F379834

General Info

Members Datasets Scaffolds Average Seq Length
274 196 235 404

Family's Representative Sequence

Representative Sequence 3300031595|Ga0265313_10050065|Ga0265313_100500652
Length 451
Sequence MGRRDKPGDDDFFWRDDFDPKYLHHHNKGPGRANNASGRIRMYKVIHEGGAPIKAWIEGVALEDAAKKQLVNVASLPFIHHHVAAMPDVHWGMGATVGSVIPTKGAIVPAAVGVDIGCGMVAARTSLNARDLPDNLSGARSAIEKSVPHGRTNHGGEGDRGAWHNVPDAVTELLGDFDSGDLAARLTVIADKHPKLAKPAQRAHRHLGTLGTGNHFVEICLDEAGAVWVMLHSGSRGIGNAIGQYFIEKAKEDMRRWFINLPDEDLAYLPEGSANFDDYVEAVEWAQAFAAANRSLMLAAAMRALESALGRPFDWGSVAVNCHHNYVAREHHFGANVWLTRKGAVRARLGDLGIIPGSMGAKSFIVRGLGNPDSFETCSHGAGRAMSRGEAKRRFTVADHTKATEGVECRKDADVIDETPMAYKDIDAVMAAQADLVDVVHTLRQVVCVKG

Samples

Sample ID Description Type Environment
1 2501939600 Micromonospora sp. L5 Isolate Unclassified
2 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
3 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
4 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
5 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
6 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
7 2643221593 Lysobacter sp. Root690 Isolate Unclassified
8 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
9 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
10 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
11 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
12 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
13 2855683550 Micromonospora sp. RP3T Isolate Unclassified
14 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
15 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
16 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
17 2858868258 Micromonospora sp. MH33 Isolate Unclassified
18 2858882152 Micromonospora noduli MED15 Isolate Nodule
19 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
20 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
21 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
22 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
23 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
24 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
25 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
26 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
27 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
28 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
29 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
30 2902582711 Micromonospora sp. AP08 Isolate Unclassified
31 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
32 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
33 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
34 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
35 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
36 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
37 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
38 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
39 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
40 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
41 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
42 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
43 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
44 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
45 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
46 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
47 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
48 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
49 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
50 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
51 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
52 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
53 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
54 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
55 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
56 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
57 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
58 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
59 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
60 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
61 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
62 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
63 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
64 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
65 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
66 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
67 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
68 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
69 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
70 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
71 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
72 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
73 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
74 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
75 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
76 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
77 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
78 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
79 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
80 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
81 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
82 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
83 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
84 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
85 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
86 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
87 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
88 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
89 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
105 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
106 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
110 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
111 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
112 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
113 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
114 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
115 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
116 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
117 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
118 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
119 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
120 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
121 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
122 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
123 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
124 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
125 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
126 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
127 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
128 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
129 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
130 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
131 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
132 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
133 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
134 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
135 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
136 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
137 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
138 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
139 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
140 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
141 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
142 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
143 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
144 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
145 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
146 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
147 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
148 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
149 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
150 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
151 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
153 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
154 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
155 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
157 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
158 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
159 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
160 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
161 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
162 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
163 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
164 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
165 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
166 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
167 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
168 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
169 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
170 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
171 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
172 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
173 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
174 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
175 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
176 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
177 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
178 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
179 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
180 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
181 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
182 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
183 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
184 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
185 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
186 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
187 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
188 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
189 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
190 649633069 Micromonospora sp. L5 Isolate Unclassified
191 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
192 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
193 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
194 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
195 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
196 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 85.77
Metatranscriptomes 0
Isolates 14.23

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.76
Nodule 2.19
Rhizoplane 2.55
Rhizosphere 73.36
Stem 0
Stem Tuber 0
Unclassified 13.14

