F382017

General Info

Members Datasets Scaffolds Average Seq Length
277 227 554 485

Family's Representative Sequence

Representative Sequence 3300048924|Ga0496121_0093017|Ga0496121_0093017_559_2277
Length 572
Sequence LGFGGEKSTMRQTTDVDLALAPRPDGMPLQRWLHGELRAAIVSGRLAPGVRLPATRELASRFGLSRGTVLGVFAQLTAEGYIEGAVGRGSFVAAELPDSRLEAPQPVALDKGGSGGAREGERPAGPDRAAAVREVERATGLGAEPAADRGAAQELVSYAFSPSGNGANGATQPDASAGLSARGKLLARSAFALDGRPLPAQAFRAGQPDLDAFPFALWARIAARRTRLLHRSMLADGDACGYWPLREAIAAHVRMARGIACSAGQVVIVASVQQVLDLGARLLLDPGDSVWLEDPGYPGARLVFEAAGARIVGVPVDDDGMDVAAGMAREPSAKLAYVTAGRHAPLGPPLAHERRLALLGWARSHGAFVIEDDYDSEYRFEGRPLAALKSLDDSGRVIYCGTFSKLLFPALRIAYAVLPERLVEPFSAALSLTSRHVPLDSQATLHEFIAEGHFGRHARRMRLLYGERAAALRDAAARHLAGVLEVPPIVAGLDAPAWLPPGTDDARVATRAALAGIETRPLSAYAVQRAAPAGLVLGFACVEVAQIEAGARGLAEVLGSMWDGSEWATKTR

Samples

Sample ID Description Type Environment
1 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
4 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
5 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
8 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
9 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
10 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
11 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
12 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
13 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
14 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
15 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
16 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
17 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
18 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
19 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
20 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
21 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
22 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
23 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
31 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
34 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
35 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
36 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
37 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
38 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
40 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
41 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
42 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
43 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
44 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
45 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
46 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
49 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
50 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
52 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
53 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
54 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
55 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
56 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
57 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
58 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
59 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
60 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
61 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
62 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
63 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
64 3300016635 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A10 Metagenome Rhizosphere
65 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
66 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
67 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
68 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
70 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
71 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
74 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
96 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
97 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
98 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
99 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
100 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
101 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
102 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
103 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
104 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
105 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
106 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
107 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
108 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
109 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
110 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
111 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
112 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
113 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
114 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
115 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
116 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
117 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
118 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
119 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
120 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
121 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
122 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
123 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
124 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
125 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
126 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
127 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
128 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
129 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
130 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
131 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
132 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
133 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
134 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
135 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
136 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
137 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
138 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
139 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
140 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
141 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
142 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
143 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
144 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
145 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
146 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
147 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
148 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
149 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
150 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
151 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
152 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
153 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
154 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
155 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
156 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
157 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
158 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
159 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
160 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
161 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
162 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
163 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
164 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
165 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
166 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
167 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
168 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
169 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
170 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
171 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
172 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
173 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
174 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
175 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
176 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
177 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
178 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
179 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
180 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
181 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
182 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
183 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
184 2510065053 Pseudomonas sp. MOIL14HWK12:I1 Isolate Rhizosphere
185 2510065055 Pseudomonas sp. MOIL14HWK12:I2 Isolate Rhizosphere
186 2510065058 Pseudomonas oleovorans MOIL14HWK12 Isolate Rhizosphere
187 2511231015 Pseudomonas sp. GM49 Isolate Nodule
188 2513237166 Paraburkholderia azotifigens UYPR1.413 Isolate Nodule
189 2554235341 Pseudomonas protegens CHA0 Isolate Rhizosphere
190 2562617112 Burkholderia sp. BT03 Isolate Rhizosphere
191 2599185160 Pseudomonas sp. NFPP25 Isolate Rhizoplane
192 2599185161 Pseudomonas sp. NFPP09 Isolate Rhizoplane
193 2599185162 Pseudomonas sp. NFPP10 Isolate Rhizoplane
194 2599185163 Pseudomonas sp. NFPP12 Isolate Rhizoplane
195 2599185164 Pseudomonas sp. NFPP13 Isolate Rhizoplane
196 2599185165 Pseudomonas sp. NFPP18 Isolate Rhizoplane
197 2599185166 Pseudomonas sp. NFPP08 Isolate Rhizoplane
198 2599185168 Pseudomonas sp. NFPP05 Isolate Rhizoplane
199 2599185181 Pseudomonas sp. NFPP17 Isolate Rhizoplane
200 2599185182 Pseudomonas sp. NFPP19 Isolate Rhizoplane
201 2599185186 Pseudomonas sp. NFPP15 Isolate Rhizoplane
202 2599185356 Pseudomonas sp. NFPP14 Isolate Rhizoplane
203 2600255313 Pseudomonas sp. NFPP16 Isolate Rhizoplane
204 2667528171 Pseudomonas sp. NFPP22 Isolate Rhizoplane
205 2711768613 Burkholderia sp. BT03 Isolate Rhizosphere
206 2773857672 Pseudomonas sp. 1766 Isolate Unclassified
207 2791355137 Paraburkholderia piptadeniae STM7183 Isolate Unclassified
208 2818991464 Pseudomonas protegens 3295 Isolate Rhizosphere
209 2842324504 Paraburkholderia fungorum SEMIA 4007 Isolate Nodule
210 2842348783 Paraburkholderia fungorum SEMIA 4013 Isolate Nodule
211 2842454564 Paraburkholderia fungorum SEMIA 4056 Isolate Nodule
212 2844665904 Pseudomonas protegens H1F10C Isolate Unclassified
213 2900634093 Paraburkholderia dipogonis ICMP 19430 Isolate Unclassified
214 2904615490 Paraburkholderia franconis CNPSo 3157 Isolate Unclassified
215 2917070673 Pseudomonas protegens CHA0 Isolate Rhizosphere
216 2917832318 Pseudomonas rhizoryzae RY24 Isolate Unclassified
217 2919125081 Pseudomonas psychrotolerans 1545 Isolate Rhizosphere
218 2935353572 Pseudomonas protegens TECH19 Isolate Unclassified
219 2974298342 Pseudomonas sp. SORGH_AS 211 Isolate Unclassified
220 2984499530 Pseudomonas sp. SORGH_AS199 Isolate Aerial Root
221 2984504281 Pseudomonas psychrotolerans SORGH_AS201 Isolate Aerial Root
222 637000220 Pseudomonas protegens Pf-5 Isolate Rhizoplane
223 642555112 Paraburkholderia phymatum STM815 Isolate Nodule
224 642555113 Paraburkholderia phytofirmans PsJN Isolate Unclassified
225 8016728285 Pseudomonas psychrotolerans SORGH_AS 227 Isolate Unclassified
226 8019769354 Pseudomonas sp. MSSRFD41 Isolate Rhizosphere
227 8057798959 Pseudomonas piscis BW16M1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.51
Metatranscriptomes 0
Isolates 19.49

