F382272

General Info

Members Datasets Scaffolds Average Seq Length
278 209 237 669

Family's Representative Sequence

Representative Sequence 3300005563|Ga0068855_100057133|Ga0068855_1000571333
Length 755
Sequence MDQALDHLVNRAIAAQNQHQVGSLADGFLGERSGFARHRGRHKTRSEAAPCKRRNGTLENAGGVAPQRASGGVIDQDRLAKQRTSLYVTSVAHKIEVLRERLRHHEYLYHVLDAPEITDAEFDALIRELKALEAAHPELVTPDSPTQRVGGKPREGFVKVPHSSPMLSLDNALGEEELRAFDQRVHGLLKPDEACAYVAELKMDGVSMAVHYREGKLAQAVTRGDGSIGEDVTENARTIRSIPLQLKGSHANREARGEVVLNRKAFEKLNAEQEAHGARLFANPRNAAAGSLRVLDPAITASRQLEYFTYFLLDGGAPVHKTQWEALEALKNLGFKVNPNSRRFESIDTLAAFCKEWEEKRDSLPFEIDGVVVKVDSVEQQNRLGWTAKAPRWAIAYKFPARQEETLLESIEVNVGRTGAVTPWARLKPVNIGGVTVSRATLHNEDEIDRLGVQGGDRVLVERAGDVIPKVVRVVRQGEHRMPFRMPRHCPVCGGEIVRPEGEAISRCINTNCPARLKESVLHFAARGVMDIDGMGESLVSQLVDSGLVKNVADLYRLKLEDLVELERLGKKSAEKLLANIEVSRKQPLPRILNGLGIPFVGERTAQFLADAFADLDKIANADEEELQRAEEVGPKVSQSIQRFFHEKRNRDLIERLREEGLPFKYQAKRKAGGPLAGMTFVLTGTLPQMTREEAENLIEGAGGKVAGSVSRKTSYVVAGTDPGSKLDKAQALGVKVIDEGALRRLAATADERSG

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
3 2523533629 Kaistella palustris DSM 21579 Isolate Rhizosphere
4 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
5 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
6 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
7 2582581873 Chryseobacterium sp. OV259 Isolate Rhizosphere
8 2585428045 Chryseobacterium sp. OV705 Isolate Rhizosphere
9 2585428060 Chryseobacterium sp. OV715 Isolate Rhizosphere
10 2585428061 Chryseobacterium sp. CF356 Isolate Rhizosphere
11 2585428095 Chryseobacterium sp. YR005 Isolate Rhizosphere
12 2585428115 Chryseobacterium sp. YR561 Isolate Rhizosphere
13 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
14 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
15 2585428184 Chryseobacterium sp. YR480 Isolate Rhizosphere
16 2585428185 Chryseobacterium sp. YR459 Isolate Rhizosphere
17 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
18 2588253712 Chryseobacterium sp. OV279 Isolate Rhizosphere
19 2588254255 Chryseobacterium sp. YR221 Isolate Rhizosphere
20 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
21 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
22 2738541273 Elizabethkingia sp. YR214 Isolate Unclassified
23 2738543014 Elizabethkingia sp. YR191 Isolate Unclassified
24 2739367874 Chryseobacterium sp. T16E-39 Isolate Unclassified
25 2751185877 Chryseobacterium artocarpi UTM-3 Isolate Rhizosphere
26 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
27 2772190705 Chryseobacterium contaminans C-26 Isolate Rhizosphere
28 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
29 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
30 2842083920 Chryseobacterium lathyri KCTC 22544 Isolate Rhizosphere
31 2871720351 Chryseobacterium sp. KLBC 52 Isolate Nodule
32 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
33 2905999023 Chryseobacterium elymi KCTC 22547 Isolate Rhizosphere
34 2919097161 Chryseobacterium ginsenosidimutans 1394 Isolate Rhizosphere
35 2919399522 Chryseobacterium sp. 2987 Isolate Unclassified
36 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
37 2946019816 Chryseobacterium sp. W4I1 Isolate Rhizosphere
38 2977243572 Chryseobacterium sp. SORGH_AS 447 Isolate Unclassified
39 2984572630 Chryseobacterium sp. SORGH_AS909 Isolate Aerial Root
40 2993372514 Chryseobacterium sp. SLBN-27 Isolate Rhizosphere
41 2993480792 Chryseobacterium nepalense SLBN-92 Isolate Rhizosphere
42 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
43 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
44 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
45 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
46 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
47 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
48 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
49 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
50 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
51 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
52 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
53 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
54 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
55 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
56 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
57 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
58 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
59 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
60 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
61 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
62 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
63 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
64 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
65 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
66 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
67 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
68 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
69 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
70 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
71 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
72 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
73 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
74 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
75 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
76 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
77 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
78 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
79 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
80 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
81 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
82 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
83 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
84 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
85 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
86 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
87 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
88 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
89 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
90 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
91 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
92 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
93 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
94 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
95 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
96 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
97 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
98 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
99 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
100 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
101 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
102 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
103 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
104 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
105 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
106 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
107 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
108 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
109 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
110 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
111 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
112 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
113 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
114 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
118 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
119 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
122 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
123 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
124 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
125 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
126 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
127 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
128 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
129 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
130 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
131 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
132 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
133 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
134 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
135 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
136 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
137 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
138 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
139 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
140 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
141 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
142 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
143 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
144 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
145 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
146 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
147 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
148 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
149 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
150 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
151 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
152 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
153 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
154 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
155 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
156 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
157 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
158 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
159 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
160 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
161 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
162 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
163 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
164 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
165 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
166 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
167 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
168 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
169 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
170 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
171 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
172 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
173 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
174 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
175 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
176 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
177 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
178 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
179 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
180 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
181 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
182 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
183 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
184 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
185 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
186 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
187 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
188 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
189 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
190 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
191 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
192 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
193 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
194 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
195 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
196 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
197 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
198 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
199 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
200 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
201 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
202 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
203 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
204 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
205 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
206 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
207 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
208 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
209 646564506 Arcobacter nitrofigilis DSM 7299 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 85.25
Metatranscriptomes 0
Isolates 14.75

