F384692

General Info

Members Datasets Scaffolds Average Seq Length
282 206 564 330

Family's Representative Sequence

Representative Sequence 3300003775|Ga0055524_1000270|Ga0055524_10002701
Length 391
Sequence VATAPRAGGGAIPRLSAPLGGKVTFDHCARLQLSIESMACNCSAASDAMADLDLDALLAPLQDDAPCGADLEYDPAFLALEAAGAGKPEQQYGDTVIPAEEPDWPAVHEQALALARRTRDLRVAVWLARAGARLYGFGAALDGLSLIRGLLERHWAHVHPQLDASDNDDPTMRLNALQPLVSGTAAIADFRAASLTGQRGGPRVRDVELALGNADPIADESVPSPEGLMAGLAAQAANDPALAARLHESLPIAQGIVAAIETQLGAGQGPDFAPLLRLFKPLAAAAGQLQGQGGEAVAAPVDGASAPAGLAVGAVVADAVAAPGTIASRDDAVRALQRVCEWIERHEPSNPAPLLIRRAQRLMSKSFLEIMRDLNPDGVHEIEKLAGTPSE

Samples

Sample ID Description Type Environment
1 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
9 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
10 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
11 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
12 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
13 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
14 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
15 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
16 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
17 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
18 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
19 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
20 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
26 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
27 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
28 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
29 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
30 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
31 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
32 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
33 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
34 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
35 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300012497 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 Metagenome Rhizosphere
38 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
41 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
42 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
43 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
44 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
45 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
46 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
47 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
48 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
50 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
51 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
53 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
72 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
73 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
74 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
75 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
77 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
78 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
79 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
80 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
81 3300030735 Rhizosphere soil microbial communities in a healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 4 Metagenome Rhizosphere
82 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
83 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
84 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
85 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
86 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
87 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
88 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
89 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
90 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
91 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
92 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
93 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