Biome Distribution

Category Percentage (%)
Aerial Root 1.44
Bulb 0
Endosphere 6.14
Nodule 3.25
Rhizoplane 10.47
Rhizosphere 64.62
Stem 0
Stem Tuber 0
Unclassified 0.72

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496121_0093017 3300048924 Bacteria 2349
2 JGI25162J39368_1000050 3300002737 Bacteria 157157
3 JGI25163J39215_1000384 3300002771 Bacteria 14129
4 JGI25164J39214_1000025 3300002772 Bacteria 157157
5 JGI25165J46597_1000176 3300003214 Bacteria 99160
6 rootL2_10011935 3300003322 Bacteria 9880
7 JGI25160J50197_1000036 3300003354 Bacteria 166820
8 Ga0055535_1000322 3300003761 Bacteria 48378
9 Ga0055529_1000397 3300003763 Bacteria 46314
10 Ga0055524_1000003 3300003775 Bacteria 399748
11 Ga0065165_1000533 3300005262 Bacteria 57970
12 Ga0070683_100002858 3300005329 Bacteria 13830
13 Ga0070666_10013323 3300005335 Bacteria 5214
14 Ga0070680_100073945 3300005336 Bacteria 2803
15 Ga0070682_100036306 3300005337 Bacteria 3012
16 Ga0070660_100044581 3300005339 Bacteria 3393
17 Ga0070668_100021287 3300005347 Bacteria 4902
18 Ga0070669_100166125 3300005353 Bacteria 1718
19 Ga0070667_100074269 3300005367 Bacteria 2900
20 Ga0070708_100002957 3300005445 Bacteria 13208
21 Ga0070662_100008948 3300005457 Bacteria 6527
22 Ga0070706_100000296 3300005467 Bacteria 60457
23 Ga0070697_100000323 3300005536 Bacteria 37824
24 Ga0070665_100080354 3300005548 Bacteria 3265
25 Ga0068855_100002110 3300005563 Bacteria 24594
26 Ga0070664_100011038 3300005564 Bacteria 7325
27 Ga0068854_100022988 3300005578 Bacteria 4254
28 Ga0068856_100165402 3300005614 Bacteria 2223
29 Ga0068861_100043660 3300005719 Bacteria 3367
30 Ga0068851_10023096 3300005834 Bacteria 3036
31 Ga0068863_100136666 3300005841 Bacteria 2342
32 Ga0068860_100063833 3300005843 Bacteria 3497
33 Ga0081538_10022845 3300005981 Bacteria 4516
34 Ga0070717_10234518 3300006028 Unclassified 1616
35 Ga0075363_100035842 3300006048 Bacteria 2599
36 Ga0070716_100006044 3300006173 Bacteria 5899
37 Ga0070712_100000294 3300006175 Bacteria 28077
38 Ga0097621_100089805 3300006237 Bacteria 2569
39 Ga0068871_100023442 3300006358 Bacteria 4775
40 Ga0075428_100078662 3300006844 Bacteria 3600
41 Ga0075434_100009230 3300006871 Bacteria 9191
42 Ga0099826_10000002 3300006948 Bacteria 1125830
43 Ga0099826_10098202 3300006948 Bacteria 1773
44 Ga0105251_10001703 3300009011 Bacteria 18420
45 Ga0105251_10001857 3300009011 Bacteria 17362
46 Ga0105244_10073457 3300009036 Bacteria 1702
47 Ga0105250_10000833 3300009092 Bacteria 18333
48 Ga0105240_10004838 3300009093 Bacteria 20291
49 Ga0105240_10114526 3300009093 Bacteria 3257
50 Ga0111539_10000802 3300009094 Bacteria 40941
51 Ga0111539_10090748 3300009094 Bacteria 3590
52 Ga0105245_10143029 3300009098 Bacteria 2255
53 Ga0105247_10051979 3300009101 Bacteria 2525
54 Ga0114129_10020387 3300009147 Bacteria 9430
55 Ga0105243_10000899 3300009148 Bacteria 27949
56 Ga0105243_10155329 3300009148 Bacteria 1967
57 Ga0105241_10033772 3300009174 Bacteria 3841
58 Ga0105242_10169910 3300009176 Bacteria 1915
59 Ga0105248_10101935 3300009177 Bacteria 3235
60 Ga0105237_10197536 3300009545 Bacteria 2011
61 Ga0157371_10000484 3300013102 Bacteria 48468