Biome Distribution

Category Percentage (%)
Aerial Root 0.36
Bulb 0
Endosphere 1.08
Nodule 0.36
Rhizoplane 1.08
Rhizosphere 87.41
Stem 0
Stem Tuber 0
Unclassified 9.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1346639 2162886007 Bacteria 3109
2 JGI24741J21665_1003097 3300001915 Bacteria 4090
3 rootH1_10011952 3300003323 Bacteria 17520
4 Ga0055534_1003759 3300003784 Bacteria 4671
5 Ga0065704_10070730 3300005289 Bacteria 16928
6 Ga0070658_10015146 3300005327 Bacteria 6172
7 Ga0070683_100000761 3300005329 Bacteria 23630
8 Ga0070683_100004782 3300005329 Bacteria 11208
9 Ga0068869_100009562 3300005334 Bacteria 6295
10 Ga0070680_100010434 3300005336 Bacteria 7163
11 Ga0070682_100000672 3300005337 Bacteria 20576
12 Ga0068868_100078803 3300005338 Bacteria 2638
13 Ga0070660_100037393 3300005339 Bacteria 3680
14 Ga0070671_100070244 3300005355 Bacteria 2921
15 Ga0070671_100087875 3300005355 Bacteria 2601
16 Ga0070703_10000518 3300005406 Bacteria 14875
17 Ga0070713_100009032 3300005436 Bacteria 7106
18 Ga0070711_100006845 3300005439 Bacteria 6900
19 Ga0070711_100045978 3300005439 Bacteria 2972
20 Ga0070708_100000347 3300005445 Bacteria 34980
21 Ga0070681_10004367 3300005458 Bacteria 13450
22 Ga0070681_10029269 3300005458 Bacteria 5530
23 Ga0068867_100059539 3300005459 Bacteria 2831
24 Ga0070698_100007417 3300005471 Bacteria 11867
25 Ga0070699_100000343 3300005518 Bacteria 45107
26 Ga0070699_100005316 3300005518 Bacteria 11297
27 Ga0070679_100026848 3300005530 Bacteria 5663
28 Ga0070679_100075075 3300005530 Bacteria 3371
29 Ga0070684_100010469 3300005535 Bacteria 7348
30 Ga0070697_100000177 3300005536 Bacteria 52281
31 Ga0070697_100000960 3300005536 Bacteria 21769
32 Ga0068853_100023783 3300005539 Bacteria 5133
33 Ga0068853_100030285 3300005539 Bacteria 4570
34 Ga0070695_100003173 3300005545 Bacteria 9589
35 Ga0070693_100037675 3300005547 Unclassified 2698
36 Ga0068855_100000800 3300005563 Bacteria 38947
37 Ga0068855_100057133 3300005563 Bacteria 4575
38 Ga0068855_100057203 3300005563 Bacteria 4571
39 Ga0068855_100103800 3300005563 Bacteria 3270
40 Ga0068857_100006802 3300005577 Bacteria 9844
41 Ga0068857_100134355 3300005577 Unclassified 2233
42 Ga0068854_100020250 3300005578 Bacteria 4498
43 Ga0068856_100056643 3300005614 Bacteria 3868
44 Ga0068852_100003540 3300005616 Bacteria 10930
45 Ga0068859_100023992 3300005617 Bacteria 6121
46 Ga0068858_100034475 3300005842 Bacteria 4695
47 Ga0068860_100028466 3300005843 Bacteria 5378
48 Ga0070717_10000800 3300006028 Bacteria 20687
49 Ga0070712_100000215 3300006175 Bacteria 32480
50 Ga0068871_100018988 3300006358 Bacteria 5239
51 Ga0068871_100059071 3300006358 Bacteria 3124
52 Ga0068871_100103729 3300006358 Bacteria 2384
53 Ga0075428_100006809 3300006844 Bacteria 12718
54 Ga0075431_100111892 3300006847 Bacteria 2818
55 Ga0075433_10079211 3300006852 Bacteria 2895
56 Ga0075434_100014638 3300006871 Bacteria 7503
57 Ga0075436_100005827 3300006914 Bacteria 8458
58 Ga0075436_100012922 3300006914 Bacteria 5725
59 Ga0097620_100023995 3300006931 Bacteria 6121
60 Ga0075435_100012708 3300007076 Bacteria 6237
61 Ga0099794_10000080 3300007265 Bacteria 35768
62 Ga0105244_10000376 3300009036 Bacteria 41530
63 Ga0105240_10003078 3300009093 Bacteria 26206
64 Ga0105240_10010810 3300009093 Bacteria 12785
65 Ga0105240_10023376 3300009093 Bacteria 8176
66 Ga0105240_10039729 3300009093 Bacteria 6023
67 Ga0105240_10062101 3300009093 Bacteria 4652
68 Ga0105245_10002575 3300009098 Bacteria 16326
69 Ga0105245_10003483 3300009098 Bacteria 14084
70 Ga0105245_10086461 3300009098 Bacteria 2876
71 Ga0114129_10120237 3300009147 Bacteria 3617
72 Ga0105243_10010875 3300009148 Bacteria 6885
73 Ga0105241_10001767 3300009174 Bacteria 16394
74 Ga0105242_10069088 3300009176 Unclassified 2925
75 Ga0105242_10103101 3300009176 Bacteria 2420
76 Ga0105248_10007158 3300009177 Bacteria 12238
77 Ga0105248_10066786 3300009177 Bacteria 4038
78 Ga0105248_10102601 3300009177 Bacteria 3224
79 Ga0105237_10002661 3300009545 Bacteria 21957
80 Ga0105237_10035432 3300009545 Bacteria 5050
81 Ga0105238_10017271 3300009551 Bacteria 7330
82 Ga0105238_10026536 3300009551 Bacteria 5906
83 Ga0105238_10034503 3300009551 Bacteria 5148
84 Ga0105249_10066263 3300009553 Bacteria 3324
85 Ga0105239_10044109 3300010375 Bacteria 4889
86 Ga0105246_10018632 3300011119 Bacteria 4426
87 Ga0157373_10000095 3300013100 Bacteria 73316
88 Ga0157371_10000012 3300013102 Bacteria 355318
89 Ga0157371_10035511 3300013102 Bacteria 3571
90 Ga0157370_10001831 3300013104 Bacteria 26198
91 Ga0157370_10006349 3300013104 Bacteria 13056
92 Ga0157370_10013479 3300013104 Bacteria 8419
93 Ga0157370_10022082 3300013104 Bacteria 6337
94 Ga0157370_10059084 3300013104 Bacteria 3644
95 Ga0157369_10002395 3300013105 Bacteria 22527
96 Ga0157369_10002402 3300013105 Bacteria 22497
97 Ga0157369_10004780 3300013105 Bacteria 15923
98 Ga0157369_10098379 3300013105 Bacteria 3120
99 Ga0157374_10020793 3300013296 Bacteria 5828
100 Ga0157378_10030257 3300013297 Bacteria 4784
101 Ga0163162_10056989 3300013306 Bacteria 3935
102 Ga0157375_10015422 3300013308 Bacteria 6839
103 Ga0163163_10017006 3300014325 Bacteria 6773
104 Ga0157379_10038353 3300014968 Bacteria 4275
105 Ga0163161_10005310 3300017792 Bacteria 8968
106 Ga0224572_1001190 3300024225 Bacteria 3714
107 Ga0228598_1000115 3300024227 Bacteria 13523
108 Ga0209675_1000271 3300025291 Bacteria 49636
109 Ga0207655_1000237 3300025728 Bacteria 91108
110 Ga0207647_10017512 3300025904 Bacteria 4870
111 Ga0207705_10008178 3300025909 Bacteria 7656
112 Ga0207684_10000081 3300025910 Bacteria 178619
113 Ga0207684_10000519 3300025910 Bacteria 47857
114 Ga0207707_10000358 3300025912 Bacteria 47947
115 Ga0207695_10000391 3300025913 Bacteria 98481
116 Ga0207695_10001641 3300025913 Bacteria 36134
117 Ga0207695_10009727 3300025913 Bacteria 11835
