F379841

General Info

Members Datasets Scaffolds Average Seq Length
274 183 548 310

Family's Representative Sequence

Representative Sequence 3300031731|Ga0307405_10014003|Ga0307405_100140032
Length 358
Sequence VSRPRRVVPRMLAPSRILRTTPAQAGGGRERWSLVEHAYDAIAEGSKSFATASELFDRATRERVWLLYAWCRRCDDLADGQDHGGEPGDHADTDKRLRAIRLLTERAFEGLPTADPAFDAFGLVARECGLTREMAEDVIMGFELDAAGWRPRTERDLARYCYHVAGAVGVMMAVVMGVPKDDSETLDRACDLGIAFQLANIARDIGEDDAADRCYLPVEWLVEEDIEPGQHMKPHHRGELADMAARLVALMERHEAAAKLGTTRLSFRSRWAVLAAARIYGAIGREVRARGRAAWDHRVVIWRWNKAKHVLAAFWEALRNRPQPPEAMPEWTRGEILIDVRMAGPIAKPPMDPLPDEE

Samples

Sample ID Description Type Environment
1 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300002077 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3 Metagenome Rhizosphere
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
10 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
11 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
12 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
13 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
14 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
15 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
16 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
17 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
18 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
19 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
20 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
21 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
22 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
23 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
24 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
25 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
28 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
31 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
32 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
33 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
34 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
35 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
37 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
38 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
42 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
46 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
47 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
48 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
49 3300022739 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules Metagenome Nodule
50 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
51 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
57 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
80 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
81 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
82 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
83 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
84 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
85 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
86 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
87 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
88 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
89 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
90 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
91 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
92 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
93 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
94 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
95 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
96 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
97 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
98 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