62 Ga0157371_10002539 3300013102 Bacteria 17337
63 Ga0157369_10005033 3300013105 Bacteria 15472
64 Ga0157369_10009853 3300013105 Bacteria 10918
65 Ga0157369_10037339 3300013105 Bacteria 5318
66 Ga0157374_10019013 3300013296 Bacteria 6076
67 Ga0157374_10023561 3300013296 Bacteria 5509
68 Ga0163162_10049336 3300013306 Bacteria 4218
69 Ga0163162_10170182 3300013306 Bacteria 2303
70 Ga0157372_10066925 3300013307 Bacteria 4036
71 Ga0157372_10069526 3300013307 Bacteria 3960
72 Ga0157372_10072117 3300013307 Bacteria 3891
73 Ga0163163_10040586 3300014325 Bacteria 4545
74 Ga0182008_10015391 3300014497 Bacteria 3991
75 Ga0157379_10001668 3300014968 Bacteria 18355
76 Ga0157379_10033535 3300014968 Bacteria 4578
77 Ga0183361_10021 3300016635 Bacteria 114065
78 Ga0213872_10000007 3300021361 Bacteria 228206
79 Ga0213872_10021523 3300021361 Bacteria 2969
80 Ga0209760_100033 3300025207 Bacteria 136583
81 Ga0209437_100002 3300025233 Bacteria 1574801
82 Ga0209258_100025 3300025242 Bacteria 534777
83 Ga0209759_1000028 3300025256 Bacteria 298755
84 Ga0209759_1000693 3300025256 Bacteria 30223
85 Ga0209233_1000004 3300025261 Bacteria 1574798
86 Ga0209455_1000112 3300025272 Bacteria 186237
87 Ga0209256_1000007 3300025299 Bacteria 1136599
88 Ga0207426_1000014 3300025302 Bacteria 649413
89 Ga0207696_1000910 3300025711 Bacteria 18339
90 Ga0207713_1001502 3300025735 Bacteria 18428
91 Ga0207713_1024028 3300025735 Bacteria 2851
92 Ga0207699_10030020 3300025906 Bacteria 3038
93 Ga0207684_10006462 3300025910 Bacteria 10689
94 Ga0207707_10007054 3300025912 Bacteria 9793
95 Ga0207695_10000242 3300025913 Bacteria 142011
96 Ga0207693_10000785 3300025915 Bacteria 28435
97 Ga0207663_10003917 3300025916 Bacteria 7361
98 Ga0207657_10004616 3300025919 Bacteria 14554
99 Ga0207652_10009055 3300025921 Bacteria 8018
100 Ga0207687_10039305 3300025927 Bacteria 3239
101 Ga0207706_10004921 3300025933 Bacteria 12491
102 Ga0207709_10001036 3300025935 Bacteria 20530
103 Ga0207711_10003212 3300025941 Bacteria 14235
104 Ga0207661_10000561 3300025944 Bacteria 23743
105 Ga0207667_10001688 3300025949 Bacteria 27790
106 Ga0207658_10110066 3300025986 Bacteria 2176
107 Ga0207641_10029904 3300026088 Bacteria 4507
108 Ga0207674_10056122 3300026116 Bacteria 4001
109 Ga0207675_100065996 3300026118 Bacteria 3382
110 Ga0207683_10151441 3300026121 Bacteria 2093
111 Ga0209282_1000001 3300027666 Bacteria 2450367
112 Ga0207428_10000948 3300027907 Bacteria 32273
113 Ga0265327_10000457 3300031251 Bacteria 73150
114 Ga0265316_10072913 3300031344 Bacteria 2645
115 Ga0307412_10021696 3300031911 Bacteria 3927
116 Ga0307412_10032615 3300031911 Bacteria 3303
117 Ga0373931_0016554 3300035691 Bacteria 3631
118 Ga0373927_0074725 3300035695 Bacteria 2194
119 Ga0373927_0117991 3300035695 Bacteria 1731
120 Ga0395898_0004404 3300037466 Bacteria 15404
121 Ga0395905_0000009 3300037471 Bacteria 488729
122 Ga0395905_0029978 3300037471 Bacteria 5128
123 Ga0400490_60616 3300038726 Bacteria 1690
124 Ga0400485_18728 3300038735 Bacteria 6937
125 Ga0400488_47385 3300038741 Bacteria 5726
126 Ga0400486_04403 3300038742 Bacteria 12961
127 Ga0400483_290837 3300039062 Bacteria 13656
128 Ga0400489_60328 3300039093 Bacteria 8811