94 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
95 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
96 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
97 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
98 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
99 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
100 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
101 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
102 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
103 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
104 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
105 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
106 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
107 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
108 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
109 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
110 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
111 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
112 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
113 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
114 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
115 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
116 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
117 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
118 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
119 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
120 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
121 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
122 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
123 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
124 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
125 3300042147 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_080116_2618 Metagenome Rhizosphere
126 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
127 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
128 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
129 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
130 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
131 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
132 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
133 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
134 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
135 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
136 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
137 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
138 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
139 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
140 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
141 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
142 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
143 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
144 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
145 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
146 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
147 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
148 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
149 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
150 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
151 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
152 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
153 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
154 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
155 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
156 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
157 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
158 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
159 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
160 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
161 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
162 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
163 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
164 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
165 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
166 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
167 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
168 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
169 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
170 3300053110 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 endosphere Metagenome Endosphere
171 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
172 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
173 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
174 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
175 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
176 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
177 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
178 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
179 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
180 3300053141 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 endosphere Metagenome Endosphere
181 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
182 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
183 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
184 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
185 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
186 3300053734 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 endosphere Metagenome Endosphere
187 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
188 2513020051 Variovorax sp. CF313 Isolate Rhizosphere
189 2643221628 Variovorax sp. Root318D1 Isolate Unclassified
190 2643221644 Rhizobacter sp. Root1221 Isolate Unclassified
191 2643221658 Variovorax sp. Root411 Isolate Unclassified
192 2643221672 Variovorax sp. Root434 Isolate Unclassified
193 2643221683 Variovorax sp. Root473 Isolate Unclassified
194 2738543013 Variovorax sp. BT01 Isolate Unclassified
195 2831864461 Roseateles noduli HZ7 Isolate Nodule
196 2842677519 Variovorax sp. R-72495 Isolate Unclassified
197 2904449895 Variovorax sp. 1763 Isolate Rhizosphere
198 2904456579 Variovorax sp. 2002 Isolate Unclassified
199 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
200 2919462493 Variovorax sp. 3319 Isolate Rhizosphere
201 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
202 2929520902 Variovorax beijingensis 502 Isolate Unclassified
203 2945909444 Variovorax sp. CRF3-Va-1 W1I1 Isolate Rhizosphere
204 2945945610 Variovorax paradoxus W1I18 Isolate Rhizosphere
205 2945972063 Variovorax paradoxus W2I8 Isolate Rhizosphere
206 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.43
Metatranscriptomes 2.84
Isolates 6.74

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 34.04
Nodule 2.48
Rhizoplane 0.71
Rhizosphere 48.94
Stem 0
Stem Tuber 0
Unclassified 0.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055524_1000270 3300003775 Bacteria 51977
2 JGI24739J22299_10028662 3300001989 Bacteria 1941
3 JGI25151J46595_10000859 3300003187 Bacteria 24089
4 JGI25151J46595_10002704 3300003187 Bacteria 10354
5 rootH1_10039604 3300003316 Bacteria 5616
6 rootH2_10014253 3300003320 Bacteria 3206
7 rootL2_10000217 3300003322 Bacteria 81342
8 rootL2_10035968 3300003322 Bacteria 5276
9 rootH1_10024429 3300003323 Bacteria 14705
10 Ga0055537_1000230 3300003773 Bacteria 40840
11 Ga0055524_1000182 3300003775 Bacteria 70730
12 Ga0055536_1001503 3300003781 Bacteria 14011
13 Ga0055536_1035418 3300003781 Bacteria 1249
14 Ga0055534_1000151 3300003784 Bacteria 51420
15 Ga0055534_1001822 3300003784 Bacteria 7976
16 Ga0055528_1000165 3300003790 Bacteria 55665
17 Ga0055540_1000148 3300003792 Bacteria 70105
18 Ga0055540_1003662 3300003792 Bacteria 7317
19 Ga0055540_1003681 3300003792 Bacteria 7286
20 Ga0055540_1005504 3300003792 Bacteria 5299
21 Ga0055540_1026080 3300003792 Bacteria 1419
22 Ga0055531_10001711 3300003794 Bacteria 15732
23 Ga0055531_10002762 3300003794 Bacteria 11516
24 Ga0055531_10043375 3300003794 Bacteria 1274