99 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
100 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
101 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
102 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
103 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
104 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
105 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
106 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
107 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
108 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
109 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
110 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
111 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
112 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
113 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
114 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
115 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
116 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
117 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
118 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
119 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
120 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
121 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
122 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
123 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
124 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
125 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
126 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
127 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
128 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
129 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
130 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
131 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
132 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
133 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
134 3300049517 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_B_5_control Metagenome Rhizosphere
135 3300049523 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control Metagenome Rhizosphere
136 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
140 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
141 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
142 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
143 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
144 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
145 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
146 3300049708 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_A_3_control Metagenome Rhizosphere
147 3300049775 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_A_5_drought Metagenome Rhizosphere
148 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
149 3300049777 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_A_5_control Metagenome Rhizosphere
150 3300049778 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_A_5_control Metagenome Rhizosphere
151 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
152 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
153 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
154 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
155 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
156 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
157 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
158 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
159 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
160 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
161 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
162 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
163 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
164 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
165 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
166 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
167 2517487022 Sinorhizobium medicae WSM4191 Isolate Nodule
168 2643221560 Sphingopyxis sp. Root1497 Isolate Unclassified
169 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
170 2643221588 Altererythrobacter sp. Root672 Isolate Unclassified
171 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
172 2643221622 Sphingomonas sp. Root241 Isolate Unclassified
173 2802428859 Sinorhizobium medicae SF3.41 Isolate Nodule
174 2837678835 Jiella endophytica CBS5Q-3 Isolate Unclassified
175 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
176 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere
177 2882806704 Pelagerythrobacter rhizovicinus AY-3R Isolate Rhizosphere
178 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
179 2896429255 Sphingomonas rhizophila KACC 19189 Isolate Rhizosphere
180 2970026789 Sinorhizobium medicae USDA1611 Isolate Nodule
181 3000865235 Altericroceibacterium indicum DSM 18604 Isolate Rhizosphere
182 8045864390 Aurantimonas endophytica KCTC 52296 Isolate Unclassified
183 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.8
Metatranscriptomes 0
Isolates 6.2

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.34
Nodule 2.19
Rhizoplane 1.46
Rhizosphere 70.07
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307405_10014003 3300031731 Bacteria 4298
2 JGI24739J22299_10049945 3300001989 Bacteria 1355
3 JGI24735J21928_10026377 3300002067 Bacteria 1747
4 JGI24744J21845_10001513 3300002077 Bacteria 4627
5 JGI25153J46596_10009247 3300003215 Bacteria 4610
6 rootH1_10014585 3300003316 Bacteria 8260
7 rootH1_10160980 3300003316 Bacteria 1684
8 rootH2_10172597 3300003320 Bacteria 2093
9 rootL2_10092438 3300003322 Bacteria 3148
10 Ga0055537_1002195 3300003773 Bacteria 6800
11 Ga0055524_1000210 3300003775 Bacteria 62927
12 Ga0055536_1003782 3300003781 Bacteria 7987
13 Ga0055536_1003805 3300003781 Bacteria 7956
14 Ga0055530_10000116 3300003791 Bacteria 69428
15 Ga0055530_10020549 3300003791 Bacteria 1970
16 Ga0055531_10004300 3300003794 Bacteria 8731
17 Ga0055531_10004873 3300003794 Bacteria 7998
18 Ga0055531_10013919 3300003794 Bacteria 3668
19 Ga0055531_10032084 3300003794 Bacteria 1724
20 Ga0065165_1002232 3300005262 Bacteria 17225
21 Ga0065707_10082279 3300005295 Bacteria 17547
22 Ga0070658_10006100 3300005327 Bacteria 9772
23 Ga0070658_10129934 3300005327 Bacteria 2099
24 Ga0070658_10132766 3300005327 Bacteria 2075
25 Ga0070658_10136965 3300005327 Bacteria 2043
26 Ga0070670_100037032 3300005331 Bacteria 4197
27 Ga0070680_100000253 3300005336 Bacteria 35261
28 Ga0070682_100147559 3300005337 Bacteria 1610
29 Ga0070660_100001148 3300005339 Bacteria 17873
30 Ga0070661_100000009 3300005344 Bacteria 181351
31 Ga0070661_100133192 3300005344 Bacteria 1868
32 Ga0070659_100005406 3300005366 Bacteria 9172
33 Ga0070700_100192926 3300005441 Bacteria 1425
34 Ga0070708_100329268 3300005445 Bacteria 1439
35 Ga0070663_100011855 3300005455 Bacteria 5494
36 Ga0070679_100000015 3300005530 Bacteria 142672
37 Ga0068853_100042096 3300005539 Bacteria 3904
38 Ga0068853_100077248 3300005539 Bacteria 2909
39 Ga0068853_100364501 3300005539 Bacteria 1347
40 Ga0070672_100044412 3300005543 Bacteria 3432
41 Ga0070665_100068338 3300005548 Bacteria 3563
42 Ga0070665_100430639 3300005548 Bacteria 1328
43 Ga0068855_100266263 3300005563 Bacteria 1907
44 Ga0070664_100064508 3300005564 Bacteria 3124
45 Ga0068854_100000419 3300005578 Bacteria 26489
