F384103

General Info

Members Datasets Scaffolds Average Seq Length
281 164 562 262

Family's Representative Sequence

Representative Sequence 3300005340|Ga0070689_100016296|Ga0070689_1000162964
Length 295
Sequence VSIRVHSWFPPRVDALKFKLTIAYDGTQYEGWQVQKTGVGVQQKVEEALAKLFTSAPRLHSSSRTDTGVHAFGMVAHVEIFRAEFKMPVRKLVLALNAWLPEDIRVMTATRCRADFHARFDAIGKQYRYFVWNQTSMNPLLRQQAWHVPRALDLGSMWAAAKLFLGKHDFKSFAGTRDYEVESTVRTLTRCDVKRNGPLLTFVIEGDGFLYKMCRGIVGTLVQVGQGKFARDEISRMLARKDRRAAGMTAPAHGLVLWKVFYGKIPRAKGQGPKKHQTSIPQHKSLRNREALGNG

Samples

Sample ID Description Type Environment
1 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
2 3300001977 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
16 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
21 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
24 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
27 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
30 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
31 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
32 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
35 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
36 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
37 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
41 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
42 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
50 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
56 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
76 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
77 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
78 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
79 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
80 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
81 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
82 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
83 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
84 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
85 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
86 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
87 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
88 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
89 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
90 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
91 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
92 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
93 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
94 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
95 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
96 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
97 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
98 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
99 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
100 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
101 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
102 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
103 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
104 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
105 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
106 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
107 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
108 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
109 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
110 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
111 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
112 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
113 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
114 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
115 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
116 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
117 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
118 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
119 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
120 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
121 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
122 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
123 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
124 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
125 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
126 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
127 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
128 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
129 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
130 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
131 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
132 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
133 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
134 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
135 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
136 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
137 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
138 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
139 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
140 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
141 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
142 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
143 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
144 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
145 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
146 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
147 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
151 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
152 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
153 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
154 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
155 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
156 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
157 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
158 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
159 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
160 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
161 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
162 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
163 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
164 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.07
Nodule 0
Rhizoplane 0.36
Rhizosphere 96.44
Stem 0
Stem Tuber 0
Unclassified 12.1

