477 nmdc:mga07m45_93_c1
478 nmdc:mga08x19_2444_c1
479 Ga0501082_0038033
480 2512327309
481 2513673346
482 2524465359
483 2583792500
484 2588291873
485 2597869239
486 2599353021
487 2599378129
488 2599384494
489 2599459855
490 2599485174
491 2599488876
492 2599507404
493 2599944326
494 2599954798
495 2599984274
496 2599991482
497 2600001138
498 2600048927
499 2600212462
500 2600363005
501 2601772630
502 2601799065
503 2606077964
504 2606129862
505 2608382756
506 2624492266
507 2715756865
508 2743736888
509 2743737619
510 2747947926
511 2765579107
512 2776911392
513 2807407889
514 2807456192
515 2826581574
516 2834645271
517 2842821070
518 2842854197
519 2885386207
520 2904552601
521 2919478357
522 2922389490
523 2923155916
524 2923156661
525 2984289408
526 3000021272
527 3007253495
528 3007396064
529 3007422300
530 3007719953
531 8011353946
532 8015690879
533 8054352249
534 8054934682
535 8055774050
536 8056119115
537 8056123998
538 8056140192
539 8056174424
540 8057800372

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

1

622

0.98

PF00873

ACR_tran

AcrB/AcrD/AcrF family

615

1062

0.97

PF03176

MMPL

MMPL family

280

542

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
6zoe-assembly1.cif.gz_A acrb-f563a symmetric t protomer 0.9587 1 1027
8f4r-assembly1.cif.gz_C gentamicin bound aminoglycoside efflux pump acrd 0.9574 1 1024
4zjo-assembly2.cif.gz_E crystal structure of acrb triple mutant in complex with antibiotic in p21 space group 0.9562 3 1017
6iok-assembly1.cif.gz_F cryo-em structure of multidrug efflux pump mexab-oprm (0 degree state) 0.9558 1 1019
6zoc-assembly1.cif.gz_B erythromycin binding to the access pocket of acrb-g616p l protomer and 3-formylrifamycin sv binding to the access pocket of acrb-g616p t protomer 0.9555 1 1020
ID Description Score Start End Superfamily
af_P24181_41_133_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9927 41 133 3.30.70.1430
5t0oC02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9856 39 132 3.30.70.1430
af_P37637_331_506_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9836 336 508 1.20.1640.10
af_P24181_41_133_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9822 41 133 3.30.70.1430
af_P24177_305_504_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9744 308 506 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A3C1WX61-F1-model_v4 Hydrophobe/amphiphile efflux-1 family RND transporter 0.9927 367 486 GO:0005886
GO:0042910
AF-A0A379UTL3-F1-model_v4 Efflux pump 0.9769 152 354 GO:0005886
GO:0042910
AF-A0A365VNA6-F1-model_v4 deleted 0.9745 326 481
AF-A0A849T4R7-F1-model_v4 Efflux pump membrane transporter 0.9723 2 852 GO:0005886
GO:0015562
GO:0042910
AF-A0A847DUJ2-F1-model_v4 Multidrug efflux RND transporter permease subunit 0.9687 1 608 GO:0005886
GO:0042910

Map