46 Ga0068854_100013239 3300005578 Bacteria 5407
47 Ga0068852_100098620 3300005616 Bacteria 2632
48 Ga0075363_100004877 3300006048 Bacteria 5927
49 Ga0097621_100022019 3300006237 Bacteria 4942
50 Ga0075370_10031896 3300006353 Bacteria 2943
51 Ga0068871_100066642 3300006358 Bacteria 2952
52 Ga0079104_1014405 3300006946 Bacteria 2386
53 Ga0105238_10233496 3300009551 Bacteria 1816
54 Ga0105239_10007000 3300010375 Bacteria 12978
55 Ga0157373_10027739 3300013100 Bacteria 4085
56 Ga0157373_10193126 3300013100 Bacteria 1434
57 Ga0157371_10013348 3300013102 Bacteria 6244
58 Ga0157371_10229095 3300013102 Bacteria 1335
59 Ga0157369_10383166 3300013105 Bacteria 1459
60 Ga0157374_10015908 3300013296 Bacteria 6609
61 Ga0157372_10011211 3300013307 Bacteria 9537
62 Ga0157372_10122868 3300013307 Bacteria 2984
63 Ga0157380_10012764 3300014326 Bacteria 6103
64 Ga0157380_10148403 3300014326 Bacteria 2024
65 Ga0213873_10000009 3300021358 Bacteria 237102
66 Ga0213876_10000004 3300021384 Bacteria 943822
67 Ga0228711_1013421 3300022739 Bacteria 9633
68 Ga0228710_1002821 3300022740 Bacteria 27611
69 Ga0209148_1001582 3300025254 Bacteria 10766
70 Ga0209565_1000029 3300025263 Bacteria 340335
71 Ga0209673_1000754 3300025273 Bacteria 44111
72 Ga0209675_1000697 3300025291 Bacteria 23309
73 Ga0209675_1003172 3300025291 Bacteria 7986
74 Ga0209676_1000273 3300025292 Bacteria 107724
75 Ga0209676_1000402 3300025292 Bacteria 78796
76 Ga0209676_1001476 3300025292 Bacteria 21761
77 Ga0209758_1001653 3300025297 Bacteria 25273
78 Ga0209050_1000218 3300025298 Bacteria 128776
79 Ga0209050_1009212 3300025298 Bacteria 5097
80 Ga0209050_1042789 3300025298 Bacteria 1232
81 Ga0209256_1000008 3300025299 Bacteria 975723
82 Ga0209257_1000248 3300025304 Bacteria 125170
83 Ga0209257_1000435 3300025304 Bacteria 80311
84 Ga0209257_1005585 3300025304 Bacteria 8732
85 Ga0209257_1018037 3300025304 Bacteria 2740
86 Ga0207705_10012593 3300025909 Bacteria 6105
87 Ga0207705_10103156 3300025909 Bacteria 2100
88 Ga0207705_10180917 3300025909 Bacteria 1591
89 Ga0207660_10000573 3300025917 Bacteria 24729
90 Ga0207657_10003060 3300025919 Bacteria 17896
91 Ga0207649_10000035 3300025920 Bacteria 134650
92 Ga0207649_10054783 3300025920 Bacteria 2483
93 Ga0207652_10000021 3300025921 Bacteria 159712
94 Ga0207694_10183649 3300025924 Bacteria 1697
95 Ga0207650_10052856 3300025925 Bacteria 3010
96 Ga0207650_10235307 3300025925 Bacteria 1479
97 Ga0207706_10103881 3300025933 Bacteria 2500
98 Ga0207691_10178601 3300025940 Bacteria 1856
99 Ga0207661_10077436 3300025944 Bacteria 2735
100 Ga0207667_10000024 3300025949 Bacteria 355874
101 Ga0207640_10000031 3300025981 Bacteria 120815
102 Ga0207640_10009996 3300025981 Bacteria 5329
103 Ga0207640_10202017 3300025981 Bacteria 1507
104 Ga0207639_10031974 3300026041 Bacteria 3871
105 Ga0207639_10122684 3300026041 Bacteria 2137
106 Ga0207678_10003572 3300026067 Bacteria 13981
107 Ga0207674_10531254 3300026116 Bacteria 1136
108 Ga0207683_10012052 3300026121 Bacteria 7381
109 Ga0207698_10055575 3300026142 Bacteria 3052
110 Ga0207698_10428254 3300026142 Bacteria 1271
111 Ga0268266_10207080 3300028379 Bacteria 1797
112 Ga0268266_10412463 3300028379 Bacteria 1279
113 Ga0268265_10274942 3300028380 Bacteria 1504
114 Ga0314311_1065954 3300030733 Bacteria 3164
115 Ga0307408_100095318 3300031548 Bacteria 2255
116 Ga0307408_100108443 3300031548 Bacteria 2128
117 Ga0307408_100308008 3300031548 Bacteria 1329
118 Ga0316576_10035821 3300031727 Bacteria 3546
119 Ga0316578_10117066 3300031728 Bacteria 1601
120 Ga0307405_10009223 3300031731 Bacteria 5048
121 Ga0307405_10116867 3300031731 Bacteria 1817
122 Ga0307405_10301018 3300031731 Bacteria 1216
123 Ga0316577_10007523 3300031733 Bacteria 5813