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000008 3300003187 Bacteria 334180
2 Ga0055530_10010229 3300003791 Bacteria 3495
3 Ga0055531_10001795 3300003794 Bacteria 15248
4 Ga0055543_1012103 3300004625 Bacteria 1746
5 Ga0065165_1000528 3300005262 Bacteria 58452
6 Ga0070683_100278385 3300005329 Bacteria 1591
7 Ga0070670_100000102 3300005331 Bacteria 79270
8 Ga0070666_10000275 3300005335 Bacteria 34059
9 Ga0070691_10013136 3300005341 Bacteria 3793
10 Ga0070668_100022268 3300005347 Bacteria 4789
11 Ga0070668_100027286 3300005347 Bacteria 4335
12 Ga0070694_100021826 3300005444 Bacteria 4096
13 Ga0070678_100001076 3300005456 Bacteria 14299
14 Ga0070706_100023176 3300005467 Bacteria 5718
15 Ga0070698_100005800 3300005471 Bacteria 13503
16 Ga0070684_100211796 3300005535 Bacteria 1766
17 Ga0070684_100316581 3300005535 Bacteria 1433
18 Ga0068853_100021146 3300005539 Bacteria 5418
19 Ga0068853_100074131 3300005539 Bacteria 2969
20 Ga0070665_100004151 3300005548 Bacteria 15242
21 Ga0070665_100013698 3300005548 Bacteria 8159
22 Ga0070665_100042517 3300005548 Bacteria 4568
23 Ga0070665_100303403 3300005548 Bacteria 1600
24 Ga0070665_100381819 3300005548 Bacteria 1416
25 Ga0068855_100000131 3300005563 Bacteria 95330
26 Ga0068856_100010977 3300005614 Bacteria 8795
27 Ga0068852_100064060 3300005616 Bacteria 3203
28 Ga0068852_100083108 3300005616 Bacteria 2847
29 Ga0068864_100011505 3300005618 Bacteria 7309
30 Ga0068861_100150502 3300005719 Bacteria 1909
31 Ga0068863_100002162 3300005841 Bacteria 19496
32 Ga0068858_100003228 3300005842 Bacteria 16271
33 Ga0068860_100000263 3300005843 Bacteria 76895
34 Ga0068860_100030865 3300005843 Bacteria 5152
35 Ga0068862_100038731 3300005844 Bacteria 4045
36 Ga0081455_10000833 3300005937 Bacteria 39733
37 Ga0081539_10000946 3300005985 Bacteria 54425
38 Ga0075368_10002083 3300006042 Bacteria 6462
39 Ga0075363_100015773 3300006048 Bacteria 3720
40 Ga0075367_10011468 3300006178 Bacteria 4692
41 Ga0075428_100000396 3300006844 Bacteria 43116
42 Ga0075428_100002370 3300006844 Bacteria 20454
43 Ga0075428_100026813 3300006844 Bacteria 6380
44 Ga0075428_100221697 3300006844 Bacteria 2042
45 Ga0075430_100004566 3300006846 Bacteria 11653
46 Ga0075430_100036884 3300006846 Bacteria 4143
47 Ga0075431_100020835 3300006847 Bacteria 6699
48 Ga0075431_100090986 3300006847 Bacteria 3149
49 Ga0075434_100003615 3300006871 Bacteria 13799
50 Ga0075429_100028309 3300006880 Bacteria 4865
51 Ga0105240_10000400 3300009093 Bacteria 80751
52 Ga0105240_10115719 3300009093 Bacteria 3236
53 Ga0105240_10248483 3300009093 Bacteria 2059
54 Ga0111539_10001502 3300009094 Bacteria 31144
55 Ga0111539_10003426 3300009094 Bacteria 20887
56 Ga0111539_10012212 3300009094 Bacteria 10773
57 Ga0111539_10012218 3300009094 Bacteria 10770
58 Ga0111539_10016493 3300009094 Bacteria 9159
59 Ga0111539_10058542 3300009094 Bacteria 4571
60 Ga0111539_10169970 3300009094 Bacteria 2547
61 Ga0111539_10190600 3300009094 Bacteria 2392
62 Ga0114129_10037770 3300009147 Bacteria 6816
63 Ga0114129_10172138 3300009147 Bacteria 2951
64 Ga0114129_10310719 3300009147 Bacteria 2098
65 Ga0105248_10003712 3300009177 Bacteria 16932
66 Ga0105248_10030109 3300009177 Bacteria 6058
67 Ga0105238_10006489 3300009551 Bacteria 11635
68 Ga0105238_10006985 3300009551 Bacteria 11284
69 Ga0105238_10321978 3300009551 Bacteria 1532
70 Ga0105239_10002293 3300010375 Bacteria 24453
71 Ga0105239_10129492 3300010375 Bacteria 2806
72 Ga0157369_10042869 3300013105 Bacteria 4935
73 Ga0157374_10075948 3300013296 Bacteria 3176
74 Ga0157380_10002664 3300014326 Bacteria 12105
75 Ga0157379_10004601 3300014968 Bacteria 11839
76 Ga0213876_10086625 3300021384 Bacteria 1658
77 Ga0213876_10102656 3300021384 Bacteria 1516
78 Ga0213875_10001570 3300021388 Bacteria 14619
79 Ga0207425_1001808 3300025245 Bacteria 8286
80 Ga0209026_1001609 3300025250 Bacteria 9667
81 Ga0209675_1006071 3300025291 Bacteria 4929
82 Ga0209676_1001115 3300025292 Bacteria 29748
83 Ga0209676_1006904 3300025292 Bacteria 5484
84 Ga0209025_1000030 3300025294 Bacteria 441196
85 Ga0209025_1000819 3300025294 Bacteria 49669
86 Ga0209758_1006535 3300025297 Bacteria 8317
87 Ga0209758_1010823 3300025297 Bacteria 5391
88 Ga0209050_1000029 3300025298 Bacteria 465801
89 Ga0209257_1000271 3300025304 Bacteria 118632
90 Ga0209257_1003562 3300025304 Bacteria 13216
91 Ga0207684_10020624 3300025910 Bacteria 5631
92 Ga0207695_10000004 3300025913 Bacteria 1288665
93 Ga0207695_10009582 3300025913 Bacteria 11964
94 Ga0207694_10000010 3300025924 Bacteria 439722
95 Ga0207650_10000134 3300025925 Bacteria 90483
96 Ga0207711_10029284 3300025941 Bacteria 4643
97 Ga0207667_10000200 3300025949 Bacteria 86644
98 Ga0207668_10004207 3300025972 Bacteria 8437
99 Ga0207668_10055303 3300025972 Bacteria 2758
100 Ga0207658_10127923 3300025986 Bacteria 2036
101 Ga0207703_10005546 3300026035 Bacteria 10128
102 Ga0207639_10070318 3300026041 Bacteria 2734
103 Ga0207708_10077042 3300026075 Bacteria 2559
104 Ga0207702_10007631 3300026078 Bacteria 9206
105 Ga0207676_10000199 3300026095 Bacteria 52492
106 Ga0207675_100198226 3300026118 Bacteria 1928
107 Ga0207683_10005738 3300026121 Bacteria 10648
108 Ga0209813_10003822 3300027866 Bacteria 3558
109 Ga0207428_10028113 3300027907 Bacteria 4675
110 Ga0207428_10066860 3300027907 Bacteria 2831
111 Ga0207428_10091900 3300027907 Bacteria 2356
112 Ga0207428_10222647 3300027907 Bacteria 1413
113 Ga0268266_10007556 3300028379 Bacteria 9788
114 Ga0268266_10037130 3300028379 Bacteria 4150
115 Ga0268266_10042499 3300028379 Bacteria 3882
116 Ga0268265_10158102 3300028380 Bacteria 1921
117 Ga0268264_10050776 3300028381 Bacteria 3454
118 Ga0265338_10019246 3300028800 Bacteria 7261