118 Ga0207671_10010329 3300025914 Bacteria 7711
119 Ga0207660_10010452 3300025917 Bacteria 6026
120 Ga0207657_10051033 3300025919 Bacteria 3596
121 Ga0207657_10094679 3300025919 Bacteria 2486
122 Ga0207652_10003701 3300025921 Bacteria 12551
123 Ga0207652_10056499 3300025921 Bacteria 3379
124 Ga0207646_10002622 3300025922 Bacteria 21121
125 Ga0207694_10003945 3300025924 Bacteria 11707
126 Ga0207694_10006692 3300025924 Bacteria 8758
127 Ga0207694_10020555 3300025924 Bacteria 4997
128 Ga0207694_10048917 3300025924 Unclassified 3272
129 Ga0207687_10005918 3300025927 Bacteria 8089
130 Ga0207687_10043819 3300025927 Bacteria 3085
131 Ga0207700_10010856 3300025928 Bacteria 5778
132 Ga0207709_10010128 3300025935 Bacteria 5192
133 Ga0207709_10013068 3300025935 Bacteria 4576
134 Ga0207711_10001007 3300025941 Bacteria 27032
135 Ga0207711_10051846 3300025941 Bacteria 3515
136 Ga0207689_10001186 3300025942 Bacteria 25050
137 Ga0207689_10026718 3300025942 Bacteria 4835
138 Ga0207661_10010039 3300025944 Bacteria 6802
139 Ga0207667_10012092 3300025949 Bacteria 9978
140 Ga0207667_10023014 3300025949 Bacteria 6867
141 Ga0207667_10034114 3300025949 Bacteria 5468
142 Ga0207651_10002348 3300025960 Bacteria 9027
143 Ga0207640_10052829 3300025981 Bacteria 2649
144 Ga0207703_10026194 3300026035 Bacteria 4588
145 Ga0207639_10009683 3300026041 Bacteria 6655
146 Ga0207639_10032485 3300026041 Bacteria 3842
147 Ga0207702_10003892 3300026078 Bacteria 13445
148 Ga0207702_10010746 3300026078 Bacteria 7643
149 Ga0207648_10036252 3300026089 Bacteria 4344
150 Ga0207674_10000241 3300026116 Bacteria 68328
151 Ga0207674_10001768 3300026116 Bacteria 27613
152 Ga0207698_10019404 3300026142 Bacteria 4654
153 Ga0265323_10011907 3300028653 Bacteria 3496
154 Ga0265338_10005381 3300028800 Bacteria 16726
155 Ga0265338_10017327 3300028800 Bacteria 7774
156 Ga0265320_10004352 3300031240 Bacteria 9292
157 Ga0265340_10001371 3300031247 Bacteria 13963
158 Ga0265316_10000520 3300031344 Bacteria 43462
159 Ga0265316_10002175 3300031344 Bacteria 20603
160 Ga0265316_10008794 3300031344 Bacteria 9331
161 Ga0265316_10019845 3300031344 Bacteria 5738
162 Ga0265313_10013259 3300031595 Bacteria 4959
163 Ga0265314_10014874 3300031711 Bacteria 6201
164 Ga0265342_10014971 3300031712 Bacteria 5124
165 Ga0307414_10000004 3300032004 Bacteria 472218
166 Ga0373935_0007133 3300035692 Bacteria 6672
167 Ga0373935_0010693 3300035692 Bacteria 5511
168 Ga0373927_0003081 3300035695 Bacteria 12076
169 Ga0373927_0003105 3300035695 Bacteria 12025
170 Ga0373933_0018268 3300035724 Bacteria 3942
171 Ga0373933_0076420 3300035724 Bacteria 2046
172 Ga0373937_0005737 3300036401 Bacteria 10663
173 Ga0373937_0056294 3300036401 Bacteria 3611
174 Ga0373937_0102744 3300036401 Bacteria 2654
175 Ga0373925_0000269 3300037068 Bacteria 54259
176 Ga0436365_0599334 3300039437 Bacteria 3620
177 Ga0451577_0000020 3300042876 Bacteria 477488
178 Ga0453683_0002303 3300044673 Bacteria 15017
179 Ga0453684_0000246 3300044712 Bacteria 233363
180 Ga0453684_0003182 3300044712 Bacteria 37655
181 Ga0451576_0000962 3300045051 Bacteria 53878
182 Ga0495580_0000904 3300046472 Bacteria 25856
183 Ga0495582_0002122 3300046473 Bacteria 11103
184 Ga0495596_0000598 3300046500 Bacteria 22659
185 Ga0495606_0009898 3300046507 Bacteria 7986
186 Ga0495652_0018762 3300046529 Bacteria 6165
187 Ga0495586_0022939 3300046535 Bacteria 3332
188 Ga0495587_0007050 3300046536 Bacteria 7295
189 Ga0495609_0000063 3300046538 Bacteria 135584
190 Ga0495684_0009870 3300047471 Bacteria 7368
191 Ga0495602_0003454 3300048088 Bacteria 16350
192 Ga0496104_0072745 3300048907 Bacteria 3269
193 Ga0496104_0158635 3300048907 Bacteria 2171
194 Ga0496112_0001851 3300048915 Bacteria 16638
195 Ga0496116_0000461 3300048919 Bacteria 56237
196 Ga0496117_0000285 3300048920 Bacteria 92381
197 Ga0496118_0001017 3300048921 Bacteria 43632
198 Ga0496118_0084906 3300048921 Bacteria 2207
199 Ga0496119_0000004 3300048922 Bacteria 536344
200 Ga0496122_0001046 3300048925 Bacteria 48484
201 Ga0496122_0003687 3300048925 Bacteria 19863
202 Ga0496122_0006329 3300048925 Bacteria 13629
203 Ga0496122_0008456 3300048925 Bacteria 11098
204 Ga0496123_0003109 3300048926 Bacteria 19034
205 Ga0496123_0005903 3300048926 Bacteria 12090
206 Ga0496124_0002837 3300048927 Bacteria 21916
207 Ga0496125_0002657 3300048928 Bacteria 22842
208 Ga0496125_0009282 3300048928 Bacteria 10148
209 Ga0496126_0001257 3300048929 Bacteria 40960
210 Ga0501031_0005134 3300049568 Bacteria 8529
211 Ga0501032_0000906 3300049569 Bacteria 24003
212 Ga0501033_0066739 3300049570 Bacteria 2645
213 Ga0501034_0011173 3300049571 Bacteria 9319
214 Ga0501036_0000076 3300049572 Bacteria 60845
215 Ga0501037_0004002 3300049573 Bacteria 10684
216 Ga0501038_0000318 3300049574 Bacteria 41311
217 Ga0501039_0008468 3300049575 Bacteria 7841
218 Ga0501043_0006186 3300049579 Bacteria 9616
219 Ga0501046_0008598 3300049580 Bacteria 8881
220 Ga0501047_0109457 3300049581 Bacteria 2645
221 Ga0501048_0003020 3300049582 Bacteria 12842
222 Ga0501068_0000626 3300049584 Bacteria 18042
223 Ga0501069_0001669 3300049585 Bacteria 11035
224 Ga0501072_0003735 3300049588 Bacteria 11491
225 Ga0501073_0011012 3300049589 Bacteria 6614
226 Ga0501079_0003753 3300049741 Bacteria 11213
227 Ga0501080_0000049 3300049742 Bacteria 76472
228 Ga0501083_0030747 3300049744 Bacteria 3686
229 Ga0501035_0016784 3300049822 Bacteria 6750
230 nmdc:mga05p37_156320_c1 3300050507 Bacteria 2786
231 nmdc:mga0n895_12851_c1 3300050512 Bacteria 7522
232 nmdc:mga0rr50_49553_c1 3300050513 Unclassified 3109
233 nmdc:mga08x19_5102_c1 3300050514 Bacteria 7765
234 nmdc:mga0a205_20331_c1 3300050515 Bacteria 6262
235 Ga0495619_0055351 3300053085 Bacteria 2627
236 Ga0500616_0000008 3300053153 Bacteria 785239
237 Ga0501084_0025351 3300054114 Bacteria 4946