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070689_100016296 3300005340 Bacteria 5437
2 JGI24746J21847_1001788 3300001977 Bacteria 3444
3 rootH2_10023276 3300003320 Bacteria 21155
4 rootH2_10119522 3300003320 Unclassified 2907
5 rootH1_10053559 3300003323 Bacteria 1890
6 Ga0070676_10057489 3300005328 Bacteria 2302
7 Ga0070683_100404317 3300005329 Unclassified 1302
8 Ga0070690_100003426 3300005330 Bacteria 8675
9 Ga0070690_100285651 3300005330 Bacteria 1178
10 Ga0070666_10078170 3300005335 Bacteria 2258
11 Ga0070689_100053379 3300005340 Bacteria 3128
12 Ga0070689_100456407 3300005340 Bacteria 1088
13 Ga0070661_100000937 3300005344 Bacteria 20872
14 Ga0070688_100245834 3300005365 Unclassified 1272
15 Ga0070714_100061587 3300005435 Bacteria 3224
16 Ga0070713_100048667 3300005436 Bacteria 3492
17 Ga0070713_100133165 3300005436 Unclassified 2194
18 Ga0070711_100009928 3300005439 Bacteria 5871
19 Ga0070700_100448359 3300005441 Unclassified 981
20 Ga0070694_100025754 3300005444 Bacteria 3807
21 Ga0070708_100000594 3300005445 Bacteria 27192
22 Ga0070708_100040333 3300005445 Bacteria 4088
23 Ga0068867_100000037 3300005459 Bacteria 80736
24 Ga0070706_100000681 3300005467 Bacteria 38474
25 Ga0070707_100000945 3300005468 Bacteria 28847
26 Ga0070698_100059634 3300005471 Bacteria 3853
27 Ga0070698_100471163 3300005471 Bacteria 1192
28 Ga0070699_100020450 3300005518 Bacteria 5709
29 Ga0070672_100002573 3300005543 Bacteria 11571
30 Ga0070686_100203608 3300005544 Bacteria 1420
31 Ga0070696_100397089 3300005546 Bacteria 1078
32 Ga0068855_100069607 3300005563 Bacteria 4095
33 Ga0068855_100172638 3300005563 Bacteria 2448
34 Ga0070664_100005409 3300005564 Bacteria 10252
35 Ga0068857_100019671 3300005577 Bacteria 5931
36 Ga0068857_100077224 3300005577 Bacteria 2971
37 Ga0068856_100000211 3300005614 Bacteria 63015
38 Ga0068856_100019888 3300005614 Bacteria 6517
39 Ga0068856_100077870 3300005614 Bacteria 3286
40 Ga0068859_100020643 3300005617 Bacteria 6611
41 Ga0068859_100149101 3300005617 Bacteria 2415
42 Ga0068859_100995998 3300005617 Bacteria 920
43 Ga0068864_100070532 3300005618 Bacteria 3041
44 Ga0068863_100086850 3300005841 Bacteria 2964
45 Ga0068858_100107249 3300005842 Bacteria 2607
46 Ga0068858_100455409 3300005842 Unclassified 1233
47 Ga0068860_100425961 3300005843 Bacteria 1316
48 Ga0068862_100960430 3300005844 Bacteria 843
49 Ga0081455_10044534 3300005937 Bacteria 3869
50 Ga0081455_10276515 3300005937 Bacteria 1215
51 Ga0075367_10142846 3300006178 Bacteria 1483
52 Ga0097621_100128795 3300006237 Bacteria 2152
53 Ga0068871_100534401 3300006358 Bacteria 1060
54 Ga0075428_100000451 3300006844 Bacteria 41092
55 Ga0075428_100213036 3300006844 Unclassified 2088
56 Ga0075428_100887276 3300006844 Unclassified 946
57 Ga0075431_100066765 3300006847 Unclassified 3714
58 Ga0075433_10690371 3300006852 Unclassified 894
59 Ga0097620_100020643 3300006931 Bacteria 6611
60 Ga0097620_100149098 3300006931 Bacteria 2415
61 Ga0097620_100995978 3300006931 Bacteria 920
62 Ga0099794_10090215 3300007265 Bacteria 1520
63 Ga0105240_10016955 3300009093 Bacteria 9841
64 Ga0111539_10003669 3300009094 Bacteria 20218
65 Ga0111539_10071315 3300009094 Bacteria 4099
66 Ga0111539_10103608 3300009094 Bacteria 3339
67 Ga0105245_10334426 3300009098 Unclassified 1496
68 Ga0114129_11073984 3300009147 Unclassified 1009