119 Ga0265338_10036964 3300028800 Bacteria 4659
120 Ga0265338_10073881 3300028800 Viruses 2904
121 Ga0265338_10086451 3300028800 Bacteria 2609
122 Ga0307511_10005903 3300030521 Bacteria 12378
123 Ga0265325_10000982 3300031241 Bacteria 20460
124 Ga0265331_10000551 3300031250 Bacteria 33927
125 Ga0265327_10000033 3300031251 Bacteria 317182
126 Ga0265316_10097661 3300031344 Bacteria 2235
127 Ga0265313_10004433 3300031595 Bacteria 10805
128 Ga0265313_10050065 3300031595 Bacteria 2007
129 Ga0265314_10001205 3300031711 Bacteria 29703
130 Ga0265314_10004852 3300031711 Bacteria 12299
131 Ga0265342_10071941 3300031712 Bacteria 2014
132 Ga0307414_10017592 3300032004 Bacteria 4378
133 Ga0373960_0003248 3300035121 Bacteria 3679
134 Ga0373943_0007107 3300035170 Bacteria 5025
135 Ga0373942_0023723 3300035207 Bacteria 1568
136 Ga0373931_0000445 3300035691 Bacteria 16816
137 Ga0373935_0004131 3300035692 Bacteria 8493
138 Ga0373927_0004690 3300035695 Bacteria 9530
139 Ga0373947_0000231 3300035725 Bacteria 31291
140 Ga0373925_0010045 3300037068 Bacteria 6876
141 Ga0395899_0017543 3300037312 Bacteria 5453
142 Ga0395900_0004707 3300037418 Bacteria 14388
143 Ga0395900_0209886 3300037418 Bacteria 1967
144 Ga0395898_0002200 3300037466 Bacteria 23809
145 Ga0395905_0000022 3300037471 Bacteria 321527
146 Ga0395905_0133588 3300037471 Bacteria 2334
147 Ga0436364_0190742 3300037853 Bacteria 12191
148 Ga0395901_0021366 3300038443 Bacteria 6631
149 Ga0436365_1135938 3300039437 Bacteria 2587
150 Ga0436365_1916023 3300039437 Bacteria 2001
151 Ga0436363_0403506 3300039450 Bacteria 2512
152 Ga0466964_0043638 3300044706 Bacteria 1819
153 Ga0453684_0111183 3300044712 Bacteria 3329
154 Ga0466959_0044057 3300045049 Bacteria 3288
155 Ga0495603_0059591 3300046455 Bacteria 2257
156 Ga0495580_0021414 3300046472 Bacteria 4770
157 Ga0495580_0071948 3300046472 Bacteria 2415
158 Ga0495582_0026792 3300046473 Bacteria 3160
159 Ga0495662_0001998 3300046476 Bacteria 10217
160 Ga0495630_0000006 3300046517 Bacteria 400463
161 Ga0495686_0000174 3300047472 Bacteria 122221
162 Ga0495686_0017675 3300047472 Bacteria 4799
163 Ga0496104_0001676 3300048907 Bacteria 19134
164 Ga0496105_0057977 3300048908 Bacteria 3197
165 Ga0496105_0079675 3300048908 Bacteria 2705
166 Ga0496108_0009207 3300048911 Bacteria 7994
167 Ga0496109_0146778 3300048912 Bacteria 2207
168 Ga0496111_0006037 3300048914 Bacteria 7828
169 Ga0496113_0002645 3300048916 Bacteria 10494
170 Ga0496121_0000059 3300048924 Bacteria 278177
171 Ga0501031_0026486 3300049568 Bacteria 3780
172 Ga0501032_0000840 3300049569 Bacteria 24948
173 Ga0501034_0002761 3300049571 Bacteria 20617
174 Ga0501034_0063255 3300049571 Bacteria 3714
175 Ga0501036_0104386 3300049572 Bacteria 2396
176 Ga0501036_0105306 3300049572 Bacteria 2386
177 Ga0501037_0009864 3300049573 Bacteria 7008
178 Ga0501038_0217616 3300049574 Bacteria 1525
179 Ga0501038_0244089 3300049574 Bacteria 1425
180 Ga0501039_0055138 3300049575 Bacteria 3078
181 Ga0501040_0148828 3300049576 Bacteria 1651
182 Ga0501042_0008226 3300049578 Bacteria 6875
183 Ga0501043_0137897 3300049579 Bacteria 1911
184 Ga0501047_0047033 3300049581 Bacteria 4169
185 Ga0501047_0082489 3300049581 Bacteria 3090
186 Ga0501048_0042947 3300049582 Bacteria 3236
187 Ga0501067_0001539 3300049583 Bacteria 12566
188 Ga0501067_0036153 3300049583 Bacteria 2743
189 Ga0501068_0003168 3300049584 Bacteria 8806
190 Ga0501072_0031479 3300049588 Bacteria 4153
191 Ga0501073_0000003 3300049589 Bacteria 294975
192 Ga0501073_0003998 3300049589 Bacteria 11070
193 Ga0501073_0085181 3300049589 Bacteria 2199
194 Ga0501074_0045966 3300049590 Bacteria 3157
195 Ga0501077_0000016 3300049593 Bacteria 88500
196 Ga0501227_002623 3300049665 Bacteria 3941
197 Ga0501257_000671 3300049686 Bacteria 6834
198 Ga0501225_0004534 3300049705 Bacteria 4131
199 Ga0501079_0290204 3300049741 Bacteria 1279
200 Ga0501080_0002190 3300049742 Bacteria 16979
201 Ga0501080_0005418 3300049742 Bacteria 11383
202 Ga0501080_0050895 3300049742 Bacteria 3854
203 Ga0501080_0110749 3300049742 Bacteria 2544
204 Ga0501083_0072262 3300049744 Bacteria 2293
205 Ga0501083_0182746 3300049744 Bacteria 1369
206 Ga0501262_001159 3300049759 Bacteria 2987
207 Ga0501280_004210 3300049776 Bacteria 2130
208 Ga0501044_0005783 3300049823 Bacteria 13690
209 Ga0501044_0059181 3300049823 Bacteria 3926
210 Ga0501044_0078824 3300049823 Bacteria 3338
211 Ga0501044_0079504 3300049823 Bacteria 3323
212 Ga0501045_0038388 3300049824 Bacteria 3483
213 nmdc:mga06z11_16641_c1 3300050494 Bacteria 3317
214 nmdc:mga06z11_870_c1 3300050494 Bacteria 11020
215 nmdc:mga04h51_5005_c1 3300050495 Bacteria 3346
216 nmdc:mga05p37_275537_c1 3300050507 Bacteria 2009
217 nmdc:mga05p37_314793_c1 3300050507 Bacteria 1854
218 nmdc:mga09592_196955_c1 3300050508 Bacteria 1744
219 nmdc:mga09592_294050_c1 3300050508 Bacteria 1408
220 nmdc:mga0qj67_266_c1 3300050509 Bacteria 35948
221 nmdc:mga0qj67_66876_c1 3300050509 Bacteria 2863
222 nmdc:mga0qj67_78353_c1 3300050509 Bacteria 2645
223 nmdc:mga06r32_33222_c1 3300050510 Bacteria 4859
224 nmdc:mga06r32_39527_c1 3300050510 Bacteria 4477
225 nmdc:mga06r32_48943_c1 3300050510 Bacteria 4043
226 nmdc:mga06r32_98765_c1 3300050510 Bacteria 2862
227 nmdc:mga08y16_13707_c1 3300050511 Bacteria 8534
228 nmdc:mga08y16_2039_c1 3300050511 Bacteria 20711
229 nmdc:mga08y16_28540_c1 3300050511 Bacteria 5882
230 nmdc:mga0n895_24178_c1 3300050512 Bacteria 5724
231 nmdc:mga0a205_4907_c1 3300050515 Bacteria 12029
232 Ga0500595_014974 3300053119 Bacteria 2926
233 Ga0501082_0036820 3300060353 Bacteria 4215
234 Ga0501082_0045851 3300060353 Bacteria 3769
235 Ga0501082_0089689 3300060353 Bacteria 2655