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005458 Ga0070681_10029269 Ga0070681_100292693 618
2 3300005530 Ga0070679_100075075 Ga0070679_1000750752 618
3 3300025921 Ga0207652_10056499 Ga0207652_100564993 618
4 3300036401 Ga0373937_0056294 Ga0373937_0056294_1695_3572 620
5 3300009176 Ga0105242_10069088 Ga0105242_100690883 626
6 3300013104 Ga0157370_10013479 Ga0157370_100134794 629
7 3300042876 Ga0451577_0000020 Ga0451577_0000020_323899_325881 632
8 3300044673 Ga0453683_0002303 Ga0453683_0002303_11690_13672 632
9 3300044712 Ga0453684_0000246 Ga0453684_0000246_166252_168234 632
10 3300045051 Ga0451576_0000962 Ga0451576_0000962_45957_47939 632
11 iso_pu_bacteria 646564506 646813798 633
12 3300006358 Ga0068871_100059071 Ga0068871_1000590712 635
13 3300009098 Ga0105245_10003483 Ga0105245_100034839 635
14 3300013297 Ga0157378_10030257 Ga0157378_100302574 635
15 3300025927 Ga0207687_10043819 Ga0207687_100438193 635
16 3300005327 Ga0070658_10015146 Ga0070658_100151462 637
17 3300005563 Ga0068855_100057203 Ga0068855_1000572032 637
18 3300025909 Ga0207705_10008178 Ga0207705_100081784 637
19 3300009545 Ga0105237_10035432 Ga0105237_100354322 638
20 3300046529 Ga0495652_0018762 Ga0495652_0018762_3014_4948 638
21 3300048925 Ga0496122_0003687 Ga0496122_0003687_5326_7332 638
22 3300048926 Ga0496123_0005903 Ga0496123_0005903_9428_11434 638
23 3300053153 Ga0500616_0000008 Ga0500616_0000008_692942_694969 638
24 3300003784 Ga0055534_1003759 Ga0055534_10037592 639
25 3300025291 Ga0209675_1000271 Ga0209675_100027112 639
26 3300048928 Ga0496125_0002657 Ga0496125_0002657_3889_5892 639
27 3300009093 Ga0105240_10010810 Ga0105240_100108108 644
28 3300025913 Ga0207695_10009727 Ga0207695_100097276 644
29 3300046535 Ga0495586_0022939 Ga0495586_0022939_441_2384 644
30 3300009093 Ga0105240_10023376 Ga0105240_100233763 647
31 3300028800 Ga0265338_10005381 Ga0265338_100053816 650
32 3300049570 Ga0501033_0066739 Ga0501033_0066739_376_2334 650
33 3300049575 Ga0501039_0008468 Ga0501039_0008468_554_2512 650
34 3300049581 Ga0501047_0109457 Ga0501047_0109457_312_2270 650
35 3300049744 Ga0501083_0030747 Ga0501083_0030747_376_2334 650
36 3300054114 Ga0501084_0025351 Ga0501084_0025351_504_2462 650
37 3300005355 Ga0070671_100087875 Ga0070671_1000878753 652
38 3300025960 Ga0207651_10002348 Ga0207651_1000234810 652
39 3300035692 Ga0373935_0007133 Ga0373935_0007133_3562_5535 652
40 3300035695 Ga0373927_0003105 Ga0373927_0003105_6140_8113 652
41 3300037068 Ga0373925_0000269 Ga0373925_0000269_35268_37241 652
42 3300001915 JGI24741J21665_1003097 JGI24741J21665_10030971 653
43 3300003323 rootH1_10011952 rootH1_100119523 653
44 3300005337 Ga0070682_100000672 Ga0070682_10000067212 653
45 3300009036 Ga0105244_10000376 Ga0105244_1000037618 653
46 3300009147 Ga0114129_10120237 Ga0114129_101202373 653
47 3300009148 Ga0105243_10010875 Ga0105243_100108753 653
48 3300013100 Ga0157373_10000095 Ga0157373_1000009553 653
49 3300013102 Ga0157371_10035511 Ga0157371_100355112 653
50 3300013104 Ga0157370_10006349 Ga0157370_100063493 653
51 3300025728 Ga0207655_1000237 Ga0207655_100023772 653
52 3300025935 Ga0207709_10013068 Ga0207709_100130682 653
53 3300026089 Ga0207648_10036252 Ga0207648_100362523 653
54 3300032004 Ga0307414_10000004 Ga0307414_10000004252 653
55 3300046500 Ga0495596_0000598 Ga0495596_0000598_10860_12866 653
56 3300048919 Ga0496116_0000461 Ga0496116_0000461_14728_16731 653
57 3300048920 Ga0496117_0000285 Ga0496117_0000285_14791_16794 653
58 3300048921 Ga0496118_0001017 Ga0496118_0001017_26868_28871 653
59 3300048922 Ga0496119_0000004 Ga0496119_0000004_519917_521920 653
60 3300048925 Ga0496122_0001046 Ga0496122_0001046_14791_16794 653
61 3300048925 Ga0496122_0006329 Ga0496122_0006329_4667_6673 653
62 3300048925 Ga0496122_0008456 Ga0496122_0008456_4618_6624 653
63 3300048926 Ga0496123_0003109 Ga0496123_0003109_2367_4370 653
64 3300048927 Ga0496124_0002837 Ga0496124_0002837_14483_16486 653
65 3300048928 Ga0496125_0009282 Ga0496125_0009282_4129_6132 653
66 3300048929 Ga0496126_0001257 Ga0496126_0001257_84_2087 653