25 Ga0055543_1005759 3300004625 Bacteria 3113
26 Ga0055543_1019431 3300004625 Bacteria 1258
27 Ga0065165_1000270 3300005262 Bacteria 88828
28 Ga0065165_1001444 3300005262 Bacteria 25757
29 Ga0070660_100111775 3300005339 Bacteria 2174
30 Ga0070689_100000124 3300005340 Bacteria 44440
31 Ga0070661_100002870 3300005344 Bacteria 11844
32 Ga0070713_100061145 3300005436 Bacteria 3151
33 Ga0070662_100006234 3300005457 Bacteria 7680
34 Ga0070662_100067958 3300005457 Bacteria 2618
35 Ga0068853_100053710 3300005539 Bacteria 3469
36 Ga0070664_100008502 3300005564 Bacteria 8298
37 Ga0070664_100012324 3300005564 Bacteria 6947
38 Ga0068856_100451967 3300005614 Bacteria 1305
39 Ga0075365_10025933 3300006038 Bacteria 3715
40 Ga0075363_100028823 3300006048 Bacteria 2860
41 Ga0075363_100097521 3300006048 Bacteria 1624
42 Ga0075364_10003521 3300006051 Bacteria 8908
43 Ga0075367_10008067 3300006178 Bacteria 5433
44 Ga0075370_10015832 3300006353 Bacteria 4046
45 Ga0075370_10071742 3300006353 Bacteria 1982
46 Ga0075370_10103988 3300006353 Bacteria 1645
47 Ga0099823_1007818 3300006944 Bacteria 10884
48 Ga0079104_1000595 3300006946 Bacteria 36027
49 Ga0099826_10009315 3300006948 Bacteria 7332
50 Ga0105251_10000101 3300009011 Bacteria 84159
51 Ga0105244_10006545 3300009036 Bacteria 7516
52 Ga0105250_10000365 3300009092 Bacteria 33938
53 Ga0105243_10002392 3300009148 Bacteria 15724
54 Ga0105243_10012733 3300009148 Bacteria 6354
55 Ga0105238_10190005 3300009551 Bacteria 2030
56 Ga0157319_1000006 3300012497 Bacteria 361506
57 Ga0157373_10007151 3300013100 Bacteria 8325
58 Ga0157370_10019755 3300013104 Bacteria 6744
59 Ga0157374_10002222 3300013296 Bacteria 16365
60 Ga0182008_10001277 3300014497 Bacteria 17273
61 Ga0182008_10020023 3300014497 Bacteria 3448
62 Ga0182008_10023601 3300014497 Bacteria 3140
63 Ga0182006_1003015 3300015261 Bacteria 8858
64 Ga0182006_1030336 3300015261 Bacteria 2185
65 Ga0182007_10000297 3300015262 Bacteria 32194
66 Ga0182005_1048994 3300015265 Bacteria 1148
67 Ga0163161_10000165 3300017792 Bacteria 60584
68 Ga0163161_10002381 3300017792 Bacteria 13474
69 Ga0163161_10126439 3300017792 Bacteria 1925
70 Ga0209129_1003069 3300025258 Bacteria 7543
71 Ga0209565_1000070 3300025263 Bacteria 168957
72 Ga0209673_1000518 3300025273 Bacteria 63151
73 Ga0209673_1002493 3300025273 Bacteria 12678
74 Ga0209673_1007786 3300025273 Bacteria 4867
75 Ga0209130_1002118 3300025284 Bacteria 10552
76 Ga0209675_1000069 3300025291 Bacteria 170538
77 Ga0209675_1004024 3300025291 Bacteria 6700
78 Ga0209676_1000361 3300025292 Bacteria 85925
79 Ga0209676_1002376 3300025292 Bacteria 13516
80 Ga0209676_1004529 3300025292 Bacteria 7701
81 Ga0209025_1000319 3300025294 Bacteria 107011
82 Ga0209025_1000940 3300025294 Bacteria 44330
83 Ga0209025_1034002 3300025294 Bacteria 2341
84 Ga0209564_1000003 3300025295 Bacteria 1585848
85 Ga0209050_1001069 3300025298 Bacteria 33615
86 Ga0209050_1001285 3300025298 Bacteria 28571
87 Ga0209050_1003147 3300025298 Bacteria 12589
88 Ga0209050_1016768 3300025298 Bacteria 2970
89 Ga0209050_1035088 3300025298 Bacteria 1488
90 Ga0209050_1039528 3300025298 Bacteria 1328
91 Ga0209256_1000024 3300025299 Bacteria 448909
92 Ga0209256_1000053 3300025299 Bacteria 298731
93 Ga0209051_1000155 3300025303 Bacteria 129560
94 Ga0209051_1000184 3300025303 Bacteria 112134
95 Ga0209051_1000607 3300025303 Bacteria 41634
96 Ga0209051_1001203 3300025303 Bacteria 23380
97 Ga0209051_1001405 3300025303 Bacteria 20686
98 Ga0209051_1020721 3300025303 Bacteria 2820
99 Ga0209257_1000236 3300025304 Bacteria 129543
100 Ga0209257_1005746 3300025304 Bacteria 8484
101 Ga0209257_1006119 3300025304 Bacteria 7982
102 Ga0209257_1014244 3300025304 Bacteria 3434
103 Ga0207696_1000020 3300025711 Bacteria 434998
104 Ga0207655_1004162 3300025728 Bacteria 10384
105 Ga0207713_1000032 3300025735 Bacteria 276465
106 Ga0207657_10086476 3300025919 Bacteria 2624
107 Ga0207649_10000980 3300025920 Bacteria 17679
108 Ga0207694_10057675 3300025924 Bacteria 3019
109 Ga0207706_10000608 3300025933 Bacteria 38085