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300028379 Ga0268266_10007556 Ga0268266_100075567 338
2 3300049574 Ga0501038_0244089 Ga0501038_0244089_12_1079 346
3 3300006846 Ga0075430_100004566 Ga0075430_10000456614 364
4 3300050509 nmdc:mga0qj67_266_c1 nmdc:mga0qj67_266_c1_5607_6809 364
5 3300005616 Ga0068852_100064060 Ga0068852_1000640602 373
6 3300005539 Ga0068853_100074131 Ga0068853_1000741312 376
7 3300047472 Ga0495686_0017675 Ga0495686_0017675_1397_2623 377
8 3300030521 Ga0307511_10005903 Ga0307511_1000590312 378
9 3300053119 Ga0500595_014974 Ga0500595_014974_1261_2478 378
10 3300025250 Ga0209026_1001609 Ga0209026_10016095 379
11 3300025304 Ga0209257_1003562 Ga0209257_100356212 379
12 3300028800 Ga0265338_10073881 Ga0265338_100738813 380
13 iso_pu_bacteria 2515154088 2515493976 380
14 iso_pu_bacteria 2515154137 2515759887 380
15 iso_pu_bacteria 2515154202 2516086443 380
16 iso_pu_bacteria 2515154203 2516089873 380
17 iso_pu_bacteria 2622736626 2623589585 380
18 iso_pu_bacteria 2772190715 2772647408 380
19 iso_pu_bacteria 2831935698 2831937038 380
20 iso_pu_bacteria 2832004796 2832009067 380
21 iso_pu_bacteria 2855670206 2855673219 380
22 iso_pu_bacteria 2855676851 2855681017 380
23 iso_pu_bacteria 2855683550 2855685664 380
24 iso_pu_bacteria 2856858025 2856863085 380
25 iso_pu_bacteria 2857288857 2857293589 380
26 iso_pu_bacteria 2858848962 2858851396 380
27 iso_pu_bacteria 2858868258 2858870935 380
28 iso_pu_bacteria 2858882152 2858887648 380
29 iso_pu_bacteria 2858888857 2858892768 380
30 iso_pu_bacteria 2858895516 2858896983 380
31 iso_pu_bacteria 2858902515 2858906014 380
32 iso_pu_bacteria 2867302475 2867307419 380
33 iso_pu_bacteria 2867312974 2867318059 380
34 iso_pu_bacteria 2867319477 2867324248 380
35 iso_pu_bacteria 2869048445 2869051823 380
36 iso_pu_bacteria 2869061728 2869067028 380
37 iso_pu_bacteria 2869068681 2869070215 380
38 iso_pu_bacteria 2880489317 2880491687 380
39 iso_pu_bacteria 2880495981 2880500656 380
40 iso_pu_bacteria 2902582711 2902583181 380
41 iso_pu_bacteria 2929219909 2929222848 380
42 iso_pu_bacteria 2929226422 2929229148 380
43 iso_pu_bacteria 649633069 649815143 380
44 iso_pu_bacteria 8003856774 8003860501 380
45 iso_pu_bacteria 8003870546 8003874862 380
46 iso_pu_bacteria 8054704163 8054709254 380
47 iso_pu_bacteria 8054727385 8054729051 380
48 iso_pu_bacteria 8054734606 8054738100 380
49 iso_pu_bacteria 8055412473 8055413009 380
50 3300009551 Ga0105238_10006985 Ga0105238_100069852 381
51 3300046476 Ga0495662_0001998 Ga0495662_0001998_1359_2600 381
52 3300046517 Ga0495630_0000006 Ga0495630_0000006_111733_112974 381
53 3300005937 Ga0081455_10000833 Ga0081455_1000083326 382
54 3300028800 Ga0265338_10036964 Ga0265338_100369643 382
55 3300005985 Ga0081539_10000946 Ga0081539_1000094640 384
56 3300009094 Ga0111539_10058542 Ga0111539_100585422 384
57 3300037853 Ga0436364_0190742 Ga0436364_0190742_3362_4558 384
58 3300006844 Ga0075428_100026813 Ga0075428_1000268132 385
59 3300006844 Ga0075428_100221697 Ga0075428_1002216973 385
60 3300006846 Ga0075430_100036884 Ga0075430_1000368844 385
61 3300006847 Ga0075431_100090986 Ga0075431_1000909862 385
62 3300006880 Ga0075429_100028309 Ga0075429_1000283092 385
63 3300009147 Ga0114129_10037770 Ga0114129_100377706 385
64 3300050508 nmdc:mga09592_196955_c1 nmdc:mga09592_196955_c1_58_1260 385
65 3300050509 nmdc:mga0qj67_66876_c1 nmdc:mga0qj67_66876_c1_252_1457 385
66 3300050510 nmdc:mga06r32_39527_c1 nmdc:mga06r32_39527_c1_1134_2339 385
67 3300050510 nmdc:mga06r32_98765_c1 nmdc:mga06r32_98765_c1_1490_2692 385
68 iso_pu_bacteria 2501939600 2501945616 385
69 3300049742 Ga0501080_0005418 Ga0501080_0005418_908_2116 386
70 3300060353 Ga0501082_0045851 Ga0501082_0045851_1727_2935 386
71 3300005548 Ga0070665_100381819 Ga0070665_1003818191 387
72 3300005614 Ga0068856_100010977 Ga0068856_1000109774 387
73 3300025913 Ga0207695_10009582 Ga0207695_1000958220 387
74 3300026078 Ga0207702_10007631 Ga0207702_100076314 387
75 3300046472 Ga0495580_0071948 Ga0495580_0071948_374_1603 387
76 3300005843 Ga0068860_100030865 Ga0068860_1000308652 388