69 Ga0105243_10000066 3300009148 Bacteria 124400
70 Ga0105242_10017048 3300009176 Bacteria 5655
71 Ga0105248_10078608 3300009177 Bacteria 3708
72 Ga0105248_10571479 3300009177 Bacteria 1276
73 Ga0157370_10208235 3300013104 Bacteria 1813
74 Ga0157374_10030331 3300013296 Bacteria 4908
75 Ga0157375_10000051 3300013308 Bacteria 130143
76 Ga0163163_10138467 3300014325 Bacteria 2476
77 Ga0157376_10128726 3300014969 Bacteria 2256
78 Ga0207684_10000182 3300025910 Bacteria 100957
79 Ga0207695_10097857 3300025913 Bacteria 2934
80 Ga0207663_10006720 3300025916 Bacteria 5913
81 Ga0207649_10004177 3300025920 Bacteria 7867
82 Ga0207646_10026667 3300025922 Bacteria 5270
83 Ga0207694_10067883 3300025924 Bacteria 2784
84 Ga0207687_10075875 3300025927 Bacteria 2413
85 Ga0207664_10028504 3300025929 Bacteria 4244
86 Ga0207709_10000115 3300025935 Bacteria 124385
87 Ga0207670_10081664 3300025936 Bacteria 2263
88 Ga0207670_10208228 3300025936 Bacteria 1490
89 Ga0207691_10008949 3300025940 Bacteria 9608
90 Ga0207711_10049629 3300025941 Bacteria 3593
91 Ga0207679_10030157 3300025945 Bacteria 3785
92 Ga0207667_10062134 3300025949 Bacteria 3906
93 Ga0207703_10334107 3300026035 Bacteria 1391
94 Ga0207702_10002640 3300026078 Bacteria 16839
95 Ga0207641_10044446 3300026088 Bacteria 3736
96 Ga0207641_10143676 3300026088 Unclassified 2156
97 Ga0207641_10245012 3300026088 Bacteria 1672
98 Ga0207648_10000012 3300026089 Bacteria 176268
99 Ga0207674_10027996 3300026116 Bacteria 5955
100 Ga0207428_10193355 3300027907 Bacteria 1533
101 Ga0265337_1001841 3300028556 Bacteria 10151
102 Ga0265337_1010480 3300028556 Bacteria 3245
103 Ga0265337_1031523 3300028556 Bacteria 1574
104 Ga0265319_1000007 3300028563 Bacteria 217194
105 Ga0265319_1005967 3300028563 Bacteria 5727
106 Ga0265319_1021976 3300028563 Bacteria 2334
107 Ga0265334_10012288 3300028573 Bacteria 3599
108 Ga0265334_10058035 3300028573 Bacteria 1465
109 Ga0265336_10008269 3300028666 Bacteria 3659
110 Ga0265336_10023081 3300028666 Bacteria 1976
111 Ga0265338_10000040 3300028800 Bacteria 232041
112 Ga0265338_10000064 3300028800 Bacteria 190219
113 Ga0265338_10001028 3300028800 Bacteria 46692
114 Ga0265338_10001283 3300028800 Bacteria 41225
115 Ga0265338_10001719 3300028800 Bacteria 34724
116 Ga0265338_10002614 3300028800 Bacteria 26592
117 Ga0265338_10004514 3300028800 Bacteria 18770
118 Ga0265338_10004731 3300028800 Bacteria 18212
119 Ga0265338_10011330 3300028800 Bacteria 10316
120 Ga0265338_10012629 3300028800 Bacteria 9617
121 Ga0265338_10022973 3300028800 Bacteria 6431
122 Ga0265338_10025662 3300028800 Bacteria 5973
123 Ga0265338_10027816 3300028800 Bacteria 5660
124 Ga0265338_10069264 3300028800 Bacteria 3032
125 Ga0265338_10121782 3300028800 Bacteria 2078
126 Ga0265338_10176313 3300028800 Bacteria 1634
127 Ga0265338_10361334 3300028800 Unclassified 1042
128 Ga0265324_10000392 3300029957 Bacteria 31749
129 Ga0265324_10002166 3300029957 Bacteria 10299
130 Ga0265324_10006066 3300029957 Bacteria 5106
131 Ga0265324_10041326 3300029957 Bacteria 1596
132 Ga0265324_10080863 3300029957 Unclassified 1105
133 Ga0265332_10091819 3300031238 Bacteria 1283
134 Ga0265320_10000617 3300031240 Bacteria 27228
135 Ga0265320_10016697 3300031240 Bacteria 4107
136 Ga0265320_10021476 3300031240 Bacteria 3470
137 Ga0265320_10079354 3300031240 Unclassified 1534