110 Ga0207706_10020208 3300025933 Bacteria 5985
111 Ga0207709_10000448 3300025935 Bacteria 38563
112 Ga0207709_10001520 3300025935 Bacteria 16003
113 Ga0207670_10000010 3300025936 Bacteria 283265
114 Ga0207704_10215889 3300025938 Bacteria 1415
115 Ga0207679_10016146 3300025945 Bacteria 4952
116 Ga0207679_10024653 3300025945 Bacteria 4126
117 Ga0207639_10032479 3300026041 Bacteria 3842
118 Ga0207639_10240455 3300026041 Bacteria 1574
119 Ga0207702_10285755 3300026078 Bacteria 1561
120 Ga0209281_1000322 3300027111 Bacteria 84374
121 Ga0209389_1041279 3300027296 Bacteria 3532
122 Ga0209282_1003572 3300027666 Bacteria 9260
123 Ga0207428_10041173 3300027907 Bacteria 3742
124 Ga0268265_10066477 3300028380 Bacteria 2787
125 Ga0307515_10005700 3300028794 Bacteria 25145
126 Ga0307515_10051500 3300028794 Bacteria 6136
127 Ga0307515_10247783 3300028794 Bacteria 1540
128 Ga0265324_10000093 3300029957 Bacteria 69020
129 Ga0316177_1023969 3300030731 Bacteria 2906
130 Ga0314311_1245851 3300030733 Bacteria 6091
131 Ga0316179_1071295 3300030734 Bacteria 3618
132 Ga0316178_1072583 3300030735 Bacteria 3619
133 Ga0316180_1003166 3300030736 Bacteria 9836
134 Ga0316183_1102029 3300030742 Bacteria 14480
135 Ga0316182_1136150 3300030745 Bacteria 1950
136 Ga0316182_1136250 3300030745 Bacteria 2059
137 Ga0265330_10025048 3300031235 Bacteria 2706
138 Ga0265325_10026318 3300031241 Bacteria 3151
139 Ga0265329_10000102 3300031242 Bacteria 40580
140 Ga0265339_10000001 3300031249 Bacteria 613713
141 Ga0265339_10001649 3300031249 Bacteria 16455
142 Ga0265316_10000102 3300031344 Bacteria 92202
143 Ga0265316_10116573 3300031344 Bacteria 2019
144 Ga0307509_10034146 3300031507 Bacteria 5590
145 Ga0307408_100187545 3300031548 Bacteria 1663
146 Ga0307408_100290722 3300031548 Bacteria 1364
147 Ga0265313_10003799 3300031595 Bacteria 11972
148 Ga0307508_10000215 3300031616 Bacteria 70109
149 Ga0307514_10001733 3300031649 Bacteria 24980
150 Ga0307514_10012767 3300031649 Bacteria 6981
151 Ga0307514_10017199 3300031649 Bacteria 5954
152 Ga0316579_10013986 3300031691 Bacteria 3461
153 Ga0265342_10001542 3300031712 Bacteria 21285
154 Ga0265342_10065311 3300031712 Bacteria 2133
155 Ga0316576_10009927 3300031727 Bacteria 6162
156 Ga0316578_10014511 3300031728 Bacteria 4211
157 Ga0316578_10078111 3300031728 Bacteria 1966
158 Ga0307516_10000074 3300031730 Bacteria 107888
159 Ga0307516_10009121 3300031730 Bacteria 11111
160 Ga0307405_10004462 3300031731 Bacteria 6615
161 Ga0307405_10013885 3300031731 Bacteria 4310
162 Ga0307410_10199519 3300031852 Bacteria 1527
163 Ga0307406_10000184 3300031901 Bacteria 37320
164 Ga0307406_10066708 3300031901 Bacteria 2343
165 Ga0307407_10227266 3300031903 Bacteria 1265
166 Ga0307412_10019754 3300031911 Bacteria 4087
167 Ga0307412_10044899 3300031911 Bacteria 2885
168 Ga0307416_100451245 3300032002 Bacteria 1338
169 Ga0307411_10112534 3300032005 Bacteria 1951
170 Ga0316580_10001491 3300032139 Bacteria 6134
171 Ga0316580_10011800 3300032139 Bacteria 2655
172 Ga0316593_10000488 3300032168 Bacteria 7342
173 Ga0316593_10046628 3300032168 Unclassified 1455
174 Ga0316592_1003160 3300033524 Bacteria 2937
175 Ga0316592_1010792 3300033524 Bacteria 1847
176 Ga0316588_1012062 3300033528 Bacteria 1855
177 Ga0316588_1029452 3300033528 Bacteria 1284
178 Ga0316587_1016094 3300033529 Bacteria 1245
179 Ga0316596_1018140 3300033541 Bacteria 1777
180 Ga0316574_0007153 3300035398 Bacteria 6101
181 Ga0316574_0107160 3300035398 Bacteria 1790
182 Ga0316582_0051502 3300036647 Bacteria 2612
183 Ga0316584_0026182 3300036712 Bacteria 4285
184 Ga0316584_0044716 3300036712 Bacteria 3303
185 Ga0395905_0016460 3300037471 Bacteria 7029
186 Ga0400485_02459 3300038735 Bacteria 132034
187 Ga0400488_06679 3300038741 Bacteria 9467
188 Ga0400486_23232 3300038742 Bacteria 285561
189 Ga0400487_21982 3300039110 Bacteria 15414
190 Ga0436363_1597640 3300039450 Bacteria 1990
191 Ga0439466_0002974 3300041411 Bacteria 6618
192 Ga0439449_0013857 3300042007 Bacteria 3032
193 Ga0450890_002987 3300042127 Bacteria 2274