77 3300028381 Ga0268264_10050776 Ga0268264_100507767 388
78 3300009093 Ga0105240_10115719 Ga0105240_101157195 389
79 3300021388 Ga0213875_10001570 Ga0213875_100015708 389
80 3300032004 Ga0307414_10017592 Ga0307414_100175923 389
81 3300048912 Ga0496109_0146778 Ga0496109_0146778_153_1349 389
82 3300005331 Ga0070670_100000102 Ga0070670_10000010268 390
83 3300005347 Ga0070668_100022268 Ga0070668_1000222682 390
84 3300005347 Ga0070668_100027286 Ga0070668_1000272861 390
85 3300005548 Ga0070665_100004151 Ga0070665_1000041516 390
86 3300005548 Ga0070665_100303403 Ga0070665_1003034032 390
87 3300005618 Ga0068864_100011505 Ga0068864_1000115055 390
88 3300005841 Ga0068863_100002162 Ga0068863_1000021625 390
89 3300005842 Ga0068858_100003228 Ga0068858_10000322811 390
90 3300005843 Ga0068860_100000263 Ga0068860_10000026365 390
91 3300009177 Ga0105248_10030109 Ga0105248_100301094 390
92 3300014968 Ga0157379_10004601 Ga0157379_100046016 390
93 3300021384 Ga0213876_10102656 Ga0213876_101026562 390
94 3300025925 Ga0207650_10000134 Ga0207650_1000013456 390
95 3300025972 Ga0207668_10004207 Ga0207668_100042076 390
96 3300025972 Ga0207668_10055303 Ga0207668_100553032 390
97 3300026035 Ga0207703_10005546 Ga0207703_100055467 390
98 3300026095 Ga0207676_10000199 Ga0207676_1000019933 390
99 3300028380 Ga0268265_10158102 Ga0268265_101581022 390
100 3300039437 Ga0436365_1916023 Ga0436365_1916023_707_1924 390
101 3300048924 Ga0496121_0000059 Ga0496121_0000059_189198_190424 390
102 3300049589 Ga0501073_0085181 Ga0501073_0085181_919_2139 390
103 3300049744 Ga0501083_0072262 Ga0501083_0072262_1052_2272 390
104 3300049686 Ga0501257_000671 Ga0501257_000671_2924_4138 391
105 3300049776 Ga0501280_004210 Ga0501280_004210_423_1637 391
106 3300009094 Ga0111539_10003426 Ga0111539_100034262 393
107 3300050511 nmdc:mga08y16_28540_c1 nmdc:mga08y16_28540_c1_4343_5572 393
108 3300049823 Ga0501044_0079504 Ga0501044_0079504_2006_3211 394
109 3300005329 Ga0070683_100278385 Ga0070683_1002783852 395
110 3300009094 Ga0111539_10012212 Ga0111539_100122129 395
111 3300031711 Ga0265314_10004852 Ga0265314_1000485211 395
112 3300037312 Ga0395899_0017543 Ga0395899_0017543_2842_4068 395
113 3300037418 Ga0395900_0004707 Ga0395900_0004707_8363_9589 395
114 3300037466 Ga0395898_0002200 Ga0395898_0002200_20917_22143 395
115 3300037471 Ga0395905_0000022 Ga0395905_0000022_162189_163415 395
116 3300038443 Ga0395901_0021366 Ga0395901_0021366_1386_2612 395
117 3300050512 nmdc:mga0n895_24178_c1 nmdc:mga0n895_24178_c1_4357_5550 395
118 3300050515 nmdc:mga0a205_4907_c1 nmdc:mga0a205_4907_c1_9138_10331 395
119 3300005456 Ga0070678_100001076 Ga0070678_10000107610 396
120 3300006048 Ga0075363_100015773 Ga0075363_1000157734 396
121 3300009094 Ga0111539_10016493 Ga0111539_100164939 396
122 3300013105 Ga0157369_10042869 Ga0157369_100428693 396
123 3300013296 Ga0157374_10075948 Ga0157374_100759482 396
124 3300014326 Ga0157380_10002664 Ga0157380_1000266411 396
125 3300025941 Ga0207711_10029284 Ga0207711_100292842 396
126 3300025986 Ga0207658_10127923 Ga0207658_101279232 396
127 3300026121 Ga0207683_10005738 Ga0207683_1000573810 396
128 3300028800 Ga0265338_10086451 Ga0265338_100864512 396
129 3300035170 Ga0373943_0007107 Ga0373943_0007107_1768_2991 396
130 3300035692 Ga0373935_0004131 Ga0373935_0004131_230_1453 396
131 3300035695 Ga0373927_0004690 Ga0373927_0004690_2493_3716 396
132 3300035725 Ga0373947_0000231 Ga0373947_0000231_575_1798 396
133 3300037068 Ga0373925_0010045 Ga0373925_0010045_564_1787 396
134 3300037418 Ga0395900_0209886 Ga0395900_0209886_134_1345 396
135 3300046472 Ga0495580_0021414 Ga0495580_0021414_3330_4553 396
136 3300046473 Ga0495582_0026792 Ga0495582_0026792_1456_2679 396
137 3300049568 Ga0501031_0026486 Ga0501031_0026486_1591_2820 396
138 3300049571 Ga0501034_0063255 Ga0501034_0063255_1413_2624 396
139 3300049572 Ga0501036_0104386 Ga0501036_0104386_809_2038 396
140 3300049572 Ga0501036_0105306 Ga0501036_0105306_865_2076 396
141 3300049575 Ga0501039_0055138 Ga0501039_0055138_1003_2232 396
142 3300049576 Ga0501040_0148828 Ga0501040_0148828_359_1588 396