138 Ga0265325_10017890 3300031241 Bacteria 3936
139 Ga0265325_10106330 3300031241 Unclassified 1368
140 Ga0265329_10004437 3300031242 Bacteria 5832
141 Ga0265340_10059537 3300031247 Bacteria 1832
142 Ga0265340_10062123 3300031247 Bacteria 1785
143 Ga0265339_10020732 3300031249 Bacteria 3836
144 Ga0265339_10093748 3300031249 Bacteria 1570
145 Ga0265339_10111675 3300031249 Unclassified 1413
146 Ga0265331_10050200 3300031250 Bacteria 2001
147 Ga0265327_10001104 3300031251 Bacteria 37392
148 Ga0265327_10001576 3300031251 Bacteria 27857
149 Ga0265327_10003420 3300031251 Bacteria 15188
150 Ga0265327_10134330 3300031251 Bacteria 1161
151 Ga0265316_10058108 3300031344 Bacteria 3015
152 Ga0265316_10061651 3300031344 Unclassified 2912
153 Ga0265316_10072025 3300031344 Unclassified 2663
154 Ga0265316_10172203 3300031344 Bacteria 1614
155 Ga0307408_100001117 3300031548 Bacteria 20439
156 Ga0265313_10012326 3300031595 Bacteria 5229
157 Ga0316579_10097969 3300031691 Unclassified 1403
158 Ga0265314_10000453 3300031711 Bacteria 54843
159 Ga0265314_10027600 3300031711 Bacteria 4250
160 Ga0265314_10044860 3300031711 Unclassified 3130
161 Ga0265314_10127221 3300031711 Bacteria 1594
162 Ga0307410_10287453 3300031852 Bacteria 1293
163 Ga0307406_10022088 3300031901 Bacteria 3772
164 Ga0307409_100002396 3300031995 Bacteria 9776
165 Ga0307416_100451821 3300032002 Bacteria 1338
166 Ga0307414_10270136 3300032004 Bacteria 1423
167 Ga0373928_0000296 3300035084 Bacteria 9880
168 Ga0373944_0000453 3300035089 Bacteria 9536
169 Ga0373932_0000001 3300035112 Bacteria 1459067
170 Ga0373945_0001936 3300035116 Bacteria 6431
171 Ga0373954_0097802 3300035118 Bacteria 1414
172 Ga0373943_0055670 3300035170 Bacteria 1960
173 Ga0373955_0295781 3300035172 Bacteria 976
174 Ga0373962_0000005 3300035242 Bacteria 63923
175 Ga0373931_0000008 3300035691 Bacteria 362269
176 Ga0373927_0085045 3300035695 Bacteria 2052
177 Ga0373927_0144922 3300035695 Bacteria 1554
178 Ga0373927_0318154 3300035695 Bacteria 1025
179 Ga0373947_0139455 3300035725 Unclassified 1554
180 Ga0373937_0074387 3300036401 Bacteria 3135
181 Ga0316582_0006998 3300036647 Bacteria 5976
182 Ga0316582_0077397 3300036647 Bacteria 2165
183 Ga0316582_0280311 3300036647 Unclassified 1144
184 Ga0316584_0207641 3300036712 Bacteria 1443
185 Ga0373925_0000192 3300037068 Bacteria 66343
186 Ga0400489_29436 3300039093 Bacteria 2579
187 Ga0451577_0002923 3300042876 Bacteria 19591
188 Ga0451577_0003402 3300042876 Bacteria 17770
189 Ga0451577_0053553 3300042876 Bacteria 3602
190 Ga0451577_0058038 3300042876 Bacteria 3450
191 Ga0451577_0243246 3300042876 Bacteria 1628
192 Ga0453684_0002874 3300044712 Bacteria 40400
193 Ga0453684_0010752 3300044712 Bacteria 15551
194 Ga0453684_0049436 3300044712 Bacteria 5546
195 Ga0453684_0089582 3300044712 Bacteria 3804
196 Ga0453684_0148422 3300044712 Bacteria 2790
197 Ga0453684_0936659 3300044712 Viruses 925
198 Ga0451576_0023010 3300045051 Bacteria 6754
199 Ga0451576_0092987 3300045051 Bacteria 3136
200 Ga0451576_0126311 3300045051 Bacteria 2665
201 Ga0451576_0139955 3300045051 Unclassified 2524
202 Ga0451576_0200904 3300045051 Bacteria 2082
203 Ga0451576_0200949 3300045051 Bacteria 2082
204 Ga0451576_0382075 3300045051 Bacteria 1476
205 Ga0451576_0643462 3300045051 Unclassified 1114
206 Ga0451576_0701701 3300045051 Bacteria 1063