67 3300050507 nmdc:mga05p37_156320_c1 nmdc:mga05p37_156320_c1_241_2220 653
68 3300006175 Ga0070712_100000215 Ga0070712_10000021528 654
69 3300013105 Ga0157369_10002402 Ga0157369_1000240211 654
70 3300046507 Ga0495606_0009898 Ga0495606_0009898_922_2925 654
71 3300009176 Ga0105242_10103101 Ga0105242_101031012 655
72 3300048907 Ga0496104_0158635 Ga0496104_0158635_66_2117 656
73 3300005329 Ga0070683_100000761 Ga0070683_10000076112 657
74 3300005329 Ga0070683_100004782 Ga0070683_1000047826 657
75 3300005336 Ga0070680_100010434 Ga0070680_1000104345 657
76 3300005339 Ga0070660_100037393 Ga0070660_1000373932 657
77 3300005355 Ga0070671_100070244 Ga0070671_1000702441 657
78 3300005436 Ga0070713_100009032 Ga0070713_1000090323 657
79 3300005439 Ga0070711_100045978 Ga0070711_1000459782 657
80 3300005458 Ga0070681_10004367 Ga0070681_100043675 657
81 3300005459 Ga0068867_100059539 Ga0068867_1000595392 657
82 3300005530 Ga0070679_100026848 Ga0070679_1000268485 657
83 3300005535 Ga0070684_100010469 Ga0070684_1000104694 657
84 3300005539 Ga0068853_100023783 Ga0068853_1000237833 657
85 3300005539 Ga0068853_100030285 Ga0068853_1000302852 657
86 3300005547 Ga0070693_100037675 Ga0070693_1000376751 657
87 3300005563 Ga0068855_100000800 Ga0068855_10000080033 657
88 3300005577 Ga0068857_100006802 Ga0068857_1000068024 657
89 3300005577 Ga0068857_100134355 Ga0068857_1001343552 657
90 3300005578 Ga0068854_100020250 Ga0068854_1000202503 657
91 3300005614 Ga0068856_100056643 Ga0068856_1000566432 657
92 3300005616 Ga0068852_100003540 Ga0068852_1000035404 657
93 3300006358 Ga0068871_100018988 Ga0068871_1000189882 657
94 3300006358 Ga0068871_100103729 Ga0068871_1001037292 657
95 3300009093 Ga0105240_10003078 Ga0105240_100030785 657
96 3300009098 Ga0105245_10002575 Ga0105245_100025757 657
97 3300009177 Ga0105248_10007158 Ga0105248_1000715812 657
98 3300009177 Ga0105248_10102601 Ga0105248_101026012 657
99 3300009551 Ga0105238_10017271 Ga0105238_100172714 657
100 3300009551 Ga0105238_10026536 Ga0105238_100265364 657
101 3300009553 Ga0105249_10066263 Ga0105249_100662631 657
102 3300010375 Ga0105239_10044109 Ga0105239_100441093 657
103 3300011119 Ga0105246_10018632 Ga0105246_100186324 657
104 3300013104 Ga0157370_10001831 Ga0157370_1000183122 657
105 3300013104 Ga0157370_10059084 Ga0157370_100590843 657
106 3300013105 Ga0157369_10004780 Ga0157369_100047806 657
107 3300013105 Ga0157369_10098379 Ga0157369_100983791 657
108 3300013308 Ga0157375_10015422 Ga0157375_100154224 657
109 3300014325 Ga0163163_10017006 Ga0163163_100170063 657
110 3300025913 Ga0207695_10001641 Ga0207695_1000164112 657
111 3300025919 Ga0207657_10094679 Ga0207657_100946791 657
112 3300025921 Ga0207652_10003701 Ga0207652_100037016 657
113 3300025924 Ga0207694_10003945 Ga0207694_100039455 657
114 3300025924 Ga0207694_10006692 Ga0207694_100066927 657
115 3300025924 Ga0207694_10020555 Ga0207694_100205555 657
116 3300025924 Ga0207694_10048917 Ga0207694_100489172 657
117 3300025927 Ga0207687_10005918 Ga0207687_100059184 657
118 3300025928 Ga0207700_10010856 Ga0207700_100108562 657
119 3300025935 Ga0207709_10010128 Ga0207709_100101283 657
120 3300025941 Ga0207711_10001007 Ga0207711_1000100721 657
121 3300025941 Ga0207711_10051846 Ga0207711_100518463 657
122 3300025942 Ga0207689_10026718 Ga0207689_100267184 657
123 3300025949 Ga0207667_10012092 Ga0207667_100120925 657
124 3300025949 Ga0207667_10023014 Ga0207667_100230144 657
125 3300025949 Ga0207667_10034114 Ga0207667_100341145 657
126 3300025981 Ga0207640_10052829 Ga0207640_100528293 657
127 3300026041 Ga0207639_10032485 Ga0207639_100324853 657
128 3300026078 Ga0207702_10010746 Ga0207702_100107466 657
129 3300026116 Ga0207674_10001768 Ga0207674_1000176825 657
130 3300026142 Ga0207698_10019404 Ga0207698_100194043 657
131 3300028653 Ga0265323_10011907 Ga0265323_100119073 657
132 3300031344 Ga0265316_10008794 Ga0265316_100087944 657
133 3300031344 Ga0265316_10019845 Ga0265316_100198452 657
134 3300031595 Ga0265313_10013259 Ga0265313_100132593 657
135 3300035692 Ga0373935_0010693 Ga0373935_0010693_987_2975 657
136 3300035695 Ga0373927_0003081 Ga0373927_0003081_1431_3431 657