143 3300049578 Ga0501042_0008226 Ga0501042_0008226_3456_4685 396
144 3300049581 Ga0501047_0047033 Ga0501047_0047033_1821_3032 396
145 3300049581 Ga0501047_0082489 Ga0501047_0082489_1110_2321 396
146 3300049582 Ga0501048_0042947 Ga0501048_0042947_1449_2678 396
147 3300049588 Ga0501072_0031479 Ga0501072_0031479_1314_2543 396
148 3300049742 Ga0501080_0050895 Ga0501080_0050895_643_1872 396
149 3300049823 Ga0501044_0059181 Ga0501044_0059181_1890_3101 396
150 3300049824 Ga0501045_0038388 Ga0501045_0038388_273_1502 396
151 3300060353 Ga0501082_0036820 Ga0501082_0036820_1320_2549 396
152 3300005467 Ga0070706_100023176 Ga0070706_1000231767 397
153 3300005471 Ga0070698_100005800 Ga0070698_10000580012 397
154 3300005539 Ga0068853_100021146 Ga0068853_1000211464 397
155 3300005548 Ga0070665_100013698 Ga0070665_1000136984 397
156 3300005548 Ga0070665_100042517 Ga0070665_1000425172 397
157 3300005563 Ga0068855_100000131 Ga0068855_100000131104 397
158 3300005616 Ga0068852_100083108 Ga0068852_1000831082 397
159 3300006844 Ga0075428_100000396 Ga0075428_10000039610 397
160 3300009093 Ga0105240_10000400 Ga0105240_100004002 397
161 3300009094 Ga0111539_10001502 Ga0111539_1000150220 397
162 3300009551 Ga0105238_10006489 Ga0105238_100064893 397
163 3300009551 Ga0105238_10321978 Ga0105238_103219781 397
164 3300010375 Ga0105239_10002293 Ga0105239_1000229323 397
165 3300010375 Ga0105239_10129492 Ga0105239_101294924 397
166 3300021384 Ga0213876_10086625 Ga0213876_100866252 397
167 3300025910 Ga0207684_10020624 Ga0207684_100206247 397
168 3300025913 Ga0207695_10000004 Ga0207695_100000041193 397
169 3300025924 Ga0207694_10000010 Ga0207694_10000010234 397
170 3300025949 Ga0207667_10000200 Ga0207667_100002008 397
171 3300026041 Ga0207639_10070318 Ga0207639_100703182 397
172 3300027907 Ga0207428_10028113 Ga0207428_100281132 397
173 3300028379 Ga0268266_10037130 Ga0268266_100371304 397
174 3300028379 Ga0268266_10042499 Ga0268266_100424992 397
175 3300031250 Ga0265331_10000551 Ga0265331_1000055116 397
176 3300031251 Ga0265327_10000033 Ga0265327_10000033124 397
177 3300031711 Ga0265314_10001205 Ga0265314_100012053 397
178 3300031712 Ga0265342_10071941 Ga0265342_100719411 397
179 3300037471 Ga0395905_0133588 Ga0395905_0133588_377_1591 397
180 3300039437 Ga0436365_1135938 Ga0436365_1135938_1056_2270 397
181 3300039450 Ga0436363_0403506 Ga0436363_0403506_876_2090 397
182 3300044712 Ga0453684_0111183 Ga0453684_0111183_194_1408 397
183 3300046455 Ga0495603_0059591 Ga0495603_0059591_841_2061 397
184 3300049571 Ga0501034_0002761 Ga0501034_0002761_8015_9250 397
185 3300049590 Ga0501074_0045966 Ga0501074_0045966_523_1755 397
186 3300049741 Ga0501079_0290204 Ga0501079_0290204_10_1242 397
187 3300049742 Ga0501080_0110749 Ga0501080_0110749_159_1391 397
188 3300049823 Ga0501044_0078824 Ga0501044_0078824_465_1697 397
189 3300050511 nmdc:mga08y16_2039_c1 nmdc:mga08y16_2039_c1_3192_4412 397
190 3300005535 Ga0070684_100316581 Ga0070684_1003165812 398
191 3300009177 Ga0105248_10003712 Ga0105248_1000371215 398
192 3300028800 Ga0265338_10019246 Ga0265338_100192465 398
193 3300044706 Ga0466964_0043638 Ga0466964_0043638_584_1789 398
194 3300048908 Ga0496105_0057977 Ga0496105_0057977_1102_2331 398
195 3300049583 Ga0501067_0036153 Ga0501067_0036153_1352_2596 398
196 3300049665 Ga0501227_002623 Ga0501227_002623_1592_2809 398
197 3300049705 Ga0501225_0004534 Ga0501225_0004534_1697_2914 398
198 3300005341 Ga0070691_10013136 Ga0070691_100131361 399
199 3300009093 Ga0105240_10248483 Ga0105240_102484832 399
200 3300049759 Ga0501262_001159 Ga0501262_001159_879_2138 399
201 3300003791 Ga0055530_10010229 Ga0055530_100102294 400
202 3300003794 Ga0055531_10001795 Ga0055531_100017954 400
203 3300004625 Ga0055543_1012103 Ga0055543_10121032 400
204 3300005262 Ga0065165_1000528 Ga0065165_100052835 400
205 3300005335 Ga0070666_10000275 Ga0070666_1000027521 400
206 3300025297 Ga0209758_1006535 Ga0209758_100653510 400
207 3300025298 Ga0209050_1000029 Ga0209050_100002982 400
208 3300025304 Ga0209257_1000271 Ga0209257_100027138 400
209 3300045049 Ga0466959_0044057 Ga0466959_0044057_407_1762 400