207 Ga0495592_0000151 3300046454 Bacteria 60491
208 Ga0495592_0076266 3300046454 Bacteria 2433
209 Ga0495592_0214136 3300046454 Bacteria 1292
210 Ga0495651_0037247 3300046462 Unclassified 3787
211 Ga0495662_0017638 3300046476 Bacteria 3456
212 Ga0495664_0014101 3300046477 Bacteria 4528
213 Ga0495618_0000860 3300046514 Bacteria 21026
214 Ga0495628_0000092 3300046516 Bacteria 71184
215 Ga0495628_0083575 3300046516 Bacteria 2479
216 Ga0495628_0286027 3300046516 Bacteria 1223
217 Ga0495630_0000321 3300046517 Bacteria 38295
218 Ga0495630_0004491 3300046517 Bacteria 9780
219 Ga0495630_0014074 3300046517 Bacteria 5822
220 Ga0495630_0097807 3300046517 Viruses 2220
221 Ga0495630_0215712 3300046517 Bacteria 1465
222 Ga0495630_0246208 3300046517 Bacteria 1366
223 Ga0495666_0012770 3300046526 Bacteria 4187
224 Ga0495666_0014348 3300046526 Bacteria 3946
225 Ga0495666_0037290 3300046526 Unclassified 2365
226 Ga0495652_0024142 3300046529 Bacteria 5384
227 Ga0495652_0348861 3300046529 Bacteria 1061
228 Ga0495640_0156814 3300046533 Unclassified 1461
229 Ga0495640_0194346 3300046533 Bacteria 1288
230 Ga0495586_0000008 3300046535 Bacteria 148781
231 Ga0495586_0000824 3300046535 Bacteria 17824
232 Ga0495586_0002149 3300046535 Bacteria 10703
233 Ga0495645_0005838 3300046543 Bacteria 8496
234 Ga0495622_0079726 3300046557 Bacteria 1507
235 Ga0495667_0101904 3300046559 Bacteria 1857
236 Ga0495634_0049218 3300046642 Bacteria 2835
237 Ga0495635_0164423 3300046663 Unclassified 1510
238 Ga0495599_0018394 3300046678 Bacteria 4354
239 Ga0495599_0219136 3300046678 Unclassified 1165
240 Ga0495658_0006811 3300046683 Bacteria 5626
241 Ga0495658_0130656 3300046683 Bacteria 1528
242 Ga0495613_0061767 3300046689 Bacteria 2743
243 Ga0495613_0090929 3300046689 Bacteria 2210
244 Ga0495624_0031202 3300046690 Bacteria 3467
245 Ga0495604_0325393 3300047317 Bacteria 1027
246 Ga0495674_0003680 3300047319 Bacteria 14915
247 Ga0495674_0007473 3300047319 Bacteria 10434
248 Ga0495674_0134429 3300047319 Bacteria 2082
249 Ga0495674_0236271 3300047319 Bacteria 1507
250 Ga0495676_0023567 3300047321 Bacteria 5340
251 Ga0495684_0212382 3300047471 Bacteria 1422
252 Ga0495684_0241270 3300047471 Bacteria 1318
253 Ga0495684_0266034 3300047471 Bacteria 1242
254 Ga0495684_0331144 3300047471 Bacteria 1086
255 Ga0496106_0041125 3300048909 Bacteria 3464
256 Ga0496121_0387041 3300048924 Bacteria 920
257 Ga0496125_0098371 3300048928 Bacteria 2165
258 Ga0501034_0077825 3300049571 Bacteria 3322
259 Ga0501036_0206373 3300049572 Bacteria 1652
260 Ga0501036_0540492 3300049572 Bacteria 969
261 Ga0501040_0092714 3300049576 Bacteria 2100
262 Ga0501041_0022982 3300049577 Bacteria 3737
263 Ga0501048_0155918 3300049582 Bacteria 1615
264 Ga0501070_0159187 3300049586 Bacteria 1862
265 Ga0501070_0404602 3300049586 Bacteria 1104
266 Ga0501071_0023130 3300049587 Bacteria 4338
267 Ga0501076_0227887 3300049592 Bacteria 1523
268 Ga0501080_0118625 3300049742 Bacteria 2453
269 Ga0501083_0110934 3300049744 Bacteria 1804
270 Ga0501035_0050716 3300049822 Bacteria 3718
271 Ga0501035_0322724 3300049822 Bacteria 1297
272 Ga0501045_0011044 3300049824 Bacteria 6331
273 nmdc:mga05p37_691154_c1 3300050507 Unclassified 1135
274 nmdc:mga06r32_341161_c1 3300050510 Unclassified 1483
275 nmdc:mga06r32_416974_c1 3300050510 Bacteria 1324
276 nmdc:mga08y16_16071_c1 3300050511 Bacteria 7870