129 Ga0400489_69096 3300039093 Bacteria 4195
130 Ga0436361_0163583 3300039447 Bacteria 173204
131 Ga0495590_0026649 3300046457 Bacteria 2028
132 Ga0495629_0000048 3300046459 Bacteria 109659
133 Ga0495638_0003175 3300046460 Bacteria 12992
134 Ga0495641_0025409 3300046461 Bacteria 2908
135 Ga0495651_0039407 3300046462 Bacteria 3679
136 Ga0495653_0000586 3300046463 Bacteria 28020
137 Ga0495580_0003320 3300046472 Bacteria 13762
138 Ga0495580_0004366 3300046472 Bacteria 11873
139 Ga0495580_0007545 3300046472 Bacteria 8730
140 Ga0495582_0005770 3300046473 Bacteria 6896
141 Ga0495605_0005090 3300046474 Bacteria 7668
142 Ga0495605_0015123 3300046474 Bacteria 4207
143 Ga0495664_0073593 3300046477 Bacteria 2043
144 Ga0495607_0002888 3300046501 Bacteria 13568
145 Ga0495583_0001755 3300046506 Bacteria 20693
146 Ga0495583_0020506 3300046506 Bacteria 3422
147 Ga0495620_0000007 3300046515 Bacteria 191058
148 Ga0495620_0028545 3300046515 Bacteria 2593
149 Ga0495630_0000996 3300046517 Bacteria 19710
150 Ga0495632_0001529 3300046519 Bacteria 19096
151 Ga0495643_0000789 3300046522 Bacteria 35159
152 Ga0495643_0023957 3300046522 Bacteria 3465
153 Ga0495665_0023346 3300046531 Bacteria 3321
154 Ga0495609_0003133 3300046538 Bacteria 9652
155 Ga0495633_0027304 3300046558 Bacteria 2791
156 Ga0495661_0057481 3300046665 Bacteria 2322
157 Ga0495599_0010641 3300046678 Bacteria 5630
158 Ga0495623_0001035 3300046679 Bacteria 18786
159 Ga0495646_0001843 3300046680 Bacteria 12729
160 Ga0495613_0028101 3300046689 Bacteria 4185
161 Ga0495589_0026479 3300046794 Bacteria 2938
162 Ga0495604_0001868 3300047317 Bacteria 17132
163 Ga0495674_0027815 3300047319 Bacteria 5163
164 Ga0495674_0062886 3300047319 Bacteria 3230
165 Ga0495672_0004236 3300047320 Bacteria 11850
166 Ga0495680_0033785 3300047322 Bacteria 4138
167 Ga0495687_051424 3300047443 Bacteria 1748
168 Ga0495679_000254 3300047446 Bacteria 44204
169 Ga0495686_0023380 3300047472 Bacteria 4077
170 Ga0495593_0001185 3300047673 Bacteria 15231
171 Ga0495602_0007926 3300048088 Bacteria 11100
172 Ga0495602_0044073 3300048088 Bacteria 4050
173 Ga0495626_0003577 3300048091 Bacteria 9909
174 Ga0495626_0022570 3300048091 Bacteria 3106
175 Ga0496100_0000124 3300048903 Bacteria 43738
176 Ga0496101_0000147 3300048904 Bacteria 60811
177 Ga0496102_0000057 3300048905 Bacteria 171634
178 Ga0496102_0010411 3300048905 Bacteria 8002
179 Ga0496103_0000142 3300048906 Bacteria 75004
180 Ga0496103_0005654 3300048906 Bacteria 7472
181 Ga0496104_0048089 3300048907 Bacteria 4021
182 Ga0496104_0081236 3300048907 Bacteria 3091
183 Ga0496104_0090257 3300048907 Bacteria 2928
184 Ga0496106_0060905 3300048909 Bacteria 2862
185 Ga0496107_0080843 3300048910 Unclassified 2370
186 Ga0496109_0029141 3300048912 Bacteria 4942
187 Ga0496112_0012830 3300048915 Bacteria 7711
188 Ga0496112_0074326 3300048915 Bacteria 3360
189 Ga0496117_0000118 3300048920 Bacteria 173803
190 Ga0496117_0001667 3300048920 Bacteria 31036
191 Ga0496117_0002775 3300048920 Bacteria 21453
192 Ga0496118_0000068 3300048921 Bacteria 204242
193 Ga0496118_0001578 3300048921 Bacteria 33807
194 Ga0496119_0016893 3300048922 Bacteria 5522
195 Ga0496121_0000725 3300048924 Bacteria 60959