194 Ga0450910_001406 3300042147 Bacteria 3022
195 Ga0439446_0017403 3300042156 Bacteria 2009
196 Ga0450908_000704 3300042184 Bacteria 6393
197 Ga0439459_0000127 3300042438 Bacteria 7493
198 Ga0450918_000700 3300042531 Bacteria 7113
199 Ga0466969_0006818 3300044656 Bacteria 6075
200 Ga0466972_0003044 3300044658 Bacteria 8318
201 Ga0466966_0044917 3300044684 Bacteria 2826
202 Ga0466961_0010972 3300044693 Bacteria 5789
203 Ga0466963_0069500 3300044694 Bacteria 2367
204 Ga0466971_0072806 3300044719 Bacteria 1561
205 Ga0466958_0052033 3300045836 Bacteria 2481
206 Ga0495627_002315 3300046453 Bacteria 9372
207 Ga0495638_0219623 3300046460 Bacteria 1063
208 Ga0495620_0004789 3300046515 Bacteria 7607
209 Ga0495625_0000146 3300046660 Bacteria 108123
210 Ga0495588_0026186 3300046674 Bacteria 2910
211 Ga0495658_0198373 3300046683 Bacteria 1250
212 Ga0495671_0003192 3300046692 Bacteria 10186
213 Ga0495676_0000492 3300047321 Bacteria 32413
214 Ga0495593_0003768 3300047673 Bacteria 9056
215 Ga0495614_0001098 3300048089 Bacteria 11577
216 Ga0496102_0143350 3300048905 Bacteria 2241
217 Ga0496114_0041780 3300048917 Bacteria 3800
218 Ga0496116_0010852 3300048919 Bacteria 7597
219 Ga0496117_0015386 3300048920 Bacteria 6525
220 Ga0496118_0026500 3300048921 Bacteria 4935
221 Ga0496122_0121837 3300048925 Bacteria 1680
222 Ga0496124_0014438 3300048927 Bacteria 7638
223 Ga0496124_0020783 3300048927 Bacteria 6058
224 Ga0496124_0102479 3300048927 Bacteria 2316
225 Ga0496125_0084013 3300048928 Bacteria 2419
226 Ga0496126_0064604 3300048929 Bacteria 3278
227 Ga0501198_000093 3300049649 Bacteria 18318
228 Ga0501222_000115 3300049662 Bacteria 18191
229 Ga0501262_000760 3300049759 Bacteria 3719
230 nmdc:mga03683_13039_c1 3300050489 Bacteria 3051
231 nmdc:mga03n38_1477_c1 3300050490 Bacteria 6772
232 nmdc:mga00v17_750_c1 3300050491 Bacteria 17664
233 nmdc:mga0yw44_168_c1 3300050492 Bacteria 22784
234 nmdc:mga0k408_4110_c1 3300050493 Bacteria 7731
235 nmdc:mga07m45_12567_c1 3300050496 Bacteria 4478
236 nmdc:mga07m45_25155_c1 3300050496 Bacteria 3263
237 nmdc:mga07m45_3779_c1 3300050496 Bacteria 7324
238 nmdc:mga07m45_41007_c2 3300050496 Bacteria 2021
239 nmdc:mga07m45_4339_c1 3300050496 Bacteria 6938
240 nmdc:mga0sz30_13396_c1 3300050516 Bacteria 1606
241 Ga0500610_0013685 3300053079 Bacteria 3786
242 Ga0500643_013480 3300053087 Bacteria 2884
243 Ga0500643_049827 3300053087 Bacteria 1200
244 Ga0500651_0002947 3300053093 Bacteria 9158
245 Ga0500566_0062888 3300053094 Bacteria 2097
246 Ga0500571_000027 3300053110 Bacteria 51623
247 Ga0500593_000151 3300053117 Bacteria 27776
248 Ga0500597_028379 3300053120 Bacteria 2282
249 Ga0500607_001110 3300053121 Bacteria 25307
250 Ga0500608_026547 3300053122 Bacteria 2721
251 Ga0500618_023308 3300053125 Bacteria 1500
252 Ga0500655_000349 3300053133 Bacteria 10139
253 Ga0500658_0001226 3300053134 Bacteria 10431
254 Ga0500561_0007141 3300053137 Bacteria 2162
255 Ga0500564_039530 3300053138 Bacteria 2173
256 Ga0500574_000775 3300053141 Bacteria 4296
257 Ga0500590_015002 3300053148 Bacteria 3998
258 Ga0500627_0001618 3300053158 Bacteria 6368
259 Ga0500634_0038079 3300053161 Bacteria 2615
260 Ga0500638_000413 3300053162 Bacteria 10173
261 Ga0500636_0002440 3300053177 Bacteria 10304
262 Ga0500565_000189 3300053734 Bacteria 3019
263 Ga0466962_0012722 3300061719 Bacteria 4048
264 2513228027 2513020051 Bacteria 6053213
265 2644161105 2643221628 Bacteria 5745828
266 2644246273 2643221644 Bacteria 6865017
267 2644326279 2643221658 Bacteria 6064537
268 2644399381 2643221672 Bacteria 6322190
269 2644469676 2643221683 Bacteria 5749203
270 2739251732 2738543013 Bacteria 5618633
271 2831867432 2831864461 Bacteria 6502356
272 2842682905 2842677519 Bacteria 5615038
273 2904455628 2904449895 Bacteria 6927402
274 2904462239 2904456579 Bacteria 6819253
275 2904545808 2904541872 Bacteria 8915136
276 2919464763 2919462493 Bacteria 5817112
277 2929160994 2929160207 Bacteria 9075316
278 2929526818 2929520902 Bacteria 6765052
279 2945915847 2945909444 Bacteria 7065066
280 2945950171 2945945610 Bacteria 5951079