277 nmdc:mga08y16_808296_c1 3300050511 Bacteria 930
278 Ga0500650_0041990 3300053098 Unclassified 2112
279 Ga0500595_000061 3300053119 Bacteria 78756
280 Ga0501082_0208317 3300060353 Bacteria 1701
281 Ga0530510_0519393 3300061734 Bacteria 903
282 Ga0070689_100016296
283 JGI24746J21847_1001788
284 rootH2_10023276
285 rootH2_10119522
286 rootH1_10053559
287 Ga0070676_10057489
288 Ga0070683_100404317
289 Ga0070690_100003426
290 Ga0070690_100285651
291 Ga0070666_10078170
292 Ga0070689_100053379
293 Ga0070689_100456407
294 Ga0070661_100000937
295 Ga0070688_100245834
296 Ga0070714_100061587
297 Ga0070713_100048667
298 Ga0070713_100133165
299 Ga0070711_100009928
300 Ga0070700_100448359
301 Ga0070694_100025754
302 Ga0070708_100000594
303 Ga0070708_100040333
304 Ga0068867_100000037
305 Ga0070706_100000681
306 Ga0070707_100000945
307 Ga0070698_100059634
308 Ga0070698_100471163
309 Ga0070699_100020450
310 Ga0070672_100002573
311 Ga0070686_100203608
312 Ga0070696_100397089
313 Ga0068855_100069607
314 Ga0068855_100172638
315 Ga0070664_100005409
316 Ga0068857_100019671
317 Ga0068857_100077224
318 Ga0068856_100000211
319 Ga0068856_100019888
320 Ga0068856_100077870
321 Ga0068859_100020643
322 Ga0068859_100149101
323 Ga0068859_100995998
324 Ga0068864_100070532
325 Ga0068863_100086850
326 Ga0068858_100107249
327 Ga0068858_100455409
328 Ga0068860_100425961
329 Ga0068862_100960430
330 Ga0081455_10044534
331 Ga0081455_10276515
332 Ga0075367_10142846
333 Ga0097621_100128795
334 Ga0068871_100534401
335 Ga0075428_100000451
336 Ga0075428_100213036
337 Ga0075428_100887276
338 Ga0075431_100066765
339 Ga0075433_10690371
340 Ga0097620_100020643
341 Ga0097620_100149098
342 Ga0097620_100995978
343 Ga0099794_10090215
344 Ga0105240_10016955
345 Ga0111539_10003669
346 Ga0111539_10071315
347 Ga0111539_10103608
348 Ga0105245_10334426
349 Ga0114129_11073984
350 Ga0105243_10000066
351 Ga0105242_10017048
352 Ga0105248_10078608
353 Ga0105248_10571479
354 Ga0157370_10208235
355 Ga0157374_10030331
356 Ga0157375_10000051
357 Ga0163163_10138467
358 Ga0157376_10128726
359 Ga0207684_10000182
360 Ga0207695_10097857
361 Ga0207663_10006720
362 Ga0207649_10004177
363 Ga0207646_10026667
364 Ga0207694_10067883
365 Ga0207687_10075875
366 Ga0207664_10028504
367 Ga0207709_10000115
368 Ga0207670_10081664
369 Ga0207670_10208228
370 Ga0207691_10008949
371 Ga0207711_10049629
372 Ga0207679_10030157
373 Ga0207667_10062134
374 Ga0207703_10334107
375 Ga0207702_10002640
376 Ga0207641_10044446
377 Ga0207641_10143676
378 Ga0207641_10245012
379 Ga0207648_10000012
380 Ga0207674_10027996
381 Ga0207428_10193355
382 Ga0265337_1001841
383 Ga0265337_1010480
384 Ga0265337_1031523
385 Ga0265319_1000007
386 Ga0265319_1005967
387 Ga0265319_1021976
388 Ga0265334_10012288
389 Ga0265334_10058035
390 Ga0265336_10008269
391 Ga0265336_10023081
392 Ga0265338_10000040
393 Ga0265338_10000064
394 Ga0265338_10001028
395 Ga0265338_10001283
396 Ga0265338_10001719
397 Ga0265338_10002614
398 Ga0265338_10004514
399 Ga0265338_10004731
400 Ga0265338_10011330
401 Ga0265338_10012629
402 Ga0265338_10022973
403 Ga0265338_10025662
404 Ga0265338_10027816
405 Ga0265338_10069264
406 Ga0265338_10121782
407 Ga0265338_10176313
408 Ga0265338_10361334
409 Ga0265324_10000392
410 Ga0265324_10002166
411 Ga0265324_10006066
412 Ga0265324_10041326
413 Ga0265324_10080863