196 Ga0496121_0002363 3300048924 Bacteria 29039
197 Ga0496121_0012695 3300048924 Bacteria 9141
198 Ga0496122_0006992 3300048925 Bacteria 12704
199 Ga0496123_0001223 3300048926 Bacteria 37435
200 Ga0496124_0012887 3300048927 Bacteria 8208
201 Ga0496125_0000506 3300048928 Bacteria 67688
202 Ga0496126_0007790 3300048929 Bacteria 11677
203 Ga0495678_024729 3300049459 Bacteria 2589
204 Ga0495682_0004841 3300049460 Bacteria 5682
205 Ga0501031_0122058 3300049568 Bacteria 1702
206 Ga0501032_0001746 3300049569 Bacteria 17173
207 Ga0501034_0034205 3300049571 Bacteria 5152
208 Ga0501036_0001349 3300049572 Bacteria 18824
209 Ga0501037_0034234 3300049573 Bacteria 3748
210 Ga0501038_0011582 3300049574 Bacteria 8046
211 Ga0501039_0000978 3300049575 Bacteria 20752
212 Ga0501046_0003140 3300049580 Bacteria 15255
213 Ga0501069_0000472 3300049585 Bacteria 18339
214 Ga0501070_0004700 3300049586 Bacteria 11698
215 Ga0501073_0002768 3300049589 Bacteria 13131
216 Ga0501074_0070780 3300049590 Bacteria 2507
217 Ga0501076_0238693 3300049592 Bacteria 1487
218 Ga0501080_0000935 3300049742 Bacteria 23863
219 Ga0501083_0002415 3300049744 Bacteria 12767
220 Ga0501035_0003278 3300049822 Bacteria 15517
221 nmdc:mga05p37_4038_c1 3300050507 Bacteria 17149
222 nmdc:mga08y16_362_c1 3300050511 Bacteria 40893
223 Ga0501084_0066039 3300054114 Bacteria 3027
224 2510282688 2510065053 Bacteria 5005518
225 2510283508 2510065053 Bacteria 5005518
226 2510292664 2510065055 Bacteria 5037935
227 2510295344 2510065055 Bacteria 5037935
228 2510311032 2510065058 Bacteria 5005894
229 2510311756 2510065058 Bacteria 5005894
230 2511318403 2511231015 Bacteria 6598026
231 2514048441 2513237166 Bacteria 10373764
232 2555669183 2554235341 Bacteria 6867980
233 2563057613 2562617112 Bacteria 10918404
234 2599357916 2599185160 Bacteria 6844013
235 2599361668 2599185161 Bacteria 6960462
236 2599367990 2599185162 Bacteria 6957254
237 2599374779 2599185163 Bacteria 6995158
238 2599383081 2599185164 Bacteria 6841688
239 2599389536 2599185165 Bacteria 6843250
240 2599393637 2599185166 Bacteria 6959206
241 2599405404 2599185168 Bacteria 6997636
242 2599464732 2599185181 Bacteria 6844519
243 2599468278 2599185182 Bacteria 6883168
244 2599493755 2599185186 Bacteria 6831633
245 2600217456 2599185356 Bacteria 6843884
246 2601777626 2600255313 Bacteria 6842543
247 2671098307 2667528171 Bacteria 6900659
248 2713473689 2711768613 Bacteria 11048459
249 2774128724 2773857672 Bacteria 4993178
250 2774129177 2773857672 Bacteria 4993178
251 2792833895 2791355137 Bacteria 9654227
252 2819703385 2818991464 Bacteria 6907494
253 2842325421 2842324504 Bacteria 9364110
254 2842349700 2842348783 Bacteria 9002918
255 2842455064 2842454564 Bacteria 8730687
256 2844669609 2844665904 Bacteria 6817974
257 2900640072 2900634093 Bacteria 10263517
258 2904622547 2904615490 Bacteria 10047340
259 2917072983 2917070673 Bacteria 6868303
260 2917833299 2917832318 Bacteria 5346010
261 2917834646 2917832318 Bacteria 5346010
262 2919126164 2919125081 Bacteria 5385106
263 2919130056 2919125081 Bacteria 5385106
264 2935359412 2935353572 Unclassified 6955622
265 2974299153 2974298342 Bacteria 4840922