137 3300035724 Ga0373933_0018268 Ga0373933_0018268_387_2378 657
138 3300035724 Ga0373933_0076420 Ga0373933_0076420_30_2018 657
139 3300036401 Ga0373937_0005737 Ga0373937_0005737_7512_9518 657
140 3300036401 Ga0373937_0102744 Ga0373937_0102744_469_2457 657
141 3300046473 Ga0495582_0002122 Ga0495582_0002122_7192_9192 657
142 3300046536 Ga0495587_0007050 Ga0495587_0007050_1907_3901 657
143 3300047471 Ga0495684_0009870 Ga0495684_0009870_2456_4462 657
144 3300048088 Ga0495602_0003454 Ga0495602_0003454_8020_10014 657
145 3300031711 Ga0265314_10014874 Ga0265314_100148743 658
146 3300049568 Ga0501031_0005134 Ga0501031_0005134_4930_6930 658
147 3300049569 Ga0501032_0000906 Ga0501032_0000906_5709_7709 658
148 3300049571 Ga0501034_0011173 Ga0501034_0011173_3678_5678 658
149 3300049572 Ga0501036_0000076 Ga0501036_0000076_22520_24520 658
150 3300049573 Ga0501037_0004002 Ga0501037_0004002_3369_5369 658
151 3300049574 Ga0501038_0000318 Ga0501038_0000318_32313_34313 658
152 3300049579 Ga0501043_0006186 Ga0501043_0006186_6360_8360 658
153 3300049580 Ga0501046_0008598 Ga0501046_0008598_6698_8698 658
154 3300049582 Ga0501048_0003020 Ga0501048_0003020_9117_11117 658
155 3300049584 Ga0501068_0000626 Ga0501068_0000626_13578_15578 658
156 3300049585 Ga0501069_0001669 Ga0501069_0001669_4558_6558 658
157 3300049588 Ga0501072_0003735 Ga0501072_0003735_2671_4671 658
158 3300049589 Ga0501073_0011012 Ga0501073_0011012_3262_5262 658
159 3300049741 Ga0501079_0003753 Ga0501079_0003753_3198_5198 658
160 3300049742 Ga0501080_0000049 Ga0501080_0000049_70525_72525 658
161 3300049822 Ga0501035_0016784 Ga0501035_0016784_785_2785 658
162 3300005545 Ga0070695_100003173 Ga0070695_1000031736 659
163 3300005563 Ga0068855_100057133 Ga0068855_1000571333 659
164 3300006844 Ga0075428_100006809 Ga0075428_1000068093 659
165 3300006847 Ga0075431_100111892 Ga0075431_1001118922 659
166 3300006852 Ga0075433_10079211 Ga0075433_100792112 659
167 3300006914 Ga0075436_100012922 Ga0075436_1000129225 659
168 3300007076 Ga0075435_100012708 Ga0075435_1000127082 659
169 3300007265 Ga0099794_10000080 Ga0099794_1000008013 659
170 3300009093 Ga0105240_10039729 Ga0105240_100397293 659
171 3300009174 Ga0105241_10001767 Ga0105241_1000176712 659
172 3300009177 Ga0105248_10066786 Ga0105248_100667863 659
173 3300009545 Ga0105237_10002661 Ga0105237_1000266115 659
174 3300009551 Ga0105238_10034503 Ga0105238_100345034 659
175 3300013104 Ga0157370_10022082 Ga0157370_100220824 659
176 3300013105 Ga0157369_10002395 Ga0157369_1000239515 659
177 3300024225 Ga0224572_1001190 Ga0224572_10011903 659
178 3300024227 Ga0228598_1000115 Ga0228598_10001159 659
179 3300025912 Ga0207707_10000358 Ga0207707_1000035818 659
180 3300025913 Ga0207695_10000391 Ga0207695_1000039144 659
181 3300025914 Ga0207671_10010329 Ga0207671_100103295 659
182 3300025917 Ga0207660_10010452 Ga0207660_100104525 659
183 3300025919 Ga0207657_10051033 Ga0207657_100510332 659
184 3300025944 Ga0207661_10010039 Ga0207661_100100395 659
185 3300026041 Ga0207639_10009683 Ga0207639_100096835 659
186 3300026078 Ga0207702_10003892 Ga0207702_100038925 659
187 3300026116 Ga0207674_10000241 Ga0207674_1000024120 659
188 3300028800 Ga0265338_10017327 Ga0265338_100173275 659
189 3300031240 Ga0265320_10004352 Ga0265320_100043527 659
190 3300031247 Ga0265340_10001371 Ga0265340_1000137116 659
191 3300031344 Ga0265316_10000520 Ga0265316_1000052036 659
192 3300031344 Ga0265316_10002175 Ga0265316_1000217521 659
193 3300031712 Ga0265342_10014971 Ga0265342_100149713 659
194 3300048907 Ga0496104_0072745 Ga0496104_0072745_132_2138 659
195 3300050515 nmdc:mga0a205_20331_c1 nmdc:mga0a205_20331_c1_184_2190 659
196 3300053085 Ga0495619_0055351 Ga0495619_0055351_295_2298 659
197 3300005334 Ga0068869_100009562 Ga0068869_1000095622 660
198 3300005338 Ga0068868_100078803 Ga0068868_1000788032 660
199 3300005406 Ga0070703_10000518 Ga0070703_100005183 660
200 3300005563 Ga0068855_100103800 Ga0068855_1001038002 660
201 3300005617 Ga0068859_100023992 Ga0068859_1000239922 660
202 3300005842 Ga0068858_100034475 Ga0068858_1000344752 660