210 3300005535 Ga0070684_100211796 Ga0070684_1002117963 401
211 3300031241 Ga0265325_10000982 Ga0265325_1000098215 401
212 3300031344 Ga0265316_10097661 Ga0265316_100976612 401
213 3300031595 Ga0265313_10004433 Ga0265313_100044333 401
214 3300031595 Ga0265313_10050065 Ga0265313_100500652 401
215 3300005444 Ga0070694_100021826 Ga0070694_1000218265 402
216 3300005719 Ga0068861_100150502 Ga0068861_1001505023 402
217 3300005844 Ga0068862_100038731 Ga0068862_1000387313 402
218 3300006042 Ga0075368_10002083 Ga0075368_100020835 402
219 3300006178 Ga0075367_10011468 Ga0075367_100114685 402
220 3300006844 Ga0075428_100002370 Ga0075428_10000237014 402
221 3300006847 Ga0075431_100020835 Ga0075431_1000208356 402
222 3300006871 Ga0075434_100003615 Ga0075434_1000036156 402
223 3300009094 Ga0111539_10012218 Ga0111539_100122189 402
224 3300009094 Ga0111539_10169970 Ga0111539_101699703 402
225 3300009094 Ga0111539_10190600 Ga0111539_101906002 402
226 3300009147 Ga0114129_10172138 Ga0114129_101721383 402
227 3300009147 Ga0114129_10310719 Ga0114129_103107192 402
228 3300026075 Ga0207708_10077042 Ga0207708_100770423 402
229 3300026118 Ga0207675_100198226 Ga0207675_1001982263 402
230 3300027866 Ga0209813_10003822 Ga0209813_100038224 402
231 3300027907 Ga0207428_10066860 Ga0207428_100668602 402
232 3300027907 Ga0207428_10091900 Ga0207428_100919002 402
233 3300027907 Ga0207428_10222647 Ga0207428_102226471 402
234 3300035121 Ga0373960_0003248 Ga0373960_0003248_495_1709 402
235 3300035207 Ga0373942_0023723 Ga0373942_0023723_331_1545 402
236 3300035691 Ga0373931_0000445 Ga0373931_0000445_5926_7140 402
237 3300050494 nmdc:mga06z11_16641_c1 nmdc:mga06z11_16641_c1_881_2095 402
238 3300050494 nmdc:mga06z11_870_c1 nmdc:mga06z11_870_c1_8436_9650 402
239 3300050495 nmdc:mga04h51_5005_c1 nmdc:mga04h51_5005_c1_1210_2424 402
240 3300050507 nmdc:mga05p37_275537_c1 nmdc:mga05p37_275537_c1_362_1576 402
241 3300050507 nmdc:mga05p37_314793_c1 nmdc:mga05p37_314793_c1_321_1535 402
242 3300050508 nmdc:mga09592_294050_c1 nmdc:mga09592_294050_c1_116_1330 402
243 3300050509 nmdc:mga0qj67_78353_c1 nmdc:mga0qj67_78353_c1_321_1535 402
244 3300050510 nmdc:mga06r32_33222_c1 nmdc:mga06r32_33222_c1_752_1966 402
245 3300050510 nmdc:mga06r32_48943_c1 nmdc:mga06r32_48943_c1_2075_3289 402
246 3300050511 nmdc:mga08y16_13707_c1 nmdc:mga08y16_13707_c1_3509_4723 402
247 iso_pu_bacteria 2643221593 2643977369 402
248 3300047472 Ga0495686_0000174 Ga0495686_0000174_44339_45550 403
249 3300049574 Ga0501038_0217616 Ga0501038_0217616_188_1399 403
250 3300049579 Ga0501043_0137897 Ga0501043_0137897_85_1296 403
251 3300049589 Ga0501073_0003998 Ga0501073_0003998_9640_10851 403
252 3300049593 Ga0501077_0000016 Ga0501077_0000016_59_1270 403
253 3300049742 Ga0501080_0002190 Ga0501080_0002190_15684_16895 403
254 3300048907 Ga0496104_0001676 Ga0496104_0001676_12983_14296 404
255 3300048908 Ga0496105_0079675 Ga0496105_0079675_503_1816 404
256 3300048911 Ga0496108_0009207 Ga0496108_0009207_3306_4619 404
257 3300048914 Ga0496111_0006037 Ga0496111_0006037_4417_5730 404
258 3300048916 Ga0496113_0002645 Ga0496113_0002645_4841_6154 404
259 3300049569 Ga0501032_0000840 Ga0501032_0000840_3520_4836 405
260 3300049573 Ga0501037_0009864 Ga0501037_0009864_5558_6874 405
261 3300049583 Ga0501067_0001539 Ga0501067_0001539_4659_5975 405
262 3300049584 Ga0501068_0003168 Ga0501068_0003168_405_1721 405
263 3300049589 Ga0501073_0000003 Ga0501073_0000003_20057_21373 405
264 3300049744 Ga0501083_0182746 Ga0501083_0182746_16_1332 405
265 3300049823 Ga0501044_0005783 Ga0501044_0005783_9076_10392 405
266 3300060353 Ga0501082_0089689 Ga0501082_0089689_1181_2497 405
267 3300003187 JGI25151J46595_10000008 JGI25151J46595_10000008259 406
268 3300025245 Ga0207425_1001808 Ga0207425_100180810 406
269 3300025291 Ga0209675_1006071 Ga0209675_10060716 406
270 3300025292 Ga0209676_1001115 Ga0209676_10011157 406
271 3300025292 Ga0209676_1006904 Ga0209676_10069043 406
272 3300025294 Ga0209025_1000030 Ga0209025_1000030254 406
273 3300025294 Ga0209025_1000819 Ga0209025_100081927 406
274 3300025297 Ga0209758_1010823 Ga0209758_10108231 406