124 Ga0307413_10038866 3300031824 Bacteria 2761
125 Ga0307413_10046096 3300031824 Bacteria 2589
126 Ga0307413_10228736 3300031824 Bacteria 1364
127 Ga0307410_10011308 3300031852 Bacteria 5099
128 Ga0307410_10090671 3300031852 Bacteria 2168
129 Ga0307410_10092261 3300031852 Bacteria 2152
130 Ga0307410_10097623 3300031852 Bacteria 2099
131 Ga0307410_10285186 3300031852 Bacteria 1297
132 Ga0307406_10053784 3300031901 Bacteria 2566
133 Ga0307406_10107509 3300031901 Bacteria 1913
134 Ga0307407_10364733 3300031903 Bacteria 1027
135 Ga0307412_10008701 3300031911 Bacteria 5806
136 Ga0307412_10028246 3300031911 Bacteria 3507
137 Ga0307412_10052437 3300031911 Bacteria 2701
138 Ga0307409_100006654 3300031995 Bacteria 6822
139 Ga0307409_100026296 3300031995 Bacteria 4101
140 Ga0307409_100045196 3300031995 Bacteria 3323
141 Ga0307409_100244314 3300031995 Bacteria 1636
142 Ga0307409_100259863 3300031995 Bacteria 1593
143 Ga0307409_100594862 3300031995 Bacteria 1092
144 Ga0307416_100043082 3300032002 Bacteria 3531
145 Ga0307416_100098677 3300032002 Bacteria 2534
146 Ga0307416_100113994 3300032002 Bacteria 2390
147 Ga0307416_100176158 3300032002 Bacteria 1998
148 Ga0307416_100253217 3300032002 Bacteria 1715
149 Ga0307416_100386331 3300032002 Bacteria 1432
150 Ga0307414_10000385 3300032004 Bacteria 23999
151 Ga0307414_10001045 3300032004 Bacteria 14151
152 Ga0307414_10003453 3300032004 Bacteria 8433
153 Ga0307414_10026713 3300032004 Bacteria 3719
154 Ga0307414_10051426 3300032004 Bacteria 2860
155 Ga0307414_10091408 3300032004 Bacteria 2262
156 Ga0307414_10534400 3300032004 Bacteria 1042
157 Ga0307411_10001862 3300032005 Bacteria 8972
158 Ga0307411_10003384 3300032005 Bacteria 7386
159 Ga0307411_10171505 3300032005 Bacteria 1636
160 Ga0307411_10202903 3300032005 Bacteria 1524
161 Ga0307411_10365331 3300032005 Bacteria 1182
162 Ga0307411_10563261 3300032005 Bacteria 974
163 Ga0307415_100012718 3300032126 Bacteria 4877
164 Ga0307415_100104293 3300032126 Bacteria 2088
165 Ga0307415_100132361 3300032126 Bacteria 1890
166 Ga0307510_10108292 3300033180 Bacteria 2533
167 Ga0316574_0118104 3300035398 Bacteria 1702
168 Ga0316582_0024923 3300036647 Bacteria 3585
169 Ga0316582_0053334 3300036647 Bacteria 2572
170 Ga0316584_0051327 3300036712 Bacteria 3084
171 Ga0316584_0278859 3300036712 Bacteria 1215
172 Ga0395900_0398386 3300037418 Bacteria 1341
173 Ga0395898_0341167 3300037466 Bacteria 1429
174 Ga0395905_0002912 3300037471 Bacteria 18666
175 Ga0395905_0087873 3300037471 Bacteria 2914
176 Ga0395905_0343533 3300037471 Bacteria 1384
177 Ga0395901_0077050 3300038443 Bacteria 3480
178 Ga0395901_0464946 3300038443 Bacteria 1292
179 Ga0237819_00318 3300038705 Bacteria 17701
180 Ga0436365_0192103 3300039437 Bacteria 182879
181 Ga0436363_0947222 3300039450 Bacteria 967
182 Ga0436362_1073687 3300039453 Bacteria 111211
183 Ga0439439_0000955 3300041406 Bacteria 5391
184 Ga0439461_0000275 3300041410 Bacteria 7427
185 Ga0439465_0001604 3300041413 Bacteria 7357
186 Ga0439465_0004255 3300041413 Bacteria 4657
187 Ga0439431_0000227 3300041997 Bacteria 11359
188 Ga0439442_003694 3300042002 Bacteria 3029
189 Ga0439445_0001121 3300042004 Bacteria 5728
190 Ga0439445_0002061 3300042004 Bacteria 4442
191 Ga0439432_000286 3300042006 Bacteria 18148
192 Ga0439449_0070168 3300042007 Bacteria 1291
193 Ga0439462_0000767 3300042015 Bacteria 6669
194 Ga0439462_0017979 3300042015 Bacteria 1834
195 Ga0439434_0000547 3300042435 Bacteria 10772
196 Ga0439435_0041819 3300042436 Bacteria 1285
197 Ga0466960_0082037 3300044901 Bacteria 1627
198 Ga0451576_0000017 3300045051 Bacteria 558261
199 Ga0495627_001122 3300046453 Bacteria 17400
200 Ga0495638_0050652 3300046460 Bacteria 2593
201 Ga0495610_0000031 3300046512 Bacteria 254606