414 Ga0265332_10091819
415 Ga0265320_10000617
416 Ga0265320_10016697
417 Ga0265320_10021476
418 Ga0265320_10079354
419 Ga0265325_10017890
420 Ga0265325_10106330
421 Ga0265329_10004437
422 Ga0265340_10059537
423 Ga0265340_10062123
424 Ga0265339_10020732
425 Ga0265339_10093748
426 Ga0265339_10111675
427 Ga0265331_10050200
428 Ga0265327_10001104
429 Ga0265327_10001576
430 Ga0265327_10003420
431 Ga0265327_10134330
432 Ga0265316_10058108
433 Ga0265316_10061651
434 Ga0265316_10072025
435 Ga0265316_10172203
436 Ga0307408_100001117
437 Ga0265313_10012326
438 Ga0316579_10097969
439 Ga0265314_10000453
440 Ga0265314_10027600
441 Ga0265314_10044860
442 Ga0265314_10127221
443 Ga0307410_10287453
444 Ga0307406_10022088
445 Ga0307409_100002396
446 Ga0307416_100451821
447 Ga0307414_10270136
448 Ga0373928_0000296
449 Ga0373944_0000453
450 Ga0373932_0000001
451 Ga0373945_0001936
452 Ga0373954_0097802
453 Ga0373943_0055670
454 Ga0373955_0295781
455 Ga0373962_0000005
456 Ga0373931_0000008
457 Ga0373927_0085045
458 Ga0373927_0144922
459 Ga0373927_0318154
460 Ga0373947_0139455
461 Ga0373937_0074387
462 Ga0316582_0006998
463 Ga0316582_0077397
464 Ga0316582_0280311
465 Ga0316584_0207641
466 Ga0373925_0000192
467 Ga0400489_29436
468 Ga0451577_0002923
469 Ga0451577_0003402
470 Ga0451577_0053553
471 Ga0451577_0058038
472 Ga0451577_0243246
473 Ga0453684_0002874
474 Ga0453684_0010752
475 Ga0453684_0049436
476 Ga0453684_0089582
477 Ga0453684_0148422
478 Ga0453684_0936659
479 Ga0451576_0023010
480 Ga0451576_0092987
481 Ga0451576_0126311
482 Ga0451576_0139955
483 Ga0451576_0200904
484 Ga0451576_0200949
485 Ga0451576_0382075
486 Ga0451576_0643462
487 Ga0451576_0701701
488 Ga0495592_0000151
489 Ga0495592_0076266
490 Ga0495592_0214136
491 Ga0495651_0037247
492 Ga0495662_0017638
493 Ga0495664_0014101
494 Ga0495618_0000860
495 Ga0495628_0000092
496 Ga0495628_0083575
497 Ga0495628_0286027
498 Ga0495630_0000321
499 Ga0495630_0004491
500 Ga0495630_0014074
501 Ga0495630_0097807
502 Ga0495630_0215712
503 Ga0495630_0246208
504 Ga0495666_0012770
505 Ga0495666_0014348
506 Ga0495666_0037290
507 Ga0495652_0024142
508 Ga0495652_0348861
509 Ga0495640_0156814
510 Ga0495640_0194346
511 Ga0495586_0000008
512 Ga0495586_0000824
513 Ga0495586_0002149
514 Ga0495645_0005838
515 Ga0495622_0079726
516 Ga0495667_0101904
517 Ga0495634_0049218
518 Ga0495635_0164423
519 Ga0495599_0018394
520 Ga0495599_0219136
521 Ga0495658_0006811
522 Ga0495658_0130656
523 Ga0495613_0061767
524 Ga0495613_0090929
525 Ga0495624_0031202
526 Ga0495604_0325393
527 Ga0495674_0003680
528 Ga0495674_0007473
529 Ga0495674_0134429
530 Ga0495674_0236271
531 Ga0495676_0023567
532 Ga0495684_0212382
533 Ga0495684_0241270
534 Ga0495684_0266034
535 Ga0495684_0331144
536 Ga0496106_0041125
537 Ga0496121_0387041
538 Ga0496125_0098371
539 Ga0501034_0077825
540 Ga0501036_0206373
541 Ga0501036_0540492
542 Ga0501040_0092714
543 Ga0501041_0022982
544 Ga0501048_0155918
545 Ga0501070_0159187
546 Ga0501070_0404602
547 Ga0501071_0023130
548 Ga0501076_0227887
549 Ga0501080_0118625
550 Ga0501083_0110934
551 Ga0501035_0050716
552 Ga0501035_0322724
553 Ga0501045_0011044
554 nmdc:mga05p37_691154_c1
555 nmdc:mga06r32_341161_c1
556 nmdc:mga06r32_416974_c1
557 nmdc:mga08y16_16071_c1
558 nmdc:mga08y16_808296_c1
559 Ga0500650_0041990
560 Ga0500595_000061
561 Ga0501082_0208317
562 Ga0530510_0519393