266 2974302380 2974298342 Bacteria 4840922
267 2984500066 2984499530 Bacteria 5020881
268 2984501468 2984499530 Bacteria 5020881
269 2984506562 2984504281 Bacteria 5262371
270 2984507974 2984504281 Bacteria 5262371
271 637319530 637000220 Bacteria 7074893
272 642597066 642555112 Bacteria 8676562
273 642617226 642555113 Bacteria 8214658
274 8016729854 8016728285 Bacteria 5263933
275 8016731421 8016728285 Bacteria 5263933
276 8019775630 8019769354 Bacteria 6924660
277 8057799627 8057798959 Bacteria 6713499
278 Ga0496121_0093017
279 JGI25162J39368_1000050
280 JGI25163J39215_1000384
281 JGI25164J39214_1000025
282 JGI25165J46597_1000176
283 rootL2_10011935
284 JGI25160J50197_1000036
285 Ga0055535_1000322
286 Ga0055529_1000397
287 Ga0055524_1000003
288 Ga0065165_1000533
289 Ga0070683_100002858
290 Ga0070666_10013323
291 Ga0070680_100073945
292 Ga0070682_100036306
293 Ga0070660_100044581
294 Ga0070668_100021287
295 Ga0070669_100166125
296 Ga0070667_100074269
297 Ga0070708_100002957
298 Ga0070662_100008948
299 Ga0070706_100000296
300 Ga0070697_100000323
301 Ga0070665_100080354
302 Ga0068855_100002110
303 Ga0070664_100011038
304 Ga0068854_100022988
305 Ga0068856_100165402
306 Ga0068861_100043660
307 Ga0068851_10023096
308 Ga0068863_100136666
309 Ga0068860_100063833
310 Ga0081538_10022845
311 Ga0070717_10234518
312 Ga0075363_100035842
313 Ga0070716_100006044
314 Ga0070712_100000294
315 Ga0097621_100089805
316 Ga0068871_100023442
317 Ga0075428_100078662
318 Ga0075434_100009230
319 Ga0099826_10000002
320 Ga0099826_10098202
321 Ga0105251_10001703
322 Ga0105251_10001857
323 Ga0105244_10073457
324 Ga0105250_10000833
325 Ga0105240_10004838
326 Ga0105240_10114526
327 Ga0111539_10000802
328 Ga0111539_10090748
329 Ga0105245_10143029
330 Ga0105247_10051979
331 Ga0114129_10020387
332 Ga0105243_10000899
333 Ga0105243_10155329
334 Ga0105241_10033772
335 Ga0105242_10169910
336 Ga0105248_10101935
337 Ga0105237_10197536
338 Ga0157371_10000484
339 Ga0157371_10002539
340 Ga0157369_10005033
341 Ga0157369_10009853
342 Ga0157369_10037339
343 Ga0157374_10019013
344 Ga0157374_10023561
345 Ga0163162_10049336
346 Ga0163162_10170182
347 Ga0157372_10066925
348 Ga0157372_10069526
349 Ga0157372_10072117
350 Ga0163163_10040586
351 Ga0182008_10015391
352 Ga0157379_10001668
353 Ga0157379_10033535
354 Ga0183361_10021
355 Ga0213872_10000007
356 Ga0213872_10021523
357 Ga0209760_100033
358 Ga0209437_100002
359 Ga0209258_100025
360 Ga0209759_1000028
361 Ga0209759_1000693
362 Ga0209233_1000004
363 Ga0209455_1000112
364 Ga0209256_1000007
365 Ga0207426_1000014
366 Ga0207696_1000910
367 Ga0207713_1001502
368 Ga0207713_1024028
369 Ga0207699_10030020
370 Ga0207684_10006462
371 Ga0207707_10007054
372 Ga0207695_10000242
373 Ga0207693_10000785
374 Ga0207663_10003917
375 Ga0207657_10004616
376 Ga0207652_10009055
377 Ga0207687_10039305
378 Ga0207706_10004921
379 Ga0207709_10001036
380 Ga0207711_10003212
381 Ga0207661_10000561
382 Ga0207667_10001688
383 Ga0207658_10110066
384 Ga0207641_10029904
385 Ga0207674_10056122
386 Ga0207675_100065996
387 Ga0207683_10151441
388 Ga0209282_1000001
389 Ga0207428_10000948
390 Ga0265327_10000457
391 Ga0265316_10072913
392 Ga0307412_10021696