202 Ga0495643_0020248 3300046522 Bacteria 3839
203 Ga0495663_0009087 3300046525 Bacteria 2753
204 Ga0495668_0000087 3300046616 Bacteria 151819
205 Ga0495625_0002250 3300046660 Bacteria 21249
206 Ga0495687_005939 3300047443 Bacteria 7628
207 Ga0495681_0000472 3300047470 Bacteria 30863
208 Ga0495681_0042932 3300047470 Bacteria 2185
209 Ga0496102_0093716 3300048905 Bacteria 2782
210 Ga0496103_0120616 3300048906 Bacteria 1670
211 Ga0496109_0452929 3300048912 Bacteria 1212
212 Ga0496109_0544804 3300048912 Bacteria 1095
213 Ga0496117_0005479 3300048920 Bacteria 13301
214 Ga0496118_0000162 3300048921 Bacteria 119635
215 Ga0501292_000049 3300049515 Bacteria 24987
216 Ga0501294_000131 3300049517 Bacteria 8738
217 Ga0501300_000260 3300049523 Bacteria 8045
218 Ga0501034_0039722 3300049571 Bacteria 4766
219 Ga0501034_0047087 3300049571 Bacteria 4356
220 Ga0501043_0126109 3300049579 Bacteria 2007
221 Ga0501047_0237997 3300049581 Bacteria 1672
222 Ga0501222_000255 3300049662 Bacteria 9007
223 Ga0501223_000502 3300049663 Bacteria 9508
224 Ga0501235_017975 3300049669 Bacteria 1565
225 Ga0501249_000160 3300049679 Bacteria 20848
226 Ga0501257_000083 3300049686 Bacteria 23257
227 Ga0501259_000242 3300049688 Bacteria 8518
228 Ga0501261_000013 3300049690 Bacteria 45622
229 Ga0501245_000424 3300049708 Bacteria 5105
230 Ga0501279_000017 3300049775 Bacteria 62448
231 Ga0501280_000015 3300049776 Bacteria 55614
232 Ga0501280_006159 3300049776 Bacteria 1697
233 Ga0501281_00053 3300049777 Bacteria 13557
234 Ga0501282_000389 3300049778 Bacteria 5311
235 Ga0501035_0341887 3300049822 Bacteria 1254
236 nmdc:mga07m45_11099_c1 3300050496 Bacteria 4725
237 Ga0500643_008227 3300053087 Bacteria 4119
238 Ga0500643_009643 3300053087 Bacteria 3670
239 Ga0500592_000461 3300053116 Bacteria 6757
240 Ga0500592_001266 3300053116 Bacteria 4110
241 Ga0500607_000132 3300053121 Bacteria 61625
242 Ga0500607_000618 3300053121 Bacteria 34317
243 Ga0500608_037073 3300053122 Bacteria 2329
244 Ga0500658_0010682 3300053134 Bacteria 3386
245 Ga0500559_0001211 3300053136 Bacteria 15352
246 Ga0500568_0000883 3300053139 Bacteria 21017
247 Ga0500568_0005768 3300053139 Bacteria 6338
248 Ga0500604_0000087 3300053151 Bacteria 31301
249 Ga0500604_0006073 3300053151 Bacteria 3189
250 Ga0500616_0000916 3300053153 Bacteria 32216
251 Ga0500616_0004722 3300053153 Bacteria 9590
252 Ga0500622_0000119 3300053156 Bacteria 82219
253 Ga0500624_000004 3300053157 Bacteria 196921
254 Ga0500627_0000013 3300053158 Bacteria 136204
255 Ga0500637_0000006 3300053178 Bacteria 99157
256 Ga0500637_0054735 3300053178 Bacteria 2278
257 Ga0500645_004804 3300053730 Bacteria 5108
258 2517568140 2517487022 Bacteria 7227575
259 2643820050 2643221560 Bacteria 4801179
260 2643834447 2643221563 Bacteria 4726935
261 2643951946 2643221588 Bacteria 3692460
262 2644055373 2643221608 Bacteria 4724829
263 2644127590 2643221622 Bacteria 4212502
264 2802723912 2802428859 Bacteria 6667919
265 2837681363 2837678835 Bacteria 5252418
266 2852656373 2852653556 Bacteria 4050083
267 2852684609 2852680915 Bacteria 4100189
268 2882806795 2882806704 Bacteria 3007728
269 2895883182 2895880812 Bacteria 11255272
270 2896429656 2896429255 Bacteria 2557483
271 2970032973 2970026789 Bacteria 6785236
272 3000866928 3000865235 Bacteria 3106258
273 8045866378 8045864390 Bacteria 5043873
274 8056879852 8056875544 Bacteria 4355797
275 Ga0307405_10014003
276 JGI24739J22299_10049945
277 JGI24735J21928_10026377
278 JGI24744J21845_10001513
279 JGI25153J46596_10009247
280 rootH1_10014585
281 rootH1_10160980
282 rootH2_10172597
283 rootL2_10092438
284 Ga0055537_1002195
285 Ga0055524_1000210
286 Ga0055536_1003782
287 Ga0055536_1003805
288 Ga0055530_10000116
289 Ga0055530_10020549
290 Ga0055531_10004300
291 Ga0055531_10004873