281 2945975184 2945972063 Bacteria 6086495
282 2945988719 2945984333 Bacteria 7358892
283 Ga0055524_1000270
284 JGI24739J22299_10028662
285 JGI25151J46595_10000859
286 JGI25151J46595_10002704
287 rootH1_10039604
288 rootH2_10014253
289 rootL2_10000217
290 rootL2_10035968
291 rootH1_10024429
292 Ga0055537_1000230
293 Ga0055524_1000182
294 Ga0055536_1001503
295 Ga0055536_1035418
296 Ga0055534_1000151
297 Ga0055534_1001822
298 Ga0055528_1000165
299 Ga0055540_1000148
300 Ga0055540_1003662
301 Ga0055540_1003681
302 Ga0055540_1005504
303 Ga0055540_1026080
304 Ga0055531_10001711
305 Ga0055531_10002762
306 Ga0055531_10043375
307 Ga0055543_1005759
308 Ga0055543_1019431
309 Ga0065165_1000270
310 Ga0065165_1001444
311 Ga0070660_100111775
312 Ga0070689_100000124
313 Ga0070661_100002870
314 Ga0070713_100061145
315 Ga0070662_100006234
316 Ga0070662_100067958
317 Ga0068853_100053710
318 Ga0070664_100008502
319 Ga0070664_100012324
320 Ga0068856_100451967
321 Ga0075365_10025933
322 Ga0075363_100028823
323 Ga0075363_100097521
324 Ga0075364_10003521
325 Ga0075367_10008067
326 Ga0075370_10015832
327 Ga0075370_10071742
328 Ga0075370_10103988
329 Ga0099823_1007818
330 Ga0079104_1000595
331 Ga0099826_10009315
332 Ga0105251_10000101
333 Ga0105244_10006545
334 Ga0105250_10000365
335 Ga0105243_10002392
336 Ga0105243_10012733
337 Ga0105238_10190005
338 Ga0157319_1000006
339 Ga0157373_10007151
340 Ga0157370_10019755
341 Ga0157374_10002222
342 Ga0182008_10001277
343 Ga0182008_10020023
344 Ga0182008_10023601
345 Ga0182006_1003015
346 Ga0182006_1030336
347 Ga0182007_10000297
348 Ga0182005_1048994
349 Ga0163161_10000165
350 Ga0163161_10002381
351 Ga0163161_10126439
352 Ga0209129_1003069
353 Ga0209565_1000070
354 Ga0209673_1000518
355 Ga0209673_1002493
356 Ga0209673_1007786
357 Ga0209130_1002118
358 Ga0209675_1000069
359 Ga0209675_1004024
360 Ga0209676_1000361
361 Ga0209676_1002376
362 Ga0209676_1004529
363 Ga0209025_1000319
364 Ga0209025_1000940
365 Ga0209025_1034002
366 Ga0209564_1000003
367 Ga0209050_1001069
368 Ga0209050_1001285
369 Ga0209050_1003147
370 Ga0209050_1016768
371 Ga0209050_1035088
372 Ga0209050_1039528
373 Ga0209256_1000024
374 Ga0209256_1000053
375 Ga0209051_1000155
376 Ga0209051_1000184
377 Ga0209051_1000607
378 Ga0209051_1001203
379 Ga0209051_1001405
380 Ga0209051_1020721
381 Ga0209257_1000236
382 Ga0209257_1005746
383 Ga0209257_1006119
384 Ga0209257_1014244
385 Ga0207696_1000020
386 Ga0207655_1004162
387 Ga0207713_1000032
388 Ga0207657_10086476
389 Ga0207649_10000980
390 Ga0207694_10057675
391 Ga0207706_10000608
392 Ga0207706_10020208
393 Ga0207709_10000448
394 Ga0207709_10001520
395 Ga0207670_10000010
396 Ga0207704_10215889
397 Ga0207679_10016146
398 Ga0207679_10024653
399 Ga0207639_10032479
400 Ga0207639_10240455
401 Ga0207702_10285755
402 Ga0209281_1000322
403 Ga0209389_1041279
404 Ga0209282_1003572
405 Ga0207428_10041173
406 Ga0268265_10066477
407 Ga0307515_10005700
408 Ga0307515_10051500
409 Ga0307515_10247783
410 Ga0265324_10000093
411 Ga0316177_1023969
412 Ga0314311_1245851
413 Ga0316179_1071295
414 Ga0316178_1072583
415 Ga0316180_1003166
416 Ga0316183_1102029
417 Ga0316182_1136150
418 Ga0316182_1136250
419 Ga0265330_10025048
420 Ga0265325_10026318
421 Ga0265329_10000102
422 Ga0265339_10000001
423 Ga0265339_10001649
424 Ga0265316_10000102
425 Ga0265316_10116573
426 Ga0307509_10034146
427 Ga0307408_100187545
428 Ga0307408_100290722
429 Ga0265313_10003799
430 Ga0307508_10000215
431 Ga0307514_10001733
432 Ga0307514_10012767
433 Ga0307514_10017199
434 Ga0316579_10013986
435 Ga0265342_10001542
436 Ga0265342_10065311
437 Ga0316576_10009927
438 Ga0316578_10014511
439 Ga0316578_10078111
440 Ga0307516_10000074
441 Ga0307516_10009121
442 Ga0307405_10004462
443 Ga0307405_10013885
444 Ga0307410_10199519
445 Ga0307406_10000184
446 Ga0307406_10066708
447 Ga0307407_10227266
448 Ga0307412_10019754
449 Ga0307412_10044899
450 Ga0307416_100451245
451 Ga0307411_10112534
452 Ga0316580_10001491
453 Ga0316580_10011800
454 Ga0316593_10000488
455 Ga0316593_10046628
456 Ga0316592_1003160