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01139

RtcB

tRNA-splicing ligase RtcB

69

451

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
8dcb-assembly2.cif.gz_B rna ligase rtcb from pyrococcus horikoshii in complex with ni2+ and gtp 0.8401 12 406
4dwr-assembly3.cif.gz_C rna ligase rtcb/mn2+ complex 0.8291 12 406
7p3b-assembly2.cif.gz_B human rna ligase rtcb in complex with gmp and co(ii) 0.8186 31 406
8dcb-assembly2.cif.gz_B rna ligase rtcb from pyrococcus horikoshii in complex with ni2+ and gtp 0.8169 12 406
4dwr-assembly3.cif.gz_C rna ligase rtcb/mn2+ complex 0.8067 12 406
ID Description Score Start End Superfamily
af_Q4DZR4_37_449_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.9441 11 406 3.90.1860.10
af_A4I8R9_1_351_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.9359 86 406 3.90.1860.10
af_Q8I5J3_323_568_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.9307 186 406 3.90.1860.10
af_Q4DZR4_37_449_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.9192 11 406 3.90.1860.10
af_A4I8R9_1_351_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.8552 86 406 3.90.1860.10
ID Description Score Start End GO Terms
AF-A0A031I1N1-F1-model_v4 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) 0.9965 308 406 GO:0003909
GO:0005525
GO:0006281
GO:0006396
GO:0030145
GO:0042245
GO:0170057
AF-A0A356KJ43-F1-model_v4 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) 0.9941 275 406 GO:0003909
GO:0005525
GO:0006281
GO:0006396
GO:0030145
GO:0042245
GO:0170057
AF-K2BJP9-F1-model_v4 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) 0.9933 287 406 GO:0003909
GO:0005525
GO:0006281
GO:0006396
GO:0030145
GO:0042245
GO:0170057
AF-A0A2H4TTX8-F1-model_v4 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) 0.9914 283 406 GO:0003909
GO:0005525
GO:0006281
GO:0006396
GO:0030145
GO:0042245
GO:0170057
AF-A0A379CUX5-F1-model_v4 deleted 0.991 314 406

Feature Viewer

pLDDT pTM Quality
92.06 0.9 High
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Predicted Structure (AlphaFold2)

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