393 Ga0307412_10032615
394 Ga0373931_0016554
395 Ga0373927_0074725
396 Ga0373927_0117991
397 Ga0395898_0004404
398 Ga0395905_0000009
399 Ga0395905_0029978
400 Ga0400490_60616
401 Ga0400485_18728
402 Ga0400488_47385
403 Ga0400486_04403
404 Ga0400483_290837
405 Ga0400489_60328
406 Ga0400489_69096
407 Ga0436361_0163583
408 Ga0495590_0026649
409 Ga0495629_0000048
410 Ga0495638_0003175
411 Ga0495641_0025409
412 Ga0495651_0039407
413 Ga0495653_0000586
414 Ga0495580_0003320
415 Ga0495580_0004366
416 Ga0495580_0007545
417 Ga0495582_0005770
418 Ga0495605_0005090
419 Ga0495605_0015123
420 Ga0495664_0073593
421 Ga0495607_0002888
422 Ga0495583_0001755
423 Ga0495583_0020506
424 Ga0495620_0000007
425 Ga0495620_0028545
426 Ga0495630_0000996
427 Ga0495632_0001529
428 Ga0495643_0000789
429 Ga0495643_0023957
430 Ga0495665_0023346
431 Ga0495609_0003133
432 Ga0495633_0027304
433 Ga0495661_0057481
434 Ga0495599_0010641
435 Ga0495623_0001035
436 Ga0495646_0001843
437 Ga0495613_0028101
438 Ga0495589_0026479
439 Ga0495604_0001868
440 Ga0495674_0027815
441 Ga0495674_0062886
442 Ga0495672_0004236
443 Ga0495680_0033785
444 Ga0495687_051424
445 Ga0495679_000254
446 Ga0495686_0023380
447 Ga0495593_0001185
448 Ga0495602_0007926
449 Ga0495602_0044073
450 Ga0495626_0003577
451 Ga0495626_0022570
452 Ga0496100_0000124
453 Ga0496101_0000147
454 Ga0496102_0000057
455 Ga0496102_0010411
456 Ga0496103_0000142
457 Ga0496103_0005654
458 Ga0496104_0048089
459 Ga0496104_0081236
460 Ga0496104_0090257
461 Ga0496106_0060905
462 Ga0496107_0080843
463 Ga0496109_0029141
464 Ga0496112_0012830
465 Ga0496112_0074326
466 Ga0496117_0000118
467 Ga0496117_0001667
468 Ga0496117_0002775
469 Ga0496118_0000068
470 Ga0496118_0001578
471 Ga0496119_0016893
472 Ga0496121_0000725
473 Ga0496121_0002363
474 Ga0496121_0012695
475 Ga0496122_0006992
476 Ga0496123_0001223
477 Ga0496124_0012887
478 Ga0496125_0000506
479 Ga0496126_0007790
480 Ga0495678_024729
481 Ga0495682_0004841
482 Ga0501031_0122058
483 Ga0501032_0001746
484 Ga0501034_0034205
485 Ga0501036_0001349
486 Ga0501037_0034234
487 Ga0501038_0011582
488 Ga0501039_0000978
489 Ga0501046_0003140
490 Ga0501069_0000472
491 Ga0501070_0004700
492 Ga0501073_0002768
493 Ga0501074_0070780
494 Ga0501076_0238693
495 Ga0501080_0000935
496 Ga0501083_0002415
497 Ga0501035_0003278
498 nmdc:mga05p37_4038_c1
499 nmdc:mga08y16_362_c1
500 Ga0501084_0066039
501 2510282688
502 2510283508
503 2510292664
504 2510295344
505 2510311032
506 2510311756
507 2511318403
508 2514048441
509 2555669183
510 2563057613
511 2599357916
512 2599361668
513 2599367990
514 2599374779
515 2599383081
516 2599389536
517 2599393637
518 2599405404
519 2599464732
520 2599468278
521 2599493755
522 2600217456
523 2601777626
524 2671098307
525 2713473689
526 2774128724
527 2774129177
528 2792833895
529 2819703385
530 2842325421
531 2842349700
532 2842455064
533 2844669609
534 2900640072
535 2904622547
536 2917072983
537 2917833299
538 2917834646
539 2919126164
540 2919130056
541 2935359412
542 2974299153
543 2974302380
544 2984500066
545 2984501468
546 2984506562
547 2984507974
548 637319530
549 642597066
550 642617226
551 8016729854
552 8016731421
553 8019775630
554 8057799627