457 Ga0316592_1010792
458 Ga0316588_1012062
459 Ga0316588_1029452
460 Ga0316587_1016094
461 Ga0316596_1018140
462 Ga0316574_0007153
463 Ga0316574_0107160
464 Ga0316582_0051502
465 Ga0316584_0026182
466 Ga0316584_0044716
467 Ga0395905_0016460
468 Ga0400485_02459
469 Ga0400488_06679
470 Ga0400486_23232
471 Ga0400487_21982
472 Ga0436363_1597640
473 Ga0439466_0002974
474 Ga0439449_0013857
475 Ga0450890_002987
476 Ga0450910_001406
477 Ga0439446_0017403
478 Ga0450908_000704
479 Ga0439459_0000127
480 Ga0450918_000700
481 Ga0466969_0006818
482 Ga0466972_0003044
483 Ga0466966_0044917
484 Ga0466961_0010972
485 Ga0466963_0069500
486 Ga0466971_0072806
487 Ga0466958_0052033
488 Ga0495627_002315
489 Ga0495638_0219623
490 Ga0495620_0004789
491 Ga0495625_0000146
492 Ga0495588_0026186
493 Ga0495658_0198373
494 Ga0495671_0003192
495 Ga0495676_0000492
496 Ga0495593_0003768
497 Ga0495614_0001098
498 Ga0496102_0143350
499 Ga0496114_0041780
500 Ga0496116_0010852
501 Ga0496117_0015386
502 Ga0496118_0026500
503 Ga0496122_0121837
504 Ga0496124_0014438
505 Ga0496124_0020783
506 Ga0496124_0102479
507 Ga0496125_0084013
508 Ga0496126_0064604
509 Ga0501198_000093
510 Ga0501222_000115
511 Ga0501262_000760
512 nmdc:mga03683_13039_c1
513 nmdc:mga03n38_1477_c1
514 nmdc:mga00v17_750_c1
515 nmdc:mga0yw44_168_c1
516 nmdc:mga0k408_4110_c1
517 nmdc:mga07m45_12567_c1
518 nmdc:mga07m45_25155_c1
519 nmdc:mga07m45_3779_c1
520 nmdc:mga07m45_41007_c2
521 nmdc:mga07m45_4339_c1
522 nmdc:mga0sz30_13396_c1
523 Ga0500610_0013685
524 Ga0500643_013480
525 Ga0500643_049827
526 Ga0500651_0002947
527 Ga0500566_0062888
528 Ga0500571_000027
529 Ga0500593_000151
530 Ga0500597_028379
531 Ga0500607_001110
532 Ga0500608_026547
533 Ga0500618_023308
534 Ga0500655_000349
535 Ga0500658_0001226
536 Ga0500561_0007141
537 Ga0500564_039530
538 Ga0500574_000775
539 Ga0500590_015002
540 Ga0500627_0001618
541 Ga0500634_0038079
542 Ga0500638_000413
543 Ga0500636_0002440
544 Ga0500565_000189
545 Ga0466962_0012722
546 2513228027
547 2644161105
548 2644246273
549 2644326279
550 2644399381
551 2644469676
552 2739251732
553 2831867432
554 2842682905
555 2904455628
556 2904462239
557 2904545808
558 2919464763
559 2929160994
560 2929526818
561 2945915847
562 2945950171
563 2945975184
564 2945988719

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06812

ImpA_N

ImpA, N-terminal, type VI secretion system

58

182

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
6hs5-assembly1.cif.gz_A n-terminal domain including the conserved impa_n region of the tssa component of the type vi secretion system from burkholderia cenocepacia 0.7496 1 243
6px0-assembly1.cif.gz_A crystal structure of the tpr domain of human aryl hydrocarbon receptor-interacting protein-like 1 (aipl1) 0.7441 56 108
6hs5-assembly1.cif.gz_A n-terminal domain including the conserved impa_n region of the tssa component of the type vi secretion system from burkholderia cenocepacia 0.7147 1 243
2xcb-assembly1.cif.gz_A crystal structure of pcrh in complex with the chaperone binding region of popd 0.5526 56 242
3wxx-assembly2.cif.gz_C crystal structure of a t3ss complex from aeromonas hydrophila 0.5119 3 245
ID Description Score Start End Superfamily
af_A0A0R0EYI5_847_946_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7837 56 106 1.25.40.10
af_I1JNX6_459_563_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7298 57 109 1.25.40.10
af_E7FG92_519_648_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7233 56 106 1.25.40.10
af_Q8VD72_227_326_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7205 57 106 1.25.40.10
4xifB01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7087 56 105 1.25.40.10
ID Description Score Start End GO Terms
AF-A0A4Q3P315-F1-model_v4 deleted 0.9787 7 109
AF-A0A367LZL0-F1-model_v4 Type VI secretion system protein TssA 0.9746 7 106
AF-T1AP37-F1-model_v4 Type VI secretion-associated protein, ImpA family 0.9668 7 71
AF-A0A379CTR8-F1-model_v4 deleted 0.9641 7 86
AF-A0A257N0E6-F1-model_v4 Type VI secretion system protein ImpA 0.9591 7 83

Map