203 3300005843 Ga0068860_100028466 Ga0068860_1000284662 660
204 3300006931 Ga0097620_100023995 Ga0097620_1000239952 660
205 3300013296 Ga0157374_10020793 Ga0157374_100207932 660
206 3300013306 Ga0163162_10056989 Ga0163162_100569893 660
207 3300014968 Ga0157379_10038353 Ga0157379_100383532 660
208 3300025904 Ga0207647_10017512 Ga0207647_100175123 660
209 3300025942 Ga0207689_10001186 Ga0207689_1000118623 660
210 3300026035 Ga0207703_10026194 Ga0207703_100261942 660
211 3300039437 Ga0436365_0599334 Ga0436365_0599334_712_2709 660
212 3300044712 Ga0453684_0003182 Ga0453684_0003182_32728_34803 660
213 3300048915 Ga0496112_0001851 Ga0496112_0001851_8848_10863 660
214 3300005439 Ga0070711_100006845 Ga0070711_1000068451 661
215 3300005445 Ga0070708_100000347 Ga0070708_10000034727 661
216 3300005471 Ga0070698_100007417 Ga0070698_1000074176 661
217 3300005518 Ga0070699_100000343 Ga0070699_10000034349 661
218 3300005518 Ga0070699_100005316 Ga0070699_1000053164 661
219 3300005536 Ga0070697_100000177 Ga0070697_1000001773 661
220 3300005536 Ga0070697_100000960 Ga0070697_1000009606 661
221 3300006028 Ga0070717_10000800 Ga0070717_100008004 661
222 3300006871 Ga0075434_100014638 Ga0075434_1000146381 661
223 3300006914 Ga0075436_100005827 Ga0075436_1000058278 661
224 3300009093 Ga0105240_10062101 Ga0105240_100621013 661
225 3300009098 Ga0105245_10086461 Ga0105245_100864611 661
226 3300025910 Ga0207684_10000081 Ga0207684_10000081118 661
227 3300025910 Ga0207684_10000519 Ga0207684_1000051938 661
228 3300025922 Ga0207646_10002622 Ga0207646_100026223 661
229 3300046472 Ga0495580_0000904 Ga0495580_0000904_4497_6518 661
230 3300050512 nmdc:mga0n895_12851_c1 nmdc:mga0n895_12851_c1_174_2195 661
231 3300050513 nmdc:mga0rr50_49553_c1 nmdc:mga0rr50_49553_c1_772_2793 661
232 3300050514 nmdc:mga08x19_5102_c1 nmdc:mga08x19_5102_c1_4830_6878 661
233 iso_pu_bacteria 2511231000 2511231995 662
234 iso_pu_bacteria 2523533629 2524007000 662
235 iso_pu_bacteria 2582581281 2585156063 662
236 iso_pu_bacteria 2582581282 2585160013 662
237 iso_pu_bacteria 2585428045 2587678106 662
238 iso_pu_bacteria 2585428060 2587749958 662
239 iso_pu_bacteria 2585428061 2587752882 662
240 iso_pu_bacteria 2585428095 2587867561 662
241 iso_pu_bacteria 2585428115 2587942218 662
242 iso_pu_bacteria 2585428187 2588235076 662
243 iso_pu_bacteria 2588253712 2588445214 662
244 iso_pu_bacteria 2588254255 2590602728 662
245 iso_pu_bacteria 2588254257 2590610911 662
246 iso_pu_bacteria 2728369107 2729202724 662
247 iso_pu_bacteria 2739367874 2740061033 662
248 iso_pu_bacteria 2751185877 2753671573 662
249 iso_pu_bacteria 2772190705 2772605853 662
250 iso_pu_bacteria 2775506739 2775673786 662
251 iso_pu_bacteria 2816332188 2816871790 662
252 iso_pu_bacteria 2842083920 2842085585 662
253 iso_pu_bacteria 2871720351 2871722977 662
254 iso_pu_bacteria 2889290771 2889293159 662
255 iso_pu_bacteria 2905999023 2906001280 662
256 iso_pu_bacteria 2919097161 2919100770 662
257 iso_pu_bacteria 2919399522 2919401205 662
258 iso_pu_bacteria 2945924605 2945928326 662
259 iso_pu_bacteria 2946019816 2946020226 662
260 iso_pu_bacteria 2977243572 2977247140 662
261 iso_pu_bacteria 2984572630 2984573018 662
262 iso_pu_bacteria 2738541273 2738700860 663
263 iso_pu_bacteria 2738543014 2739254609 663
264 3300017792 Ga0163161_10005310 Ga0163161_100053104 666
265 3300046538 Ga0495609_0000063 Ga0495609_0000063_116902_118905 666
266 3300048921 Ga0496118_0084906 Ga0496118_0084906_40_2046 666
267 iso_pu_bacteria 2582581278 2585145199 666
268 iso_pu_bacteria 2582581873 2585426525 666
269 iso_pu_bacteria 2585428182 2588209353 666
270 iso_pu_bacteria 2585428183 2588217025 666
271 iso_pu_bacteria 2585428184 2588217399 666
272 iso_pu_bacteria 2585428185 2588222140 666
273 iso_pu_bacteria 2765235839 2765576332 666
274 iso_pu_bacteria 2993372514 2993372568 666
275 iso_pu_bacteria 2993480792 2993483341 666
276 2162886007 SwRhRL2b_contig_1346639 SwRhRL2b_0717.00002720 667
277 3300005289 Ga0065704_10070730 Ga0065704_100707307 667
278 3300013102 Ga0157371_10000012 Ga0157371_10000012137 667