292 Ga0055531_10013919
293 Ga0055531_10032084
294 Ga0065165_1002232
295 Ga0065707_10082279
296 Ga0070658_10006100
297 Ga0070658_10129934
298 Ga0070658_10132766
299 Ga0070658_10136965
300 Ga0070670_100037032
301 Ga0070680_100000253
302 Ga0070682_100147559
303 Ga0070660_100001148
304 Ga0070661_100000009
305 Ga0070661_100133192
306 Ga0070659_100005406
307 Ga0070700_100192926
308 Ga0070708_100329268
309 Ga0070663_100011855
310 Ga0070679_100000015
311 Ga0068853_100042096
312 Ga0068853_100077248
313 Ga0068853_100364501
314 Ga0070672_100044412
315 Ga0070665_100068338
316 Ga0070665_100430639
317 Ga0068855_100266263
318 Ga0070664_100064508
319 Ga0068854_100000419
320 Ga0068854_100013239
321 Ga0068852_100098620
322 Ga0075363_100004877
323 Ga0097621_100022019
324 Ga0075370_10031896
325 Ga0068871_100066642
326 Ga0079104_1014405
327 Ga0105238_10233496
328 Ga0105239_10007000
329 Ga0157373_10027739
330 Ga0157373_10193126
331 Ga0157371_10013348
332 Ga0157371_10229095
333 Ga0157369_10383166
334 Ga0157374_10015908
335 Ga0157372_10011211
336 Ga0157372_10122868
337 Ga0157380_10012764
338 Ga0157380_10148403
339 Ga0213873_10000009
340 Ga0213876_10000004
341 Ga0228711_1013421
342 Ga0228710_1002821
343 Ga0209148_1001582
344 Ga0209565_1000029
345 Ga0209673_1000754
346 Ga0209675_1000697
347 Ga0209675_1003172
348 Ga0209676_1000273
349 Ga0209676_1000402
350 Ga0209676_1001476
351 Ga0209758_1001653
352 Ga0209050_1000218
353 Ga0209050_1009212
354 Ga0209050_1042789
355 Ga0209256_1000008
356 Ga0209257_1000248
357 Ga0209257_1000435
358 Ga0209257_1005585
359 Ga0209257_1018037
360 Ga0207705_10012593
361 Ga0207705_10103156
362 Ga0207705_10180917
363 Ga0207660_10000573
364 Ga0207657_10003060
365 Ga0207649_10000035
366 Ga0207649_10054783
367 Ga0207652_10000021
368 Ga0207694_10183649
369 Ga0207650_10052856
370 Ga0207650_10235307
371 Ga0207706_10103881
372 Ga0207691_10178601
373 Ga0207661_10077436
374 Ga0207667_10000024
375 Ga0207640_10000031
376 Ga0207640_10009996
377 Ga0207640_10202017
378 Ga0207639_10031974
379 Ga0207639_10122684
380 Ga0207678_10003572
381 Ga0207674_10531254
382 Ga0207683_10012052
383 Ga0207698_10055575
384 Ga0207698_10428254
385 Ga0268266_10207080
386 Ga0268266_10412463
387 Ga0268265_10274942
388 Ga0314311_1065954
389 Ga0307408_100095318
390 Ga0307408_100108443
391 Ga0307408_100308008
392 Ga0316576_10035821
393 Ga0316578_10117066
394 Ga0307405_10009223
395 Ga0307405_10116867
396 Ga0307405_10301018
397 Ga0316577_10007523
398 Ga0307413_10038866
399 Ga0307413_10046096
400 Ga0307413_10228736
401 Ga0307410_10011308
402 Ga0307410_10090671
403 Ga0307410_10092261
404 Ga0307410_10097623
405 Ga0307410_10285186
406 Ga0307406_10053784
407 Ga0307406_10107509
408 Ga0307407_10364733
409 Ga0307412_10008701
410 Ga0307412_10028246
411 Ga0307412_10052437
412 Ga0307409_100006654
413 Ga0307409_100026296
414 Ga0307409_100045196
415 Ga0307409_100244314
416 Ga0307409_100259863
417 Ga0307409_100594862
418 Ga0307416_100043082
419 Ga0307416_100098677
420 Ga0307416_100113994
421 Ga0307416_100176158
422 Ga0307416_100253217
423 Ga0307416_100386331
424 Ga0307414_10000385
425 Ga0307414_10001045
426 Ga0307414_10003453
427 Ga0307414_10026713
428 Ga0307414_10051426
429 Ga0307414_10091408
430 Ga0307414_10534400
431 Ga0307411_10001862
432 Ga0307411_10003384
433 Ga0307411_10171505
434 Ga0307411_10202903
435 Ga0307411_10365331
436 Ga0307411_10563261
437 Ga0307415_100012718
438 Ga0307415_100104293
439 Ga0307415_100132361
440 Ga0307510_10108292
441 Ga0316574_0118104
442 Ga0316582_0024923
443 Ga0316582_0053334
444 Ga0316584_0051327
445 Ga0316584_0278859
446 Ga0395900_0398386
447 Ga0395898_0341167
448 Ga0395905_0002912
449 Ga0395905_0087873
450 Ga0395905_0343533
451 Ga0395901_0077050
452 Ga0395901_0464946
453 Ga0237819_00318