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00392

GntR

Bacterial regulatory proteins, gntR family

29

92

0.96

PF00155

Aminotran_1_2

Aminotransferase class I and II

203

481

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ham-assembly1.cif.gz_A-2 crystal structure of transcriptional antiterminator from listeria monocytogenes egd-e 0.9641 3 83
6sbs-assembly1.cif.gz_A ytra from sulfolobus acidocaldarius, a gntr-family transcription factor 0.9589 5 82
2wv0-assembly5.cif.gz_I crystal structure of the gntr-hutc family member yvoa from bacillus subtilis 0.9582 6 79
2du9-assembly1.cif.gz_A crystal structure of the transcriptional factor from c.glutamicum 0.9562 14 81
7pq9-assembly7.cif.gz_KKK crystal structure of bacillus clausii pdxr at 2.8 angstroms resolution 0.9504 2 79
ID Description Score Start End Superfamily
af_O06550_14_120_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 1.002 14 79 1.10.10.10
4hamA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9892 5 79 1.10.10.10
af_P0ACM5_16_95_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9798 10 79 1.10.10.10
2wv0D01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9662 14 79 1.10.10.10
af_Q2FWW6_10_126_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9605 14 83 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A349EU24-F1-model_v4 GntR family transcriptional regulator 0.9955 3 79 GO:0003677
GO:0003700
AF-A0A7X8C4W4-F1-model_v4 GntR family transcriptional regulator 0.9924 3 81 GO:0003677
GO:0003700
AF-A0A1E3A2V5-F1-model_v4 GntR family transcriptional regulator (HTH-type transcriptional repressor YtrA) 0.9924 3 79 GO:0003677
GO:0003700
AF-A0A2E8BEU3-F1-model_v4 GntR family transcriptional regulator 0.9906 3 79 GO:0003677
GO:0003700
AF-A0A2E0DXU2-F1-model_v4 GntR family transcriptional regulator 0.99 3 79 GO:0003677
GO:0003700

Map