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01416

PseudoU_synth_1

tRNA pseudouridine synthase

160

263

0.95

PF01416

PseudoU_synth_1

tRNA pseudouridine synthase

20

121

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
2nr0-assembly1.cif.gz_B crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.9581 16 264
2nre-assembly1.cif.gz_A-2 crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.9455 16 264
1vs3-assembly1.cif.gz_B crystal structure of the trna pseudouridine synthase trua from thermus thermophilus hb8 0.9294 18 264
1vs3-assembly1.cif.gz_B crystal structure of the trna pseudouridine synthase trua from thermus thermophilus hb8 0.9112 18 264
8q70-assembly1.cif.gz_A-2 trna pseudouridine synthase a homodimer 0.888 19 264
ID Description Score Start End Superfamily
af_Q2FW37_106_241_3.30.70.660 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.9648 127 261 3.30.70.660
af_Q2FW37_1_104_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9639 19 123 3.30.70.580
af_A0A1D6HBJ9_162_299_3.30.70.660 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.9505 126 257 3.30.70.660
af_Q2FW37_106_241_3.30.70.660 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.9441 127 261 3.30.70.660
2nreA02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.9408 126 262 3.30.70.660
ID Description Score Start End GO Terms
AF-A0A382HL64-F1-model_v4 Pseudouridine synthase I TruA alpha/beta domain-containing protein 0.9875 16 256 GO:0003723
GO:0009982
GO:0031119
AF-A0A837KFG2-F1-model_v4 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I) 0.9821 18 264 GO:0003723
GO:0009982
GO:0031119
GO:0140098
AF-A0A1E5G483-F1-model_v4 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I) 0.9812 18 264 GO:0003723
GO:0031119
GO:0160147
AF-A0A7X1ZPF8-F1-model_v4 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I) 0.9809 18 264 GO:0003723
GO:0031119
GO:0160147
AF-M1ZSX8-F1-model_v4 tRNA pseudouridine synthase (EC 5.4.99.12) 0.9806 114 264 GO:0003723
GO:0031119
GO:0160147

Map