454 Ga0436365_0192103
455 Ga0436363_0947222
456 Ga0436362_1073687
457 Ga0439439_0000955
458 Ga0439461_0000275
459 Ga0439465_0001604
460 Ga0439465_0004255
461 Ga0439431_0000227
462 Ga0439442_003694
463 Ga0439445_0001121
464 Ga0439445_0002061
465 Ga0439432_000286
466 Ga0439449_0070168
467 Ga0439462_0000767
468 Ga0439462_0017979
469 Ga0439434_0000547
470 Ga0439435_0041819
471 Ga0466960_0082037
472 Ga0451576_0000017
473 Ga0495627_001122
474 Ga0495638_0050652
475 Ga0495610_0000031
476 Ga0495643_0020248
477 Ga0495663_0009087
478 Ga0495668_0000087
479 Ga0495625_0002250
480 Ga0495687_005939
481 Ga0495681_0000472
482 Ga0495681_0042932
483 Ga0496102_0093716
484 Ga0496103_0120616
485 Ga0496109_0452929
486 Ga0496109_0544804
487 Ga0496117_0005479
488 Ga0496118_0000162
489 Ga0501292_000049
490 Ga0501294_000131
491 Ga0501300_000260
492 Ga0501034_0039722
493 Ga0501034_0047087
494 Ga0501043_0126109
495 Ga0501047_0237997
496 Ga0501222_000255
497 Ga0501223_000502
498 Ga0501235_017975
499 Ga0501249_000160
500 Ga0501257_000083
501 Ga0501259_000242
502 Ga0501261_000013
503 Ga0501245_000424
504 Ga0501279_000017
505 Ga0501280_000015
506 Ga0501280_006159
507 Ga0501281_00053
508 Ga0501282_000389
509 Ga0501035_0341887
510 nmdc:mga07m45_11099_c1
511 Ga0500643_008227
512 Ga0500643_009643
513 Ga0500592_000461
514 Ga0500592_001266
515 Ga0500607_000132
516 Ga0500607_000618
517 Ga0500608_037073
518 Ga0500658_0010682
519 Ga0500559_0001211
520 Ga0500568_0000883
521 Ga0500568_0005768
522 Ga0500604_0000087
523 Ga0500604_0006073
524 Ga0500616_0000916
525 Ga0500616_0004722
526 Ga0500622_0000119
527 Ga0500624_000004
528 Ga0500627_0000013
529 Ga0500637_0000006
530 Ga0500637_0054735
531 Ga0500645_004804
532 2517568140
533 2643820050
534 2643834447
535 2643951946
536 2644055373
537 2644127590
538 2802723912
539 2837681363
540 2852656373
541 2852684609
542 2882806795
543 2895883182
544 2896429656
545 2970032973
546 3000866928
547 8045866378
548 8056879852

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00494

SQS_PSY

Squalene/phytoene synthase

42

305

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
5iys-assembly1.cif.gz_A crystal structure of a dehydrosqualene synthase in complex with ligand 0.9199 5 290
5iys-assembly1.cif.gz_A crystal structure of a dehydrosqualene synthase in complex with ligand 0.8982 5 290
2zcr-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with bisphosphonate bph-698 0.8925 5 287
2zy1-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with bisphosphonate bph-830 0.886 5 287
3adz-assembly1.cif.gz_A crystal structure of the c(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with intermediate pspp 0.8827 5 287
ID Description Score Start End Superfamily
af_Q330K2_57_309_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8878 9 265 1.10.600.10
af_P9WHP3_1_280_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8828 5 285 1.10.600.10
3w7fA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8794 2 287 1.10.600.10
af_Q330K2_57_309_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8781 9 265 1.10.600.10
3w7fA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8735 2 287 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A4Q3CGR4-F1-model_v4 Phytoene/squalene synthase family protein 0.9932 1 294 GO:0004311
GO:0016117
GO:0051996
AF-A0A437NDA7-F1-model_v4 Phytoene/squalene synthase family protein 0.9839 3 289 GO:0004311
GO:0016117
GO:0051996
AF-A0A2U0SAQ8-F1-model_v4 Phytoene synthase 0.9812 1 309 GO:0004311
GO:0016117
GO:0051996
AF-A0A4Q3CGR4-F1-model_v4 Phytoene/squalene synthase family protein 0.9799 1 294 GO:0004311
GO:0016117
GO:0051996
AF-A0A520YD57-F1-model_v4 Phytoene/squalene synthase family protein 0.9766 2 252 GO:0004311
GO:0016117
GO:0051996

Map