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03119

DNA_ligase_ZBD

NAD-dependent DNA ligase C4 zinc finger domain

489

515

0.99

PF01653

DNA_ligase_aden

NAD-dependent DNA ligase adenylation domain

154

402

0.98

PF12826

HHH_2

Helix-hairpin-helix motif

591

654

0.98

PF03120

DNA_ligase_OB

NAD-dependent DNA ligase OB-fold domain

405

482

0.96

PF00533

BRCT

BRCA1 C Terminus (BRCT) domain

671

746

0.94

PF14520

HHH_5

Helix-hairpin-helix domain

594

647

0.94

PF14520

HHH_5

Helix-hairpin-helix domain

526

582

0.93

PF22745

Nlig-Ia

DNA ligase-like, N-terminal NAD+-binding domain

90

147

0.93

PF12738

PTCB-BRCT

twin BRCT domain

679

740

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
7u1a-assembly1.cif.gz_A rfc:pcna bound to dsdna with a ssdna gap of six nucleotides 0.9434 591 667
7u19-assembly1.cif.gz_A rfc:pcna bound to nicked dna 0.9339 591 667
8dr3-assembly1.cif.gz_A closed state of rfc:pcna bound to a 3' ss/dsdna junction (dna2) with ntd 0.9291 591 666
8dr5-assembly1.cif.gz_A open state of rfc:pcna bound to a 3' ss/dsdna junction (dna2) with ntd 0.9254 591 667
1x2i-assembly1.cif.gz_B crystal structure of archaeal xpf/mus81 homolog, hef from pyrococcus furiosus, helix-hairpin-helix domain 0.9222 513 561
ID Description Score Start End Superfamily
af_P9WNV1_524_596_1.10.150.20 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9851 504 575 1.10.150.20
af_Q2G1Y0_587_666_3.40.50.10190 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;BRCT domain 0.9735 594 664 3.40.50.10190
af_Q2G1Y0_497_576_1.10.150.20 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9722 502 580 1.10.150.20
1dgsB06 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9717 505 583 1.10.150.20
4ucuA01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9708 4 61 1.10.287.610
ID Description Score Start End GO Terms
AF-A0A090QY98-F1-model_v4 DNA ligase (EC 6.5.1.2) 0.9888 93 247 GO:0003911
AF-A0A529UDK6-F1-model_v4 deleted 0.9765 122 308
AF-A0A6P1B1C4-F1-model_v4 deleted 0.9753 71 217
AF-A0A6B3E7W9-F1-model_v4 NAD-dependent DNA ligase LigA 0.9739 594 666 GO:0016874
AF-A0A838S9B8-F1-model_v4 NAD-dependent DNA ligase LigA 0.973 591 666 GO:0016874

Feature Viewer

pLDDT pTM Quality
89.05 0.63 Medium
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Predicted Structure (AlphaFold2)

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